Broad GDAC Analyses Status
analyses__2014_01_15__ucec Run for Tumor Type: UCEC

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
UCEC545481515106522545130513200248

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-Append_CustomClinical00010
4TP-CoMut1.500010
5TP-CoMut2.000010
6TP-CoMutCV00010
7TP-CoMutMerged00010
8TP-CopyNumberLowPass_Gistic200010
9TP-CopyNumber_Clustering_CNMF00010
10TP-CopyNumber_Clustering_CNMF_thresholded00010
11TP-CopyNumber_Gistic200010
12TP-CopyNumber_Gistic2_Postprocess_Focal00010
13TP-Correlate_Clinical_vs_CopyNumber_Arm00010
14TP-Correlate_Clinical_vs_CopyNumber_Focal00010
15TP-Correlate_Clinical_vs_Methylation00010
16TP-Correlate_Clinical_vs_miR10000
17TP-Correlate_Clinical_vs_miRseq00010
18TP-Correlate_Clinical_vs_Molecular_Subtypes00010
19TP-Correlate_Clinical_vs_mRNA00010
20TP-Correlate_Clinical_vs_mRNAseq00010
21TP-Correlate_Clinical_vs_Mutation00010
22TP-Correlate_Clinical_vs_RPPA00010
23TP-Correlate_CopyNumber_vs_miR10000
24TP-Correlate_CopyNumber_vs_mRNA00010
25TP-Correlate_CopyNumber_vs_mRNAseq00010
26TP-Correlate_Methylation_vs_mRNA00010
27TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
28TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
29TP-Correlate_molecularSubtype_vs_Mutation00010
30TP-GenerateStickFigures1.500010
31TP-GenerateStickFigures2.000010
32TP-GenerateStickFiguresCV00010
33TP-GenerateStickFiguresMerged00010
34TP-LegoPlotter1.500010
35TP-LegoPlotter2.000010
36TP-LegoPlotterCV00010
37TP-LegoPlotterMerged00010
38TP-MergeMutSigRunResults00010
39TP-Methylation_Clustering_CNMF00010
40TP-Methylation_Preprocess00010
41TP-miRseq_Clustering_CNMF00010
42TP-miRseq_Clustering_Consensus00010
43TP-miRseq_Mature_Clustering_CNMF00010
44TP-miRseq_Mature_Clustering_Consensus00010
45TP-miRseq_Mature_Preprocess00010
46TP-miRseq_Preprocess00010
47TP-miR_Clustering_CNMF10000
48TP-miR_Clustering_Consensus10000
49TP-miR_FindDirectTargets10000
50TP-mRNAseq_Clustering_CNMF00010
51TP-mRNAseq_Clustering_Consensus00010
52TP-mRNA_Clustering_CNMF00010
53TP-mRNA_Clustering_Consensus00010
54TP-mRNA_Preprocess_Median00010
55TP-Mutation_Assessor00010
56TP-Mutation_CHASM00100
57TP-MutSigNozzleReport1.500010
58TP-MutSigNozzleReport2.000010
59TP-MutSigNozzleReportCV00010
60TP-MutSigNozzleReportMerged00010
61TP-MutSigPreprocess1.500010
62TP-MutSigPreprocess2.000010
63TP-MutSigRun1.500010
64TP-MutSigRun2.000010
65TP-MutSigRunCV00010
66TP-ParadigmPreprocess_mRNA00010
67TP-ParadigmPreprocess_RNASeq00010
68TP-Paradigm_mRNA00010
69TP-Paradigm_mRNA_And_CopyNumber00010
70TP-Paradigm_Prepare_mRNA00010
71TP-Paradigm_Prepare_mRNA_And_Copy_Number00010
72TP-Paradigm_Prepare_RNASeq00010
73TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
74TP-Paradigm_Preprocess_mRNA00010
75TP-Paradigm_Preprocess_mRNA_And_Copy_Number00010
76TP-Paradigm_Preprocess_RNASeq00010
77TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
78TP-Paradigm_Report_Preprocess_mRNA00010
79TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber00010
80TP-Paradigm_Report_Preprocess_RNASeq00010
81TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
82TP-Paradigm_RNASeq00010
83TP-Paradigm_RNASeq_And_Copy_Number00010
84TP-Pathway_FindEnrichedGenes00010
85TP-Pathway_Hotnet00010
86TP-Pathway_Paradigm_mRNA00010
87TP-Pathway_Paradigm_mRNA_And_Copy_Number00010
88TP-Pathway_Paradigm_RNASeq00010
89TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
90TP-ProcessCoverageForMutSig1.500010
91TP-ProcessCoverageForMutSig2.000010
92TP-RPPA_Clustering_CNMF00010
93TP-RPPA_Clustering_Consensus00010
Total501870

This table generated on Fri Feb 28 11:06:48 2014