Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	42	0.63666	1	0.19316	1	1	1	0.7331	1	0.32364	1	0.023588	1	0.49533	1	0.13058	1
1q gain	0 (0%)	33	0.75537	1	0.35079	1	0.248	1	0.73562	1	0.28677	1	0.5675	1	0.68199	1	0.66082	1
2p gain	0 (0%)	35	0.76692	1	0.012768	1	0.055173	1	0.046173	1	0.25357	1	0.037081	1	0.070373	1	0.0072614	1
2q gain	0 (0%)	39	0.23332	1	0.015841	1	0.0011838	0.68	0.039871	1	0.042827	1	0.0028869	1	0.011076	1	0.00062036	0.357
3p gain	0 (0%)	51	0.46988	1	0.81101	1	1	1	0.80922	1	0.80234	1	1	1	0.81455	1	0.68489	1
3q gain	0 (0%)	38	0.05572	1	0.33361	1	0.4242	1	0.54841	1	0.29168	1	0.59333	1	0.25344	1	0.22817	1
4p gain	0 (0%)	48	0.2719	1	0.29977	1	1	1	0.71	1	0.4131	1	0.36174	1	0.42644	1	0.52891	1
4q gain	0 (0%)	53	0.04798	1	0.27815	1	0.76947	1	0.14592	1	0.67338	1	1	1	0.68702	1	1	1
5p gain	0 (0%)	39	0.062248	1	0.85848	1	0.6671	1	0.88224	1	0.71769	1	1	1	0.9694	1	1	1
5q gain	0 (0%)	51	0.85555	1	0.61141	1	1	1	0.4397	1	0.072238	1	0.11656	1	0.155	1	0.17946	1
6p gain	0 (0%)	30	0.09712	1	0.68127	1	0.94421	1	0.21654	1	0.92915	1	0.78028	1	0.95492	1	1	1
6q gain	0 (0%)	34	0.093068	1	0.42391	1	0.94242	1	0.23536	1	1	1	0.74403	1	0.80197	1	1	1
7p gain	0 (0%)	46	0.020087	1	0.51669	1	0.45444	1	0.095835	1	0.47642	1	0.11549	1	0.34434	1	0.076355	1
7q gain	0 (0%)	45	0.55104	1	0.63059	1	0.53318	1	0.71646	1	0.95735	1	0.79289	1	0.91734	1	1	1
8p gain	0 (0%)	41	0.44133	1	0.69616	1	0.24802	1	0.57592	1	0.67741	1	1	1	0.72459	1	0.8254	1
8q gain	0 (0%)	30	0.039171	1	0.16785	1	0.045469	1	0.79187	1	0.76971	1	0.67984	1	0.84163	1	0.50067	1
9p gain	0 (0%)	53	0.382	1	0.76573	1	1	1	0.74156	1	0.8327	1	0.62539	1	0.83606	1	1	1
10p gain	0 (0%)	42	0.79954	1	0.10592	1	0.26898	1	0.24485	1	0.67741	1	0.8211	1	0.85092	1	0.53084	1
10q gain	0 (0%)	41	0.16085	1	0.2093	1	0.27956	1	0.18711	1	0.48583	1	0.52154	1	0.70717	1	0.29114	1
11q gain	0 (0%)	51	0.92121	1	0.0085833	1	0.0012556	0.719	0.064207	1	0.075081	1	1	1	0.19044	1	0.68489	1
12p gain	0 (0%)	41	0.92846	1	0.032063	1	0.19437	1	0.14538	1	0.25698	1	0.67274	1	0.47499	1	0.44627	1
12q gain	0 (0%)	50	0.64002	1	0.30372	1	0.41706	1	0.43701	1	0.52814	1	1	1	0.12305	1	1	1
13q gain	0 (0%)	42	0.54462	1	0.031706	1	0.01151	1	0.020569	1	0.21693	1	0.0036692	1	0.086179	1	0.0068209	1
14q gain	0 (0%)	53	0.58874	1	0.76573	1	0.76947	1	0.74156	1	0.44193	1	0.054545	1	0.11359	1	0.026911	1
15q gain	0 (0%)	52	1	1	0.35975	1	0.67194	1	0.7665	1	0.75549	1	0.39005	1	0.52996	1	0.64287	1
16p gain	0 (0%)	52	0.088911	1	0.47874	1	0.13417	1	0.66945	1	1	1	0.072727	1	0.24031	1	0.042967	1
17q gain	0 (0%)	44	0.080241	1	0.029341	1	0.22836	1	0.20244	1	0.5359	1	0.14961	1	0.59661	1	0.10385	1
18p gain	0 (0%)	45	0.078546	1	0.04056	1	0.30214	1	0.011333	1	0.39258	1	1	1	0.49411	1	1	1
18q gain	0 (0%)	49	0.94485	1	0.18424	1	0.40213	1	0.67945	1	0.61664	1	0.33892	1	0.2261	1	0.50302	1
19p gain	0 (0%)	43	0.057558	1	0.12414	1	0.2698	1	0.044444	1	0.78741	1	0.26377	1	0.43574	1	0.20411	1
19q gain	0 (0%)	41	0.36552	1	0.014259	1	0.054824	1	0.0059218	1	0.16186	1	0.05776	1	0.073975	1	0.013207	1
20p gain	0 (0%)	32	0.15203	1	0.96663	1	0.33692	1	0.24001	1	0.81096	1	0.27274	1	1	1	0.48503	1
20q gain	0 (0%)	24	0.18415	1	0.98655	1	0.018741	1	0.15351	1	0.45448	1	0.27777	1	0.17803	1	0.34144	1
21q gain	0 (0%)	45	0.012249	1	0.15058	1	0.45444	1	0.61065	1	0.55156	1	0.60378	1	0.79488	1	0.78908	1
22q gain	0 (0%)	48	0.56957	1	0.92727	1	0.50287	1	0.75801	1	0.25828	1	0.53873	1	0.44622	1	0.75324	1
Xq gain	0 (0%)	44	0.4908	1	0.64989	1	0.92052	1	0.75026	1	0.8608	1	0.47742	1	0.95893	1	0.61924	1
1p loss	0 (0%)	50	0.45386	1	0.29314	1	0.56102	1	0.62542	1	0.050078	1	0.013601	1	0.027903	1	0.041079	1
1q loss	0 (0%)	52	0.29617	1	0.40468	1	0.095894	1	0.20729	1	0.024386	1	0.11656	1	0.070546	1	0.17946	1
3p loss	0 (0%)	44	0.292	1	0.74349	1	0.84455	1	0.66088	1	0.80147	1	0.2986	1	0.92373	1	0.30682	1
3q loss	0 (0%)	49	0.28541	1	0.46515	1	0.87967	1	0.56782	1	0.54667	1	0.12614	1	0.18938	1	0.086115	1
4p loss	0 (0%)	35	0.4717	1	0.28359	1	0.13256	1	0.11804	1	0.17005	1	0.19997	1	0.2682	1	0.20307	1
4q loss	0 (0%)	34	0.29452	1	0.018663	1	0.0020801	1	0.0015294	0.875	0.012501	1	1	1	0.12454	1	1	1
5p loss	0 (0%)	50	0.21857	1	0.32132	1	0.355	1	0.37815	1	0.90916	1	1	1	0.43622	1	0.7101	1
5q loss	0 (0%)	44	0.065792	1	0.020227	1	0.42417	1	0.41698	1	1	1	0.8023	1	0.067457	1	0.80825	1
6p loss	0 (0%)	53	0.15675	1	0.32039	1	1	1	0.78387	1	0.8327	1	0.62539	1	0.83606	1	1	1
6q loss	0 (0%)	50	0.7505	1	0.78918	1	0.2581	1	0.80174	1	0.77063	1	0.093301	1	0.4696	1	0.13159	1
7p loss	0 (0%)	49	0.7702	1	0.76051	1	0.46583	1	0.31039	1	0.51585	1	0.73767	1	0.37658	1	1	1
7q loss	0 (0%)	48	0.73022	1	0.7105	1	1	1	0.71	1	0.50379	1	1	1	1	1	1	1
8p loss	0 (0%)	40	0.25298	1	0.79427	1	0.42614	1	0.71647	1	0.96734	1	0.032085	1	0.78105	1	0.12023	1
8q loss	0 (0%)	51	0.22082	1	0.56024	1	0.72183	1	0.4705	1	0.88645	1	0.41143	1	0.90109	1	0.24577	1
9p loss	0 (0%)	31	0.07389	1	0.011165	1	0.70323	1	0.87225	1	0.72629	1	0.17673	1	0.79405	1	0.33635	1
9q loss	0 (0%)	30	0.054383	1	0.0059456	1	0.78787	1	0.42822	1	0.096014	1	0.030608	1	0.33948	1	0.076253	1
10p loss	0 (0%)	40	0.27751	1	0.0043898	1	0.51477	1	0.011211	1	0.40089	1	0.83678	1	0.42916	1	0.56289	1
10q loss	0 (0%)	44	0.1542	1	0.11597	1	0.42417	1	0.575	1	0.69135	1	0.62477	1	0.86361	1	0.48913	1
11p loss	0 (0%)	36	0.94108	1	0.052397	1	0.40257	1	0.41221	1	0.44716	1	0.86198	1	0.46461	1	0.61927	1
11q loss	0 (0%)	39	0.64467	1	0.011463	1	0.42614	1	0.47941	1	0.33243	1	0.48096	1	0.34731	1	0.48195	1
12p loss	0 (0%)	46	0.61678	1	0.28261	1	0.68531	1	0.73965	1	0.72819	1	0.11549	1	0.7159	1	0.25224	1
12q loss	0 (0%)	46	0.45449	1	0.6084	1	1	1	0.86836	1	0.64232	1	0.24631	1	0.7159	1	0.11371	1
13q loss	0 (0%)	41	0.37182	1	0.00042603	0.245	0.58893	1	0.7331	1	0.19811	1	0.53911	1	0.3638	1	0.5357	1
14q loss	0 (0%)	34	0.5142	1	0.337	1	0.13256	1	0.31736	1	0.72387	1	1	1	0.5834	1	1	1
15q loss	0 (0%)	30	0.27396	1	0.57201	1	0.94278	1	0.96182	1	0.54903	1	0.5914	1	0.6117	1	0.88672	1
16p loss	0 (0%)	28	0.60548	1	0.30104	1	0.41336	1	0.24328	1	0.37758	1	0.17989	1	0.30411	1	0.68361	1
16q loss	0 (0%)	23	0.45078	1	0.65506	1	0.19745	1	0.19873	1	0.74022	1	0.21568	1	0.51609	1	0.8696	1
17p loss	0 (0%)	33	0.49244	1	0.19551	1	1	1	0.98207	1	0.6245	1	0.6564	1	0.74875	1	0.66082	1
17q loss	0 (0%)	44	0.70481	1	0.35522	1	0.36294	1	0.28384	1	0.8608	1	0.47742	1	0.95893	1	0.61924	1
18p loss	0 (0%)	45	0.19627	1	0.10122	1	0.095611	1	0.19577	1	0.068967	1	0.34328	1	0.11999	1	0.13227	1
18q loss	0 (0%)	40	0.1706	1	0.064179	1	0.10556	1	0.078786	1	0.022818	1	0.047373	1	0.074771	1	0.014741	1
19p loss	0 (0%)	45	0.65845	1	0.028656	1	0.14604	1	0.15824	1	0.30162	1	1	1	0.38272	1	0.78908	1
19q loss	0 (0%)	48	0.25142	1	0.020751	1	0.87967	1	0.8372	1	0.25828	1	1	1	1	1	1	1
21q loss	0 (0%)	45	0.16505	1	0.52034	1	0.69984	1	0.81164	1	0.95735	1	1	1	0.74325	1	0.78908	1
22q loss	0 (0%)	27	0.53703	1	0.62416	1	0.66068	1	0.80854	1	0.35372	1	0.22649	1	0.42857	1	0.10603	1
Xq loss	0 (0%)	48	0.008638	1	0.11363	1	0.39984	1	0.32538	1	0.78858	1	0.36174	1	0.32032	1	0.52891	1