Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(Xq22.3)	0 (0%)	478	1.6363e-06	0.000422	0.51386	1	1	1	0.12606	1	0.62331	1	0.5975	1	0.85543	1	0.65115	1	0.85543	1	0.55458	1
Del Peak  2(2p23.1)	0 (0%)	482	3.5784e-10	9.8e-08	1.2083e-05	0.00297	0.77299	1	0.012195	1	7.5753e-06	0.00189	6.3192e-06	0.00158	4.5852e-07	0.000121	7.6641e-08	2.05e-05	2.3963e-06	0.000616	6.3095e-08	1.7e-05
Del Peak  3(2q35)	0 (0%)	483	6.3295e-12	1.74e-09	4.6751e-06	0.00119	0.56188	1	0.0025654	0.493	2.3231e-05	0.00555	4.8963e-06	0.00124	1.59e-06	0.000412	3.1043e-07	8.23e-05	7.6455e-06	0.0019	2.5993e-07	6.91e-05
Del Peak  4(5p15.2)	0 (0%)	490	0.34814	1	0.39424	1	NA	NA	NA	NA	0.42377	1	0.48036	1	0.5555	1	0.5777	1	0.47604	1	0.68438	1
Del Peak  6(6q22.31)	0 (0%)	488	0.00036422	0.0823	0.0050459	0.903	0.038133	1	0.79392	1	0.016067	1	0.0069008	1	0.009288	1	0.0065835	1	0.025931	1	0.0066445	1
Del Peak  8(7q34)	0 (0%)	490	0.63996	1	0.64949	1	NA	NA	NA	NA	0.74422	1	0.39489	1	0.69066	1	0.8216	1	1	1	0.82784	1
Del Peak  9(8p23.2)	0 (0%)	490	1.8918e-05	0.00464	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	0.85	0.022746	1	0.0043874	0.825
Del Peak 10(8p22)	0 (0%)	490	1.8918e-05	0.00464	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	0.85	0.022746	1	0.0043874	0.825
Del Peak 11(8p12)	0 (0%)	490	1.8918e-05	0.00464	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	0.85	0.022746	1	0.0043874	0.825
Del Peak 12(8q24.22)	0 (0%)	487	4.6185e-05	0.0109	0.00034264	0.0778	0.83857	1	0.052094	1	0.0015285	0.315	0.00067458	0.146	0.00021857	0.0505	7.8506e-05	0.0184	0.00075785	0.162	7.0248e-05	0.0165
Del Peak 13(9q21.13)	0 (0%)	471	1.1705e-13	3.23e-11	0.068614	1	0.21096	1	0.010184	1	0.096074	1	0.09776	1	0.013973	1	0.01313	1	0.01503	1	0.0080775	1
Del Peak 14(10q21.2)	0 (0%)	483	0.00055703	0.124	0.16257	1	0.13299	1	1	1	0.033589	1	0.24235	1	0.23471	1	0.087197	1	0.063232	1	0.12638	1
Del Peak 15(10q23.31)	0 (0%)	483	3.37e-05	0.00802	0.011193	1	0.032782	1	0.048331	1	0.0018273	0.362	0.0014363	0.297	0.011743	1	0.0053206	0.942	0.0010478	0.221	0.0035781	0.68
Del Peak 16(11p15.1)	0 (0%)	487	7.9811e-08	2.13e-05	0.0095599	1	0.49518	1	1	1	0.00712	1	0.017391	1	0.0031635	0.604	0.0019635	0.385	0.0095409	1	0.001992	0.388
Del Peak 17(13q12.3)	0 (0%)	479	0.022769	1	0.0019197	0.378	0.38997	1	0.43163	1	0.0017433	0.35	0.01811	1	0.065787	1	0.018086	1	0.024271	1	0.013574	1
Del Peak 18(13q21.31)	0 (0%)	477	0.027041	1	0.042364	1	0.12	1	1	1	0.0023021	0.447	0.00077207	0.164	0.0081288	1	0.0053857	0.948	0.0078613	1	0.005221	0.929
Del Peak 19(15q25.3)	0 (0%)	486	0.0013259	0.278	0.0036868	0.697	0.4435	1	0.079008	1	0.011264	1	0.0061367	1	0.001684	0.34	0.00057309	0.127	0.004541	0.831	0.00058696	0.129
Del Peak 21(16q23.3)	0 (0%)	488	0.048336	1	0.074356	1	0.4435	1	0.10153	1	0.10334	1	0.38612	1	0.19715	1	0.38708	1	0.29429	1	0.29336	1
Del Peak 22(17p13.1)	0 (0%)	486	0.0018185	0.362	0.33489	1	1	1	0.28386	1	0.63148	1	0.62591	1	0.3301	1	0.3067	1	0.67242	1	0.28245	1
Del Peak 23(18p11.21)	0 (0%)	490	0.00020688	0.0482	0.22031	1	1	1	0.28386	1	0.24176	1	0.12074	1	0.11474	1	0.03699	1	0.022746	1	0.04024	1
Del Peak 24(18q22.2)	0 (0%)	489	0.001342	0.28	0.075718	1	1	1	0.25012	1	0.11924	1	0.036109	1	0.041522	1	0.011545	1	0.0073505	1	0.012716	1
Del Peak 25(19p13.2)	0 (0%)	488	0.0045176	0.831	0.0013892	0.289	0.68117	1	0.25012	1	0.0044643	0.826	0.0017751	0.355	0.0007392	0.159	0.00030833	0.0706	0.0023653	0.456	0.00028042	0.0645
Del Peak 28(21q21.1)	0 (0%)	485	5.665e-05	0.0134	0.48617	1	0.14755	1	0.20432	1	0.40605	1	0.57755	1	0.052632	1	0.26638	1	0.053681	1	0.04365	1
Del Peak 29(22q13.1)	0 (0%)	409	1.1929e-90	3.34e-88	2.1816e-05	0.00528	0.12357	1	0.20917	1	1.2178e-08	3.31e-06	1.4445e-06	0.000378	0.0016569	0.34	0.0006579	0.144	6.0974e-06	0.00154	0.00038732	0.0871
Del Peak 30(22q13.2)	0 (0%)	409	1.1929e-90	3.34e-88	2.1816e-05	0.00528	0.12357	1	0.20917	1	1.2178e-08	3.31e-06	1.4445e-06	0.000378	0.0016569	0.34	0.0006579	0.144	6.0974e-06	0.00154	0.00038732	0.0871
Del Peak 31(22q13.31)	0 (0%)	409	1.1929e-90	3.34e-88	2.1816e-05	0.00528	0.12357	1	0.20917	1	1.2178e-08	3.31e-06	1.4445e-06	0.000378	0.0016569	0.34	0.0006579	0.144	6.0974e-06	0.00154	0.00038732	0.0871
Del Peak 32(22q13.32)	0 (0%)	408	9.679e-89	2.68e-86	1.108e-05	0.00274	0.12357	1	0.20917	1	6.4737e-09	1.77e-06	7.1541e-07	0.000188	0.00094322	0.2	0.00033729	0.0769	2.9534e-06	0.000756	0.00021199	0.0492
Del Peak 33(Xq22.1)	0 (0%)	488	0.073625	1	0.5511	1	0.097671	1	0.11797	1	0.59278	1	0.70527	1	0.52551	1	0.29381	1	0.70256	1	0.34146	1
Del Peak 34(Xq22.3)	0 (0%)	490	0.05384	1	0.05941	1	0.27791	1	0.36437	1	0.094708	1	0.25757	1	0.11474	1	0.03699	1	0.2256	1	0.04024	1