name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-B7-5816-01A-21D-1600-08	1458	1442	16	1074	1.097394e-02	0	coding only	34834024	367	1065	1.053568e-05	3.057356e-05
TCGA-B7-5818-01A-11D-1600-08	476	468	8	352	1.680672e-02	0	coding only	34834024	115	347	3.301370e-06	9.961525e-06
TCGA-BR-4183-01A-02D-1126-08	86	75	11	54	1.279070e-01	1	exome+100bp flanks	34834024	21	51	6.028589e-07	1.464086e-06
TCGA-BR-4184-01A-01D-1126-08	4635	4556	79	3245	1.704423e-02	0	coding only	34834024	1294	3208	3.714759e-05	9.209387e-05
TCGA-BR-4187-01A-01D-1126-08	51	43	8	31	1.568627e-01	1	exome+100bp flanks	34834024	11	29	3.157832e-07	8.325194e-07
TCGA-BR-4188-01A-01D-1126-08	101	94	7	72	6.930693e-02	1	exome+100bp flanks	34834024	22	70	6.315664e-07	2.009530e-06
TCGA-BR-4191-01A-02D-1126-08	236	228	8	177	3.389831e-02	1	exome+100bp flanks	34834024	50	171	1.435378e-06	4.908994e-06
TCGA-BR-4201-01A-01D-1126-08	1461	1421	40	993	2.737851e-02	0	coding only	34834024	426	984	1.222942e-05	2.824824e-05
TCGA-BR-4253-01A-01D-1126-08	118	106	12	79	1.016949e-01	1	exome+100bp flanks	34834024	25	77	7.176891e-07	2.210482e-06
TCGA-BR-4255-01A-01D-1126-08	92	80	12	50	1.304348e-01	1	exome+100bp flanks	34834024	29	47	8.325194e-07	1.349256e-06
TCGA-BR-4256-01A-01D-1126-08	1124	1100	24	762	2.135231e-02	0	coding only	34834024	333	750	9.559619e-06	2.153067e-05
TCGA-BR-4257-01A-01D-1126-08	1240	1220	20	836	1.612903e-02	0	coding only	34834024	375	820	1.076534e-05	2.354020e-05
TCGA-BR-4267-01A-01D-1126-08	117	109	8	82	6.837607e-02	1	exome+100bp flanks	34834024	27	77	7.751042e-07	2.210482e-06
TCGA-BR-4279-01A-01D-1126-08	71	64	7	38	9.859155e-02	1	exome+100bp flanks	34834024	24	37	6.889816e-07	1.062180e-06
TCGA-BR-4280-01A-01D-1126-08	895	860	35	661	3.910615e-02	1	exome+100bp flanks	34834024	197	651	5.655390e-06	1.868862e-05
TCGA-BR-4292-01A-01D-1126-08	1591	1552	39	1126	2.451288e-02	0	coding only	34834024	414	1105	1.188493e-05	3.172186e-05
TCGA-BR-4294-01A-01D-1126-08	46	41	5	33	1.086957e-01	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-BR-4357-01A-01D-1158-08	297	294	3	223	1.010101e-02	0	coding only	34834024	71	221	2.038237e-06	6.344372e-06
TCGA-BR-4361-01A-01D-1158-08	3289	3242	47	2330	1.429006e-02	0	coding only	34834024	903	2305	2.592293e-05	6.617094e-05
TCGA-BR-4362-01A-01D-1158-08	1898	1870	28	1363	1.475237e-02	0	coding only	34834024	503	1348	1.443991e-05	3.869780e-05
TCGA-BR-4363-01A-01D-1158-08	610	603	7	439	1.147541e-02	0	coding only	34834024	162	434	4.650625e-06	1.245908e-05
TCGA-BR-4366-01A-01D-1158-08	176	174	2	128	1.136364e-02	0	coding only	34834024	45	126	1.291840e-06	3.617153e-06
TCGA-BR-4368-01A-01D-1158-08	1507	1484	23	1041	1.526211e-02	0	coding only	34834024	443	1031	1.271745e-05	2.959750e-05
TCGA-BR-4369-01A-01D-1158-08	210	208	2	154	9.523810e-03	0	coding only	34834024	54	151	1.550208e-06	4.334842e-06
TCGA-BR-4370-01A-01D-1158-08	1194	1180	14	831	1.172529e-02	0	coding only	34834024	345	823	9.904110e-06	2.362633e-05
TCGA-BR-4371-01A-01D-1158-08	194	189	5	137	2.577320e-02	0	coding only	34834024	52	134	1.492793e-06	3.846814e-06
TCGA-BR-6452-01A-12D-1800-08	8729	8624	105	6287	1.202887e-02	0	coding only	34834024	2313	6226	6.640060e-05	1.787333e-04
TCGA-BR-6453-01A-11D-1800-08	237	234	3	171	1.265823e-02	0	coding only	34834024	63	165	1.808577e-06	4.736748e-06
TCGA-BR-6454-01A-11D-1800-08	176	174	2	130	1.136364e-02	0	coding only	34834024	44	127	1.263133e-06	3.645861e-06
TCGA-BR-6455-01A-11D-1800-08	119	116	3	76	2.521008e-02	0	coding only	34834024	38	74	1.090887e-06	2.124360e-06
TCGA-BR-6456-01A-11D-1800-08	54	53	1	39	1.851852e-02	0	coding only	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-BR-6457-01A-21D-1800-08	150	149	1	111	6.666667e-03	0	coding only	34834024	37	110	1.062180e-06	3.157832e-06
TCGA-BR-6458-01A-11D-1800-08	352	346	6	257	1.704545e-02	0	coding only	34834024	89	254	2.554973e-06	7.291721e-06
TCGA-BR-6563-01A-13D-2053-08	95	94	1	73	1.052632e-02	0	coding only	34834024	21	71	6.028589e-07	2.038237e-06
TCGA-BR-6564-01A-12D-1882-08	47	44	3	31	6.382979e-02	0	coding only	34834024	12	29	3.444908e-07	8.325194e-07
TCGA-BR-6565-01A-11D-1800-08	172	170	2	135	1.162791e-02	0	coding only	34834024	35	131	1.004765e-06	3.760691e-06
TCGA-BR-6566-01A-11D-1800-08	1078	1065	13	759	1.205937e-02	0	coding only	34834024	301	751	8.640977e-06	2.155938e-05
TCGA-BR-6705-01A-12D-1882-08	128	124	4	96	3.125000e-02	0	coding only	34834024	27	96	7.751042e-07	2.755926e-06
TCGA-BR-6706-01A-11D-1882-08	266	264	2	207	7.518797e-03	0	coding only	34834024	55	206	1.578916e-06	5.913758e-06
TCGA-BR-6707-01A-11D-1882-08	85	84	1	64	1.176471e-02	0	coding only	34834024	19	64	5.454437e-07	1.837284e-06
TCGA-BR-6710-01A-11D-1882-08	1	1	0	0	0	0	coding only	34834024	0	0	0	0
TCGA-BR-6801-01A-11D-1882-08	62	61	1	40	1.612903e-02	0	coding only	34834024	19	40	5.454437e-07	1.148303e-06
TCGA-BR-6802-01A-11D-1882-08	553	545	8	378	1.446655e-02	0	coding only	34834024	166	371	4.765456e-06	1.065051e-05
TCGA-BR-6803-01A-11D-1882-08	24	22	2	18	8.333333e-02	0	coding only	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-BR-6852-01A-11D-1882-08	1259	1236	23	889	1.826847e-02	0	coding only	34834024	342	883	9.817987e-06	2.534878e-05
TCGA-BR-7196-01A-11D-2053-08	85	84	1	61	1.176471e-02	0	coding only	34834024	23	60	6.602740e-07	1.722454e-06
TCGA-BR-7197-01A-11D-2201-08	204	199	5	150	2.450980e-02	0	coding only	34834024	46	144	1.320548e-06	4.133889e-06
TCGA-BR-7703-01A-11D-2053-08	823	811	12	598	1.458080e-02	0	coding only	34834024	212	589	6.086004e-06	1.690876e-05
TCGA-BR-7707-01A-11D-2053-08	1634	1609	25	1167	1.529988e-02	0	coding only	34834024	439	1152	1.260262e-05	3.307111e-05
TCGA-BR-7715-01A-11D-2053-08	171	168	3	128	1.754386e-02	0	coding only	34834024	40	127	1.148303e-06	3.645861e-06
TCGA-BR-7716-01A-21D-2053-08	196	193	3	144	1.530612e-02	0	coding only	34834024	45	142	1.291840e-06	4.076474e-06
TCGA-BR-7717-01A-11D-2053-08	166	165	1	115	6.024096e-03	0	coding only	34834024	50	115	1.435378e-06	3.301370e-06
TCGA-BR-7722-01A-31D-2201-08	65	63	2	49	3.076923e-02	0	coding only	34834024	14	48	4.019059e-07	1.377963e-06
TCGA-BR-7723-01A-11D-2053-08	198	193	5	142	2.525253e-02	0	coding only	34834024	50	137	1.435378e-06	3.932936e-06
TCGA-BR-7851-01A-11D-2201-08	1695	1681	14	1168	8.259587e-03	0	coding only	34834024	507	1150	1.455474e-05	3.301370e-05
TCGA-BR-7901-01A-11D-2201-08	245	245	0	175	0	0	coding only	34834024	70	172	2.009530e-06	4.937701e-06
TCGA-BR-7957-01A-11D-2201-08	65	64	1	50	1.538462e-02	0	coding only	34834024	14	49	4.019059e-07	1.406671e-06
TCGA-BR-8059-01A-11D-2340-08	732	724	8	538	1.092896e-02	0	coding only	34834024	180	533	5.167362e-06	1.530113e-05
TCGA-BR-8077-01A-11D-2340-08	142	135	7	104	4.929577e-02	1	exome+100bp flanks	34834024	29	102	8.325194e-07	2.928172e-06
TCGA-BR-8080-01A-11D-2340-08	177	171	6	135	3.389831e-02	1	exome+100bp flanks	34834024	36	132	1.033472e-06	3.789399e-06
TCGA-BR-8081-01A-11D-2340-08	950	938	12	641	1.263158e-02	0	coding only	34834024	291	634	8.353901e-06	1.820060e-05
TCGA-BR-8284-01A-11D-2340-08	358	350	8	248	2.234637e-02	0	coding only	34834024	101	245	2.899464e-06	7.033353e-06
TCGA-BR-8295-01A-11D-2340-08	60	59	1	42	1.666667e-02	0	coding only	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-BR-8296-01A-11D-2340-08	95	91	4	64	4.210526e-02	0	coding only	34834024	27	61	7.751042e-07	1.751161e-06
TCGA-BR-8360-01A-11D-2340-08	675	666	9	471	1.333333e-02	0	coding only	34834024	190	466	5.454437e-06	1.337773e-05
TCGA-BR-8361-01A-11D-2340-08	1710	1687	23	1234	1.345029e-02	0	coding only	34834024	448	1219	1.286099e-05	3.499452e-05
TCGA-BR-8365-01A-21D-2340-08	30	29	1	23	3.333333e-02	0	coding only	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-BR-8366-01A-11D-2340-08	193	192	1	153	5.181347e-03	0	coding only	34834024	37	148	1.062180e-06	4.248720e-06
TCGA-BR-8367-01A-11D-2340-08	77	72	5	53	6.493506e-02	1	exome+100bp flanks	34834024	18	53	5.167362e-07	1.521501e-06
TCGA-BR-8368-01A-11D-2340-08	1112	1099	13	777	1.169065e-02	0	coding only	34834024	315	773	9.042883e-06	2.219095e-05
TCGA-BR-8370-01A-11D-2340-08	125	122	3	86	2.400000e-02	0	coding only	34834024	35	84	1.004765e-06	2.411435e-06
TCGA-BR-8371-01A-11D-2340-08	23	23	0	15	0	0	coding only	34834024	8	15	2.296605e-07	4.306135e-07
TCGA-BR-8372-01A-11D-2340-08	1410	1385	25	1012	1.773050e-02	0	coding only	34834024	372	1002	1.067921e-05	2.876498e-05
TCGA-BR-8373-01A-11D-2340-08	121	114	7	74	5.785124e-02	1	exome+100bp flanks	34834024	39	69	1.119595e-06	1.980822e-06
TCGA-BR-8381-01A-11D-2394-08	147	141	6	99	4.081633e-02	1	exome+100bp flanks	34834024	41	99	1.177010e-06	2.842049e-06
TCGA-BR-8382-01A-11D-2394-08	949	939	10	661	1.053741e-02	0	coding only	34834024	271	649	7.779750e-06	1.863121e-05
TCGA-BR-8384-01A-21D-2394-08	48	46	2	39	4.166667e-02	0	coding only	34834024	7	39	2.009530e-07	1.119595e-06
TCGA-BR-8484-01A-11D-2394-08	107	101	6	66	5.607477e-02	1	exome+100bp flanks	34834024	34	61	9.760572e-07	1.751161e-06
TCGA-BR-8485-01A-11D-2394-08	358	352	6	264	1.675978e-02	0	coding only	34834024	88	260	2.526266e-06	7.463967e-06
TCGA-BR-8486-01A-31D-2394-08	61	60	1	47	1.639344e-02	0	coding only	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-BR-8588-01A-11D-2394-08	143	142	1	103	6.993007e-03	0	coding only	34834024	38	101	1.090887e-06	2.899464e-06
TCGA-BR-8589-01A-11D-2394-08	1272	1254	18	994	1.415094e-02	0	coding only	34834024	254	983	7.291721e-06	2.821954e-05
TCGA-BR-8590-01A-11D-2394-08	146	144	2	106	1.369863e-02	0	coding only	34834024	38	104	1.090887e-06	2.985587e-06
TCGA-BR-8591-01A-11D-2394-08	1569	1538	31	1103	1.975781e-02	0	coding only	34834024	433	1081	1.243038e-05	3.103288e-05
TCGA-BR-8676-01A-11D-2394-08	98	95	3	73	3.061224e-02	0	coding only	34834024	22	71	6.315664e-07	2.038237e-06
TCGA-BR-8677-01A-11D-2394-08	82	80	2	56	2.439024e-02	0	coding only	34834024	24	56	6.889816e-07	1.607624e-06
TCGA-BR-8678-01A-11D-2394-08	130	128	2	98	1.538462e-02	0	coding only	34834024	30	96	8.612269e-07	2.755926e-06
TCGA-BR-8679-01A-11D-2394-08	183	180	3	133	1.639344e-02	0	coding only	34834024	46	129	1.320548e-06	3.703276e-06
TCGA-BR-8680-01A-11D-2394-08	7000	6857	143	5356	2.042857e-02	0	coding only	34834024	1475	5276	4.234366e-05	1.514611e-04
TCGA-BR-8682-01A-11D-2394-08	83	80	3	54	3.614458e-02	0	coding only	34834024	24	52	6.889816e-07	1.492793e-06
TCGA-BR-8683-01A-11D-2394-08	173	172	1	128	5.780347e-03	0	coding only	34834024	42	124	1.205718e-06	3.559738e-06
TCGA-BR-8687-01A-11D-2394-08	211	205	6	153	2.843602e-02	0	coding only	34834024	52	149	1.492793e-06	4.277427e-06
TCGA-BR-8690-01A-11D-2394-08	183	177	6	130	3.278689e-02	1	exome+100bp flanks	34834024	47	128	1.349256e-06	3.674568e-06
TCGA-BR-A4IV-01A-31D-A25D-08	29	27	2	20	6.896552e-02	0	coding only	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-BR-A4IY-01A-11D-A25D-08	155	152	3	116	1.935484e-02	0	coding only	34834024	35	115	1.004765e-06	3.301370e-06
TCGA-BR-A4IZ-01A-32D-A25D-08	10	10	0	9	0	0	coding only	34834024	1	9	2.870756e-08	2.583681e-07
TCGA-BR-A4J1-01A-11D-A25D-08	86	80	6	58	6.976744e-02	1	exome+100bp flanks	34834024	21	56	6.028589e-07	1.607624e-06
TCGA-BR-A4J4-01A-12D-A25D-08	91	90	1	72	1.098901e-02	0	coding only	34834024	17	71	4.880286e-07	2.038237e-06
TCGA-BR-A4J6-01A-11D-A25D-08	42	40	2	28	4.761905e-02	0	coding only	34834024	11	27	3.157832e-07	7.751042e-07
TCGA-BR-A4J7-01A-31D-A25D-08	61	58	3	41	4.918033e-02	0	coding only	34834024	17	41	4.880286e-07	1.177010e-06
TCGA-BR-A4J8-01A-11D-A25D-08	120	114	6	70	5.000000e-02	1	exome+100bp flanks	34834024	44	69	1.263133e-06	1.980822e-06
TCGA-BR-A4QI-01A-12D-A25D-08	156	153	3	112	1.923077e-02	0	coding only	34834024	40	110	1.148303e-06	3.157832e-06
TCGA-BR-A4QL-01A-31D-A25D-08	2124	2096	28	1558	1.318267e-02	0	coding only	34834024	531	1536	1.524372e-05	4.409482e-05
TCGA-CD-5798-01A-11D-1600-08	106	103	3	77	2.830189e-02	0	coding only	34834024	26	75	7.463967e-07	2.153067e-06
TCGA-CD-5799-01A-11D-1600-08	61	58	3	38	4.918033e-02	0	coding only	34834024	19	37	5.454437e-07	1.062180e-06
TCGA-CD-5800-01A-11D-1600-08	187	185	2	140	1.069519e-02	0	coding only	34834024	44	137	1.263133e-06	3.932936e-06
TCGA-CD-5801-01A-11D-1600-08	616	609	7	470	1.136364e-02	0	coding only	34834024	138	466	3.961644e-06	1.337773e-05
TCGA-CD-5802-01A-11D-1600-08	58	58	0	44	0	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-CD-5803-01A-11D-1600-08	48	48	0	37	0	0	coding only	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-CD-5804-01A-12D-2053-08	103	102	1	77	9.708738e-03	0	coding only	34834024	25	77	7.176891e-07	2.210482e-06
TCGA-CD-5813-01A-11D-1600-08	210	203	7	154	3.333333e-02	1	exome+100bp flanks	34834024	47	150	1.349256e-06	4.306135e-06
TCGA-CD-8524-01A-11D-2340-08	172	168	4	129	2.325581e-02	0	coding only	34834024	37	126	1.062180e-06	3.617153e-06
TCGA-CD-8525-01A-11D-2340-08	94	89	5	68	5.319149e-02	1	exome+100bp flanks	34834024	19	67	5.454437e-07	1.923407e-06
TCGA-CD-8526-01A-11D-2340-08	53	47	6	41	1.132075e-01	1	exome+100bp flanks	34834024	6	39	1.722454e-07	1.119595e-06
TCGA-CD-8528-01A-11D-2340-08	124	120	4	90	3.225806e-02	0	coding only	34834024	29	89	8.325194e-07	2.554973e-06
TCGA-CD-8529-01A-11D-2340-08	449	443	6	332	1.336303e-02	0	coding only	34834024	110	328	3.157832e-06	9.416081e-06
TCGA-CD-8530-01A-11D-2340-08	111	105	6	75	5.405405e-02	1	exome+100bp flanks	34834024	29	71	8.325194e-07	2.038237e-06
TCGA-CD-8531-01A-11D-2340-08	293	268	25	204	8.532423e-02	1	exome+100bp flanks	34834024	63	198	1.808577e-06	5.684098e-06
TCGA-CD-8532-01A-11D-2340-08	58	53	5	33	8.620690e-02	1	exome+100bp flanks	34834024	19	31	5.454437e-07	8.899345e-07
TCGA-CD-8534-01A-11D-2340-08	92	85	7	66	7.608696e-02	1	exome+100bp flanks	34834024	19	65	5.454437e-07	1.865992e-06
TCGA-CD-8535-01A-11D-2340-08	315	309	6	222	1.904762e-02	0	coding only	34834024	85	214	2.440143e-06	6.143419e-06
TCGA-CD-A4MI-01A-21D-A25D-08	1076	1070	6	757	5.576208e-03	0	coding only	34834024	307	752	8.813222e-06	2.158809e-05
TCGA-CD-A4MJ-01A-11D-A25D-08	723	714	9	531	1.244813e-02	0	coding only	34834024	181	527	5.196069e-06	1.512889e-05
TCGA-CG-4300-01A-01D-1158-08	175	172	3	129	1.714286e-02	0	coding only	34834024	41	125	1.177010e-06	3.588446e-06
TCGA-CG-4301-01A-01D-1158-08	66	64	2	48	3.030303e-02	0	coding only	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-CG-4304-01A-01D-1158-08	85	85	0	55	0	0	coding only	34834024	29	54	8.325194e-07	1.550208e-06
TCGA-CG-4305-01A-01D-1158-08	1239	1228	11	869	8.878128e-03	0	coding only	34834024	352	857	1.010506e-05	2.460238e-05
TCGA-CG-4306-01A-01D-1158-08	1183	1169	14	836	1.183432e-02	0	coding only	34834024	331	827	9.502204e-06	2.374116e-05
TCGA-CG-4436-01A-01D-1158-08	213	210	3	160	1.408451e-02	0	coding only	34834024	50	158	1.435378e-06	4.535795e-06
TCGA-CG-4437-01A-01D-1800-08	592	582	10	444	1.689189e-02	0	coding only	34834024	137	440	3.932936e-06	1.263133e-05
TCGA-CG-4438-01A-01D-1158-08	166	159	7	126	4.216867e-02	1	exome+100bp flanks	34834024	32	124	9.186421e-07	3.559738e-06
TCGA-CG-4440-01A-01D-1158-08	140	138	2	113	1.428571e-02	0	coding only	34834024	25	113	7.176891e-07	3.243955e-06
TCGA-CG-4441-01A-01D-1800-08	146	141	5	101	3.424658e-02	1	exome+100bp flanks	34834024	38	99	1.090887e-06	2.842049e-06
TCGA-CG-4442-01A-01D-1158-08	1812	1784	28	1301	1.545254e-02	0	coding only	34834024	475	1286	1.363609e-05	3.691793e-05
TCGA-CG-4443-01A-01D-1158-08	121	115	6	81	4.958678e-02	1	exome+100bp flanks	34834024	33	80	9.473496e-07	2.296605e-06
TCGA-CG-4444-01A-01D-1158-08	213	212	1	151	4.694836e-03	0	coding only	34834024	61	148	1.751161e-06	4.248720e-06
TCGA-CG-4449-01A-01D-1158-08	121	120	1	94	8.264463e-03	0	coding only	34834024	26	91	7.463967e-07	2.612388e-06
TCGA-CG-4455-01A-01D-1158-08	59	58	1	38	1.694915e-02	0	coding only	34834024	20	38	5.741513e-07	1.090887e-06
TCGA-CG-4462-01A-01D-1158-08	91	90	1	60	1.098901e-02	0	coding only	34834024	30	59	8.612269e-07	1.693746e-06
TCGA-CG-4465-01A-01D-1158-08	700	693	7	506	1.000000e-02	0	coding only	34834024	182	501	5.224777e-06	1.438249e-05
TCGA-CG-4466-01A-01D-1158-08	244	233	11	177	4.508197e-02	1	exome+100bp flanks	34834024	55	174	1.578916e-06	4.995116e-06
TCGA-CG-4469-01A-01D-1158-08	368	363	5	285	1.358696e-02	0	coding only	34834024	76	273	2.181775e-06	7.837165e-06
TCGA-CG-4474-01A-02D-1158-08	112	110	2	82	1.785714e-02	0	coding only	34834024	28	81	8.038118e-07	2.325313e-06
TCGA-CG-4475-01A-01D-1158-08	64	60	4	42	6.250000e-02	0	coding only	34834024	17	42	4.880286e-07	1.205718e-06
TCGA-CG-4476-01A-01D-1158-08	152	149	3	123	1.973684e-02	0	coding only	34834024	26	121	7.463967e-07	3.473615e-06
TCGA-CG-4477-01A-01D-1158-08	81	78	3	57	3.703704e-02	0	coding only	34834024	21	56	6.028589e-07	1.607624e-06
TCGA-CG-5717-01A-11D-1600-08	206	202	4	150	1.941748e-02	0	coding only	34834024	52	150	1.492793e-06	4.306135e-06
TCGA-CG-5718-01A-11D-1600-08	106	103	3	79	2.830189e-02	0	coding only	34834024	24	76	6.889816e-07	2.181775e-06
TCGA-CG-5719-01A-11D-1600-08	111	108	3	78	2.702703e-02	0	coding only	34834024	30	78	8.612269e-07	2.239190e-06
TCGA-CG-5720-01A-11D-1600-08	115	114	1	82	8.695652e-03	0	coding only	34834024	32	82	9.186421e-07	2.354020e-06
TCGA-CG-5721-01A-11D-1600-08	4770	4699	71	3385	1.488470e-02	0	coding only	34834024	1304	3351	3.743466e-05	9.619905e-05
TCGA-CG-5722-01A-21D-1600-08	105	104	1	75	9.523810e-03	0	coding only	34834024	29	74	8.325194e-07	2.124360e-06
TCGA-CG-5723-01A-11D-1600-08	1803	1778	25	1276	1.386578e-02	0	coding only	34834024	497	1262	1.426766e-05	3.622895e-05
TCGA-CG-5724-01A-11D-1600-08	143	138	5	106	3.496503e-02	1	exome+100bp flanks	34834024	32	103	9.186421e-07	2.956879e-06
TCGA-CG-5726-01A-11D-1600-08	1602	1583	19	1141	1.186017e-02	0	coding only	34834024	433	1129	1.243038e-05	3.241084e-05
TCGA-CG-5727-01A-11D-1600-08	185	182	3	128	1.621622e-02	0	coding only	34834024	54	127	1.550208e-06	3.645861e-06
TCGA-CG-5728-01A-11D-1600-08	1461	1441	20	1004	1.368925e-02	0	coding only	34834024	433	999	1.243038e-05	2.867886e-05
TCGA-CG-5730-01A-11D-1600-08	201	196	5	135	2.487562e-02	0	coding only	34834024	61	135	1.751161e-06	3.875521e-06
TCGA-CG-5732-01A-11D-1600-08	82	82	0	58	0	0	coding only	34834024	24	58	6.889816e-07	1.665039e-06
TCGA-CG-5733-01A-11D-1600-08	1264	1249	15	896	1.186709e-02	0	coding only	34834024	352	880	1.010506e-05	2.526266e-05
TCGA-CG-5734-01A-11D-1600-08	127	124	3	94	2.362205e-02	0	coding only	34834024	29	94	8.325194e-07	2.698511e-06
TCGA-D7-5577-01A-01D-1600-08	140	138	2	109	1.428571e-02	0	coding only	34834024	29	107	8.325194e-07	3.071709e-06
TCGA-D7-5578-01A-01D-1600-08	301	294	7	210	2.325581e-02	0	coding only	34834024	83	207	2.382728e-06	5.942466e-06
TCGA-D7-5579-01A-01D-1600-08	182	178	4	134	2.197802e-02	0	coding only	34834024	42	133	1.205718e-06	3.818106e-06
TCGA-D7-6518-01A-11D-1800-08	118	115	3	82	2.542373e-02	0	coding only	34834024	33	80	9.473496e-07	2.296605e-06
TCGA-D7-6519-01A-11D-1800-08	67	65	2	51	2.985075e-02	0	coding only	34834024	14	51	4.019059e-07	1.464086e-06
TCGA-D7-6520-01A-11D-1800-08	77	75	2	53	2.597403e-02	0	coding only	34834024	19	53	5.454437e-07	1.521501e-06
TCGA-D7-6521-01A-11D-1800-08	98	97	1	76	1.020408e-02	0	coding only	34834024	21	75	6.028589e-07	2.153067e-06
TCGA-D7-6522-01A-11D-1800-08	92	87	5	63	5.434783e-02	1	exome+100bp flanks	34834024	23	63	6.602740e-07	1.808577e-06
TCGA-D7-6524-01A-11D-1800-08	127	126	1	93	7.874016e-03	0	coding only	34834024	31	91	8.899345e-07	2.612388e-06
TCGA-D7-6525-01A-11D-1800-08	204	195	9	140	4.411765e-02	1	exome+100bp flanks	34834024	53	134	1.521501e-06	3.846814e-06
TCGA-D7-6526-01A-11D-1800-08	258	253	5	180	1.937984e-02	0	coding only	34834024	72	176	2.066945e-06	5.052531e-06
TCGA-D7-6527-01A-11D-1800-08	263	258	5	199	1.901141e-02	0	coding only	34834024	57	198	1.636331e-06	5.684098e-06
TCGA-D7-6528-01A-11D-1800-08	405	397	8	305	1.975309e-02	0	coding only	34834024	90	302	2.583681e-06	8.669685e-06
TCGA-D7-6815-01A-11D-1882-08	178	172	6	118	3.370787e-02	1	exome+100bp flanks	34834024	52	116	1.492793e-06	3.330078e-06
TCGA-D7-6817-01A-11D-1882-08	112	107	5	83	4.464286e-02	1	exome+100bp flanks	34834024	23	82	6.602740e-07	2.354020e-06
TCGA-D7-6818-01A-11D-1882-08	186	177	9	147	4.838710e-02	1	exome+100bp flanks	34834024	30	145	8.612269e-07	4.162597e-06
TCGA-D7-6820-01A-11D-1882-08	118	115	3	81	2.542373e-02	0	coding only	34834024	34	79	9.760572e-07	2.267898e-06
TCGA-D7-6822-01A-11D-1882-08	290	281	9	230	3.103448e-02	1	exome+100bp flanks	34834024	50	227	1.435378e-06	6.516617e-06
TCGA-D7-8570-01A-11D-2340-08	144	136	8	99	5.555556e-02	1	exome+100bp flanks	34834024	35	97	1.004765e-06	2.784634e-06
TCGA-D7-8572-01A-11D-2340-08	199	196	3	146	1.507538e-02	0	coding only	34834024	48	143	1.377963e-06	4.105182e-06
TCGA-D7-8573-01A-11D-2340-08	98	95	3	68	3.061224e-02	0	coding only	34834024	25	68	7.176891e-07	1.952114e-06
TCGA-D7-8574-01A-13D-2340-08	41	35	6	22	1.463415e-01	1	exome+100bp flanks	34834024	12	21	3.444908e-07	6.028589e-07
TCGA-D7-8576-01A-11D-2340-08	70	69	1	49	1.428571e-02	0	coding only	34834024	19	48	5.454437e-07	1.377963e-06
TCGA-D7-A4YT-01A-11D-A25D-08	325	320	5	229	1.538462e-02	0	coding only	34834024	91	225	2.612388e-06	6.459202e-06
TCGA-D7-A4YU-01A-21D-A25D-08	270	263	7	215	2.592593e-02	0	coding only	34834024	48	208	1.377963e-06	5.971173e-06
TCGA-D7-A4YV-01A-11D-A25D-08	953	944	9	677	9.443861e-03	0	coding only	34834024	262	668	7.521382e-06	1.917665e-05
TCGA-D7-A4Z0-01A-22D-A25D-08	348	341	7	268	2.011494e-02	0	coding only	34834024	69	262	1.980822e-06	7.521382e-06
TCGA-EQ-5647-01A-01D-1600-08	109	107	2	76	1.834862e-02	0	coding only	34834024	31	75	8.899345e-07	2.153067e-06
TCGA-F1-6177-01A-11D-1800-08	1519	1499	20	1102	1.316656e-02	0	coding only	34834024	395	1086	1.133949e-05	3.117642e-05
TCGA-F1-6874-01A-11D-1882-08	975	962	13	685	1.333333e-02	0	coding only	34834024	272	678	7.808458e-06	1.946373e-05
TCGA-F1-6875-01A-11D-2053-08	125	119	6	87	4.800000e-02	1	exome+100bp flanks	34834024	28	82	8.038118e-07	2.354020e-06
TCGA-FP-7735-01A-11D-2053-08	79	77	2	59	2.531646e-02	0	coding only	34834024	18	58	5.167362e-07	1.665039e-06
TCGA-FP-7829-01A-11D-2053-08	287	284	3	207	1.045296e-02	0	coding only	34834024	76	206	2.181775e-06	5.913758e-06
TCGA-FP-7916-01A-11D-2201-08	134	127	7	94	5.223881e-02	1	exome+100bp flanks	34834024	33	92	9.473496e-07	2.641096e-06
TCGA-FP-7998-01A-11D-2201-08	85	84	1	63	1.176471e-02	0	coding only	34834024	21	61	6.028589e-07	1.751161e-06
TCGA-FP-8099-01A-11D-2340-08	156	154	2	108	1.282051e-02	0	coding only	34834024	46	106	1.320548e-06	3.043002e-06
TCGA-FP-8209-01A-11D-2340-08	3	3	0	2	0	0	coding only	34834024	1	0	2.870756e-08	0
TCGA-HF-7132-01A-11D-2053-08	1350	1337	13	943	9.629630e-03	0	coding only	34834024	390	929	1.119595e-05	2.666933e-05
TCGA-HF-7133-01A-11D-2053-08	91	88	3	69	3.296703e-02	0	coding only	34834024	19	67	5.454437e-07	1.923407e-06
TCGA-HF-7136-01A-11D-2053-08	110	103	7	77	6.363636e-02	1	exome+100bp flanks	34834024	23	74	6.602740e-07	2.124360e-06
TCGA-HJ-7597-01A-21D-2201-08	880	874	6	608	6.818182e-03	0	coding only	34834024	266	605	7.636212e-06	1.736808e-05
TCGA-HU-8243-01A-11D-2340-08	143	140	3	102	2.097902e-02	0	coding only	34834024	37	98	1.062180e-06	2.813341e-06
TCGA-HU-8245-01A-11D-2340-08	74	73	1	57	1.351351e-02	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-HU-8604-01A-11D-2394-08	238	236	2	171	8.403361e-03	0	coding only	34834024	65	169	1.865992e-06	4.851578e-06
TCGA-HU-8610-01A-22D-2394-08	75	70	5	56	6.666667e-02	1	exome+100bp flanks	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-HU-A4G2-01A-11D-A25D-08	58	55	3	38	5.172414e-02	0	coding only	34834024	17	38	4.880286e-07	1.090887e-06
TCGA-HU-A4GD-01A-11D-A25D-08	106	98	8	73	7.547170e-02	1	exome+100bp flanks	34834024	24	71	6.889816e-07	2.038237e-06
TCGA-HU-A4GN-01A-11D-A25D-08	1292	1275	17	894	1.315789e-02	0	coding only	34834024	376	883	1.079404e-05	2.534878e-05
TCGA-HU-A4GP-01A-11D-A25D-08	219	214	5	149	2.283105e-02	0	coding only	34834024	64	145	1.837284e-06	4.162597e-06
TCGA-HU-A4GQ-01A-11D-A25D-08	1982	1949	33	1387	1.664985e-02	0	coding only	34834024	559	1368	1.604753e-05	3.927195e-05
TCGA-HU-A4GU-01A-11D-A25D-08	1677	1655	22	1176	1.311866e-02	0	coding only	34834024	477	1157	1.369351e-05	3.321465e-05
TCGA-HU-A4H3-01A-21D-A25D-08	1020	1003	17	735	1.666667e-02	0	coding only	34834024	263	727	7.550090e-06	2.087040e-05
TCGA-HU-A4H4-01A-21D-A25D-08	777	771	6	554	7.722008e-03	0	coding only	34834024	214	545	6.143419e-06	1.564562e-05
TCGA-HU-A4H5-01A-21D-A25D-08	300	293	7	232	2.333333e-02	0	coding only	34834024	60	227	1.722454e-06	6.516617e-06
TCGA-HU-A4H6-01A-11D-A25D-08	112	110	2	79	1.785714e-02	0	coding only	34834024	31	76	8.899345e-07	2.181775e-06
TCGA-IN-7806-01A-11D-2053-08	88	87	1	67	1.136364e-02	0	coding only	34834024	20	66	5.741513e-07	1.894699e-06
TCGA-IN-7808-01A-11D-2201-08	125	125	0	96	0	0	coding only	34834024	28	95	8.038118e-07	2.727219e-06
TCGA-IN-8462-01A-11D-2340-08	137	134	3	100	2.189781e-02	0	coding only	34834024	34	100	9.760572e-07	2.870756e-06
TCGA-IN-8663-01A-11D-2394-08	199	198	1	149	5.025126e-03	0	coding only	34834024	49	142	1.406671e-06	4.076474e-06
TCGA-IP-7968-01A-11D-2201-08	134	127	7	98	5.223881e-02	1	exome+100bp flanks	34834024	28	98	8.038118e-07	2.813341e-06