Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q22)	0 (0%)	14	0.2199	1	0.21288	1	0.13634	1	0.26059	1	0.18538	1	0.39469	1	0.24249	1	0.12736	1
Amp Peak  2(2p14)	0 (0%)	28	0.56018	1	0.025005	1	0.0030662	1	0.072693	1	0.48767	1	0.13763	1	0.38299	1	0.22425	1
Amp Peak  3(2q13)	0 (0%)	27	0.049655	1	0.016461	1	0.10543	1	0.38192	1	1	1	0.50435	1	0.84199	1	0.68849	1
Amp Peak  4(3p25.1)	0 (0%)	36	0.00027772	0.136	0.46678	1	0.29897	1	0.4976	1	0.22998	1	0.011146	1	0.46461	1	0.063877	1
Amp Peak  5(3q26.2)	0 (0%)	19	0.043204	1	0.0093978	1	0.10485	1	0.13883	1	0.34819	1	0.49529	1	0.73022	1	0.28903	1
Amp Peak  6(4p16.3)	0 (0%)	31	0.0011727	0.569	0.14019	1	0.34464	1	0.40269	1	0.97561	1	0.41851	1	0.87742	1	0.33635	1
Amp Peak  7(5p13.2)	0 (0%)	30	0.09712	1	0.54797	1	0.46053	1	0.60887	1	0.92893	1	0.42183	1	0.97674	1	1	1
Amp Peak  8(6p24.2)	0 (0%)	19	0.14859	1	0.96737	1	0.93839	1	0.72578	1	0.87538	1	0.29663	1	0.86267	1	0.5152	1
Amp Peak  9(8p11.21)	0 (0%)	24	0.60519	1	0.40568	1	0.79123	1	0.45047	1	0.70597	1	0.67125	1	0.76793	1	1	1
Amp Peak 10(8q11.23)	0 (0%)	19	0.16545	1	0.093737	1	0.25707	1	0.21906	1	0.89764	1	0.85386	1	0.78512	1	1	1
Amp Peak 11(8q24.21)	0 (0%)	14	0.014421	1	0.72229	1	0.21232	1	0.43218	1	0.038708	1	0.036413	1	0.017441	1	0.014138	1
Amp Peak 12(8q24.21)	0 (0%)	16	0.0014539	0.702	0.32837	1	0.12248	1	0.2164	1	0.046945	1	0.047373	1	0.018326	1	0.014741	1
Amp Peak 13(10q22.2)	0 (0%)	30	0.09712	1	0.47023	1	0.88911	1	0.85188	1	0.72629	1	0.28225	1	0.59897	1	0.67558	1
Amp Peak 14(11q13.1)	0 (0%)	37	0.29381	1	0.60632	1	0.58661	1	0.52986	1	0.75941	1	0.7231	1	0.66834	1	1	1
Amp Peak 15(12q12)	0 (0%)	34	0.18979	1	0.070983	1	0.39565	1	0.81023	1	0.92804	1	0.87246	1	0.68968	1	1	1
Amp Peak 16(12q15)	0 (0%)	39	0.54419	1	0.6132	1	0.16311	1	0.57251	1	0.79864	1	0.57311	1	0.559	1	0.84129	1
Amp Peak 17(13q31.3)	0 (0%)	31	0.65895	1	0.41535	1	0.11525	1	0.089322	1	0.085925	1	0.0026309	1	0.031083	1	0.0089624	1
Amp Peak 18(16p11.2)	0 (0%)	36	0.0096279	1	0.2813	1	0.40257	1	0.21216	1	0.76153	1	0.52935	1	0.40085	1	0.53088	1
Amp Peak 19(17q12)	0 (0%)	29	0.47709	1	0.17702	1	0.18154	1	0.6319	1	0.34208	1	0.8909	1	0.64176	1	0.68361	1
Amp Peak 20(17q25.1)	0 (0%)	25	0.042611	1	0.027931	1	1	1	0.3097	1	0.77955	1	0.67125	1	0.60215	1	0.77	1
Amp Peak 21(19p13.2)	0 (0%)	37	0.04905	1	0.24825	1	0.59922	1	0.94033	1	0.3459	1	0.29663	1	0.21391	1	0.14476	1
Amp Peak 22(19q12)	0 (0%)	12	0.00038806	0.189	0.0003832	0.187	0.08361	1	0.0392	1	0.46376	1	0.17464	1	0.27373	1	0.35288	1
Amp Peak 23(20q11.21)	0 (0%)	9	0.016579	1	0.40107	1	0.17558	1	0.38568	1	0.4208	1	0.13558	1	0.32974	1	0.29168	1
Amp Peak 24(20q11.21)	0 (0%)	10	0.41102	1	0.64974	1	0.38	1	0.86836	1	0.34047	1	0.5864	1	0.29959	1	0.78428	1
Amp Peak 25(Xp11.21)	0 (0%)	28	0.26835	1	0.54273	1	0.74671	1	0.2828	1	0.028008	1	0.0097634	1	0.081196	1	0.020789	1
Del Peak  1(1p36.21)	0 (0%)	37	0.47677	1	0.37943	1	0.82197	1	0.35873	1	0.1341	1	0.0096404	1	0.11983	1	0.013137	1
Del Peak  2(2q22.1)	0 (0%)	44	0.8619	1	0.72897	1	0.83657	1	0.69909	1	0.8608	1	0.2986	1	0.65241	1	0.19679	1
Del Peak  3(3p21.1)	0 (0%)	20	0.30784	1	0.3184	1	0.38613	1	0.0997	1	0.38518	1	0.85386	1	0.3003	1	0.60411	1
Del Peak  4(3p14.1)	0 (0%)	26	0.88622	1	0.63665	1	0.49133	1	0.34627	1	0.088452	1	0.88282	1	0.20643	1	0.50067	1
Del Peak  5(3q13.31)	0 (0%)	38	0.9004	1	0.16697	1	0.58102	1	0.98294	1	0.94247	1	0.49529	1	0.64037	1	0.49483	1
Del Peak  6(4q22.1)	0 (0%)	19	0.079598	1	0.048556	1	0.044832	1	0.021859	1	0.012844	1	0.353	1	0.02498	1	0.10195	1
Del Peak  7(4q34.3)	0 (0%)	19	0.06034	1	0.018532	1	0.0040389	1	0.05519	1	0.0030299	1	0.70792	1	0.0083221	1	0.35282	1
Del Peak  8(5q11.2)	0 (0%)	30	0.078593	1	0.097119	1	0.5553	1	0.17428	1	0.54903	1	0.42183	1	0.077937	1	1	1
Del Peak  9(6q26)	0 (0%)	45	0.96392	1	0.67028	1	0.11654	1	0.81392	1	0.30162	1	0.27574	1	0.19644	1	0.27038	1
Del Peak 10(7q11.22)	0 (0%)	39	0.64467	1	0.71159	1	0.2516	1	0.5682	1	0.94101	1	1	1	0.7557	1	1	1
Del Peak 11(7q36.2)	0 (0%)	36	0.03215	1	0.17126	1	0.29897	1	0.4976	1	0.40191	1	0.06669	1	0.54658	1	0.19695	1
Del Peak 12(8p23.2)	0 (0%)	26	0.030926	1	0.93824	1	0.46053	1	0.66722	1	1	1	0.88282	1	0.72626	1	1	1
Del Peak 13(9p23)	0 (0%)	22	0.055789	1	0.13537	1	0.83065	1	0.38345	1	0.50281	1	0.19997	1	0.88831	1	0.63362	1
Del Peak 14(9q21.13)	0 (0%)	17	0.081818	1	0.3062	1	0.93174	1	0.62253	1	0.47926	1	0.5597	1	0.6753	1	0.56289	1
Del Peak 15(9q33.3)	0 (0%)	18	0.22124	1	0.10969	1	0.46873	1	0.5312	1	1	1	0.84189	1	0.85415	1	1	1
Del Peak 16(10q21.1)	0 (0%)	38	0.21842	1	0.39186	1	0.55061	1	0.38064	1	0.46857	1	0.353	1	0.31318	1	0.35282	1
Del Peak 17(10q23.31)	0 (0%)	36	0.089521	1	0.12553	1	0.42824	1	0.12384	1	0.76153	1	1	1	0.59005	1	0.73041	1
Del Peak 18(11p15.5)	0 (0%)	31	0.39236	1	0.73909	1	1	1	0.57758	1	0.72629	1	0.78028	1	0.23835	1	0.67558	1
Del Peak 19(11q14.1)	0 (0%)	30	0.25392	1	0.20182	1	0.88914	1	0.39338	1	0.26958	1	0.17989	1	0.26066	1	0.34731	1
Del Peak 20(11q24.2)	0 (0%)	29	0.494	1	0.034279	1	0.36923	1	0.95862	1	0.24875	1	0.34619	1	0.25164	1	0.50093	1
Del Peak 21(12q23.1)	0 (0%)	36	0.78746	1	0.87823	1	0.48765	1	0.77412	1	0.94938	1	0.048402	1	0.92808	1	0.37576	1
Del Peak 22(12q24.31)	0 (0%)	36	0.5968	1	0.82597	1	0.064641	1	0.25536	1	0.56102	1	0.15334	1	0.14997	1	0.37576	1
Del Peak 23(13q12.11)	0 (0%)	27	0.84608	1	0.020263	1	0.46692	1	0.26864	1	0.78669	1	0.17989	1	0.53661	1	0.34731	1
Del Peak 24(13q14.2)	0 (0%)	25	0.52767	1	0.0011839	0.573	0.14753	1	0.043546	1	0.60798	1	0.22684	1	0.26942	1	0.073167	1
Del Peak 25(14q21.1)	0 (0%)	28	0.12502	1	0.05387	1	0.041946	1	0.049214	1	0.37758	1	0.49866	1	0.35546	1	0.59133	1
Del Peak 26(15q14)	0 (0%)	10	0.10006	1	0.02805	1	0.82857	1	0.72493	1	0.43864	1	0.5571	1	0.34234	1	0.76374	1
Del Peak 27(16q23.1)	0 (0%)	17	0.27242	1	0.39635	1	0.29056	1	0.17389	1	0.86554	1	1	1	0.48099	1	0.70021	1
Del Peak 28(17p13.1)	0 (0%)	14	0.014421	1	0.058642	1	0.080949	1	0.17992	1	0.13175	1	0.5005	1	0.06185	1	0.40653	1
Del Peak 29(17q21.32)	0 (0%)	38	0.51591	1	0.61005	1	0.084194	1	0.04765	1	0.22448	1	1	1	0.18181	1	0.70763	1
Del Peak 30(18q22.2)	0 (0%)	30	0.0051445	1	0.34104	1	0.34464	1	0.13329	1	0.02187	1	0.015124	1	0.090407	1	0.009681	1
Del Peak 31(19p13.3)	0 (0%)	9	0.013889	1	0.027946	1	0.014778	1	0.060494	1	0.014915	1	0.033815	1	0.0082842	1	0.11053	1
Del Peak 32(19q13.33)	0 (0%)	39	0.010557	1	0.0090349	1	0.0021796	1	0.015646	1	0.22193	1	0.48096	1	0.559	1	0.48195	1
Del Peak 33(20p12.1)	0 (0%)	47	0.35504	1	0.67138	1	0.7316	1	0.36453	1	0.22037	1	0.40305	1	0.31743	1	0.29168	1
Del Peak 34(22q13.31)	0 (0%)	16	0.56453	1	0.40029	1	0.65452	1	0.79055	1	0.57748	1	0.36764	1	0.48601	1	0.36472	1
Del Peak 35(Xp21.1)	0 (0%)	37	0.61439	1	0.53505	1	0.68092	1	0.52214	1	0.37844	1	0.7231	1	0.72377	1	0.72079	1
Del Peak 36(Xq25)	0 (0%)	32	0.18989	1	0.23915	1	0.40306	1	0.15143	1	0.63113	1	0.88194	1	0.54448	1	0.87845	1