Broad GDAC analyses__2014_01_15__skcm Run Status : SKCM

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF
SKCM	386	320	374	119	374	0	354	0	343	205	344

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	InProcess	Successful
1	TM-Aggregate_Gene_Status	0	0	1
2	TM-Aggregate_Molecular_Subtype_Clusters	0	0	1
3	TM-Append_CustomClinical	0	0	1
4	TM-CoMut1.5	0	0	1
5	TM-CoMut2.0	0	0	1
6	TM-CoMutCV	0	0	1
7	TM-CoMutMerged	0	0	1
8	TM-CopyNumberLowPass_Gistic2	0	0	1
9	TM-CopyNumber_Clustering_CNMF	0	0	1
10	TM-CopyNumber_Clustering_CNMF_thresholded	0	0	1
11	TM-CopyNumber_Gistic2	0	0	1
12	TM-CopyNumber_Gistic2_Postprocess_Focal	0	0	1
13	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	0	1
14	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	0	1
15	TM-Correlate_Clinical_vs_Methylation	0	0	1
16	TM-Correlate_Clinical_vs_miR	1	0	0
17	TM-Correlate_Clinical_vs_miRseq	0	0	1
18	TM-Correlate_Clinical_vs_Molecular_Subtypes	0	0	1
19	TM-Correlate_Clinical_vs_mRNA	1	0	0
20	TM-Correlate_Clinical_vs_mRNAseq	0	0	1
21	TM-Correlate_Clinical_vs_Mutation	0	0	1
22	TM-Correlate_Clinical_vs_RPPA	0	0	1
23	TM-Correlate_CopyNumber_vs_miR	1	0	0
24	TM-Correlate_CopyNumber_vs_mRNA	1	0	0
25	TM-Correlate_CopyNumber_vs_mRNAseq	0	0	1
26	TM-Correlate_Methylation_vs_mRNA	0	0	1
27	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1
28	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1
29	TM-Correlate_molecularSubtype_vs_Mutation	0	0	1
30	TM-GenerateStickFigures1.5	0	0	1
31	TM-GenerateStickFigures2.0	0	0	1
32	TM-GenerateStickFiguresCV	0	0	1
33	TM-GenerateStickFiguresMerged	0	0	1
34	TM-LegoPlotter1.5	0	0	1
35	TM-LegoPlotter2.0	0	0	1
36	TM-LegoPlotterCV	0	0	1
37	TM-LegoPlotterMerged	0	0	1
38	TM-MergeMutSigRunResults	0	0	1
39	TM-Methylation_Clustering_CNMF	0	0	1
40	TM-Methylation_Preprocess	0	0	1
41	TM-miRseq_Clustering_CNMF	0	0	1
42	TM-miRseq_Clustering_Consensus	0	0	1
43	TM-miRseq_Mature_Clustering_CNMF	0	0	1
44	TM-miRseq_Mature_Clustering_Consensus	0	0	1
45	TM-miRseq_Mature_Preprocess	0	0	1
46	TM-miRseq_Preprocess	0	0	1
47	TM-miR_Clustering_CNMF	1	0	0
48	TM-miR_Clustering_Consensus	1	0	0
49	TM-miR_FindDirectTargets	1	0	0
50	TM-mRNAseq_Clustering_CNMF	0	0	1
51	TM-mRNAseq_Clustering_Consensus	0	0	1
52	TM-mRNA_Clustering_CNMF	1	0	0
53	TM-mRNA_Clustering_Consensus	1	0	0
54	TM-mRNA_Preprocess_Median	1	0	0
55	TM-Mutation_Assessor	0	0	1
56	TM-Mutation_CHASM	0	1	0
57	TM-MutSigNozzleReport1.5	0	0	1
58	TM-MutSigNozzleReport2.0	0	0	1
59	TM-MutSigNozzleReportCV	0	0	1
60	TM-MutSigNozzleReportMerged	0	0	1
61	TM-MutSigPreprocess1.5	0	0	1
62	TM-MutSigPreprocess2.0	0	0	1
63	TM-MutSigRun1.5	0	0	1
64	TM-MutSigRun2.0	0	0	1
65	TM-MutSigRunCV	0	0	1
66	TM-ParadigmPreprocess_mRNA	1	0	0
67	TM-ParadigmPreprocess_RNASeq	0	0	1
68	TM-Paradigm_mRNA	1	0	0
69	TM-Paradigm_mRNA_And_CopyNumber	1	0	0
70	TM-Paradigm_Prepare_mRNA	1	0	0
71	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0
72	TM-Paradigm_Prepare_RNASeq	0	0	1
73	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	0	0	1
74	TM-Paradigm_Preprocess_mRNA	1	0	0
75	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0
76	TM-Paradigm_Preprocess_RNASeq	0	0	1
77	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	0	1
78	TM-Paradigm_Report_Preprocess_mRNA	1	0	0
79	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0
80	TM-Paradigm_Report_Preprocess_RNASeq	0	0	1
81	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	0	1
82	TM-Paradigm_RNASeq	0	0	1
83	TM-Paradigm_RNASeq_And_Copy_Number	0	0	1
84	TM-Pathway_FindEnrichedGenes	1	0	0
85	TM-Pathway_Hotnet	0	0	1
86	TM-Pathway_Paradigm_mRNA	1	0	0
87	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0
88	TM-Pathway_Paradigm_RNASeq	0	0	1
89	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	0	0	1
90	TM-ProcessCoverageForMutSig1.5	0	0	1
91	TM-ProcessCoverageForMutSig2.0	0	0	1
92	TM-RPPA_Clustering_CNMF	0	0	1
93	TM-RPPA_Clustering_Consensus	0	0	1
	Total	22	1	70

This table generated on Fri Feb 28 11:06:47 2014

Broad GDAC Analyses Status analyses__2014_01_15__skcm Run for Tumor Type: SKCM

Broad GDAC Analyses Status
analyses__2014_01_15__skcm Run for Tumor Type: SKCM