		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	0 (0%)	473	3.6843e-06	0.00139	0.084764	1	0.0031921	0.808	0.093129	1	0.010736	1	0.004026	0.99	0.2327	1	0.20287	1	0.18468	1	0.091713	1
4p gain	0 (0%)	490	1.8918e-05	0.00685	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.075512	1	0.067594	1	0.12891	1	0.094249	1
4q gain	0 (0%)	490	1.8918e-05	0.00685	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.075512	1	0.067594	1	0.12891	1	0.094249	1
5p gain	0 (0%)	477	7.684e-20	3.19e-17	0.00036602	0.111	0.83542	1	0.10692	1	0.0028592	0.729	0.00099485	0.285	0.0035707	0.893	0.00020362	0.066	0.006879	1	0.00013105	0.0435
5q gain	0 (0%)	480	2.8353e-18	1.17e-15	4.8562e-05	0.0168	1	1	0.028149	1	0.00023129	0.0729	8.8686e-05	0.0296	0.00043646	0.131	2.7891e-05	0.00979	0.0015497	0.422	2.1294e-05	0.00756
7p gain	0 (0%)	477	1.7646e-22	7.34e-20	0.00014877	0.0488	0.83542	1	0.010623	1	0.00053597	0.159	0.00011402	0.038	0.0026115	0.674	0.00025528	0.0794	0.00052737	0.157	0.00018415	0.06
7q gain	0 (0%)	475	1.9541e-23	8.15e-21	2.0571e-05	0.00732	0.80472	1	0.0020576	0.543	7.1075e-05	0.024	1.2292e-05	0.00451	0.00033226	0.102	2.2489e-05	0.00796	7.8199e-05	0.0264	1.6312e-05	0.00595
11p gain	0 (0%)	489	0.001342	0.373	0.0058116	1	NA	NA	NA	NA	0.016067	1	0.0069008	1	0.0024878	0.648	0.0012037	0.338	0.0073505	1	0.0011125	0.316
11q gain	0 (0%)	490	0.00020688	0.0668	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
12p gain	0 (0%)	483	1.0844e-12	4.45e-10	4.6751e-06	0.00176	1	1	0.028149	1	2.3231e-05	0.0082	4.8963e-06	0.00184	3.7454e-05	0.0131	1.2949e-05	0.00474	0.00014714	0.0484	9.1042e-06	0.00338
12q gain	0 (0%)	482	1.3385e-12	5.47e-10	1.5149e-06	0.000589	1	1	0.028149	1	7.5753e-06	0.00283	1.5696e-06	0.000607	1.2063e-05	0.00446	3.5719e-06	0.00136	5.0198e-05	0.0173	2.4251e-06	0.000931
13q gain	0 (0%)	491	0.00029964	0.0929	0.058497	1	NA	NA	NA	NA	0.098454	1	0.078835	1	0.20674	1	0.35468	1	0.32276	1	0.26956	1
14q gain	0 (0%)	486	5.2038e-09	2.08e-06	0.00013927	0.0461	1	1	0.25012	1	0.00064475	0.189	0.00021781	0.0697	0.0010616	0.303	0.00057309	0.17	0.0034405	0.864	0.00058696	0.173
16p gain	0 (0%)	482	5.8584e-14	2.42e-11	1.2083e-05	0.00446	0.79533	1	0.036322	1	0.00022477	0.071	4.5604e-05	0.0158	0.00018061	0.0591	4.6709e-05	0.0162	0.0003881	0.117	2.4189e-05	0.00851
16q gain	0 (0%)	484	6.0257e-13	2.48e-10	6.6032e-05	0.0225	1	1	0.12606	1	0.0018107	0.491	0.0004147	0.125	0.0014006	0.388	0.00063667	0.187	0.0027802	0.712	0.00050024	0.15
17p gain	0 (0%)	482	1.9897e-09	8.02e-07	1.5149e-06	0.000589	0.77299	1	0.012195	1	7.5753e-06	0.00283	1.5696e-06	0.000607	1.2063e-05	0.00446	3.5719e-06	0.00136	5.0198e-05	0.0173	2.4251e-06	0.000931
17q gain	0 (0%)	481	3.7981e-09	1.53e-06	3.339e-07	0.000132	0.79533	1	0.01926	1	2.2204e-06	0.000855	3.348e-07	0.000132	3.8565e-06	0.00145	9.758e-07	0.000383	1.6948e-05	0.00617	6.3764e-07	0.000251
18p gain	0 (0%)	491	0.0024627	0.648	0.058497	1	NA	NA	NA	NA	0.098454	1	0.078835	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
18q gain	0 (0%)	491	0.0024627	0.648	0.058497	1	NA	NA	NA	NA	0.098454	1	0.078835	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
19p gain	0 (0%)	490	1.8918e-05	0.00685	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
19q gain	0 (0%)	489	1.1583e-06	0.000453	0.0058116	1	0.63581	1	0.052318	1	0.016067	1	0.0069008	1	0.0024878	0.648	0.0012037	0.338	0.0073505	1	0.0011125	0.316
20p gain	0 (0%)	485	1.169e-11	4.77e-09	0.00025132	0.0787	1	1	0.079008	1	0.0046736	1	0.0018272	0.493	0.0038172	0.95	0.0018769	0.503	0.0056615	1	0.0014924	0.412
20q gain	0 (0%)	485	1.169e-11	4.77e-09	0.00025132	0.0787	1	1	0.079008	1	0.0046736	1	0.0018272	0.493	0.0038172	0.95	0.0018769	0.503	0.0056615	1	0.0014924	0.412
21q gain	0 (0%)	491	0.0024627	0.648	0.058497	1	NA	NA	NA	NA	0.098454	1	0.078835	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
1p loss	0 (0%)	491	0.00029964	0.0929	0.58225	1	NA	NA	NA	NA	0.49332	1	0.18316	1	0.20674	1	0.35468	1	0.32276	1	0.26956	1
2p loss	0 (0%)	486	5.2038e-09	2.08e-06	0.00013927	0.0461	1	1	0.079008	1	0.00064475	0.189	0.00021781	0.0697	6.4312e-05	0.022	1.9869e-05	0.00709	0.00024177	0.0759	1.749e-05	0.00635
2q loss	0 (0%)	487	3.9413e-09	1.58e-06	0.00034264	0.105	0.83857	1	0.052094	1	0.0015285	0.419	0.00067458	0.196	0.00021857	0.0697	7.8506e-05	0.0264	0.00075785	0.218	7.0248e-05	0.0239
3q loss	0 (0%)	491	0.00029964	0.0929	0.058497	1	NA	NA	NA	NA	0.098454	1	0.078835	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
6q loss	0 (0%)	491	0.021866	1	0.058497	1	NA	NA	NA	NA	0.098454	1	0.078835	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
8p loss	0 (0%)	490	1.8918e-05	0.00685	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
8q loss	0 (0%)	490	1.8918e-05	0.00685	0.014899	1	NA	NA	NA	NA	0.044379	1	0.02188	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
9p loss	0 (0%)	482	2.1328e-11	8.66e-09	0.071234	1	0.56009	1	0.20432	1	0.092442	1	0.13352	1	0.050635	1	0.040118	1	0.079206	1	0.02758	1
9q loss	0 (0%)	477	1.5913e-13	6.56e-11	0.11081	1	0.20921	1	0.0039572	0.977	0.18162	1	0.23073	1	0.075892	1	0.087841	1	0.10833	1	0.055457	1
10p loss	0 (0%)	488	6.8691e-08	2.73e-05	0.026273	1	NA	NA	NA	NA	0.050891	1	0.01825	1	0.009288	1	0.0065835	1	0.025931	1	0.0066445	1
10q loss	0 (0%)	489	1.1583e-06	0.000453	0.075718	1	NA	NA	NA	NA	0.11924	1	0.036109	1	0.026783	1	0.02148	1	0.068735	1	0.021643	1
11p loss	0 (0%)	487	7.9811e-08	3.17e-05	0.0095599	1	0.49518	1	1	1	0.00712	1	0.017391	1	0.0031635	0.804	0.0019635	0.522	0.0095409	1	0.001992	0.528
11q loss	0 (0%)	485	3.2751e-06	0.00125	0.01058	1	0.32096	1	0.79392	1	0.018482	1	0.016975	1	0.0003518	0.107	0.0033576	0.846	0.00122	0.34	0.0027455	0.706
13q loss	0 (0%)	483	0.012216	1	0.024336	1	0.077399	1	1	1	0.023275	1	0.018284	1	0.0090216	1	0.009971	1	0.0068378	1	0.010718	1
15q loss	0 (0%)	487	0.00065349	0.19	0.00034264	0.105	0.45688	1	0.25012	1	0.0015285	0.419	0.00067458	0.196	0.00021857	0.0697	7.8506e-05	0.0264	0.00075785	0.218	7.0248e-05	0.0239
17p loss	0 (0%)	487	0.0011822	0.333	0.52459	1	1	1	0.28386	1	0.78631	1	0.88728	1	0.51904	1	0.49263	1	0.90013	1	0.43999	1
18p loss	0 (0%)	490	0.00020688	0.0668	0.22031	1	1	1	0.28386	1	0.24176	1	0.12074	1	0.11474	1	0.03699	1	0.022746	1	0.04024	1
18q loss	0 (0%)	490	0.00020688	0.0668	0.22031	1	1	1	0.28386	1	0.24176	1	0.12074	1	0.11474	1	0.03699	1	0.022746	1	0.04024	1
19p loss	0 (0%)	490	0.13197	1	0.014899	1	0.27791	1	0.36437	1	0.044379	1	0.02188	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
21q loss	0 (0%)	488	0.00019094	0.0621	0.097294	1	0.38382	1	0.052318	1	0.2228	1	0.22594	1	0.068404	1	0.084071	1	0.089216	1	0.045909	1
22q loss	0 (0%)	429	4.9762e-57	2.08e-54	4.4435e-05	0.0155	0.057785	1	0.24438	1	6.8385e-11	2.77e-08	8.0693e-11	3.26e-08	3.2448e-05	0.0114	5.2962e-06	0.00198	1.5572e-07	6.17e-05	3.0879e-06	0.00118
