Molecular subtypes CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1q gain 0 (0%) 473 3.6843e-06 0.00139 0.084764 1 0.0031921 0.808 0.093129 1 0.010736 1 0.004026 0.99 0.2327 1 0.20287 1 0.18468 1 0.091713 1 4p gain 0 (0%) 490 1.8918e-05 0.00685 0.014899 1 NA NA NA NA 0.044379 1 0.02188 1 0.075512 1 0.067594 1 0.12891 1 0.094249 1 4q gain 0 (0%) 490 1.8918e-05 0.00685 0.014899 1 NA NA NA NA 0.044379 1 0.02188 1 0.075512 1 0.067594 1 0.12891 1 0.094249 1 5p gain 0 (0%) 477 7.684e-20 3.19e-17 0.00036602 0.111 0.83542 1 0.10692 1 0.0028592 0.729 0.00099485 0.285 0.0035707 0.893 0.00020362 0.066 0.006879 1 0.00013105 0.0435 5q gain 0 (0%) 480 2.8353e-18 1.17e-15 4.8562e-05 0.0168 1 1 0.028149 1 0.00023129 0.0729 8.8686e-05 0.0296 0.00043646 0.131 2.7891e-05 0.00979 0.0015497 0.422 2.1294e-05 0.00756 7p gain 0 (0%) 477 1.7646e-22 7.34e-20 0.00014877 0.0488 0.83542 1 0.010623 1 0.00053597 0.159 0.00011402 0.038 0.0026115 0.674 0.00025528 0.0794 0.00052737 0.157 0.00018415 0.06 7q gain 0 (0%) 475 1.9541e-23 8.15e-21 2.0571e-05 0.00732 0.80472 1 0.0020576 0.543 7.1075e-05 0.024 1.2292e-05 0.00451 0.00033226 0.102 2.2489e-05 0.00796 7.8199e-05 0.0264 1.6312e-05 0.00595 11p gain 0 (0%) 489 0.001342 0.373 0.0058116 1 NA NA NA NA 0.016067 1 0.0069008 1 0.0024878 0.648 0.0012037 0.338 0.0073505 1 0.0011125 0.316 11q gain 0 (0%) 490 0.00020688 0.0668 0.014899 1 NA NA NA NA 0.044379 1 0.02188 1 0.0083323 1 0.0046715 1 0.022746 1 0.0043874 1 12p gain 0 (0%) 483 1.0844e-12 4.45e-10 4.6751e-06 0.00176 1 1 0.028149 1 2.3231e-05 0.0082 4.8963e-06 0.00184 3.7454e-05 0.0131 1.2949e-05 0.00474 0.00014714 0.0484 9.1042e-06 0.00338 12q gain 0 (0%) 482 1.3385e-12 5.47e-10 1.5149e-06 0.000589 1 1 0.028149 1 7.5753e-06 0.00283 1.5696e-06 0.000607 1.2063e-05 0.00446 3.5719e-06 0.00136 5.0198e-05 0.0173 2.4251e-06 0.000931 13q gain 0 (0%) 491 0.00029964 0.0929 0.058497 1 NA NA NA NA 0.098454 1 0.078835 1 0.20674 1 0.35468 1 0.32276 1 0.26956 1 14q gain 0 (0%) 486 5.2038e-09 2.08e-06 0.00013927 0.0461 1 1 0.25012 1 0.00064475 0.189 0.00021781 0.0697 0.0010616 0.303 0.00057309 0.17 0.0034405 0.864 0.00058696 0.173 16p gain 0 (0%) 482 5.8584e-14 2.42e-11 1.2083e-05 0.00446 0.79533 1 0.036322 1 0.00022477 0.071 4.5604e-05 0.0158 0.00018061 0.0591 4.6709e-05 0.0162 0.0003881 0.117 2.4189e-05 0.00851 16q gain 0 (0%) 484 6.0257e-13 2.48e-10 6.6032e-05 0.0225 1 1 0.12606 1 0.0018107 0.491 0.0004147 0.125 0.0014006 0.388 0.00063667 0.187 0.0027802 0.712 0.00050024 0.15 17p gain 0 (0%) 482 1.9897e-09 8.02e-07 1.5149e-06 0.000589 0.77299 1 0.012195 1 7.5753e-06 0.00283 1.5696e-06 0.000607 1.2063e-05 0.00446 3.5719e-06 0.00136 5.0198e-05 0.0173 2.4251e-06 0.000931 17q gain 0 (0%) 481 3.7981e-09 1.53e-06 3.339e-07 0.000132 0.79533 1 0.01926 1 2.2204e-06 0.000855 3.348e-07 0.000132 3.8565e-06 0.00145 9.758e-07 0.000383 1.6948e-05 0.00617 6.3764e-07 0.000251 18p gain 0 (0%) 491 0.0024627 0.648 0.058497 1 NA NA NA NA 0.098454 1 0.078835 1 0.027774 1 0.018024 1 0.070089 1 0.017199 1 18q gain 0 (0%) 491 0.0024627 0.648 0.058497 1 NA NA NA NA 0.098454 1 0.078835 1 0.027774 1 0.018024 1 0.070089 1 0.017199 1 19p gain 0 (0%) 490 1.8918e-05 0.00685 0.014899 1 NA NA NA NA 0.044379 1 0.02188 1 0.0083323 1 0.0046715 1 0.022746 1 0.0043874 1 19q gain 0 (0%) 489 1.1583e-06 0.000453 0.0058116 1 0.63581 1 0.052318 1 0.016067 1 0.0069008 1 0.0024878 0.648 0.0012037 0.338 0.0073505 1 0.0011125 0.316 20p gain 0 (0%) 485 1.169e-11 4.77e-09 0.00025132 0.0787 1 1 0.079008 1 0.0046736 1 0.0018272 0.493 0.0038172 0.95 0.0018769 0.503 0.0056615 1 0.0014924 0.412 20q gain 0 (0%) 485 1.169e-11 4.77e-09 0.00025132 0.0787 1 1 0.079008 1 0.0046736 1 0.0018272 0.493 0.0038172 0.95 0.0018769 0.503 0.0056615 1 0.0014924 0.412 21q gain 0 (0%) 491 0.0024627 0.648 0.058497 1 NA NA NA NA 0.098454 1 0.078835 1 0.027774 1 0.018024 1 0.070089 1 0.017199 1 1p loss 0 (0%) 491 0.00029964 0.0929 0.58225 1 NA NA NA NA 0.49332 1 0.18316 1 0.20674 1 0.35468 1 0.32276 1 0.26956 1 2p loss 0 (0%) 486 5.2038e-09 2.08e-06 0.00013927 0.0461 1 1 0.079008 1 0.00064475 0.189 0.00021781 0.0697 6.4312e-05 0.022 1.9869e-05 0.00709 0.00024177 0.0759 1.749e-05 0.00635 2q loss 0 (0%) 487 3.9413e-09 1.58e-06 0.00034264 0.105 0.83857 1 0.052094 1 0.0015285 0.419 0.00067458 0.196 0.00021857 0.0697 7.8506e-05 0.0264 0.00075785 0.218 7.0248e-05 0.0239 3q loss 0 (0%) 491 0.00029964 0.0929 0.058497 1 NA NA NA NA 0.098454 1 0.078835 1 0.027774 1 0.018024 1 0.070089 1 0.017199 1 6q loss 0 (0%) 491 0.021866 1 0.058497 1 NA NA NA NA 0.098454 1 0.078835 1 0.027774 1 0.018024 1 0.070089 1 0.017199 1 8p loss 0 (0%) 490 1.8918e-05 0.00685 0.014899 1 NA NA NA NA 0.044379 1 0.02188 1 0.0083323 1 0.0046715 1 0.022746 1 0.0043874 1 8q loss 0 (0%) 490 1.8918e-05 0.00685 0.014899 1 NA NA NA NA 0.044379 1 0.02188 1 0.0083323 1 0.0046715 1 0.022746 1 0.0043874 1 9p loss 0 (0%) 482 2.1328e-11 8.66e-09 0.071234 1 0.56009 1 0.20432 1 0.092442 1 0.13352 1 0.050635 1 0.040118 1 0.079206 1 0.02758 1 9q loss 0 (0%) 477 1.5913e-13 6.56e-11 0.11081 1 0.20921 1 0.0039572 0.977 0.18162 1 0.23073 1 0.075892 1 0.087841 1 0.10833 1 0.055457 1 10p loss 0 (0%) 488 6.8691e-08 2.73e-05 0.026273 1 NA NA NA NA 0.050891 1 0.01825 1 0.009288 1 0.0065835 1 0.025931 1 0.0066445 1 10q loss 0 (0%) 489 1.1583e-06 0.000453 0.075718 1 NA NA NA NA 0.11924 1 0.036109 1 0.026783 1 0.02148 1 0.068735 1 0.021643 1 11p loss 0 (0%) 487 7.9811e-08 3.17e-05 0.0095599 1 0.49518 1 1 1 0.00712 1 0.017391 1 0.0031635 0.804 0.0019635 0.522 0.0095409 1 0.001992 0.528 11q loss 0 (0%) 485 3.2751e-06 0.00125 0.01058 1 0.32096 1 0.79392 1 0.018482 1 0.016975 1 0.0003518 0.107 0.0033576 0.846 0.00122 0.34 0.0027455 0.706 13q loss 0 (0%) 483 0.012216 1 0.024336 1 0.077399 1 1 1 0.023275 1 0.018284 1 0.0090216 1 0.009971 1 0.0068378 1 0.010718 1 15q loss 0 (0%) 487 0.00065349 0.19 0.00034264 0.105 0.45688 1 0.25012 1 0.0015285 0.419 0.00067458 0.196 0.00021857 0.0697 7.8506e-05 0.0264 0.00075785 0.218 7.0248e-05 0.0239 17p loss 0 (0%) 487 0.0011822 0.333 0.52459 1 1 1 0.28386 1 0.78631 1 0.88728 1 0.51904 1 0.49263 1 0.90013 1 0.43999 1 18p loss 0 (0%) 490 0.00020688 0.0668 0.22031 1 1 1 0.28386 1 0.24176 1 0.12074 1 0.11474 1 0.03699 1 0.022746 1 0.04024 1 18q loss 0 (0%) 490 0.00020688 0.0668 0.22031 1 1 1 0.28386 1 0.24176 1 0.12074 1 0.11474 1 0.03699 1 0.022746 1 0.04024 1 19p loss 0 (0%) 490 0.13197 1 0.014899 1 0.27791 1 0.36437 1 0.044379 1 0.02188 1 0.0083323 1 0.0046715 1 0.022746 1 0.0043874 1 21q loss 0 (0%) 488 0.00019094 0.0621 0.097294 1 0.38382 1 0.052318 1 0.2228 1 0.22594 1 0.068404 1 0.084071 1 0.089216 1 0.045909 1 22q loss 0 (0%) 429 4.9762e-57 2.08e-54 4.4435e-05 0.0155 0.057785 1 0.24438 1 6.8385e-11 2.77e-08 8.0693e-11 3.26e-08 3.2448e-05 0.0114 5.2962e-06 0.00198 1.5572e-07 6.17e-05 3.0879e-06 0.00118