		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	51 (23%)	170	0.027894	1	0.032558	1	0.38698	1	0.44867	1	0.50643	1	0.86764	1	0.59862	1	0.23484	1	0.88067	1	0.88459	1
1q gain	70 (32%)	151	0.22583	1	0.23791	1	0.49797	1	0.75936	1	0.29555	1	0.96945	1	0.70895	1	0.57226	1	0.90772	1	0.83473	1
2p gain	66 (30%)	155	6.9716e-06	0.00554	0.00086785	0.658	0.39443	1	0.7827	1	0.14576	1	0.29004	1	0.12155	1	0.045906	1	0.1746	1	0.009735	1
2q gain	31 (14%)	190	0.12496	1	0.072459	1	0.52925	1	0.7019	1	0.12228	1	0.8732	1	0.30826	1	0.33843	1	0.3291	1	0.20613	1
3p gain	75 (34%)	146	0.0008089	0.616	0.18038	1	0.063922	1	0.30851	1	0.0050692	1	0.066686	1	0.0008184	0.622	0.00045244	0.347	0.00082477	0.626	0.0024511	1
3q gain	98 (44%)	123	0.0018849	1	0.85056	1	0.43085	1	0.9262	1	0.22948	1	0.21706	1	0.0033139	1	0.0062265	1	0.00035002	0.271	0.0023282	1
4p gain	23 (10%)	198	0.003929	1	0.076057	1	0.47848	1	0.65503	1	0.31553	1	0.16957	1	0.047596	1	1	1	0.078096	1	0.12179	1
4q gain	14 (6%)	207	0.0014089	1	0.18631	1	0.56884	1	0.16106	1	0.75944	1	0.54919	1	0.017492	1	0.43644	1	0.067358	1	0.82483	1
5p gain	91 (41%)	130	0.0017823	1	0.17861	1	0.042189	1	0.23652	1	0.07998	1	0.01253	1	0.054782	1	0.10025	1	0.13614	1	0.10851	1
5q gain	31 (14%)	190	0.0070029	1	0.36683	1	0.017213	1	0.6593	1	0.95992	1	0.38794	1	0.11318	1	0.055955	1	0.33437	1	0.55141	1
6p gain	33 (15%)	188	0.38405	1	0.68842	1	0.78563	1	0.17723	1	0.36984	1	0.25826	1	0.38404	1	0.33053	1	0.64646	1	0.37823	1
6q gain	20 (9%)	201	0.54381	1	0.63621	1	0.93387	1	0.10051	1	0.077084	1	0.27297	1	0.17528	1	0.13025	1	0.33263	1	0.14921	1
7p gain	94 (43%)	127	0.00010755	0.0842	0.00093365	0.707	0.023214	1	0.8579	1	0.32745	1	0.89034	1	0.24879	1	0.24917	1	0.1919	1	0.21049	1
7q gain	82 (37%)	139	0.00049423	0.379	0.0070225	1	0.18279	1	0.91694	1	0.81401	1	0.37225	1	0.45232	1	0.18665	1	0.35048	1	0.34302	1
8p gain	44 (20%)	177	0.011176	1	0.11897	1	0.099034	1	0.024966	1	0.087053	1	0.45114	1	0.5757	1	0.35751	1	0.099672	1	0.0063337	1
8q gain	101 (46%)	120	0.21836	1	0.067943	1	0.045276	1	0.16195	1	0.61858	1	0.60945	1	0.95444	1	0.8643	1	0.58625	1	0.44387	1
9p gain	35 (16%)	186	4.3904e-05	0.0346	0.75622	1	0.72541	1	0.59473	1	0.18159	1	0.28234	1	0.78905	1	0.93957	1	0.26651	1	0.12559	1
9q gain	29 (13%)	192	0.28976	1	0.065232	1	0.77611	1	0.031492	1	0.02164	1	0.01255	1	0.74271	1	0.86284	1	0.015969	1	0.069348	1
10p gain	64 (29%)	157	2.6338e-06	0.0021	0.33196	1	0.85371	1	0.49305	1	0.26402	1	0.07871	1	0.67453	1	0.49913	1	0.4981	1	0.90512	1
10q gain	18 (8%)	203	0.32372	1	0.50184	1	0.33462	1	0.36379	1	0.61743	1	0.047482	1	0.38449	1	0.37123	1	0.48724	1	0.22569	1
11p gain	21 (10%)	200	0.046362	1	0.17963	1	0.10539	1	0.083602	1	0.012543	1	0.042114	1	0.16368	1	0.37576	1	0.052723	1	0.15309	1
11q gain	29 (13%)	192	0.0006332	0.484	0.29713	1	0.15764	1	0.01764	1	0.044372	1	0.027146	1	0.48072	1	0.88185	1	0.069593	1	0.50257	1
12p gain	67 (30%)	154	9.035e-05	0.0709	0.1145	1	0.732	1	0.52558	1	0.19431	1	0.51994	1	0.52065	1	0.047434	1	0.62329	1	0.083531	1
12q gain	49 (22%)	172	0.002326	1	0.12147	1	0.099148	1	0.024059	1	0.18172	1	0.27253	1	0.23098	1	0.15784	1	0.36771	1	0.20076	1
13q gain	57 (26%)	164	0.15416	1	0.77966	1	0.93986	1	0.92958	1	0.1912	1	0.68997	1	0.74247	1	0.51362	1	0.72761	1	0.13929	1
14q gain	37 (17%)	184	0.0097015	1	0.12588	1	0.36381	1	0.52524	1	0.014842	1	0.099979	1	0.90792	1	0.77468	1	0.18478	1	0.40594	1
15q gain	22 (10%)	199	0.16764	1	0.090142	1	0.5764	1	0.39613	1	0.29748	1	0.15598	1	0.1723	1	0.80175	1	0.82855	1	0.9079	1
16p gain	39 (18%)	182	0.076052	1	0.96313	1	0.23766	1	0.30379	1	0.63049	1	0.070765	1	0.84119	1	0.57505	1	0.77338	1	0.86054	1
16q gain	48 (22%)	173	0.10027	1	0.81531	1	0.098604	1	0.43829	1	0.64172	1	0.16283	1	0.60958	1	0.48926	1	0.68691	1	0.92437	1
17p gain	32 (14%)	189	0.008432	1	0.11025	1	0.47539	1	0.46693	1	0.63315	1	0.61457	1	0.0012547	0.946	0.00031313	0.243	0.044175	1	0.0085711	1
17q gain	77 (35%)	144	0.070438	1	0.0075269	1	0.36403	1	0.62639	1	0.25445	1	0.1815	1	0.020375	1	0.010925	1	0.027169	1	0.021244	1
18p gain	67 (30%)	154	1.0362e-07	8.29e-05	0.00032518	0.252	0.93523	1	0.82409	1	0.00038142	0.294	0.18067	1	0.53695	1	0.23097	1	0.23997	1	0.076869	1
18q gain	32 (14%)	189	0.020589	1	0.073072	1	0.19935	1	0.17139	1	0.0069813	1	0.57964	1	0.067186	1	0.2651	1	0.34068	1	0.62298	1
19p gain	44 (20%)	177	0.067769	1	0.052642	1	0.43984	1	0.77547	1	0.077437	1	0.007791	1	0.29498	1	0.26746	1	0.23808	1	0.11007	1
19q gain	75 (34%)	146	3.1297e-05	0.0247	0.0036413	1	0.35663	1	0.77273	1	0.67021	1	0.064642	1	0.25972	1	0.12507	1	0.49749	1	0.23195	1
20p gain	114 (52%)	107	0.010465	1	0.029795	1	0.86295	1	0.01884	1	0.59613	1	0.0299	1	0.14113	1	0.034938	1	0.026494	1	0.080205	1
20q gain	127 (57%)	94	0.0019283	1	0.019718	1	0.73702	1	0.12039	1	0.83742	1	0.25256	1	0.25276	1	0.053144	1	0.041982	1	0.16871	1
21q gain	67 (30%)	154	0.00020408	0.159	0.024506	1	0.6136	1	0.56751	1	0.23929	1	0.20948	1	0.00017567	0.137	3.3384e-05	0.0263	0.093607	1	0.0032212	1
22q gain	32 (14%)	189	0.00049573	0.379	0.015101	1	0.47537	1	0.61956	1	0.14827	1	0.12317	1	0.043404	1	0.65039	1	0.25193	1	0.41177	1
xq gain	23 (10%)	198	0.70868	1	0.12827	1	0.40091	1	0.84757	1	0.058424	1	0.83556	1	0.74095	1	0.34161	1	0.63664	1	0.79569	1
1p loss	18 (8%)	203	0.017832	1	0.10308	1	0.33257	1	0.14335	1	0.41531	1	0.074666	1	0.70553	1	0.17275	1	0.75111	1	0.61658	1
1q loss	20 (9%)	201	0.082282	1	0.188	1	0.34227	1	0.96012	1	0.44417	1	0.040964	1	1	1	0.081179	1	0.38163	1	0.27119	1
2p loss	23 (10%)	198	0.16543	1	0.41939	1	0.84127	1	0.75914	1	0.47486	1	0.13994	1	0.3665	1	0.80877	1	0.35367	1	0.84118	1
2q loss	50 (23%)	171	0.00022817	0.178	0.17811	1	0.60206	1	0.30838	1	0.21041	1	0.048529	1	0.85329	1	0.88436	1	0.22089	1	0.29043	1
3p loss	29 (13%)	192	0.096651	1	0.093828	1	0.018103	1	0.061238	1	1.1471e-07	9.17e-05	4.1191e-05	0.0325	0.28344	1	0.040769	1	0.00010906	0.0853	0.00041372	0.318
3q loss	11 (5%)	210	0.63216	1	0.27487	1	0.0015852	1	0.012318	1	0.014197	1	0.077734	1	0.58885	1	0.46261	1	0.027502	1	0.022683	1
4p loss	77 (35%)	144	0.0011233	0.849	0.56806	1	0.62681	1	0.4432	1	0.062852	1	0.0086942	1	0.068773	1	0.42633	1	0.040887	1	0.78454	1
4q loss	80 (36%)	141	0.00040184	0.309	0.24852	1	0.23878	1	0.15765	1	0.071169	1	0.035622	1	0.039365	1	0.33294	1	0.0073448	1	0.35105	1
5p loss	34 (15%)	187	0.74805	1	0.83633	1	0.3905	1	0.60205	1	0.32366	1	0.068957	1	0.628	1	0.75578	1	0.41305	1	0.90455	1
5q loss	84 (38%)	137	0.09441	1	0.14874	1	0.79956	1	0.26574	1	0.015648	1	0.00036114	0.279	0.74863	1	0.025115	1	0.21748	1	0.15852	1
6p loss	54 (24%)	167	0.038791	1	0.0032937	1	0.81529	1	0.74143	1	0.94471	1	0.18107	1	0.39534	1	0.12275	1	0.38097	1	0.15336	1
6q loss	79 (36%)	142	4.8394e-06	0.00385	0.00074354	0.567	0.83686	1	0.55942	1	0.57836	1	0.178	1	0.80777	1	0.023657	1	0.060934	1	0.056935	1
7p loss	8 (4%)	213	0.66693	1	1	1	0.38457	1	0.92436	1	0.46104	1	0.57471	1	0.3732	1	0.11724	1	0.28706	1	0.61046	1
7q loss	13 (6%)	208	0.50737	1	1	1	0.31231	1	0.83346	1	0.26119	1	0.60713	1	0.36524	1	0.0021818	1	0.60517	1	0.074376	1
8p loss	99 (45%)	122	6.0695e-05	0.0477	0.10341	1	0.10885	1	0.054802	1	0.026404	1	0.048475	1	0.048387	1	0.049347	1	0.019977	1	0.068642	1
8q loss	21 (10%)	200	0.064241	1	0.62426	1	0.33332	1	0.016695	1	0.12712	1	0.055577	1	0.05171	1	0.0109	1	0.013594	1	0.041219	1
9p loss	93 (42%)	128	0.00034383	0.266	0.077557	1	0.30011	1	0.069695	1	0.05815	1	0.020132	1	0.61341	1	0.25629	1	0.23055	1	0.19984	1
9q loss	87 (39%)	134	0.0054672	1	0.007553	1	0.031935	1	0.0070133	1	0.0084733	1	1.7839e-05	0.0141	0.66571	1	0.33126	1	0.0092369	1	0.0088288	1
10p loss	41 (19%)	180	0.0093074	1	0.088132	1	0.69895	1	0.58466	1	0.18243	1	0.14114	1	0.69184	1	0.26735	1	0.060947	1	0.062801	1
10q loss	75 (34%)	146	0.0011809	0.892	0.0023312	1	0.46827	1	0.90415	1	0.14074	1	0.14466	1	0.12369	1	0.2645	1	0.19313	1	0.20483	1
11p loss	89 (40%)	132	1.0813e-05	0.00857	0.00010063	0.0789	0.2561	1	0.80259	1	0.12556	1	0.0024366	1	0.042181	1	0.048772	1	0.0085248	1	0.42021	1
11q loss	69 (31%)	152	2.5923e-06	0.00207	0.00065957	0.503	0.063082	1	0.13557	1	0.063254	1	0.024394	1	0.64468	1	0.66285	1	0.38657	1	0.66718	1
12p loss	21 (10%)	200	0.48807	1	0.4512	1	0.87047	1	0.40987	1	0.72434	1	0.78395	1	0.33602	1	0.23163	1	0.91773	1	0.84539	1
12q loss	28 (13%)	193	0.10314	1	0.81545	1	0.33332	1	0.54173	1	0.60779	1	0.17171	1	0.78012	1	0.5208	1	0.61672	1	0.23178	1
13q loss	47 (21%)	174	0.016789	1	0.15061	1	0.0057349	1	0.029168	1	0.0039814	1	0.30333	1	0.64697	1	0.48638	1	0.087305	1	0.0020414	1
14q loss	62 (28%)	159	0.0045653	1	0.15933	1	0.1183	1	0.04804	1	0.14974	1	0.040426	1	0.010938	1	0.038645	1	0.040696	1	0.20638	1
15q loss	74 (33%)	147	0.00038285	0.295	0.0013278	0.998	0.099887	1	0.28902	1	0.0090817	1	0.043478	1	0.16975	1	0.13065	1	0.14603	1	0.25919	1
16p loss	57 (26%)	164	1.8577e-05	0.0147	0.017433	1	0.56363	1	0.47141	1	0.19464	1	0.39948	1	1	1	0.30667	1	0.41931	1	0.16487	1
16q loss	52 (24%)	169	0.00018391	0.143	0.022779	1	0.17558	1	0.77482	1	0.4173	1	0.40638	1	0.74856	1	0.15712	1	0.98386	1	0.26305	1
17p loss	97 (44%)	124	0.0045858	1	0.5421	1	0.80467	1	0.55399	1	0.10587	1	0.56863	1	0.43708	1	0.69287	1	0.41835	1	0.2989	1
17q loss	26 (12%)	195	0.42008	1	0.39054	1	0.89605	1	0.7828	1	0.11008	1	0.77042	1	0.86314	1	0.88185	1	0.56804	1	0.58187	1
18p loss	50 (23%)	171	0.19869	1	0.78127	1	0.4784	1	0.25694	1	0.48337	1	0.13341	1	0.42993	1	0.053045	1	0.31907	1	0.6472	1
18q loss	78 (35%)	143	0.023043	1	0.45454	1	0.56077	1	0.95524	1	0.46164	1	0.95697	1	0.023158	1	0.0012958	0.976	0.25236	1	0.43534	1
19p loss	57 (26%)	164	0.0050174	1	0.4813	1	0.76654	1	0.37026	1	0.0025061	1	0.037475	1	0.6736	1	0.12549	1	0.48778	1	0.59252	1
19q loss	33 (15%)	188	0.08767	1	1	1	0.20763	1	0.1008	1	0.28367	1	0.47797	1	0.20933	1	0.8943	1	0.20705	1	0.16615	1
20p loss	14 (6%)	207	0.09687	1	0.5465	1	0.28242	1	0.023765	1	0.7345	1	0.25196	1	0.39216	1	0.52371	1	0.32543	1	0.94372	1
20q loss	6 (3%)	215	0.044374	1	0.51254	1	0.33077	1	0.28698	1	0.618	1	0.86822	1	1	1	0.59283	1	1	1	0.80397	1
21q loss	35 (16%)	186	0.6943	1	0.32369	1	0.11418	1	0.18894	1	0.046805	1	0.176	1	0.58294	1	0.75342	1	0.077229	1	0.32554	1
22q loss	84 (38%)	137	3.2814e-07	0.000262	0.0050266	1	0.54841	1	0.015487	1	0.0029094	1	0.01705	1	0.64614	1	0.034035	1	0.009384	1	0.019531	1
xq loss	48 (22%)	173	0.00049458	0.379	0.11487	1	0.98127	1	1	1	0.46618	1	0.59044	1	0.082038	1	0.78876	1	0.4939	1	0.48217	1
