This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and subtypes.
Testing the association between copy number variation 80 arm-level results and 12 molecular subtypes across 504 patients, 198 significant findings detected with Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF'.
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2p gain cnv correlated to 'CN_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'CN_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF'.
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6q gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'CN_CNMF'.
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10q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF'.
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14q gain cnv correlated to 'CN_CNMF'.
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15q gain cnv correlated to 'CN_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF'.
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22q gain cnv correlated to 'CN_CNMF'.
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Xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF'.
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6q loss cnv correlated to 'CN_CNMF'.
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7p loss cnv correlated to 'CN_CNMF'.
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7q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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10q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF'.
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21q loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Xq loss cnv correlated to 'CN_CNMF'.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
15q loss | 0 (0%) | 420 |
0.00202 (1.00) |
0.000218 (0.143) |
6.8e-35 (5.71e-32) |
9.31e-12 (7.43e-09) |
0.00259 (1.00) |
0.267 (1.00) |
2.61e-10 (2.05e-07) |
4.49e-07 (0.000338) |
1.39e-14 (1.13e-11) |
4.72e-14 (3.82e-11) |
3.26e-06 (0.00239) |
9.96e-07 (0.00074) |
20q gain | 0 (0%) | 427 |
0.00809 (1.00) |
0.00105 (0.645) |
1.37e-29 (1.14e-26) |
6.66e-07 (0.000499) |
0.192 (1.00) |
0.58 (1.00) |
0.000315 (0.206) |
0.000351 (0.227) |
2.89e-08 (2.22e-05) |
4.3e-09 (3.34e-06) |
2.4e-05 (0.017) |
5.96e-07 (0.000447) |
16p loss | 0 (0%) | 431 |
0.00809 (1.00) |
0.00105 (0.645) |
1.54e-30 (1.29e-27) |
1.86e-09 (1.45e-06) |
0.105 (1.00) |
0.6 (1.00) |
3.47e-08 (2.65e-05) |
9.34e-07 (0.000695) |
4.64e-12 (3.72e-09) |
6.35e-11 (5.02e-08) |
5.75e-05 (0.0393) |
7.32e-06 (0.00529) |
16q loss | 0 (0%) | 390 |
0.00324 (1.00) |
0.000454 (0.291) |
7.72e-37 (6.49e-34) |
2.55e-11 (2.03e-08) |
0.237 (1.00) |
1 (1.00) |
8.89e-08 (6.77e-05) |
1.79e-06 (0.00132) |
9.45e-14 (7.64e-11) |
2.9e-10 (2.28e-07) |
2.02e-05 (0.0143) |
1.46e-07 (0.000111) |
17p loss | 0 (0%) | 393 |
0.00324 (1.00) |
0.000454 (0.291) |
4.96e-54 (4.18e-51) |
2.17e-12 (1.74e-09) |
0.000571 (0.362) |
0.665 (1.00) |
7.41e-06 (0.00535) |
0.000104 (0.07) |
2.24e-18 (1.84e-15) |
3.22e-10 (2.52e-07) |
9.27e-05 (0.0628) |
2.05e-06 (0.00151) |
8p loss | 0 (0%) | 448 |
0.00809 (1.00) |
0.00105 (0.645) |
4.17e-24 (3.47e-21) |
6.02e-11 (4.76e-08) |
0.165 (1.00) |
0.181 (1.00) |
0.00132 (0.797) |
1.5e-05 (0.0107) |
1.36e-13 (1.1e-10) |
2.72e-14 (2.21e-11) |
7.89e-07 (0.00059) |
1.32e-07 (0.000101) |
18p gain | 0 (0%) | 464 |
0.379 (1.00) |
0.0902 (1.00) |
1.75e-13 (1.41e-10) |
0.000133 (0.0891) |
0.093 (1.00) |
0.429 (1.00) |
0.000328 (0.213) |
0.0185 (1.00) |
1.97e-06 (0.00145) |
2.07e-09 (1.62e-06) |
0.000857 (0.536) |
8.35e-05 (0.0566) |
20p gain | 0 (0%) | 438 |
0.0391 (1.00) |
0.00466 (1.00) |
9.25e-25 (7.7e-22) |
4.83e-05 (0.0331) |
0.291 (1.00) |
1 (1.00) |
0.00685 (1.00) |
0.00251 (1.00) |
9.79e-06 (0.00704) |
4e-07 (0.000302) |
0.000207 (0.137) |
4.72e-05 (0.0325) |
4p loss | 0 (0%) | 437 |
0.0515 (1.00) |
0.00755 (1.00) |
1.19e-24 (9.88e-22) |
3.12e-10 (2.45e-07) |
0.0339 (1.00) |
0.393 (1.00) |
0.00158 (0.943) |
0.00103 (0.637) |
6.92e-12 (5.53e-09) |
1.6e-10 (1.26e-07) |
9.82e-05 (0.0664) |
5.67e-06 (0.00411) |
4q loss | 0 (0%) | 439 |
0.689 (1.00) |
0.272 (1.00) |
6.55e-25 (5.46e-22) |
3.05e-10 (2.39e-07) |
0.131 (1.00) |
0.776 (1.00) |
0.00154 (0.919) |
0.00315 (1.00) |
6.72e-07 (0.000503) |
4.34e-09 (3.37e-06) |
0.000244 (0.16) |
3.56e-05 (0.0249) |
14q loss | 0 (0%) | 461 |
0.00809 (1.00) |
0.00105 (0.645) |
7.51e-17 (6.15e-14) |
8.34e-09 (6.45e-06) |
0.0847 (1.00) |
0.0052 (1.00) |
0.0356 (1.00) |
0.0277 (1.00) |
1.24e-05 (0.00889) |
1.05e-11 (8.35e-09) |
4.6e-06 (0.00336) |
1.1e-05 (0.00791) |
19p loss | 0 (0%) | 468 |
5.04e-12 (4.03e-09) |
2.01e-09 (1.57e-06) |
0.285 (1.00) |
0.731 (1.00) |
0.0076 (1.00) |
0.00483 (1.00) |
1.35e-06 (0.000999) |
5.52e-07 (0.000415) |
1.42e-05 (0.0102) |
5.62e-08 (4.29e-05) |
||
19q loss | 0 (0%) | 475 |
1.19e-08 (9.21e-06) |
7.23e-06 (0.00523) |
0.563 (1.00) |
1 (1.00) |
0.0371 (1.00) |
0.0107 (1.00) |
4.14e-05 (0.0287) |
3.57e-05 (0.0249) |
0.000325 (0.212) |
5.31e-06 (0.00386) |
||
5q loss | 0 (0%) | 457 |
0.0515 (1.00) |
0.00755 (1.00) |
3.31e-17 (2.72e-14) |
2.94e-08 (2.25e-05) |
0.0481 (1.00) |
0.153 (1.00) |
0.0671 (1.00) |
0.128 (1.00) |
3.71e-05 (0.0258) |
5.42e-07 (0.000407) |
0.000896 (0.559) |
0.000106 (0.0713) |
9q loss | 0 (0%) | 411 |
0.000567 (0.359) |
4.17e-05 (0.029) |
1.8e-37 (1.51e-34) |
1.74e-06 (0.00128) |
0.0137 (1.00) |
0.36 (1.00) |
0.00128 (0.773) |
0.111 (1.00) |
4.13e-13 (3.32e-10) |
5.36e-07 (0.000404) |
0.0303 (1.00) |
0.0109 (1.00) |
12p loss | 0 (0%) | 478 |
3.45e-11 (2.74e-08) |
7e-05 (0.0477) |
0.0577 (1.00) |
1 (1.00) |
0.0151 (1.00) |
0.00763 (1.00) |
1.53e-08 (1.18e-05) |
0.000105 (0.0707) |
0.00236 (1.00) |
0.000204 (0.135) |
||
12q loss | 0 (0%) | 485 |
1.54e-08 (1.18e-05) |
4.3e-05 (0.0298) |
0.31 (1.00) |
0.429 (1.00) |
0.00162 (0.967) |
5.88e-05 (0.0401) |
3.5e-05 (0.0245) |
1.87e-05 (0.0133) |
0.00264 (1.00) |
0.000668 (0.421) |
||
5p gain | 0 (0%) | 470 |
0.536 (1.00) |
0.272 (1.00) |
2.39e-10 (1.88e-07) |
0.000169 (0.113) |
0.0587 (1.00) |
1 (1.00) |
0.00464 (1.00) |
0.0141 (1.00) |
0.000251 (0.164) |
1.74e-05 (0.0124) |
0.00265 (1.00) |
0.00116 (0.707) |
9p loss | 0 (0%) | 427 |
0.0129 (1.00) |
0.00193 (1.00) |
4.13e-30 (3.45e-27) |
3.22e-06 (0.00236) |
0.0117 (1.00) |
0.244 (1.00) |
0.0443 (1.00) |
0.646 (1.00) |
1.14e-08 (8.78e-06) |
9.26e-07 (0.000691) |
0.0855 (1.00) |
0.00481 (1.00) |
11p loss | 0 (0%) | 449 |
1.71e-22 (1.42e-19) |
1.49e-05 (0.0107) |
0.182 (1.00) |
0.75 (1.00) |
0.00973 (1.00) |
0.0685 (1.00) |
1.32e-07 (1e-04) |
0.000139 (0.0929) |
0.0123 (1.00) |
0.000578 (0.365) |
||
13q loss | 0 (0%) | 443 |
0.689 (1.00) |
0.272 (1.00) |
3.89e-17 (3.19e-14) |
7.77e-05 (0.0527) |
0.161 (1.00) |
0.393 (1.00) |
0.193 (1.00) |
0.21 (1.00) |
2.75e-05 (0.0194) |
0.0002 (0.133) |
0.446 (1.00) |
0.243 (1.00) |
17q loss | 0 (0%) | 430 |
0.00809 (1.00) |
0.00105 (0.645) |
8.27e-32 (6.93e-29) |
3.66e-05 (0.0255) |
0.0924 (1.00) |
0.612 (1.00) |
0.00419 (1.00) |
0.00893 (1.00) |
1.74e-08 (1.34e-05) |
3.33e-05 (0.0234) |
0.00308 (1.00) |
0.000952 (0.591) |
18q loss | 0 (0%) | 454 |
2.7e-16 (2.2e-13) |
4.81e-05 (0.033) |
0.883 (1.00) |
0.77 (1.00) |
0.0273 (1.00) |
0.293 (1.00) |
5.35e-05 (0.0367) |
4.68e-06 (0.00341) |
0.0178 (1.00) |
0.00417 (1.00) |
||
21q loss | 0 (0%) | 470 |
0.0391 (1.00) |
0.00466 (1.00) |
3.09e-08 (2.36e-05) |
0.0012 (0.728) |
0.095 (1.00) |
0.75 (1.00) |
0.176 (1.00) |
0.126 (1.00) |
0.000397 (0.256) |
4.33e-05 (0.0299) |
0.000334 (0.216) |
0.000211 (0.139) |
22q loss | 0 (0%) | 414 |
0.00809 (1.00) |
0.00105 (0.645) |
1.02e-37 (8.58e-35) |
2.01e-07 (0.000152) |
0.0721 (1.00) |
1 (1.00) |
0.0142 (1.00) |
0.0491 (1.00) |
5.3e-11 (4.2e-08) |
1.82e-07 (0.000138) |
0.0445 (1.00) |
0.00402 (1.00) |
3q gain | 0 (0%) | 452 |
0.137 (1.00) |
0.272 (1.00) |
3.89e-21 (3.23e-18) |
4.57e-05 (0.0315) |
0.388 (1.00) |
0.301 (1.00) |
0.131 (1.00) |
0.215 (1.00) |
0.00115 (0.703) |
2.4e-05 (0.017) |
0.0178 (1.00) |
0.0368 (1.00) |
18q gain | 0 (0%) | 483 |
0.137 (1.00) |
0.0194 (1.00) |
1.29e-05 (0.00923) |
0.027 (1.00) |
1 (1.00) |
0.0243 (1.00) |
0.169 (1.00) |
0.00014 (0.0936) |
4.56e-05 (0.0314) |
0.0105 (1.00) |
0.00309 (1.00) |
|
19q gain | 0 (0%) | 471 |
0.689 (1.00) |
0.272 (1.00) |
3.46e-13 (2.78e-10) |
0.00859 (1.00) |
0.0477 (1.00) |
0.367 (1.00) |
0.13 (1.00) |
0.107 (1.00) |
0.000106 (0.0715) |
7.74e-05 (0.0526) |
0.11 (1.00) |
0.026 (1.00) |
3p loss | 0 (0%) | 471 |
1.22e-13 (9.83e-11) |
3.09e-05 (0.0218) |
0.00246 (1.00) |
0.0429 (1.00) |
0.0143 (1.00) |
0.0312 (1.00) |
0.000537 (0.341) |
3.22e-05 (0.0226) |
0.0436 (1.00) |
0.00465 (1.00) |
||
7q loss | 0 (0%) | 476 |
4.6e-12 (3.69e-09) |
6.12e-05 (0.0418) |
0.197 (1.00) |
0.0121 (1.00) |
0.154 (1.00) |
0.267 (1.00) |
4.21e-06 (0.00308) |
0.000407 (0.262) |
0.0218 (1.00) |
0.0013 (0.783) |
||
10p loss | 0 (0%) | 481 |
0.137 (1.00) |
0.0194 (1.00) |
1.5e-09 (1.17e-06) |
0.000305 (0.199) |
0.474 (1.00) |
0.633 (1.00) |
0.291 (1.00) |
0.146 (1.00) |
3.48e-06 (0.00255) |
0.00404 (1.00) |
0.118 (1.00) |
0.0129 (1.00) |
19p gain | 0 (0%) | 469 |
0.151 (1.00) |
0.0272 (1.00) |
3.63e-14 (2.95e-11) |
0.0113 (1.00) |
0.255 (1.00) |
0.029 (1.00) |
0.0732 (1.00) |
0.0591 (1.00) |
0.000204 (0.135) |
0.00109 (0.665) |
0.212 (1.00) |
0.0647 (1.00) |
8q loss | 0 (0%) | 491 |
1.27e-05 (0.0091) |
0.00032 (0.208) |
1 (1.00) |
0.175 (1.00) |
0.116 (1.00) |
0.0112 (1.00) |
0.00101 (0.627) |
0.000587 (0.371) |
0.00447 (1.00) |
|||
10q loss | 0 (0%) | 480 |
9.65e-09 (7.46e-06) |
0.00172 (1.00) |
0.451 (1.00) |
1 (1.00) |
0.13 (1.00) |
0.107 (1.00) |
0.00012 (0.0808) |
0.00808 (1.00) |
0.155 (1.00) |
0.0746 (1.00) |
||
11q loss | 0 (0%) | 457 |
1e-16 (8.2e-14) |
0.000716 (0.45) |
0.925 (1.00) |
0.713 (1.00) |
0.0374 (1.00) |
0.2 (1.00) |
1.39e-06 (0.00103) |
0.000501 (0.32) |
0.0622 (1.00) |
0.000481 (0.308) |
||
1q gain | 0 (0%) | 362 |
0.25 (1.00) |
0.29 (1.00) |
0.000182 (0.121) |
0.00603 (1.00) |
0.00123 (0.743) |
0.000715 (0.45) |
0.901 (1.00) |
0.966 (1.00) |
0.00245 (1.00) |
0.355 (1.00) |
0.156 (1.00) |
0.721 (1.00) |
2p gain | 0 (0%) | 451 |
0.425 (1.00) |
0.481 (1.00) |
2.18e-19 (1.79e-16) |
0.0596 (1.00) |
0.177 (1.00) |
0.802 (1.00) |
0.0371 (1.00) |
0.409 (1.00) |
0.466 (1.00) |
0.0754 (1.00) |
0.113 (1.00) |
0.1 (1.00) |
2q gain | 0 (0%) | 462 |
0.343 (1.00) |
1 (1.00) |
1.33e-20 (1.1e-17) |
0.165 (1.00) |
0.0653 (1.00) |
0.575 (1.00) |
0.00964 (1.00) |
0.403 (1.00) |
0.477 (1.00) |
0.0227 (1.00) |
0.0727 (1.00) |
0.0621 (1.00) |
3p gain | 0 (0%) | 474 |
1.95e-20 (1.61e-17) |
0.136 (1.00) |
0.525 (1.00) |
0.652 (1.00) |
0.274 (1.00) |
0.254 (1.00) |
0.187 (1.00) |
0.0319 (1.00) |
0.32 (1.00) |
0.268 (1.00) |
||
6p gain | 0 (0%) | 466 |
0.253 (1.00) |
0.0902 (1.00) |
2.24e-20 (1.84e-17) |
0.0513 (1.00) |
0.661 (1.00) |
1 (1.00) |
0.0673 (1.00) |
0.409 (1.00) |
0.0136 (1.00) |
0.0144 (1.00) |
0.0998 (1.00) |
0.248 (1.00) |
6q gain | 0 (0%) | 472 |
0.253 (1.00) |
0.0902 (1.00) |
3.4e-17 (2.79e-14) |
0.385 (1.00) |
0.401 (1.00) |
1 (1.00) |
0.342 (1.00) |
0.309 (1.00) |
0.0527 (1.00) |
0.0363 (1.00) |
0.56 (1.00) |
0.644 (1.00) |
7p gain | 0 (0%) | 458 |
0.935 (1.00) |
0.866 (1.00) |
3.27e-14 (2.65e-11) |
0.00669 (1.00) |
0.733 (1.00) |
0.217 (1.00) |
0.0272 (1.00) |
0.559 (1.00) |
0.685 (1.00) |
0.641 (1.00) |
0.58 (1.00) |
0.199 (1.00) |
7q gain | 0 (0%) | 458 |
0.855 (1.00) |
1 (1.00) |
2.96e-15 (2.41e-12) |
0.0106 (1.00) |
0.889 (1.00) |
0.0552 (1.00) |
0.141 (1.00) |
0.559 (1.00) |
0.55 (1.00) |
0.966 (1.00) |
0.892 (1.00) |
0.203 (1.00) |
8p gain | 0 (0%) | 414 |
0.704 (1.00) |
0.609 (1.00) |
1.6e-19 (1.32e-16) |
0.718 (1.00) |
0.133 (1.00) |
1 (1.00) |
0.522 (1.00) |
0.445 (1.00) |
0.103 (1.00) |
0.0389 (1.00) |
0.36 (1.00) |
0.276 (1.00) |
8q gain | 0 (0%) | 383 |
0.0336 (1.00) |
0.0339 (1.00) |
1.5e-20 (1.24e-17) |
0.55 (1.00) |
0.00495 (1.00) |
1 (1.00) |
0.196 (1.00) |
0.908 (1.00) |
0.00139 (0.835) |
0.000802 (0.502) |
0.165 (1.00) |
0.293 (1.00) |
10p gain | 0 (0%) | 416 |
0.00714 (1.00) |
0.0476 (1.00) |
1.13e-06 (0.00084) |
0.119 (1.00) |
0.284 (1.00) |
0.136 (1.00) |
0.553 (1.00) |
0.623 (1.00) |
0.281 (1.00) |
0.00789 (1.00) |
0.0621 (1.00) |
0.0859 (1.00) |
10q gain | 0 (0%) | 423 |
0.00212 (1.00) |
0.0262 (1.00) |
9.33e-07 (0.000695) |
0.28 (1.00) |
0.268 (1.00) |
0.189 (1.00) |
0.55 (1.00) |
0.346 (1.00) |
0.158 (1.00) |
0.00125 (0.754) |
0.0725 (1.00) |
0.141 (1.00) |
12p gain | 0 (0%) | 466 |
0.64 (1.00) |
1 (1.00) |
6.2e-06 (0.0045) |
0.00549 (1.00) |
0.937 (1.00) |
1 (1.00) |
0.107 (1.00) |
0.0726 (1.00) |
0.0519 (1.00) |
0.0168 (1.00) |
0.109 (1.00) |
0.0404 (1.00) |
12q gain | 0 (0%) | 475 |
0.64 (1.00) |
1 (1.00) |
0.000208 (0.137) |
0.0869 (1.00) |
0.901 (1.00) |
1 (1.00) |
0.271 (1.00) |
0.27 (1.00) |
0.362 (1.00) |
0.177 (1.00) |
0.422 (1.00) |
0.334 (1.00) |
13q gain | 0 (0%) | 483 |
1.59e-06 (0.00118) |
0.00317 (1.00) |
0.735 (1.00) |
0.367 (1.00) |
0.381 (1.00) |
0.383 (1.00) |
0.00232 (1.00) |
0.000563 (0.358) |
0.18 (1.00) |
0.0462 (1.00) |
||
14q gain | 0 (0%) | 482 |
1 (1.00) |
0.769 (1.00) |
0.000135 (0.0904) |
0.355 (1.00) |
0.239 (1.00) |
0.292 (1.00) |
0.00964 (1.00) |
0.0454 (1.00) |
0.00496 (1.00) |
0.0311 (1.00) |
0.0937 (1.00) |
0.528 (1.00) |
15q gain | 0 (0%) | 498 |
8.54e-06 (0.00616) |
0.847 (1.00) |
1 (1.00) |
0.263 (1.00) |
1 (1.00) |
0.32 (1.00) |
0.292 (1.00) |
|||||
17q gain | 0 (0%) | 491 |
0.000298 (0.195) |
0.0137 (1.00) |
0.0531 (1.00) |
1 (1.00) |
0.116 (1.00) |
0.11 (1.00) |
0.00571 (1.00) |
0.054 (1.00) |
0.178 (1.00) |
0.125 (1.00) |
||
21q gain | 0 (0%) | 479 |
1.4e-07 (0.000106) |
0.216 (1.00) |
0.237 (1.00) |
0.558 (1.00) |
0.0576 (1.00) |
0.0454 (1.00) |
0.00575 (1.00) |
0.0226 (1.00) |
0.435 (1.00) |
0.136 (1.00) |
||
22q gain | 0 (0%) | 495 |
0.000202 (0.134) |
0.000515 (0.328) |
0.376 (1.00) |
0.271 (1.00) |
0.27 (1.00) |
0.0512 (1.00) |
0.007 (1.00) |
0.0379 (1.00) |
0.0484 (1.00) |
|||
Xq gain | 0 (0%) | 491 |
0.00033 (0.214) |
0.198 (1.00) |
0.376 (1.00) |
0.0243 (1.00) |
0.0109 (1.00) |
0.0363 (1.00) |
0.147 (1.00) |
0.043 (1.00) |
0.0316 (1.00) |
|||
1p loss | 0 (0%) | 492 |
4.08e-11 (3.23e-08) |
0.00293 (1.00) |
1 (1.00) |
0.478 (1.00) |
0.497 (1.00) |
0.647 (1.00) |
0.00173 (1.00) |
0.262 (1.00) |
0.192 (1.00) |
|||
3q loss | 0 (0%) | 490 |
3.78e-05 (0.0263) |
0.0131 (1.00) |
0.024 (1.00) |
0.558 (1.00) |
0.116 (1.00) |
0.777 (1.00) |
0.263 (1.00) |
0.255 (1.00) |
0.519 (1.00) |
0.261 (1.00) |
||
5p loss | 0 (0%) | 476 |
0.379 (1.00) |
0.0902 (1.00) |
2.52e-09 (1.96e-06) |
0.000995 (0.617) |
0.146 (1.00) |
0.301 (1.00) |
0.25 (1.00) |
0.798 (1.00) |
0.00898 (1.00) |
0.00144 (0.865) |
0.086 (1.00) |
0.0637 (1.00) |
6p loss | 0 (0%) | 494 |
4.18e-05 (0.029) |
0.0462 (1.00) |
1 (1.00) |
0.18 (1.00) |
0.0121 (1.00) |
0.156 (1.00) |
0.00586 (1.00) |
0.474 (1.00) |
0.301 (1.00) |
|||
6q loss | 0 (0%) | 492 |
0.689 (1.00) |
0.272 (1.00) |
3.1e-05 (0.0218) |
0.0356 (1.00) |
0.858 (1.00) |
0.558 (1.00) |
0.3 (1.00) |
0.0366 (1.00) |
0.0874 (1.00) |
0.00389 (1.00) |
0.282 (1.00) |
0.12 (1.00) |
7p loss | 0 (0%) | 474 |
0.137 (1.00) |
0.0194 (1.00) |
2.89e-09 (2.25e-06) |
0.00318 (1.00) |
0.158 (1.00) |
0.201 (1.00) |
0.43 (1.00) |
0.169 (1.00) |
0.000511 (0.326) |
0.0282 (1.00) |
0.141 (1.00) |
0.0608 (1.00) |
18p loss | 0 (0%) | 468 |
1.73e-11 (1.38e-08) |
0.000416 (0.267) |
0.326 (1.00) |
0.746 (1.00) |
0.369 (1.00) |
0.608 (1.00) |
0.0039 (1.00) |
0.000909 (0.566) |
0.0346 (1.00) |
0.0062 (1.00) |
||
20p loss | 0 (0%) | 488 |
9.51e-06 (0.00684) |
0.083 (1.00) |
0.243 (1.00) |
0.633 (1.00) |
0.207 (1.00) |
1 (1.00) |
0.00313 (1.00) |
0.0234 (1.00) |
0.187 (1.00) |
0.187 (1.00) |
||
Xq loss | 0 (0%) | 488 |
4.76e-06 (0.00347) |
0.00173 (1.00) |
0.617 (1.00) |
0.633 (1.00) |
0.8 (1.00) |
0.116 (1.00) |
0.0629 (1.00) |
0.00139 (0.834) |
0.0144 (1.00) |
0.00611 (1.00) |
||
1p gain | 0 (0%) | 482 |
0.467 (1.00) |
0.491 (1.00) |
0.000788 (0.494) |
1 (1.00) |
0.401 (1.00) |
1 (1.00) |
0.13 (1.00) |
0.504 (1.00) |
0.0114 (1.00) |
0.0726 (1.00) |
0.0483 (1.00) |
0.203 (1.00) |
4p gain | 0 (0%) | 497 |
0.00647 (1.00) |
0.462 (1.00) |
0.14 (1.00) |
0.116 (1.00) |
0.777 (1.00) |
0.132 (1.00) |
0.0194 (1.00) |
0.207 (1.00) |
0.0581 (1.00) |
|||
4q gain | 0 (0%) | 501 |
0.231 (1.00) |
0.376 (1.00) |
0.57 (1.00) |
0.0818 (1.00) |
||||||||
5q gain | 0 (0%) | 495 |
0.0116 (1.00) |
0.423 (1.00) |
1 (1.00) |
0.357 (1.00) |
0.0885 (1.00) |
0.171 (1.00) |
0.045 (1.00) |
|||||
9p gain | 0 (0%) | 489 |
0.0626 (1.00) |
0.117 (1.00) |
1 (1.00) |
0.175 (1.00) |
0.116 (1.00) |
0.0225 (1.00) |
0.0234 (1.00) |
0.121 (1.00) |
0.397 (1.00) |
|||
9q gain | 0 (0%) | 499 |
0.319 (1.00) |
0.374 (1.00) |
0.108 (1.00) |
0.0534 (1.00) |
0.207 (1.00) |
1 (1.00) |
||||||
11p gain | 0 (0%) | 496 |
0.137 (1.00) |
0.272 (1.00) |
0.0763 (1.00) |
0.207 (1.00) |
0.109 (1.00) |
1 (1.00) |
0.623 (1.00) |
0.777 (1.00) |
0.0608 (1.00) |
0.301 (1.00) |
0.612 (1.00) |
0.903 (1.00) |
11q gain | 0 (0%) | 496 |
0.0668 (1.00) |
0.462 (1.00) |
0.109 (1.00) |
0.299 (1.00) |
0.368 (1.00) |
0.548 (1.00) |
1 (1.00) |
0.903 (1.00) |
||||
16p gain | 0 (0%) | 493 |
0.000947 (0.589) |
0.0218 (1.00) |
0.243 (1.00) |
1 (1.00) |
0.782 (1.00) |
0.777 (1.00) |
0.0634 (1.00) |
0.122 (1.00) |
0.459 (1.00) |
0.236 (1.00) |
||
16q gain | 0 (0%) | 501 |
0.00213 (1.00) |
1 (1.00) |
1 (1.00) |
0.578 (1.00) |
0.155 (1.00) |
|||||||
17p gain | 0 (0%) | 496 |
0.0259 (1.00) |
0.168 (1.00) |
1 (1.00) |
0.782 (1.00) |
0.777 (1.00) |
0.0551 (1.00) |
0.148 (1.00) |
0.547 (1.00) |
0.494 (1.00) |
|||
1q loss | 0 (0%) | 501 |
0.231 (1.00) |
0.0634 (1.00) |
0.135 (1.00) |
0.367 (1.00) |
0.607 (1.00) |
0.0881 (1.00) |
||||||
2p loss | 0 (0%) | 499 |
0.071 (1.00) |
0.462 (1.00) |
0.376 (1.00) |
0.674 (1.00) |
0.211 (1.00) |
1 (1.00) |
0.137 (1.00) |
|||||
2q loss | 0 (0%) | 494 |
0.001 (0.619) |
0.0859 (1.00) |
0.14 (1.00) |
0.3 (1.00) |
0.0366 (1.00) |
0.124 (1.00) |
0.0524 (1.00) |
0.459 (1.00) |
0.0227 (1.00) |
|||
20q loss | 0 (0%) | 497 |
0.00813 (1.00) |
0.0146 (1.00) |
0.528 (1.00) |
0.035 (1.00) |
0.0194 (1.00) |
0.117 (1.00) |
0.0238 (1.00) |
P value = 0.000182 (Chi-square test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
1Q GAIN CNV | 87 | 4 | 27 | 8 | 9 | 7 |
1Q GAIN WILD-TYPE | 207 | 5 | 127 | 5 | 13 | 5 |
P value = 2.18e-19 (Chi-square test), Q value = 1.8e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
2P GAIN CNV | 8 | 5 | 24 | 9 | 3 | 4 |
2P GAIN WILD-TYPE | 286 | 4 | 130 | 4 | 19 | 8 |
P value = 1.33e-20 (Chi-square test), Q value = 1.1e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
2Q GAIN CNV | 5 | 4 | 18 | 9 | 3 | 3 |
2Q GAIN WILD-TYPE | 289 | 5 | 136 | 4 | 19 | 9 |
P value = 1.95e-20 (Chi-square test), Q value = 1.6e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
3P GAIN CNV | 2 | 0 | 16 | 2 | 2 | 8 |
3P GAIN WILD-TYPE | 292 | 9 | 138 | 11 | 20 | 4 |
P value = 3.89e-21 (Chi-square test), Q value = 3.2e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
3Q GAIN CNV | 3 | 1 | 34 | 2 | 3 | 9 |
3Q GAIN WILD-TYPE | 291 | 8 | 120 | 11 | 19 | 3 |
P value = 4.57e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
3Q GAIN CNV | 30 | 7 | 7 |
3Q GAIN WILD-TYPE | 116 | 82 | 148 |
P value = 2.4e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
3Q GAIN CNV | 6 | 9 | 37 |
3Q GAIN WILD-TYPE | 21 | 213 | 209 |
P value = 2.39e-10 (Chi-square test), Q value = 1.9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
5P GAIN CNV | 3 | 0 | 29 | 0 | 2 | 0 |
5P GAIN WILD-TYPE | 291 | 9 | 125 | 13 | 20 | 12 |
P value = 0.000169 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
5P GAIN CNV | 20 | 4 | 3 |
5P GAIN WILD-TYPE | 126 | 85 | 152 |
P value = 0.000251 (Chi-square test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
5P GAIN CNV | 21 | 1 | 3 | 3 | 5 |
5P GAIN WILD-TYPE | 128 | 128 | 46 | 50 | 110 |
P value = 1.74e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
5P GAIN CNV | 2 | 3 | 28 |
5P GAIN WILD-TYPE | 25 | 219 | 218 |
P value = 2.24e-20 (Chi-square test), Q value = 1.8e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
6P GAIN CNV | 1 | 1 | 26 | 1 | 1 | 8 |
6P GAIN WILD-TYPE | 293 | 8 | 128 | 12 | 21 | 4 |
P value = 3.4e-17 (Chi-square test), Q value = 2.8e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
6Q GAIN CNV | 1 | 1 | 21 | 1 | 1 | 7 |
6Q GAIN WILD-TYPE | 293 | 8 | 133 | 12 | 21 | 5 |
P value = 3.27e-14 (Chi-square test), Q value = 2.7e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
7P GAIN CNV | 8 | 4 | 17 | 6 | 7 | 4 |
7P GAIN WILD-TYPE | 286 | 5 | 137 | 7 | 15 | 8 |
P value = 2.96e-15 (Chi-square test), Q value = 2.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
7Q GAIN CNV | 11 | 5 | 13 | 6 | 7 | 4 |
7Q GAIN WILD-TYPE | 283 | 4 | 141 | 7 | 15 | 8 |
P value = 1.6e-19 (Chi-square test), Q value = 1.3e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
8P GAIN CNV | 31 | 2 | 28 | 3 | 14 | 12 |
8P GAIN WILD-TYPE | 263 | 7 | 126 | 10 | 8 | 0 |
P value = 1.5e-20 (Chi-square test), Q value = 1.2e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
8Q GAIN CNV | 32 | 3 | 56 | 3 | 15 | 12 |
8Q GAIN WILD-TYPE | 262 | 6 | 98 | 10 | 7 | 0 |
P value = 1.13e-06 (Chi-square test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
10P GAIN CNV | 44 | 1 | 23 | 9 | 5 | 6 |
10P GAIN WILD-TYPE | 250 | 8 | 131 | 4 | 17 | 6 |
P value = 9.33e-07 (Chi-square test), Q value = 7e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
10Q GAIN CNV | 43 | 2 | 18 | 9 | 4 | 5 |
10Q GAIN WILD-TYPE | 251 | 7 | 136 | 4 | 18 | 7 |
P value = 6.2e-06 (Chi-square test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
12P GAIN CNV | 8 | 3 | 19 | 2 | 5 | 1 |
12P GAIN WILD-TYPE | 286 | 6 | 135 | 11 | 17 | 11 |
P value = 0.000208 (Chi-square test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
12Q GAIN CNV | 8 | 2 | 11 | 2 | 5 | 1 |
12Q GAIN WILD-TYPE | 286 | 7 | 143 | 11 | 17 | 11 |
P value = 1.59e-06 (Chi-square test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
13Q GAIN CNV | 1 | 0 | 18 | 1 | 0 | 1 |
13Q GAIN WILD-TYPE | 293 | 9 | 136 | 12 | 22 | 11 |
P value = 0.000135 (Chi-square test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
14Q GAIN CNV | 3 | 0 | 15 | 0 | 2 | 2 |
14Q GAIN WILD-TYPE | 291 | 9 | 139 | 13 | 20 | 10 |
P value = 8.54e-06 (Chi-square test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
15Q GAIN CNV | 1 | 0 | 2 | 0 | 3 | 0 |
15Q GAIN WILD-TYPE | 293 | 9 | 152 | 13 | 19 | 12 |
P value = 0.000298 (Chi-square test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
17Q GAIN CNV | 1 | 0 | 9 | 2 | 0 | 1 |
17Q GAIN WILD-TYPE | 293 | 9 | 145 | 11 | 22 | 11 |
P value = 1.75e-13 (Chi-square test), Q value = 1.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
18P GAIN CNV | 2 | 1 | 35 | 0 | 1 | 1 |
18P GAIN WILD-TYPE | 292 | 8 | 119 | 13 | 21 | 11 |
P value = 0.000133 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
18P GAIN CNV | 21 | 9 | 3 |
18P GAIN WILD-TYPE | 125 | 80 | 152 |
P value = 0.000328 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 36 | 33 |
18P GAIN CNV | 14 | 1 | 1 |
18P GAIN WILD-TYPE | 35 | 35 | 32 |
P value = 1.97e-06 (Chi-square test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
18P GAIN CNV | 26 | 1 | 5 | 5 | 3 |
18P GAIN WILD-TYPE | 123 | 128 | 44 | 48 | 112 |
P value = 2.07e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
18P GAIN CNV | 0 | 2 | 38 |
18P GAIN WILD-TYPE | 27 | 220 | 208 |
P value = 8.35e-05 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
18P GAIN CNV | 12 | 2 | 18 | 2 |
18P GAIN WILD-TYPE | 87 | 136 | 92 | 23 |
P value = 1.29e-05 (Chi-square test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
18Q GAIN CNV | 2 | 1 | 17 | 0 | 0 | 1 |
18Q GAIN WILD-TYPE | 292 | 8 | 137 | 13 | 22 | 11 |
P value = 0.00014 (Chi-square test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
18Q GAIN CNV | 14 | 0 | 1 | 5 | 1 |
18Q GAIN WILD-TYPE | 135 | 129 | 48 | 48 | 114 |
P value = 4.56e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
18Q GAIN CNV | 0 | 1 | 20 |
18Q GAIN WILD-TYPE | 27 | 221 | 226 |
P value = 3.63e-14 (Chi-square test), Q value = 2.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
19P GAIN CNV | 0 | 1 | 32 | 0 | 0 | 2 |
19P GAIN WILD-TYPE | 294 | 8 | 122 | 13 | 22 | 10 |
P value = 0.000204 (Chi-square test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
19P GAIN CNV | 21 | 3 | 6 | 2 | 3 |
19P GAIN WILD-TYPE | 128 | 126 | 43 | 51 | 112 |
P value = 3.46e-13 (Chi-square test), Q value = 2.8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
19Q GAIN CNV | 0 | 1 | 30 | 0 | 0 | 2 |
19Q GAIN WILD-TYPE | 294 | 8 | 124 | 13 | 22 | 10 |
P value = 0.000106 (Chi-square test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
19Q GAIN CNV | 21 | 2 | 5 | 2 | 3 |
19Q GAIN WILD-TYPE | 128 | 127 | 44 | 51 | 112 |
P value = 7.74e-05 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
19Q GAIN CNV | 1 | 4 | 28 |
19Q GAIN WILD-TYPE | 26 | 218 | 218 |
P value = 9.25e-25 (Chi-square test), Q value = 7.7e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
20P GAIN CNV | 3 | 2 | 47 | 0 | 13 | 1 |
20P GAIN WILD-TYPE | 291 | 7 | 107 | 13 | 9 | 11 |
P value = 4.83e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
20P GAIN CNV | 37 | 9 | 12 |
20P GAIN WILD-TYPE | 109 | 80 | 143 |
P value = 9.79e-06 (Chi-square test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
20P GAIN CNV | 37 | 8 | 8 | 6 | 7 |
20P GAIN WILD-TYPE | 112 | 121 | 41 | 47 | 108 |
P value = 4e-07 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
20P GAIN CNV | 1 | 12 | 53 |
20P GAIN WILD-TYPE | 26 | 210 | 193 |
P value = 0.000207 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
20P GAIN CNV | 39 | 7 | 10 |
20P GAIN WILD-TYPE | 130 | 108 | 78 |
P value = 4.72e-05 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
20P GAIN CNV | 13 | 9 | 31 | 3 |
20P GAIN WILD-TYPE | 86 | 129 | 79 | 22 |
P value = 1.37e-29 (Chi-square test), Q value = 1.1e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
20Q GAIN CNV | 3 | 2 | 57 | 0 | 14 | 1 |
20Q GAIN WILD-TYPE | 291 | 7 | 97 | 13 | 8 | 11 |
P value = 6.66e-07 (Fisher's exact test), Q value = 5e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
20Q GAIN CNV | 45 | 10 | 13 |
20Q GAIN WILD-TYPE | 101 | 79 | 142 |
P value = 0.000315 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 36 | 33 |
20Q GAIN CNV | 23 | 4 | 5 |
20Q GAIN WILD-TYPE | 26 | 32 | 28 |
P value = 0.000351 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
20Q GAIN CNV | 22 | 6 | 4 |
20Q GAIN WILD-TYPE | 24 | 30 | 32 |
P value = 2.89e-08 (Chi-square test), Q value = 2.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
20Q GAIN CNV | 45 | 9 | 9 | 6 | 7 |
20Q GAIN WILD-TYPE | 104 | 120 | 40 | 47 | 108 |
P value = 4.3e-09 (Fisher's exact test), Q value = 3.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
20Q GAIN CNV | 1 | 13 | 62 |
20Q GAIN WILD-TYPE | 26 | 209 | 184 |
P value = 2.4e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
20Q GAIN CNV | 46 | 8 | 12 |
20Q GAIN WILD-TYPE | 123 | 107 | 76 |
P value = 5.96e-07 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
20Q GAIN CNV | 15 | 10 | 38 | 3 |
20Q GAIN WILD-TYPE | 84 | 128 | 72 | 22 |
P value = 1.4e-07 (Chi-square test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
21Q GAIN CNV | 1 | 0 | 21 | 0 | 2 | 1 |
21Q GAIN WILD-TYPE | 293 | 9 | 133 | 13 | 20 | 11 |
P value = 0.000202 (Chi-square test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
22Q GAIN CNV | 1 | 1 | 5 | 2 | 0 | 0 |
22Q GAIN WILD-TYPE | 293 | 8 | 149 | 11 | 22 | 12 |
P value = 0.00033 (Chi-square test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
XQ GAIN CNV | 0 | 0 | 11 | 0 | 1 | 1 |
XQ GAIN WILD-TYPE | 294 | 9 | 143 | 13 | 21 | 11 |
P value = 4.08e-11 (Chi-square test), Q value = 3.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
1P LOSS CNV | 0 | 1 | 6 | 4 | 1 | 0 |
1P LOSS WILD-TYPE | 294 | 8 | 148 | 9 | 21 | 12 |
P value = 1.22e-13 (Chi-square test), Q value = 9.8e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
3P LOSS CNV | 0 | 0 | 31 | 0 | 2 | 0 |
3P LOSS WILD-TYPE | 294 | 9 | 123 | 13 | 20 | 12 |
P value = 3.09e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
3P LOSS CNV | 21 | 6 | 2 |
3P LOSS WILD-TYPE | 125 | 83 | 153 |
P value = 3.22e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
3P LOSS CNV | 1 | 3 | 27 |
3P LOSS WILD-TYPE | 26 | 219 | 219 |
P value = 3.78e-05 (Chi-square test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
3Q LOSS CNV | 0 | 0 | 13 | 0 | 1 | 0 |
3Q LOSS WILD-TYPE | 294 | 9 | 141 | 13 | 21 | 12 |
P value = 1.19e-24 (Chi-square test), Q value = 9.9e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
4P LOSS CNV | 2 | 2 | 57 | 4 | 2 | 0 |
4P LOSS WILD-TYPE | 292 | 7 | 97 | 9 | 20 | 12 |
P value = 3.12e-10 (Fisher's exact test), Q value = 2.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
4P LOSS CNV | 41 | 16 | 4 |
4P LOSS WILD-TYPE | 105 | 73 | 151 |
P value = 6.92e-12 (Chi-square test), Q value = 5.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
4P LOSS CNV | 45 | 5 | 4 | 7 | 4 |
4P LOSS WILD-TYPE | 104 | 124 | 45 | 46 | 111 |
P value = 1.6e-10 (Fisher's exact test), Q value = 1.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
4P LOSS CNV | 5 | 6 | 54 |
4P LOSS WILD-TYPE | 22 | 216 | 192 |
P value = 9.82e-05 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
4P LOSS CNV | 39 | 6 | 16 |
4P LOSS WILD-TYPE | 130 | 109 | 72 |
P value = 5.67e-06 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
4P LOSS CNV | 21 | 7 | 30 | 3 |
4P LOSS WILD-TYPE | 78 | 131 | 80 | 22 |
P value = 6.55e-25 (Chi-square test), Q value = 5.5e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
4Q LOSS CNV | 1 | 2 | 56 | 4 | 2 | 0 |
4Q LOSS WILD-TYPE | 293 | 7 | 98 | 9 | 20 | 12 |
P value = 3.05e-10 (Fisher's exact test), Q value = 2.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
4Q LOSS CNV | 38 | 17 | 3 |
4Q LOSS WILD-TYPE | 108 | 72 | 152 |
P value = 6.72e-07 (Chi-square test), Q value = 5e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
4Q LOSS CNV | 38 | 7 | 5 | 7 | 6 |
4Q LOSS WILD-TYPE | 111 | 122 | 44 | 46 | 109 |
P value = 4.34e-09 (Fisher's exact test), Q value = 3.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
4Q LOSS CNV | 5 | 7 | 51 |
4Q LOSS WILD-TYPE | 22 | 215 | 195 |
P value = 0.000244 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
4Q LOSS CNV | 37 | 6 | 15 |
4Q LOSS WILD-TYPE | 132 | 109 | 73 |
P value = 3.56e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
4Q LOSS CNV | 22 | 7 | 26 | 3 |
4Q LOSS WILD-TYPE | 77 | 131 | 84 | 22 |
P value = 2.52e-09 (Chi-square test), Q value = 2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
5P LOSS CNV | 0 | 2 | 21 | 1 | 4 | 0 |
5P LOSS WILD-TYPE | 294 | 7 | 133 | 12 | 18 | 12 |
P value = 3.31e-17 (Chi-square test), Q value = 2.7e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
5Q LOSS CNV | 0 | 1 | 40 | 1 | 5 | 0 |
5Q LOSS WILD-TYPE | 294 | 8 | 114 | 12 | 17 | 12 |
P value = 2.94e-08 (Fisher's exact test), Q value = 2.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
5Q LOSS CNV | 30 | 7 | 2 |
5Q LOSS WILD-TYPE | 116 | 82 | 153 |
P value = 3.71e-05 (Chi-square test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
5Q LOSS CNV | 28 | 3 | 5 | 3 | 7 |
5Q LOSS WILD-TYPE | 121 | 126 | 44 | 50 | 108 |
P value = 5.42e-07 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
5Q LOSS CNV | 2 | 5 | 39 |
5Q LOSS WILD-TYPE | 25 | 217 | 207 |
P value = 0.000106 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
5Q LOSS CNV | 16 | 3 | 17 | 1 |
5Q LOSS WILD-TYPE | 83 | 135 | 93 | 24 |
P value = 4.18e-05 (Chi-square test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
6P LOSS CNV | 0 | 1 | 7 | 2 | 0 | 0 |
6P LOSS WILD-TYPE | 294 | 8 | 147 | 11 | 22 | 12 |
P value = 3.1e-05 (Chi-square test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
6Q LOSS CNV | 0 | 1 | 9 | 2 | 0 | 0 |
6Q LOSS WILD-TYPE | 294 | 8 | 145 | 11 | 22 | 12 |
P value = 2.89e-09 (Chi-square test), Q value = 2.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
7P LOSS CNV | 3 | 0 | 26 | 1 | 0 | 0 |
7P LOSS WILD-TYPE | 291 | 9 | 128 | 12 | 22 | 12 |
P value = 4.6e-12 (Chi-square test), Q value = 3.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
7Q LOSS CNV | 0 | 0 | 27 | 1 | 0 | 0 |
7Q LOSS WILD-TYPE | 294 | 9 | 127 | 12 | 22 | 12 |
P value = 6.12e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
7Q LOSS CNV | 17 | 7 | 1 |
7Q LOSS WILD-TYPE | 129 | 82 | 154 |
P value = 4.21e-06 (Chi-square test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
7Q LOSS CNV | 21 | 2 | 3 | 1 | 1 |
7Q LOSS WILD-TYPE | 128 | 127 | 46 | 52 | 114 |
P value = 4.17e-24 (Chi-square test), Q value = 3.5e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
8P LOSS CNV | 2 | 2 | 52 | 0 | 0 | 0 |
8P LOSS WILD-TYPE | 292 | 7 | 102 | 13 | 22 | 12 |
P value = 6.02e-11 (Fisher's exact test), Q value = 4.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
8P LOSS CNV | 38 | 9 | 2 |
8P LOSS WILD-TYPE | 108 | 80 | 153 |
P value = 1.5e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
8P LOSS CNV | 16 | 3 | 0 |
8P LOSS WILD-TYPE | 30 | 33 | 36 |
P value = 1.36e-13 (Chi-square test), Q value = 1.1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
8P LOSS CNV | 41 | 1 | 5 | 2 | 4 |
8P LOSS WILD-TYPE | 108 | 128 | 44 | 51 | 111 |
P value = 2.72e-14 (Fisher's exact test), Q value = 2.2e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
8P LOSS CNV | 1 | 1 | 51 |
8P LOSS WILD-TYPE | 26 | 221 | 195 |
P value = 7.89e-07 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
8P LOSS CNV | 31 | 1 | 15 |
8P LOSS WILD-TYPE | 138 | 114 | 73 |
P value = 1.32e-07 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
8P LOSS CNV | 19 | 2 | 24 | 2 |
8P LOSS WILD-TYPE | 80 | 136 | 86 | 23 |
P value = 1.27e-05 (Chi-square test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
8Q LOSS CNV | 0 | 0 | 13 | 0 | 0 | 0 |
8Q LOSS WILD-TYPE | 294 | 9 | 141 | 13 | 22 | 12 |
P value = 0.00032 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
8Q LOSS CNV | 10 | 1 | 0 |
8Q LOSS WILD-TYPE | 136 | 88 | 155 |
P value = 4.13e-30 (Chi-square test), Q value = 3.5e-27
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
9P LOSS CNV | 2 | 4 | 66 | 1 | 4 | 0 |
9P LOSS WILD-TYPE | 292 | 5 | 88 | 12 | 18 | 12 |
P value = 3.22e-06 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
9P LOSS CNV | 37 | 19 | 9 |
9P LOSS WILD-TYPE | 109 | 70 | 146 |
P value = 1.14e-08 (Chi-square test), Q value = 8.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
9P LOSS CNV | 46 | 11 | 6 | 6 | 6 |
9P LOSS WILD-TYPE | 103 | 118 | 43 | 47 | 109 |
P value = 9.26e-07 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
9P LOSS CNV | 4 | 14 | 57 |
9P LOSS WILD-TYPE | 23 | 208 | 189 |
P value = 4.17e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 19 | 15 |
9Q LOSS CNV | 0 | 0 | 7 |
9Q LOSS WILD-TYPE | 19 | 19 | 8 |
P value = 1.8e-37 (Chi-square test), Q value = 1.5e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
9Q LOSS CNV | 3 | 4 | 80 | 1 | 5 | 0 |
9Q LOSS WILD-TYPE | 291 | 5 | 74 | 12 | 17 | 12 |
P value = 1.74e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
9Q LOSS CNV | 45 | 22 | 13 |
9Q LOSS WILD-TYPE | 101 | 67 | 142 |
P value = 4.13e-13 (Chi-square test), Q value = 3.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
9Q LOSS CNV | 58 | 13 | 8 | 7 | 5 |
9Q LOSS WILD-TYPE | 91 | 116 | 41 | 46 | 110 |
P value = 5.36e-07 (Fisher's exact test), Q value = 4e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
9Q LOSS CNV | 5 | 19 | 67 |
9Q LOSS WILD-TYPE | 22 | 203 | 179 |
P value = 1.5e-09 (Chi-square test), Q value = 1.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
10P LOSS CNV | 0 | 0 | 22 | 1 | 0 | 0 |
10P LOSS WILD-TYPE | 294 | 9 | 132 | 12 | 22 | 12 |
P value = 0.000305 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
10P LOSS CNV | 15 | 4 | 1 |
10P LOSS WILD-TYPE | 131 | 85 | 154 |
P value = 3.48e-06 (Chi-square test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
10P LOSS CNV | 18 | 1 | 2 | 1 | 0 |
10P LOSS WILD-TYPE | 131 | 128 | 47 | 52 | 115 |
P value = 9.65e-09 (Chi-square test), Q value = 7.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
10Q LOSS CNV | 1 | 0 | 22 | 1 | 0 | 0 |
10Q LOSS WILD-TYPE | 293 | 9 | 132 | 12 | 22 | 12 |
P value = 0.00012 (Chi-square test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
10Q LOSS CNV | 17 | 2 | 3 | 2 | 0 |
10Q LOSS WILD-TYPE | 132 | 127 | 46 | 51 | 115 |
P value = 1.71e-22 (Chi-square test), Q value = 1.4e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
11P LOSS CNV | 1 | 0 | 49 | 4 | 1 | 0 |
11P LOSS WILD-TYPE | 293 | 9 | 105 | 9 | 21 | 12 |
P value = 1.49e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
11P LOSS CNV | 30 | 14 | 6 |
11P LOSS WILD-TYPE | 116 | 75 | 149 |
P value = 1.32e-07 (Chi-square test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
11P LOSS CNV | 35 | 8 | 4 | 5 | 2 |
11P LOSS WILD-TYPE | 114 | 121 | 45 | 48 | 113 |
P value = 0.000139 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
11P LOSS CNV | 2 | 11 | 41 |
11P LOSS WILD-TYPE | 25 | 211 | 205 |
P value = 1e-16 (Chi-square test), Q value = 8.2e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
11Q LOSS CNV | 1 | 0 | 39 | 4 | 3 | 0 |
11Q LOSS WILD-TYPE | 293 | 9 | 115 | 9 | 19 | 12 |
P value = 1.39e-06 (Chi-square test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
11Q LOSS CNV | 30 | 8 | 1 | 6 | 2 |
11Q LOSS WILD-TYPE | 119 | 121 | 48 | 47 | 113 |
P value = 3.45e-11 (Chi-square test), Q value = 2.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
12P LOSS CNV | 0 | 1 | 25 | 0 | 0 | 0 |
12P LOSS WILD-TYPE | 294 | 8 | 129 | 13 | 22 | 12 |
P value = 7e-05 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
12P LOSS CNV | 17 | 5 | 1 |
12P LOSS WILD-TYPE | 129 | 84 | 154 |
P value = 1.53e-08 (Chi-square test), Q value = 1.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
12P LOSS CNV | 22 | 1 | 1 | 0 | 1 |
12P LOSS WILD-TYPE | 127 | 128 | 48 | 53 | 114 |
P value = 0.000105 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
12P LOSS CNV | 1 | 2 | 22 |
12P LOSS WILD-TYPE | 26 | 220 | 224 |
P value = 0.000204 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
12P LOSS CNV | 5 | 1 | 15 | 1 |
12P LOSS WILD-TYPE | 94 | 137 | 95 | 24 |
P value = 1.54e-08 (Chi-square test), Q value = 1.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
12Q LOSS CNV | 0 | 0 | 19 | 0 | 0 | 0 |
12Q LOSS WILD-TYPE | 294 | 9 | 135 | 13 | 22 | 12 |
P value = 4.3e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
12Q LOSS CNV | 14 | 3 | 0 |
12Q LOSS WILD-TYPE | 132 | 86 | 155 |
P value = 5.88e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
12Q LOSS CNV | 11 | 0 | 0 |
12Q LOSS WILD-TYPE | 35 | 36 | 36 |
P value = 3.5e-05 (Chi-square test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
12Q LOSS CNV | 15 | 0 | 1 | 1 | 1 |
12Q LOSS WILD-TYPE | 134 | 129 | 48 | 52 | 114 |
P value = 1.87e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
12Q LOSS CNV | 0 | 0 | 18 |
12Q LOSS WILD-TYPE | 27 | 222 | 228 |
P value = 3.89e-17 (Chi-square test), Q value = 3.2e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
13Q LOSS CNV | 4 | 3 | 45 | 4 | 5 | 0 |
13Q LOSS WILD-TYPE | 290 | 6 | 109 | 9 | 17 | 12 |
P value = 7.77e-05 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
13Q LOSS CNV | 31 | 15 | 8 |
13Q LOSS WILD-TYPE | 115 | 74 | 147 |
P value = 2.75e-05 (Chi-square test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
13Q LOSS CNV | 33 | 11 | 2 | 9 | 5 |
13Q LOSS WILD-TYPE | 116 | 118 | 47 | 44 | 110 |
P value = 2e-04 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
13Q LOSS CNV | 6 | 13 | 41 |
13Q LOSS WILD-TYPE | 21 | 209 | 205 |
P value = 7.51e-17 (Chi-square test), Q value = 6.1e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
14Q LOSS CNV | 0 | 0 | 37 | 4 | 2 | 0 |
14Q LOSS WILD-TYPE | 294 | 9 | 117 | 9 | 20 | 12 |
P value = 8.34e-09 (Fisher's exact test), Q value = 6.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
14Q LOSS CNV | 28 | 5 | 1 |
14Q LOSS WILD-TYPE | 118 | 84 | 154 |
P value = 1.24e-05 (Chi-square test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
14Q LOSS CNV | 26 | 1 | 2 | 5 | 7 |
14Q LOSS WILD-TYPE | 123 | 128 | 47 | 48 | 108 |
P value = 1.05e-11 (Fisher's exact test), Q value = 8.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
14Q LOSS CNV | 2 | 0 | 39 |
14Q LOSS WILD-TYPE | 25 | 222 | 207 |
P value = 4.6e-06 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
14Q LOSS CNV | 28 | 1 | 5 |
14Q LOSS WILD-TYPE | 141 | 114 | 83 |
P value = 1.1e-05 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
14Q LOSS CNV | 8 | 2 | 21 | 3 |
14Q LOSS WILD-TYPE | 91 | 136 | 89 | 22 |
P value = 0.000218 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 19 | 15 |
15Q LOSS CNV | 0 | 0 | 6 |
15Q LOSS WILD-TYPE | 19 | 19 | 9 |
P value = 6.8e-35 (Chi-square test), Q value = 5.7e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
15Q LOSS CNV | 1 | 1 | 74 | 4 | 4 | 0 |
15Q LOSS WILD-TYPE | 293 | 8 | 80 | 9 | 18 | 12 |
P value = 9.31e-12 (Fisher's exact test), Q value = 7.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
15Q LOSS CNV | 50 | 18 | 6 |
15Q LOSS WILD-TYPE | 96 | 71 | 149 |
P value = 2.61e-10 (Fisher's exact test), Q value = 2.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 36 | 33 |
15Q LOSS CNV | 32 | 4 | 2 |
15Q LOSS WILD-TYPE | 17 | 32 | 31 |
P value = 4.49e-07 (Fisher's exact test), Q value = 0.00034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
15Q LOSS CNV | 27 | 9 | 2 |
15Q LOSS WILD-TYPE | 19 | 27 | 34 |
P value = 1.39e-14 (Chi-square test), Q value = 1.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
15Q LOSS CNV | 55 | 7 | 9 | 7 | 4 |
15Q LOSS WILD-TYPE | 94 | 122 | 40 | 46 | 111 |
P value = 4.72e-14 (Fisher's exact test), Q value = 3.8e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
15Q LOSS CNV | 8 | 7 | 67 |
15Q LOSS WILD-TYPE | 19 | 215 | 179 |
P value = 3.26e-06 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
15Q LOSS CNV | 49 | 7 | 17 |
15Q LOSS WILD-TYPE | 120 | 108 | 71 |
P value = 9.96e-07 (Fisher's exact test), Q value = 0.00074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
15Q LOSS CNV | 21 | 10 | 38 | 4 |
15Q LOSS WILD-TYPE | 78 | 128 | 72 | 21 |
P value = 1.54e-30 (Chi-square test), Q value = 1.3e-27
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
16P LOSS CNV | 1 | 1 | 66 | 2 | 3 | 0 |
16P LOSS WILD-TYPE | 293 | 8 | 88 | 11 | 19 | 12 |
P value = 1.86e-09 (Fisher's exact test), Q value = 1.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
16P LOSS CNV | 40 | 19 | 5 |
16P LOSS WILD-TYPE | 106 | 70 | 150 |
P value = 3.47e-08 (Fisher's exact test), Q value = 2.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 36 | 33 |
16P LOSS CNV | 27 | 2 | 3 |
16P LOSS WILD-TYPE | 22 | 34 | 30 |
P value = 9.34e-07 (Fisher's exact test), Q value = 7e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
16P LOSS CNV | 25 | 4 | 3 |
16P LOSS WILD-TYPE | 21 | 32 | 33 |
P value = 4.64e-12 (Chi-square test), Q value = 3.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
16P LOSS CNV | 48 | 7 | 4 | 6 | 5 |
16P LOSS WILD-TYPE | 101 | 122 | 45 | 47 | 110 |
P value = 6.35e-11 (Fisher's exact test), Q value = 5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
16P LOSS CNV | 5 | 7 | 58 |
16P LOSS WILD-TYPE | 22 | 215 | 188 |
P value = 5.75e-05 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
16P LOSS CNV | 40 | 6 | 17 |
16P LOSS WILD-TYPE | 129 | 109 | 71 |
P value = 7.32e-06 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
16P LOSS CNV | 22 | 7 | 29 | 5 |
16P LOSS WILD-TYPE | 77 | 131 | 81 | 20 |
P value = 7.72e-37 (Chi-square test), Q value = 6.5e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
16Q LOSS CNV | 13 | 4 | 91 | 2 | 4 | 0 |
16Q LOSS WILD-TYPE | 281 | 5 | 63 | 11 | 18 | 12 |
P value = 2.55e-11 (Fisher's exact test), Q value = 2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
16Q LOSS CNV | 59 | 27 | 12 |
16Q LOSS WILD-TYPE | 87 | 62 | 143 |
P value = 8.89e-08 (Fisher's exact test), Q value = 6.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 36 | 33 |
16Q LOSS CNV | 31 | 3 | 7 |
16Q LOSS WILD-TYPE | 18 | 33 | 26 |
P value = 1.79e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
16Q LOSS CNV | 29 | 6 | 6 |
16Q LOSS WILD-TYPE | 17 | 30 | 30 |
P value = 9.45e-14 (Chi-square test), Q value = 7.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
16Q LOSS CNV | 67 | 12 | 9 | 10 | 12 |
16Q LOSS WILD-TYPE | 82 | 117 | 40 | 43 | 103 |
P value = 2.9e-10 (Fisher's exact test), Q value = 2.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
16Q LOSS CNV | 5 | 21 | 84 |
16Q LOSS WILD-TYPE | 22 | 201 | 162 |
P value = 2.02e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
16Q LOSS CNV | 59 | 13 | 24 |
16Q LOSS WILD-TYPE | 110 | 102 | 64 |
P value = 1.46e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
16Q LOSS CNV | 30 | 14 | 45 | 7 |
16Q LOSS WILD-TYPE | 69 | 124 | 65 | 18 |
P value = 4.96e-54 (Chi-square test), Q value = 4.2e-51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
17P LOSS CNV | 2 | 0 | 102 | 2 | 5 | 0 |
17P LOSS WILD-TYPE | 292 | 9 | 52 | 11 | 17 | 12 |
P value = 2.17e-12 (Fisher's exact test), Q value = 1.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
17P LOSS CNV | 63 | 20 | 12 |
17P LOSS WILD-TYPE | 83 | 69 | 143 |
P value = 7.41e-06 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 36 | 33 |
17P LOSS CNV | 26 | 2 | 12 |
17P LOSS WILD-TYPE | 23 | 34 | 21 |
P value = 0.000104 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 36 | 36 |
17P LOSS CNV | 26 | 5 | 9 |
17P LOSS WILD-TYPE | 20 | 31 | 27 |
P value = 2.24e-18 (Chi-square test), Q value = 1.8e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
17P LOSS CNV | 72 | 13 | 7 | 7 | 9 |
17P LOSS WILD-TYPE | 77 | 116 | 42 | 46 | 106 |
P value = 3.22e-10 (Fisher's exact test), Q value = 2.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
17P LOSS CNV | 6 | 20 | 82 |
17P LOSS WILD-TYPE | 21 | 202 | 164 |
P value = 9.27e-05 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
17P LOSS CNV | 59 | 15 | 19 |
17P LOSS WILD-TYPE | 110 | 100 | 69 |
P value = 2.05e-06 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
17P LOSS CNV | 23 | 17 | 46 | 7 |
17P LOSS WILD-TYPE | 76 | 121 | 64 | 18 |
P value = 8.27e-32 (Chi-square test), Q value = 6.9e-29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
17Q LOSS CNV | 1 | 0 | 67 | 1 | 5 | 0 |
17Q LOSS WILD-TYPE | 293 | 9 | 87 | 12 | 17 | 12 |
P value = 3.66e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
17Q LOSS CNV | 38 | 15 | 11 |
17Q LOSS WILD-TYPE | 108 | 74 | 144 |
P value = 1.74e-08 (Chi-square test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
17Q LOSS CNV | 44 | 10 | 4 | 7 | 6 |
17Q LOSS WILD-TYPE | 105 | 119 | 45 | 46 | 109 |
P value = 3.33e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
17Q LOSS CNV | 5 | 15 | 51 |
17Q LOSS WILD-TYPE | 22 | 207 | 195 |
P value = 1.73e-11 (Chi-square test), Q value = 1.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
18P LOSS CNV | 1 | 1 | 25 | 3 | 6 | 0 |
18P LOSS WILD-TYPE | 293 | 8 | 129 | 10 | 16 | 12 |
P value = 2.7e-16 (Chi-square test), Q value = 2.2e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
18Q LOSS CNV | 1 | 1 | 39 | 3 | 6 | 0 |
18Q LOSS WILD-TYPE | 293 | 8 | 115 | 10 | 16 | 12 |
P value = 4.81e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
18Q LOSS CNV | 29 | 9 | 6 |
18Q LOSS WILD-TYPE | 117 | 80 | 149 |
P value = 5.35e-05 (Chi-square test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
18Q LOSS CNV | 29 | 6 | 4 | 6 | 4 |
18Q LOSS WILD-TYPE | 120 | 123 | 45 | 47 | 111 |
P value = 4.68e-06 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
18Q LOSS CNV | 6 | 7 | 36 |
18Q LOSS WILD-TYPE | 21 | 215 | 210 |
P value = 5.04e-12 (Chi-square test), Q value = 4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
19P LOSS CNV | 0 | 1 | 29 | 3 | 3 | 0 |
19P LOSS WILD-TYPE | 294 | 8 | 125 | 10 | 19 | 12 |
P value = 2.01e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
19P LOSS CNV | 28 | 3 | 1 |
19P LOSS WILD-TYPE | 118 | 86 | 154 |
P value = 1.35e-06 (Chi-square test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
19P LOSS CNV | 25 | 2 | 1 | 4 | 3 |
19P LOSS WILD-TYPE | 124 | 127 | 48 | 49 | 112 |
P value = 5.52e-07 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
19P LOSS CNV | 2 | 2 | 31 |
19P LOSS WILD-TYPE | 25 | 220 | 215 |
P value = 1.42e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
19P LOSS CNV | 27 | 2 | 3 |
19P LOSS WILD-TYPE | 142 | 113 | 85 |
P value = 5.62e-08 (Fisher's exact test), Q value = 4.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
19P LOSS CNV | 3 | 2 | 23 | 4 |
19P LOSS WILD-TYPE | 96 | 136 | 87 | 21 |
P value = 1.19e-08 (Chi-square test), Q value = 9.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
19Q LOSS CNV | 1 | 1 | 22 | 3 | 2 | 0 |
19Q LOSS WILD-TYPE | 293 | 8 | 132 | 10 | 20 | 12 |
P value = 7.23e-06 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
19Q LOSS CNV | 20 | 4 | 1 |
19Q LOSS WILD-TYPE | 126 | 85 | 154 |
P value = 4.14e-05 (Chi-square test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
19Q LOSS CNV | 20 | 2 | 1 | 3 | 2 |
19Q LOSS WILD-TYPE | 129 | 127 | 48 | 50 | 113 |
P value = 3.57e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
19Q LOSS CNV | 2 | 2 | 24 |
19Q LOSS WILD-TYPE | 25 | 220 | 222 |
P value = 0.000325 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
19Q LOSS CNV | 21 | 2 | 2 |
19Q LOSS WILD-TYPE | 148 | 113 | 86 |
P value = 5.31e-06 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
19Q LOSS CNV | 2 | 2 | 17 | 4 |
19Q LOSS WILD-TYPE | 97 | 136 | 93 | 21 |
P value = 9.51e-06 (Chi-square test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
20P LOSS CNV | 1 | 2 | 12 | 1 | 0 | 0 |
20P LOSS WILD-TYPE | 293 | 7 | 142 | 12 | 22 | 12 |
P value = 3.09e-08 (Chi-square test), Q value = 2.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
21Q LOSS CNV | 3 | 2 | 25 | 2 | 2 | 0 |
21Q LOSS WILD-TYPE | 291 | 7 | 129 | 11 | 20 | 12 |
P value = 4.33e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
21Q LOSS CNV | 0 | 4 | 28 |
21Q LOSS WILD-TYPE | 27 | 218 | 218 |
P value = 0.000334 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 115 | 88 |
21Q LOSS CNV | 21 | 1 | 5 |
21Q LOSS WILD-TYPE | 148 | 114 | 83 |
P value = 0.000211 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 99 | 138 | 110 | 25 |
21Q LOSS CNV | 9 | 1 | 14 | 3 |
21Q LOSS WILD-TYPE | 90 | 137 | 96 | 22 |
P value = 1.02e-37 (Chi-square test), Q value = 8.6e-35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
22Q LOSS CNV | 1 | 1 | 79 | 3 | 6 | 0 |
22Q LOSS WILD-TYPE | 293 | 8 | 75 | 10 | 16 | 12 |
P value = 2.01e-07 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 89 | 155 |
22Q LOSS CNV | 46 | 24 | 12 |
22Q LOSS WILD-TYPE | 100 | 65 | 143 |
P value = 5.3e-11 (Chi-square test), Q value = 4.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 149 | 129 | 49 | 53 | 115 |
22Q LOSS CNV | 53 | 15 | 9 | 8 | 3 |
22Q LOSS WILD-TYPE | 96 | 114 | 40 | 45 | 112 |
P value = 1.82e-07 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 222 | 246 |
22Q LOSS CNV | 6 | 17 | 65 |
22Q LOSS WILD-TYPE | 21 | 205 | 181 |
P value = 4.76e-06 (Chi-square test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 294 | 9 | 154 | 13 | 22 | 12 |
XQ LOSS CNV | 0 | 0 | 15 | 0 | 1 | 0 |
XQ LOSS WILD-TYPE | 294 | 9 | 139 | 13 | 21 | 12 |
-
Mutation data file = broad_values_by_arm.mutsig.cluster.txt
-
Molecular subtypes file = UCEC-TP.transferedmergedcluster.txt
-
Number of patients = 504
-
Number of significantly arm-level cnvs = 80
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.