
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/6156025/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/6154388/CESC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/6154388/CESC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/6156025/transformed.cor.cli.txt"

nPatients in clinical file=84, in cluster file=171, common to both=78
[1] 53 78
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           42                            36 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           42                            36 
[1] "AMP PEAK  2(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           18                            60 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           18                            60 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           59                            19 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           59                            19 
[1] "AMP PEAK  4(3Q28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         58                          20 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         58                          20 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          8                          70 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          8                          70 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            28                             50 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            28                             50 
[1] "AMP PEAK  7(6P21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                            21                             57 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                            21                             57 
[1] "AMP PEAK  8(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           15                            63 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           15                            63 
[1] "AMP PEAK  9(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            33                             45 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            33                             45 
[1] "AMP PEAK 10(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           12                            66 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           12                            66 
[1] "AMP PEAK 11(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           6                           72 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           6                           72 
[1] "AMP PEAK 12(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                            10                             68 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                            10                             68 
[1] "AMP PEAK 13(11Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            13                             65 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            13                             65 
[1] "AMP PEAK 14(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            13                             65 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            13                             65 
[1] "AMP PEAK 15(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                            16                             62 
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                            16                             62 
[1] "AMP PEAK 16(16P13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                             14                              64 
  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                             14                              64 
[1] "AMP PEAK 17(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                           9                           69 
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                           9                           69 
[1] "AMP PEAK 18(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                            20                             58 
  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                            20                             58 
[1] "AMP PEAK 19(19Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                             23                              55 
  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                             23                              55 
[1] "AMP PEAK 20(19Q13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                             22                              56 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                             22                              56 
[1] "AMP PEAK 21(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             31                              47 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             31                              47 
[1] "AMP PEAK 22(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         14                          64 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         14                          64 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            12                             66 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            12                             66 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           12                            66 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           12                            66 
[1] "DEL PEAK  3(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           31                            47 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           31                            47 
[1] "DEL PEAK  4(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                           31                            47 
  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                           31                            47 
[1] "DEL PEAK  5(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           15                            63 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           15                            63 
[1] "DEL PEAK  6(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           21                            57 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           21                            57 
[1] "DEL PEAK  7(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         21                          57 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         21                          57 
[1] "DEL PEAK  8(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           22                            56 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           22                            56 
[1] "DEL PEAK  9(6P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                            9                            69 
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                            9                            69 
[1] "DEL PEAK 10(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         23                          55 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         23                          55 
[1] "DEL PEAK 11(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                         14                          64 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                         14                          64 
[1] "DEL PEAK 12(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                             18                              60 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                             18                              60 
[1] "DEL PEAK 13(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                            27                             51 
  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                            27                             51 
[1] "DEL PEAK 14(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                            44                             34 
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                            44                             34 
[1] "DEL PEAK 15(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          49                           29 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          49                           29 
[1] "DEL PEAK 16(13Q12.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                             24                              54 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                             24                              54 
[1] "DEL PEAK 17(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            26                             52 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            26                             52 
[1] "DEL PEAK 18(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                             10                              68 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                             10                              68 
[1] "DEL PEAK 19(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            17                             61 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            17                             61 
[1] "DEL PEAK 20(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            16                             62 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            16                             62 
[1] "DEL PEAK 21(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            14                             64 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            14                             64 
[1] "DEL PEAK 22(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          22                           56 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          22                           56 
[1] "DEL PEAK 23(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            14                             64 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            14                             64 
[1] "DEL PEAK 24(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            19                             59 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            19                             59 
[1] "DEL PEAK 25(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                            18                             60 
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                            18                             60 
[1] "DEL PEAK 26(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                              9                              69 
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                              9                              69 
[1] "DEL PEAK 27(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                            13                             65 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                            13                             65 
[1] "DEL PEAK 28(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                            14                             64 
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                            14                             64 
[1] "DEL PEAK 29(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             18                              60 
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             18                              60 
[1] "DEL PEAK 30(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                           22                            56 
  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                           22                            56 
[1] "DEL PEAK 31(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                            15                             63 
  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                            15                             63 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "HISTOLOGICALTYPE"                      
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NUMBERPACKYEARSSMOKED"                 
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "GLEASON_SCORE"                         
[18] "PSA_VALUE"                             
[19] "DAYS_TO_PSA"                           
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 78 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
        1505          925           NA         1112         5385           NA 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
          NA         1616           NA           NA           NA         2382 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
        2669         1791           NA           81         2127         2892 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
         183          208            8           53           40           25 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
          19          440          441           54            9           10 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EK-A2PI TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
           8           21           NA          619          241          211 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
         447          135          185           37           37           30 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
          66            2           31           44           48           45 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
          24          106           41           31          773           NA 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
         632          454         4482         3780           NA         3571 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
        2948         2393         2493          808         1106            3 
TCGA-LP-A4AV TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
          NA           27            2          422            1          904 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
           2          132          113          103          112          174 
Variable 1:'AGE':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=63,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'HISTOLOGICAL.TYPE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBERPACKYEARSSMOKED':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PATHOLOGY.T.STAGE"                     
[3] "PATHOLOGY.N.STAGE"                     
[4] "PATHOLOGY.M.STAGE"                     
[5] "HISTOLOGICAL.TYPE"                     
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[7] "NUMBERPACKYEARSSMOKED"                 
[8] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 78 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=39, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
49 21  1  1 
[1] "table(vv)"
vv
      T1 T2+T3+T4 
      49       23 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
49 21  1  1 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 49

$Class1_nSamples
[1] 23

$Class0_label
[1] "T1"

$Class1_label
[1] "T2+T3+T4"


      T1 T2+T3+T4 
      49       23 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=5, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=11, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=5, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) MUTATED   37  3
  AMP PEAK  1(1Q21.3) WILD-TYPE 28  8
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           40                            36 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            3                             8 
$`AMP PEAK  1(1Q21.3) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04         5.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
       35.61         2.43        78.31        87.75        58.88         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       69.93         6.02         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5ZD TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
       14.50         1.78         0.69         6.94        14.70         4.44 
TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI TCGA-FU-A40J TCGA-HG-A2PA 
        6.08         1.22         2.17         1.45         1.35        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL 
       20.78        14.93       117.40        78.67        81.96        36.36 
TCGA-LP-A4AU TCGA-MU-A51Y TCGA-MY-A5BE TCGA-Q1-A6DW 
        0.10        13.87         0.07         5.72 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-DS-A5RQ 
       11.44        67.46        40.93        36.76        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 
        0.26        14.47         0.30         0.33         0.26        20.35 
TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        7.92         1.22         0.99         0.07         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HM-A3JJ TCGA-IR-A3L7 
        1.48         0.79         3.48         1.02        21.67       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK TCGA-LP-A4AW TCGA-LP-A4AX 
      124.27        66.81        96.92        26.56         0.89         0.07 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.03        29.72         4.34         3.72         3.39         3.68 

  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                       10.405                         3.700 
[1] "0.1 - 177.0 (10.4)" "0.0 - 147.3 (3.7)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
[1] "hr=" "3.7"
D1V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  1(1Q21.3) MUTATED   23       15
  AMP PEAK  1(1Q21.3) WILD-TYPE 26        8
D1V3, multiclass
          clus
vv         AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  T1                                23                            26
  T2+T3+T4                          15                             8
D1V4, binary
                               cls
clus                             0  1
  AMP PEAK  1(1Q21.3) MUTATED   25 12
  AMP PEAK  1(1Q21.3) WILD-TYPE 24  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     25   12
  AMP PEAK  1(1Q21.3) WILD-TYPE   24    9
   clus
vv  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  0                          25                            24
  1                          12                             9
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1Q21.3) MUTATED   26  2 11
  AMP PEAK  1(1Q21.3) WILD-TYPE 19  0 15
D1V5, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                          26                            19
  M1                           2                             0
  MX                          11                            15
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                                 38
  AMP PEAK  1(1Q21.3) WILD-TYPE                               28
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  1(1Q21.3) MUTATED                                               0
  AMP PEAK  1(1Q21.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                                     4
  AMP PEAK  1(1Q21.3) WILD-TYPE                                   4
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  1(1Q21.3) MUTATED                                           0
  AMP PEAK  1(1Q21.3) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  1(1Q21.3) MUTATED                                              0
  AMP PEAK  1(1Q21.3) WILD-TYPE                                            2
D1V6, multiclass
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1Q21.3) MUTATED    9 33
  AMP PEAK  1(1Q21.3) WILD-TYPE  4 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      9   33
  AMP PEAK  1(1Q21.3) WILD-TYPE    4   32
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            9                             4
  YES                          33                            32
D1V8, continuous
D1V9, continuous

Clustering(2) Variable = AMP PEAK  2(2P24.3) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(2P24.3) MUTATED   15  2
  AMP PEAK  2(2P24.3) WILD-TYPE 50  9
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           17                            59 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                            2                             9 
$`AMP PEAK  2(2P24.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A439 
       30.41         5.46        35.61         6.02         1.32        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A2QG 
        1.78         0.30         7.92         6.94         1.22         0.99 
TCGA-FU-A3HY TCGA-FU-A40J TCGA-IR-A3LA TCGA-IR-A3LC TCGA-Q1-A5R1 
        0.07         1.35       124.27       117.40         3.72 

$`AMP PEAK  2(2P24.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        11.44        36.56       177.04        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.84         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
        0.82         0.62        14.47         0.33         0.26         0.69 
TCGA-EX-A1H5 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A3EO 
       20.35        14.70         4.44         6.08         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78        14.93       147.35 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81        96.92        78.67        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.39         3.68         5.72 

  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                       124.27                        177.04 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                         5.46                          6.84 
[1] "0.1 - 124.3 (5.5)" "0.0 - 177.0 (6.8)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  2(2P24.3) MUTATED"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  2(2P24.3) MUTATED"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  2(2P24.3) MUTATED"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  2(2P24.3) MUTATED    9        7
  AMP PEAK  2(2P24.3) WILD-TYPE 40       16
D2V3, multiclass
          clus
vv         AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  T1                                 9                            40
  T2+T3+T4                           7                            16
D2V4, binary
                               cls
clus                             0  1
  AMP PEAK  2(2P24.3) MUTATED   11  5
  AMP PEAK  2(2P24.3) WILD-TYPE 38 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED     11    5
  AMP PEAK  2(2P24.3) WILD-TYPE   38   16
   clus
vv  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  0                          11                            38
  1                           5                            16
                               vv
clus                            M0 M1 MX
  AMP PEAK  2(2P24.3) MUTATED   10  0  5
  AMP PEAK  2(2P24.3) WILD-TYPE 35  2 21
D2V5, multiclass
    clus
vv   AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  M0                          10                            35
  M1                           0                             2
  MX                           5                            21
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                                 14
  AMP PEAK  2(2P24.3) WILD-TYPE                               52
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  2(2P24.3) MUTATED                                               0
  AMP PEAK  2(2P24.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                                     2
  AMP PEAK  2(2P24.3) WILD-TYPE                                   6
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  2(2P24.3) MUTATED                                           1
  AMP PEAK  2(2P24.3) WILD-TYPE                                         0
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  2(2P24.3) MUTATED                                              1
  AMP PEAK  2(2P24.3) WILD-TYPE                                            1
D2V6, multiclass
D2V7, binary
                               cls
clus                             0  1
  AMP PEAK  2(2P24.3) MUTATED    3 15
  AMP PEAK  2(2P24.3) WILD-TYPE 10 50
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED      3   15
  AMP PEAK  2(2P24.3) WILD-TYPE   10   50
     clus
vv    AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  NO                            3                            10
  YES                          15                            50
D2V8, continuous
D2V9, continuous

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(3Q26.2) MUTATED   48  9
  AMP PEAK  3(3Q26.2) WILD-TYPE 17  2
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           57                            19 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                            9                             2 
$`AMP PEAK  3(3Q26.2) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       87.75        36.76         2.66        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A3L1 
       14.50         0.30         0.26         0.69        20.35         6.94 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3WB 
        4.44         6.08         1.22         1.45         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        3.48         1.35        25.41        21.67        20.78        14.93 
TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU 
      124.27       117.40        78.67        81.96        36.36         0.10 
TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DW 
        3.72         3.39         5.72 

$`AMP PEAK  3(3Q26.2) WILD-TYPE`
TCGA-DR-A0ZM TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A449 
       58.88        14.47         1.78         0.33         7.92        14.70 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A57G TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK TCGA-LP-A4AX 
        1.02       147.35        66.81        96.92        26.56         0.07 
TCGA-Q1-A6DV 
        3.68 

  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                         6.84                          2.17 
[1] "0.0 - 177.0 (6.8)" "0.1 - 147.3 (2.2)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
[1] "hr=" "1.2"
D3V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  3(3Q26.2) MUTATED   34       19
  AMP PEAK  3(3Q26.2) WILD-TYPE 15        4
D3V3, multiclass
          clus
vv         AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  T1                                34                            15
  T2+T3+T4                          19                             4
D3V4, binary
                               cls
clus                             0  1
  AMP PEAK  3(3Q26.2) MUTATED   35 17
  AMP PEAK  3(3Q26.2) WILD-TYPE 14  4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED     35   17
  AMP PEAK  3(3Q26.2) WILD-TYPE   14    4
   clus
vv  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  0                          35                            14
  1                          17                             4
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(3Q26.2) MUTATED   34  1 20
  AMP PEAK  3(3Q26.2) WILD-TYPE 11  1  6
D3V5, multiclass
    clus
vv   AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  M0                          34                            11
  M1                           1                             1
  MX                          20                             6
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  3(3Q26.2) MUTATED                                 55
  AMP PEAK  3(3Q26.2) WILD-TYPE                               11
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  3(3Q26.2) MUTATED                                               0
  AMP PEAK  3(3Q26.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  3(3Q26.2) MUTATED                                     2
  AMP PEAK  3(3Q26.2) WILD-TYPE                                   6
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  3(3Q26.2) MUTATED                                           1
  AMP PEAK  3(3Q26.2) WILD-TYPE                                         0
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  3(3Q26.2) MUTATED                                              1
  AMP PEAK  3(3Q26.2) WILD-TYPE                                            1
D3V6, multiclass
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(3Q26.2) MUTATED   12 47
  AMP PEAK  3(3Q26.2) WILD-TYPE  1 18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED     12   47
  AMP PEAK  3(3Q26.2) WILD-TYPE    1   18
     clus
vv    AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  NO                           12                             1
  YES                          47                            18
D3V8, continuous
D3V9, continuous

Clustering(4) Variable = AMP PEAK  4(3Q28) MUTATION ANALYSIS
D4V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  4(3Q28) MUTATED   48  8
  AMP PEAK  4(3Q28) WILD-TYPE 17  3
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         56                          20 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                          8                           3 
$`AMP PEAK  4(3Q28) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       87.75        36.76         2.66        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A3L1 
       14.50         0.30         0.26         0.69        20.35         6.94 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3WB 
        4.44         6.08         1.22         1.45         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA 
        3.48         1.35        25.41        20.78        14.93       124.27 
TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
      117.40        78.67        81.96        36.36         0.10         0.89 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DW 
        3.39         5.72 

$`AMP PEAK  4(3Q28) WILD-TYPE`
TCGA-DR-A0ZM TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A449 
       58.88        14.47         1.78         0.33         7.92        14.70 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A57G TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK 
        1.02        21.67       147.35        66.81        96.92        26.56 
TCGA-LP-A4AX TCGA-Q1-A6DV 
        0.07         3.68 

  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                       0.03                        0.07 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                     177.04                      147.35 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                      6.460                       2.925 
[1] "0.0 - 177.0 (6.5)" "0.1 - 147.3 (2.9)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
[1] "hr=" "1.3"
D4V2, continuous
                             vv
clus                          T1 T2+T3+T4
  AMP PEAK  4(3Q28) MUTATED   33       19
  AMP PEAK  4(3Q28) WILD-TYPE 16        4
D4V3, multiclass
          clus
vv         AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  T1                              33                          16
  T2+T3+T4                        19                           4
D4V4, binary
                             cls
clus                           0  1
  AMP PEAK  4(3Q28) MUTATED   35 16
  AMP PEAK  4(3Q28) WILD-TYPE 14  5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(3Q28) MUTATED     35   16
  AMP PEAK  4(3Q28) WILD-TYPE   14    5
   clus
vv  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  0                        35                          14
  1                        16                           5
                             vv
clus                          M0 M1 MX
  AMP PEAK  4(3Q28) MUTATED   34  1 19
  AMP PEAK  4(3Q28) WILD-TYPE 11  1  7
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  M0                        34                          11
  M1                         1                           1
  MX                        19                           7
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  4(3Q28) MUTATED                                 54
  AMP PEAK  4(3Q28) WILD-TYPE                               12
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  4(3Q28) MUTATED                                               0
  AMP PEAK  4(3Q28) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  4(3Q28) MUTATED                                     2
  AMP PEAK  4(3Q28) WILD-TYPE                                   6
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  4(3Q28) MUTATED                                           1
  AMP PEAK  4(3Q28) WILD-TYPE                                         0
                             vv
clus                          MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  4(3Q28) MUTATED                                              1
  AMP PEAK  4(3Q28) WILD-TYPE                                            1
D4V6, multiclass
D4V7, binary
                             cls
clus                           0  1
  AMP PEAK  4(3Q28) MUTATED   11 47
  AMP PEAK  4(3Q28) WILD-TYPE  2 18
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(3Q28) MUTATED     11   47
  AMP PEAK  4(3Q28) WILD-TYPE    2   18
     clus
vv    AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  NO                         11                           2
  YES                        47                          18
D4V8, continuous
D4V9, continuous

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
D5V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  5(4Q12) MUTATED    6  1
  AMP PEAK  5(4Q12) WILD-TYPE 59 10
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          7                          69 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          1                          10 
$`AMP PEAK  5(4Q12) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MN TCGA-DS-A3LQ TCGA-FU-A23K TCGA-IR-A3LF TCGA-IR-A3LH 
       53.13        40.93         6.02         1.22        96.92        78.67 
TCGA-MY-A5BF 
        4.34 

$`AMP PEAK  5(4Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       67.46        35.61         2.43        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       36.76         2.66        69.93        95.08         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 
        1.74         1.32         0.82         0.62        14.47        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 
        1.78         0.30         0.33         0.26         0.69        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L 
        7.92         6.94        14.70         4.44         6.08         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.99         2.17         0.07         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       21.67        20.78        14.93       147.35       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
      117.40        81.96        26.56        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 
        0.07        13.87         0.03        29.72         0.07         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.39         3.68         5.72 

  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                       1.22                        0.03 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                      96.92                      177.04 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                      40.93                        5.72 
[1] "1.2 - 96.9 (40.9)" "0.0 - 177.0 (5.7)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
[1] "hr=" "1.9"
D5V2, continuous
                             vv
clus                          T1 T2+T3+T4
  AMP PEAK  5(4Q12) MUTATED    3        3
  AMP PEAK  5(4Q12) WILD-TYPE 46       20
D5V3, multiclass
          clus
vv         AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  T1                               3                          46
  T2+T3+T4                         3                          20
D5V4, binary
                             cls
clus                           0  1
  AMP PEAK  5(4Q12) MUTATED    4  2
  AMP PEAK  5(4Q12) WILD-TYPE 45 19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(4Q12) MUTATED      4    2
  AMP PEAK  5(4Q12) WILD-TYPE   45   19
   clus
vv  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  0                         4                          45
  1                         2                          19
                             vv
clus                          M0 M1 MX
  AMP PEAK  5(4Q12) MUTATED    3  0  3
  AMP PEAK  5(4Q12) WILD-TYPE 42  2 23
D5V5, multiclass
    clus
vv   AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  M0                         3                          42
  M1                         0                           2
  MX                         3                          23
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  5(4Q12) MUTATED                                  7
  AMP PEAK  5(4Q12) WILD-TYPE                               59
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  5(4Q12) MUTATED                                               1
  AMP PEAK  5(4Q12) WILD-TYPE                                             0
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  5(4Q12) MUTATED                                     0
  AMP PEAK  5(4Q12) WILD-TYPE                                   8
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  5(4Q12) MUTATED                                           0
  AMP PEAK  5(4Q12) WILD-TYPE                                         1
                             vv
clus                          MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  5(4Q12) MUTATED                                              0
  AMP PEAK  5(4Q12) WILD-TYPE                                            2
D5V6, multiclass
D5V7, binary
                             cls
clus                           0  1
  AMP PEAK  5(4Q12) MUTATED    2  6
  AMP PEAK  5(4Q12) WILD-TYPE 11 59
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(4Q12) MUTATED      2    6
  AMP PEAK  5(4Q12) WILD-TYPE   11   59
     clus
vv    AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  NO                          2                          11
  YES                         6                          59
D5V8, continuous
D5V9, continuous

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(5P15.33) MUTATED   22  4
  AMP PEAK  6(5P15.33) WILD-TYPE 43  7
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            26                             50 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                             4                              7 
$`AMP PEAK  6(5P15.33) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1MN TCGA-DS-A0VL TCGA-DS-A0VM 
       49.48        30.41        11.44        40.93         2.66        69.93 
TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 
        6.02         1.32        14.47        14.50         1.78        20.35 
TCGA-EX-A3L1 TCGA-EX-A69L TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA 
        6.94         4.44         1.22         0.07         1.45        25.41 
TCGA-HM-A3JJ TCGA-IR-A3LH TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW TCGA-MY-A5BE 
       21.67        78.67        26.56        36.36         0.89         0.07 
TCGA-Q1-A6DT TCGA-Q1-A6DW 
        3.39         5.72 

$`AMP PEAK  6(5P15.33) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       36.56       177.04         5.46        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VN 
        2.43        78.31        87.75        58.88        36.76        95.08 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S 
        6.84         0.26         1.74         0.82         0.62         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M 
        0.33         0.26         0.69         7.92        14.70         6.08 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         0.99         2.17         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 
        0.79         3.48         1.35         1.02        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI 
      147.35       124.27        66.81       117.40        96.92        81.96 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF 
        0.10         0.07        13.87         0.03        29.72         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A6DV 
        3.72         3.68 

  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                         78.67                         177.04 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                          9.19                           4.90 
[1] "0.1 - 78.7 (9.2)"  "0.0 - 177.0 (4.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
[1] "hr=" "1.4"
D6V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK  6(5P15.33) MUTATED   16        8
  AMP PEAK  6(5P15.33) WILD-TYPE 33       15
D6V3, multiclass
          clus
vv         AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  T1                                 16                             33
  T2+T3+T4                            8                             15
D6V4, binary
                                cls
clus                              0  1
  AMP PEAK  6(5P15.33) MUTATED   16  8
  AMP PEAK  6(5P15.33) WILD-TYPE 33 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(5P15.33) MUTATED     16    8
  AMP PEAK  6(5P15.33) WILD-TYPE   33   13
   clus
vv  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  0                           16                             33
  1                            8                             13
                                vv
clus                             M0 M1 MX
  AMP PEAK  6(5P15.33) MUTATED   17  0  9
  AMP PEAK  6(5P15.33) WILD-TYPE 28  2 17
D6V5, multiclass
    clus
vv   AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  M0                           17                             28
  M1                            0                              2
  MX                            9                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  6(5P15.33) MUTATED                                 28
  AMP PEAK  6(5P15.33) WILD-TYPE                               38
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  6(5P15.33) MUTATED                                               0
  AMP PEAK  6(5P15.33) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  6(5P15.33) MUTATED                                     0
  AMP PEAK  6(5P15.33) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  6(5P15.33) MUTATED                                           0
  AMP PEAK  6(5P15.33) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  6(5P15.33) MUTATED                                              0
  AMP PEAK  6(5P15.33) WILD-TYPE                                            2
D6V6, multiclass
D6V7, binary
                                cls
clus                              0  1
  AMP PEAK  6(5P15.33) MUTATED    4 24
  AMP PEAK  6(5P15.33) WILD-TYPE  9 41
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(5P15.33) MUTATED      4   24
  AMP PEAK  6(5P15.33) WILD-TYPE    9   41
     clus
vv    AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  NO                             4                              9
  YES                           24                             41
D6V8, continuous
D6V9, continuous

Clustering(7) Variable = AMP PEAK  7(6P21.33) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(6P21.33) MUTATED   17  3
  AMP PEAK  7(6P21.33) WILD-TYPE 48  8
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                            20                             56 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                             3                              8 
$`AMP PEAK  7(6P21.33) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A2LY 
       49.48        30.41        11.44         5.46        35.61        78.31 
TCGA-DS-A0VM TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
       69.93        14.50         1.78         6.08         1.22         1.22 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-IR-A3LF TCGA-IR-A3LH TCGA-LP-A4AU TCGA-LP-A4AX 
        1.02        25.41        96.92        78.67         0.10         0.07 
TCGA-MU-A5YI TCGA-MY-A5BD 
        0.03        29.72 

$`AMP PEAK  7(6P21.33) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       36.56       177.04        67.46        53.13         2.43        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ 
       87.75        58.88        36.76         2.66        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 
       14.47         0.30         0.33         0.26         0.69        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A2QG TCGA-FU-A3EO 
        7.92         6.94        14.70         4.44         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.07         1.02         1.45         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        3.48         1.35        21.67        20.78        14.93       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      124.27        66.81       117.40        81.96        26.56        36.36 
TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT 
        0.89        13.87         0.07         4.34         3.72         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.68         5.72 

  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                         96.92                         177.04 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                         12.97                           5.08 
[1] "0.0 - 96.9 (13.0)" "0.1 - 177.0 (5.1)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK  7(6P21.33) MUTATED   13        6
  AMP PEAK  7(6P21.33) WILD-TYPE 36       17
D7V3, multiclass
          clus
vv         AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  T1                                 13                             36
  T2+T3+T4                            6                             17
D7V4, binary
                                cls
clus                              0  1
  AMP PEAK  7(6P21.33) MUTATED   12  6
  AMP PEAK  7(6P21.33) WILD-TYPE 37 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(6P21.33) MUTATED     12    6
  AMP PEAK  7(6P21.33) WILD-TYPE   37   15
   clus
vv  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  0                           12                             37
  1                            6                             15
                                vv
clus                             M0 M1 MX
  AMP PEAK  7(6P21.33) MUTATED   14  0  5
  AMP PEAK  7(6P21.33) WILD-TYPE 31  2 21
D7V5, multiclass
    clus
vv   AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  M0                           14                             31
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  7(6P21.33) MUTATED                                 19
  AMP PEAK  7(6P21.33) WILD-TYPE                               47
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  7(6P21.33) MUTATED                                               1
  AMP PEAK  7(6P21.33) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  7(6P21.33) MUTATED                                     1
  AMP PEAK  7(6P21.33) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  7(6P21.33) MUTATED                                           0
  AMP PEAK  7(6P21.33) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  7(6P21.33) MUTATED                                              0
  AMP PEAK  7(6P21.33) WILD-TYPE                                            2
D7V6, multiclass
D7V7, binary
                                cls
clus                              0  1
  AMP PEAK  7(6P21.33) MUTATED    4 17
  AMP PEAK  7(6P21.33) WILD-TYPE  9 48
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(6P21.33) MUTATED      4   17
  AMP PEAK  7(6P21.33) WILD-TYPE    9   48
     clus
vv    AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  NO                             4                              9
  YES                           17                             48
D7V8, continuous
D7V9, continuous

Clustering(8) Variable = AMP PEAK  8(7P11.2) MUTATION ANALYSIS
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(7P11.2) MUTATED    9  6
  AMP PEAK  8(7P11.2) WILD-TYPE 56  5
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           15                            61 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            6                             5 
$`AMP PEAK  8(7P11.2) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       11.44         2.43        40.93        78.31        87.75        36.76 
TCGA-DS-A3LQ TCGA-EA-A50E TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A40J TCGA-HM-A3JJ 
        6.02         0.26         6.94         1.22         1.35        21.67 
TCGA-IR-A3LH TCGA-IR-A3LL TCGA-Q1-A6DT 
       78.67        36.36         3.39 

$`AMP PEAK  8(7P11.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       53.13        35.61        58.88         2.66        69.93        95.08 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5ZD 
       14.47        14.50         1.78         0.30         0.33         0.69 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
       20.35         7.92        14.70         4.44         6.08         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.99         2.17         0.07         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK 
        1.48         0.79         3.48         1.02        25.41        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       14.93       147.35       124.27        66.81       117.40        96.92 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        26.56         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV 
        0.03        29.72         0.07         4.34         3.72         3.68 
TCGA-Q1-A6DW 
        5.72 

  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                         0.26                          0.03 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                        87.75                        177.04 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                        11.44                          5.46 
[1] "0.3 - 87.8 (11.4)" "0.0 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
[1] "hr=" "3.6"
D8V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  8(7P11.2) MUTATED    6        6
  AMP PEAK  8(7P11.2) WILD-TYPE 43       17
D8V3, multiclass
          clus
vv         AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  T1                                 6                            43
  T2+T3+T4                           6                            17
D8V4, binary
                               cls
clus                             0  1
  AMP PEAK  8(7P11.2) MUTATED    6  6
  AMP PEAK  8(7P11.2) WILD-TYPE 43 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED      6    6
  AMP PEAK  8(7P11.2) WILD-TYPE   43   15
   clus
vv  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  0                           6                            43
  1                           6                            15
                               vv
clus                            M0 M1 MX
  AMP PEAK  8(7P11.2) MUTATED    8  0  5
  AMP PEAK  8(7P11.2) WILD-TYPE 37  2 21
D8V5, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  M0                           8                            37
  M1                           0                             2
  MX                           5                            21
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  8(7P11.2) MUTATED                                 14
  AMP PEAK  8(7P11.2) WILD-TYPE                               52
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  8(7P11.2) MUTATED                                               0
  AMP PEAK  8(7P11.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  8(7P11.2) MUTATED                                     1
  AMP PEAK  8(7P11.2) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  8(7P11.2) MUTATED                                           0
  AMP PEAK  8(7P11.2) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  8(7P11.2) MUTATED                                              0
  AMP PEAK  8(7P11.2) WILD-TYPE                                            2
D8V6, multiclass
D8V7, binary
                               cls
clus                             0  1
  AMP PEAK  8(7P11.2) MUTATED    5 10
  AMP PEAK  8(7P11.2) WILD-TYPE  8 55
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED      5   10
  AMP PEAK  8(7P11.2) WILD-TYPE    8   55
     clus
vv    AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  NO                            5                             8
  YES                          10                            55
D8V8, continuous
[1] "Remove cluster labels:"      "AMP PEAK  8(7P11.2) MUTATED"
clus
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            2                            19 
                   TCGA-BI-A0VR                    TCGA-C5-A1BI 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-DR-A0ZM 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A5RQ                    TCGA-EX-A1H5 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3TQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IR-A3LB                    TCGA-MU-A5YI 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-Q1-A6DW 
"AMP PEAK  8(7P11.2) WILD-TYPE" 
D8V9, continuous

Clustering(9) Variable = AMP PEAK  9(8Q24.21) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(8Q24.21) MUTATED   28  5
  AMP PEAK  9(8Q24.21) WILD-TYPE 37  6
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            33                             43 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                             5                              6 
$`AMP PEAK  9(8Q24.21) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04        67.46        53.13        35.61         2.43 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       87.75         2.66        69.93         6.02         0.26         1.74 
TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
       14.47         0.33         0.26         6.08         1.22         1.22 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-IR-A3LA 
        0.07         1.45         3.48         1.35         1.02       124.27 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A5YI 
       26.56        36.36         0.10         0.89         0.07         0.03 
TCGA-MY-A5BF TCGA-Q1-A6DT TCGA-Q1-A6DW 
        4.34         3.39         5.72 

$`AMP PEAK  9(8Q24.21) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MN TCGA-C5-A2LY 
       49.48        11.44        36.56         5.46        40.93        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A3HR TCGA-EA-A3HS 
       58.88        36.76        95.08         6.84         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A5ZD TCGA-EX-A1H5 
        0.62        14.50         1.78         0.30         0.69        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A2QG TCGA-FU-A3EO 
        7.92         6.94        14.70         4.44         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.02         1.58         1.48         0.79        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       20.78        14.93       147.35        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 
       78.67        81.96        13.87        29.72         0.07         3.72 
TCGA-Q1-A6DV 
        3.68 

  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                        177.04                         147.35 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                          3.39                          13.87 
[1] "0.0 - 177.0 (3.4)"  "0.1 - 147.3 (13.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
[1] "hr=" "1.4"
D9V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK  9(8Q24.21) MUTATED   23        7
  AMP PEAK  9(8Q24.21) WILD-TYPE 26       16
D9V3, multiclass
          clus
vv         AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  T1                                 23                             26
  T2+T3+T4                            7                             16
D9V4, binary
                                cls
clus                              0  1
  AMP PEAK  9(8Q24.21) MUTATED   20  9
  AMP PEAK  9(8Q24.21) WILD-TYPE 29 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(8Q24.21) MUTATED     20    9
  AMP PEAK  9(8Q24.21) WILD-TYPE   29   12
   clus
vv  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  0                           20                             29
  1                            9                             12
                                vv
clus                             M0 M1 MX
  AMP PEAK  9(8Q24.21) MUTATED   19  0 13
  AMP PEAK  9(8Q24.21) WILD-TYPE 26  2 13
D9V5, multiclass
    clus
vv   AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  M0                           19                             26
  M1                            0                              2
  MX                           13                             13
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  9(8Q24.21) MUTATED                                 29
  AMP PEAK  9(8Q24.21) WILD-TYPE                               37
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  9(8Q24.21) MUTATED                                               0
  AMP PEAK  9(8Q24.21) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  9(8Q24.21) MUTATED                                     3
  AMP PEAK  9(8Q24.21) WILD-TYPE                                   5
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  9(8Q24.21) MUTATED                                           1
  AMP PEAK  9(8Q24.21) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK  9(8Q24.21) MUTATED                                              0
  AMP PEAK  9(8Q24.21) WILD-TYPE                                            2
D9V6, multiclass
D9V7, binary
                                cls
clus                              0  1
  AMP PEAK  9(8Q24.21) MUTATED    4 29
  AMP PEAK  9(8Q24.21) WILD-TYPE  9 36
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(8Q24.21) MUTATED      4   29
  AMP PEAK  9(8Q24.21) WILD-TYPE    9   36
     clus
vv    AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  NO                             4                              9
  YES                           29                             36
D9V8, continuous
D9V9, continuous

Clustering(10) Variable = AMP PEAK 10(9P24.1) MUTATION ANALYSIS
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(9P24.1) MUTATED   12  0
  AMP PEAK 10(9P24.1) WILD-TYPE 53 11
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           12                            64 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            0                            11 
$`AMP PEAK 10(9P24.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EX-A3L1 
       49.48       177.04        69.93         6.02         6.84         6.94 
TCGA-FU-A23K TCGA-FU-A40J TCGA-IR-A3LH TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BE 
        1.22         1.35        78.67        36.36         0.10         0.07 

$`AMP PEAK 10(9P24.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       36.76         2.66        95.08         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62        14.47        14.50         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 
        0.33         0.26         0.69        20.35         7.92        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        4.44         6.08         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78        14.93       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      124.27        66.81       117.40        96.92        81.96        26.56 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF 
        0.89         0.07        13.87         0.03        29.72         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.39         3.68         5.72 

  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                         6.89                          5.59 
[1] "0.1 - 177.0 (6.9)" "0.0 - 147.3 (5.6)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
[1] "hr="     "2.6e+08"
D10V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK 10(9P24.1) MUTATED    6        6
  AMP PEAK 10(9P24.1) WILD-TYPE 43       17
D10V3, multiclass
          clus
vv         AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  T1                                 6                            43
  T2+T3+T4                           6                            17
D10V4, binary
                               cls
clus                             0  1
  AMP PEAK 10(9P24.1) MUTATED    6  6
  AMP PEAK 10(9P24.1) WILD-TYPE 43 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      6    6
  AMP PEAK 10(9P24.1) WILD-TYPE   43   15
   clus
vv  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  0                           6                            43
  1                           6                            15
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(9P24.1) MUTATED    7  0  5
  AMP PEAK 10(9P24.1) WILD-TYPE 38  2 21
D10V5, multiclass
    clus
vv   AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  M0                           7                            38
  M1                           0                             2
  MX                           5                            21
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                                 11
  AMP PEAK 10(9P24.1) WILD-TYPE                               55
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 10(9P24.1) MUTATED                                               0
  AMP PEAK 10(9P24.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                                     1
  AMP PEAK 10(9P24.1) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 10(9P24.1) MUTATED                                           0
  AMP PEAK 10(9P24.1) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 10(9P24.1) MUTATED                                              0
  AMP PEAK 10(9P24.1) WILD-TYPE                                            2
D10V6, multiclass
D10V7, binary
                               cls
clus                             0  1
  AMP PEAK 10(9P24.1) MUTATED    1 11
  AMP PEAK 10(9P24.1) WILD-TYPE 12 54
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      1   11
  AMP PEAK 10(9P24.1) WILD-TYPE   12   54
     clus
vv    AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  NO                            1                            12
  YES                          11                            54
D10V8, continuous
D10V9, continuous

Clustering(11) Variable = AMP PEAK 11(11P13) MUTATION ANALYSIS
D11V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 11(11P13) MUTATED    3  2
  AMP PEAK 11(11P13) WILD-TYPE 62  9
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           5                           71 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           2                            9 
$`AMP PEAK 11(11P13) MUTATED`
TCGA-C5-A1BN TCGA-EA-A439 TCGA-FU-A40J TCGA-IR-A3LK TCGA-Q1-A6DW 
        5.46        14.50         1.35        26.56         5.72 

$`AMP PEAK 11(11P13) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
       14.47         1.78         0.30         0.33         0.26         0.69 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.44         6.08 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.45         1.58         1.48         0.79         3.48         1.02 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        21.67        20.78        14.93       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL 
       66.81       117.40        96.92        78.67        81.96        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.07         4.34         3.72         3.39         3.68 

  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                        1.35                         0.03 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                       26.56                       177.04 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                        5.72                         6.08 
[1] "1.4 - 26.6 (5.7)"  "0.0 - 177.0 (6.1)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "AMP PEAK 11(11P13) MUTATED" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "AMP PEAK 11(11P13) MUTATED" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "AMP PEAK 11(11P13) MUTATED" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "AMP PEAK 11(11P13) MUTATED" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "AMP PEAK 11(11P13) MUTATED" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "AMP PEAK 11(11P13) MUTATED" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
[1] "hr=" "7.5"
D11V2, continuous
                              vv
clus                           T1 T2+T3+T4
  AMP PEAK 11(11P13) MUTATED    1        2
  AMP PEAK 11(11P13) WILD-TYPE 48       21
D11V3, multiclass
          clus
vv         AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  T1                                1                           48
  T2+T3+T4                          2                           21
D11V4, binary
                              cls
clus                            0  1
  AMP PEAK 11(11P13) MUTATED    2  1
  AMP PEAK 11(11P13) WILD-TYPE 47 20
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(11P13) MUTATED      2    1
  AMP PEAK 11(11P13) WILD-TYPE   47   20
   clus
vv  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  0                          2                           47
  1                          1                           20
                              vv
clus                           M0 M1 MX
  AMP PEAK 11(11P13) MUTATED    2  0  2
  AMP PEAK 11(11P13) WILD-TYPE 43  2 24
D11V5, multiclass
    clus
vv   AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  M0                          2                           43
  M1                          0                            2
  MX                          2                           24
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 11(11P13) MUTATED                                  5
  AMP PEAK 11(11P13) WILD-TYPE                               61
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 11(11P13) MUTATED                                               0
  AMP PEAK 11(11P13) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 11(11P13) MUTATED                                     1
  AMP PEAK 11(11P13) WILD-TYPE                                   7
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 11(11P13) MUTATED                                           0
  AMP PEAK 11(11P13) WILD-TYPE                                         1
                              vv
clus                           MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 11(11P13) MUTATED                                              0
  AMP PEAK 11(11P13) WILD-TYPE                                            2
D11V6, multiclass
D11V7, binary
                              cls
clus                            0  1
  AMP PEAK 11(11P13) MUTATED    1  5
  AMP PEAK 11(11P13) WILD-TYPE 12 60
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(11P13) MUTATED      1    5
  AMP PEAK 11(11P13) WILD-TYPE   12   60
     clus
vv    AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  NO                           1                           12
  YES                          5                           60
D11V8, continuous
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           2                           19 
                  TCGA-BI-A0VR                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EX-A1H5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LB                   TCGA-IR-A3LH 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MU-A5YI 
"AMP PEAK 11(11P13) WILD-TYPE" 
D11V9, continuous
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           2                           62 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A69L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A69M                   TCGA-FU-A23K 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23L                   TCGA-FU-A2QG 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3EO                   TCGA-FU-A3HY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HZ                   TCGA-FU-A3NI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TQ                   TCGA-FU-A3TX 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LL                   TCGA-LP-A4AX 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MU-A51Y                   TCGA-MU-A5YI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BD                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DV 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 

Clustering(12) Variable = AMP PEAK 12(11Q13.3) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(11Q13.3) MUTATED    7  2
  AMP PEAK 12(11Q13.3) WILD-TYPE 58  9
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             9                             67 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             2                              9 
$`AMP PEAK 12(11Q13.3) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-EA-A1QT TCGA-FU-A40J TCGA-IR-A3LA 
       11.44         5.46        53.13         0.26         1.35       124.27 
TCGA-IR-A3LH TCGA-LP-A4AX TCGA-Q1-A6DT 
       78.67         0.07         3.39 

$`AMP PEAK 12(11Q13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        30.41        36.56       177.04        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.02         6.84         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        1.32         0.82         0.62        14.47        14.50         1.78 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.30         0.33         0.26         0.69        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
        6.94        14.70         4.44         6.08         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.99         2.17         0.07         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.48         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       20.78        14.93       147.35        66.81       117.40        96.92 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y 
       81.96        26.56        36.36         0.10         0.89        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV 
        0.03        29.72         0.07         4.34         3.72         3.68 
TCGA-Q1-A6DW 
        5.72 

  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                        124.27                         177.04 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                          5.46                           6.08 
[1] "0.1 - 124.3 (5.5)" "0.0 - 177.0 (6.1)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D12V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 12(11Q13.3) MUTATED    5        2
  AMP PEAK 12(11Q13.3) WILD-TYPE 44       21
D12V3, multiclass
          clus
vv         AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  T1                                  5                             44
  T2+T3+T4                            2                             21
D12V4, binary
                                cls
clus                              0  1
  AMP PEAK 12(11Q13.3) MUTATED    5  2
  AMP PEAK 12(11Q13.3) WILD-TYPE 44 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      5    2
  AMP PEAK 12(11Q13.3) WILD-TYPE   44   19
   clus
vv  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  0                            5                             44
  1                            2                             19
                                vv
clus                             M0 M1 MX
  AMP PEAK 12(11Q13.3) MUTATED    4  0  4
  AMP PEAK 12(11Q13.3) WILD-TYPE 41  2 22
D12V5, multiclass
    clus
vv   AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  M0                            4                             41
  M1                            0                              2
  MX                            4                             22
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                                  8
  AMP PEAK 12(11Q13.3) WILD-TYPE                               58
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 12(11Q13.3) MUTATED                                               0
  AMP PEAK 12(11Q13.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                                     1
  AMP PEAK 12(11Q13.3) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 12(11Q13.3) MUTATED                                           1
  AMP PEAK 12(11Q13.3) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 12(11Q13.3) MUTATED                                              0
  AMP PEAK 12(11Q13.3) WILD-TYPE                                            2
D12V6, multiclass
D12V7, binary
                                cls
clus                              0  1
  AMP PEAK 12(11Q13.3) MUTATED    3  7
  AMP PEAK 12(11Q13.3) WILD-TYPE 10 58
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      3    7
  AMP PEAK 12(11Q13.3) WILD-TYPE   10   58
     clus
vv    AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  NO                             3                             10
  YES                            7                             58
D12V8, continuous
D12V9, continuous

Clustering(13) Variable = AMP PEAK 13(11Q22.1) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(11Q22.1) MUTATED    9  4
  AMP PEAK 13(11Q22.1) WILD-TYPE 56  7
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            13                             63 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             4                              7 
$`AMP PEAK 13(11Q22.1) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       11.44       177.04         5.46        78.31        87.75        36.76 
TCGA-DS-A0VL TCGA-EA-A43B TCGA-EX-A3L1 TCGA-FU-A40J TCGA-HM-A3JJ TCGA-IR-A3LH 
        2.66         1.78         6.94         1.35        21.67        78.67 
TCGA-LP-A4AX 
        0.07 

$`AMP PEAK 13(11Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41        36.56        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
        2.43        40.93        58.88        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
       14.47        14.50         0.30         0.33         0.26         0.69 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
       20.35         7.92        14.70         4.44         6.08         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.58         1.48         0.79         3.48         1.02        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78        14.93       147.35       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       96.92        81.96        26.56        36.36         0.10         0.89 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.39         3.68         5.72 

  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                        177.04                         147.35 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                         11.44                           5.72 
[1] "0.1 - 177.0 (11.4)" "0.0 - 147.3 (5.7)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
[1] "hr=" "1.8"
D13V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 13(11Q22.1) MUTATED    9        3
  AMP PEAK 13(11Q22.1) WILD-TYPE 40       20
D13V3, multiclass
          clus
vv         AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  T1                                  9                             40
  T2+T3+T4                            3                             20
D13V4, binary
                                cls
clus                              0  1
  AMP PEAK 13(11Q22.1) MUTATED    8  4
  AMP PEAK 13(11Q22.1) WILD-TYPE 41 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      8    4
  AMP PEAK 13(11Q22.1) WILD-TYPE   41   17
   clus
vv  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  0                            8                             41
  1                            4                             17
                                vv
clus                             M0 M1 MX
  AMP PEAK 13(11Q22.1) MUTATED    8  0  4
  AMP PEAK 13(11Q22.1) WILD-TYPE 37  2 22
D13V5, multiclass
    clus
vv   AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  M0                            8                             37
  M1                            0                              2
  MX                            4                             22
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                                 12
  AMP PEAK 13(11Q22.1) WILD-TYPE                               54
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 13(11Q22.1) MUTATED                                               0
  AMP PEAK 13(11Q22.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                                     1
  AMP PEAK 13(11Q22.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 13(11Q22.1) MUTATED                                           0
  AMP PEAK 13(11Q22.1) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 13(11Q22.1) MUTATED                                              0
  AMP PEAK 13(11Q22.1) WILD-TYPE                                            2
D13V6, multiclass
D13V7, binary
                                cls
clus                              0  1
  AMP PEAK 13(11Q22.1) MUTATED    4  9
  AMP PEAK 13(11Q22.1) WILD-TYPE  9 56
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      4    9
  AMP PEAK 13(11Q22.1) WILD-TYPE    9   56
     clus
vv    AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  NO                             4                              9
  YES                            9                             56
D13V8, continuous
[1] "Remove cluster labels:"       "AMP PEAK 13(11Q22.1) MUTATED"
clus
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             2                             19 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A5RQ                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LB                     TCGA-MU-A5YI 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-Q1-A6DW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" 
D13V9, continuous

Clustering(14) Variable = AMP PEAK 14(13Q22.1) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(13Q22.1) MUTATED    9  4
  AMP PEAK 14(13Q22.1) WILD-TYPE 56  7
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            13                             63 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             4                              7 
$`AMP PEAK 14(13Q22.1) MUTATED`
TCGA-C5-A1BN TCGA-DS-A0VM TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A50E TCGA-FU-A3HY 
        5.46        69.93         0.62         0.30         0.26         0.07 
TCGA-FU-A40J TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LK TCGA-LP-A4AW TCGA-MY-A5BE 
        1.35       147.35        66.81        26.56         0.89         0.07 
TCGA-Q1-A6DT 
        3.39 

$`AMP PEAK 14(13Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       58.88        36.76         2.66        95.08         6.02         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3Y4 TCGA-EA-A439 
        0.26         1.74         1.32         0.82        14.47        14.50 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        1.78         0.33         0.69        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.44         6.08         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         1.02         1.45         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        3.48         1.02        25.41        21.67        20.78        14.93 
TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL 
      124.27       117.40        96.92        78.67        81.96        36.36 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF 
        0.10         0.07        13.87         0.03        29.72         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.68         5.72 

  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                        147.35                         177.04 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                          1.35                           6.94 
[1] "0.1 - 147.3 (1.4)" "0.0 - 177.0 (6.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
[1] "hr=" "3.1"
D14V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 14(13Q22.1) MUTATED    8        3
  AMP PEAK 14(13Q22.1) WILD-TYPE 41       20
D14V3, multiclass
          clus
vv         AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  T1                                  8                             41
  T2+T3+T4                            3                             20
D14V4, binary
                                cls
clus                              0  1
  AMP PEAK 14(13Q22.1) MUTATED    6  5
  AMP PEAK 14(13Q22.1) WILD-TYPE 43 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      6    5
  AMP PEAK 14(13Q22.1) WILD-TYPE   43   16
   clus
vv  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  0                            6                             43
  1                            5                             16
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(13Q22.1) MUTATED    8  0  4
  AMP PEAK 14(13Q22.1) WILD-TYPE 37  2 22
D14V5, multiclass
    clus
vv   AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  M0                            8                             37
  M1                            0                              2
  MX                            4                             22
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                                 11
  AMP PEAK 14(13Q22.1) WILD-TYPE                               55
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 14(13Q22.1) MUTATED                                               0
  AMP PEAK 14(13Q22.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                                     2
  AMP PEAK 14(13Q22.1) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 14(13Q22.1) MUTATED                                           0
  AMP PEAK 14(13Q22.1) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 14(13Q22.1) MUTATED                                              0
  AMP PEAK 14(13Q22.1) WILD-TYPE                                            2
D14V6, multiclass
D14V7, binary
                                cls
clus                              0  1
  AMP PEAK 14(13Q22.1) MUTATED    1 12
  AMP PEAK 14(13Q22.1) WILD-TYPE 12 53
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      1   12
  AMP PEAK 14(13Q22.1) WILD-TYPE   12   53
     clus
vv    AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  NO                             1                             12
  YES                           12                             53
D14V8, continuous
D14V9, continuous

Clustering(15) Variable = AMP PEAK 15(15Q26.1) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(15Q26.1) MUTATED   12  3
  AMP PEAK 15(15Q26.1) WILD-TYPE 53  8
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                            15                             61 
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                             3                              8 
$`AMP PEAK 15(15Q26.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1MI TCGA-C5-A1MK TCGA-DR-A0ZL TCGA-DS-A0VL 
       49.48       177.04        35.61         2.43        87.75         2.66 
TCGA-EA-A3HQ TCGA-EA-A50E TCGA-EX-A3L1 TCGA-EX-A69L TCGA-FU-A23L TCGA-HM-A3JK 
        1.74         0.26         6.94         4.44         1.22        20.78 
TCGA-IR-A3LA TCGA-LP-A4AU TCGA-MY-A5BE 
      124.27         0.10         0.07 

$`AMP PEAK 15(15Q26.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN 
       40.93        78.31        58.88        36.76        69.93        95.08 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.02         6.84         0.26         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5ZD 
       14.47        14.50         1.78         0.30         0.33         0.69 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG 
       20.35         7.92        14.70         6.08         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.07         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.79         3.48         1.35         1.02        25.41        21.67 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
       14.93       147.35        66.81       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        26.56        36.36         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.03        29.72         4.34         3.72         3.39         3.68 
TCGA-Q1-A6DW 
        5.72 

  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                        177.04                         147.35 
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                          4.44                           6.08 
[1] "0.1 - 177.0 (4.4)" "0.0 - 147.3 (6.1)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(15Q26.1) MUTATED"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(15Q26.1) MUTATED"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(15Q26.1) MUTATED"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 15(15Q26.1) WILD-TYPE"   "AMP PEAK 15(15Q26.1) MUTATED" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 15(15Q26.1) MUTATED" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
[1] "hr=" "1.4"
D15V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 15(15Q26.1) MUTATED    7        7
  AMP PEAK 15(15Q26.1) WILD-TYPE 42       16
D15V3, multiclass
          clus
vv         AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  T1                                  7                             42
  T2+T3+T4                            7                             16
D15V4, binary
                                cls
clus                              0  1
  AMP PEAK 15(15Q26.1) MUTATED    9  5
  AMP PEAK 15(15Q26.1) WILD-TYPE 40 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(15Q26.1) MUTATED      9    5
  AMP PEAK 15(15Q26.1) WILD-TYPE   40   16
   clus
vv  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  0                            9                             40
  1                            5                             16
                                vv
clus                             M0 M1 MX
  AMP PEAK 15(15Q26.1) MUTATED   10  0  4
  AMP PEAK 15(15Q26.1) WILD-TYPE 35  2 22
D15V5, multiclass
    clus
vv   AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  M0                           10                             35
  M1                            0                              2
  MX                            4                             22
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 15(15Q26.1) MUTATED                                 15
  AMP PEAK 15(15Q26.1) WILD-TYPE                               51
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 15(15Q26.1) MUTATED                                               0
  AMP PEAK 15(15Q26.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 15(15Q26.1) MUTATED                                     0
  AMP PEAK 15(15Q26.1) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 15(15Q26.1) MUTATED                                           1
  AMP PEAK 15(15Q26.1) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 15(15Q26.1) MUTATED                                              0
  AMP PEAK 15(15Q26.1) WILD-TYPE                                            2
D15V6, multiclass
D15V7, binary
                                cls
clus                              0  1
  AMP PEAK 15(15Q26.1) MUTATED    3 13
  AMP PEAK 15(15Q26.1) WILD-TYPE 10 52
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(15Q26.1) MUTATED      3   13
  AMP PEAK 15(15Q26.1) WILD-TYPE   10   52
     clus
vv    AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  NO                             3                             10
  YES                           13                             52
D15V8, continuous
[1] "Remove cluster labels:"       "AMP PEAK 15(15Q26.1) MUTATED"
clus
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                             2                             19 
                    TCGA-C5-A1BI                     TCGA-C5-A1BN 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MN 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A5RQ 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TQ                     TCGA-FU-A3WB 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-HM-A4S6 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3L7                     TCGA-IR-A3LB 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-MU-A5YI 
"AMP PEAK 15(15Q26.1) WILD-TYPE" "AMP PEAK 15(15Q26.1) WILD-TYPE" 
                    TCGA-Q1-A6DW 
"AMP PEAK 15(15Q26.1) WILD-TYPE" 
D15V9, continuous

Clustering(16) Variable = AMP PEAK 16(16P13.13) MUTATION ANALYSIS
D16V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 16(16P13.13) MUTATED   12  1
  AMP PEAK 16(16P13.13) WILD-TYPE 53 10
  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                             13                              63 
  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                              1                              10 
$`AMP PEAK 16(16P13.13) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A439 TCGA-FU-A23L 
       30.41        35.61         6.02         1.74        14.50         1.22 
TCGA-FU-A3EO TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A40J TCGA-HM-A3JK 
        2.17         1.45         1.58         1.48         1.35        20.78 
TCGA-IR-A3LI 
       81.96 

$`AMP PEAK 16(16P13.13) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        11.44        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       36.76         2.66        69.93        95.08         6.84         0.26 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S 
        1.32         0.82         0.62        14.47         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.33         0.26         0.69        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY 
       14.70         4.44         6.08         1.22         0.99         0.07 
TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.02         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       14.93       147.35       124.27        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       78.67        26.56        36.36         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.39         3.68         5.72 

  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                           1.22                            0.03 
  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                          81.96                          177.04 
  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE 
                           2.17                            6.84 
[1] "1.2 - 82.0 (2.2)"  "0.0 - 177.0 (6.8)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 16(16P13.13) MUTATED"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 16(16P13.13) MUTATED"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 16(16P13.13) MUTATED"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "AMP PEAK 16(16P13.13) MUTATED" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 16(16P13.13) WILD-TYPE"   "AMP PEAK 16(16P13.13) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 16(16P13.13) WILD-TYPE" "AMP PEAK 16(16P13.13) WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 16(16P13.13) MUTATED    4        9
  AMP PEAK 16(16P13.13) WILD-TYPE 45       14
D16V3, multiclass
          clus
vv         AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE
  T1                                   4                              45
  T2+T3+T4                             9                              14
D16V4, binary
                                 cls
clus                               0  1
  AMP PEAK 16(16P13.13) MUTATED    6  7
  AMP PEAK 16(16P13.13) WILD-TYPE 43 14
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 16(16P13.13) MUTATED      6    7
  AMP PEAK 16(16P13.13) WILD-TYPE   43   14
   clus
vv  AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE
  0                             6                              43
  1                             7                              14
                                 vv
clus                              M0 M1 MX
  AMP PEAK 16(16P13.13) MUTATED    6  1  6
  AMP PEAK 16(16P13.13) WILD-TYPE 39  1 20
D16V5, multiclass
    clus
vv   AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE
  M0                             6                              39
  M1                             1                               1
  MX                             6                              20
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 16(16P13.13) MUTATED                                 11
  AMP PEAK 16(16P13.13) WILD-TYPE                               55
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 16(16P13.13) MUTATED                                               0
  AMP PEAK 16(16P13.13) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 16(16P13.13) MUTATED                                     3
  AMP PEAK 16(16P13.13) WILD-TYPE                                   5
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 16(16P13.13) MUTATED                                           0
  AMP PEAK 16(16P13.13) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 16(16P13.13) MUTATED                                              0
  AMP PEAK 16(16P13.13) WILD-TYPE                                            2
D16V6, multiclass
D16V7, binary
                                 cls
clus                               0  1
  AMP PEAK 16(16P13.13) MUTATED    3 11
  AMP PEAK 16(16P13.13) WILD-TYPE 10 54
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 16(16P13.13) MUTATED      3   11
  AMP PEAK 16(16P13.13) WILD-TYPE   10   54
     clus
vv    AMP PEAK 16(16P13.13) MUTATED AMP PEAK 16(16P13.13) WILD-TYPE
  NO                              3                              10
  YES                            11                              54
D16V8, continuous
D16V9, continuous

Clustering(17) Variable = AMP PEAK 17(17Q12) MUTATION ANALYSIS
D17V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 17(17Q12) MUTATED    8  1
  AMP PEAK 17(17Q12) WILD-TYPE 57 10
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                           9                           67 
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                           1                           10 
$`AMP PEAK 17(17Q12) MUTATED`
TCGA-C5-A1MI TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EX-A3L1 TCGA-EX-A69M 
       35.61        69.93         6.02         1.32         6.94         6.08 
TCGA-FU-A40J TCGA-LP-A4AU TCGA-MU-A51Y 
        1.35         0.10        13.87 

$`AMP PEAK 17(17Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       67.46        53.13         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       58.88        36.76         2.66        95.08         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        1.74         0.82         0.62        14.47        14.50         1.78 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.30         0.33         0.26         0.69        20.35         7.92 
TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
       14.70         4.44         1.22         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.07         1.02         1.45         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        3.48         1.02        25.41        21.67        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.35       124.27        66.81       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A5YI 
       81.96        26.56        36.36         0.89         0.07         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
       29.72         0.07         4.34         3.72         3.39         3.68 
TCGA-Q1-A6DW 
        5.72 

  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                        0.10                         0.03 
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                       69.93                       177.04 
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                        6.08                         5.72 
[1] "0.1 - 69.9 (6.1)"  "0.0 - 177.0 (5.7)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "AMP PEAK 17(17Q12) MUTATED" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"AMP PEAK 17(17Q12) WILD-TYPE"   "AMP PEAK 17(17Q12) MUTATED" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
                              vv
clus                           T1 T2+T3+T4
  AMP PEAK 17(17Q12) MUTATED    3        6
  AMP PEAK 17(17Q12) WILD-TYPE 46       17
D17V3, multiclass
          clus
vv         AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  T1                                3                           46
  T2+T3+T4                          6                           17
D17V4, binary
                              cls
clus                            0  1
  AMP PEAK 17(17Q12) MUTATED    4  5
  AMP PEAK 17(17Q12) WILD-TYPE 45 16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 17(17Q12) MUTATED      4    5
  AMP PEAK 17(17Q12) WILD-TYPE   45   16
   clus
vv  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  0                          4                           45
  1                          5                           16
                              vv
clus                           M0 M1 MX
  AMP PEAK 17(17Q12) MUTATED    7  0  2
  AMP PEAK 17(17Q12) WILD-TYPE 38  2 24
D17V5, multiclass
    clus
vv   AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  M0                          7                           38
  M1                          0                            2
  MX                          2                           24
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 17(17Q12) MUTATED                                  8
  AMP PEAK 17(17Q12) WILD-TYPE                               58
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 17(17Q12) MUTATED                                               0
  AMP PEAK 17(17Q12) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 17(17Q12) MUTATED                                     1
  AMP PEAK 17(17Q12) WILD-TYPE                                   7
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 17(17Q12) MUTATED                                           0
  AMP PEAK 17(17Q12) WILD-TYPE                                         1
                              vv
clus                           MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 17(17Q12) MUTATED                                              0
  AMP PEAK 17(17Q12) WILD-TYPE                                            2
D17V6, multiclass
D17V7, binary
                              cls
clus                            0  1
  AMP PEAK 17(17Q12) MUTATED    2  7
  AMP PEAK 17(17Q12) WILD-TYPE 11 58
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 17(17Q12) MUTATED      2    7
  AMP PEAK 17(17Q12) WILD-TYPE   11   58
     clus
vv    AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  NO                           2                           11
  YES                          7                           58
D17V8, continuous
[1] "Remove cluster labels:"     "AMP PEAK 17(17Q12) MUTATED"
clus
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                           1                           20 
                  TCGA-BI-A0VR                   TCGA-C5-A1BI 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1MF 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-DR-A0ZM 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EX-A1H5 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3TQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LB                   TCGA-IR-A3LH 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-Q1-A6DW 
"AMP PEAK 17(17Q12) WILD-TYPE" "AMP PEAK 17(17Q12) WILD-TYPE" 
D17V9, continuous

Clustering(18) Variable = AMP PEAK 18(17Q25.1) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(17Q25.1) MUTATED   17  2
  AMP PEAK 18(17Q25.1) WILD-TYPE 48  9
  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                            19                             57 
  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                             2                              9 
$`AMP PEAK 18(17Q25.1) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       53.13        35.61        36.76         6.02         1.74         1.32 
TCGA-EA-A439 TCGA-EX-A3L1 TCGA-EX-A69M TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ 
       14.50         6.94         6.08         0.07         1.45         1.58 
TCGA-FU-A40J TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-LP-A4AU TCGA-LP-A4AW 
        1.35        14.93       147.35       117.40         0.10         0.89 
TCGA-MU-A51Y 
       13.87 

$`AMP PEAK 18(17Q25.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       67.46         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HS 
        2.66        69.93        95.08         6.84         0.26         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.62        14.47         1.78         0.30         0.33         0.26 
TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K 
        0.69        20.35         7.92        14.70         4.44         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3WB 
        1.22         0.99         2.17         1.02         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3LA 
        3.48         1.02        25.41        21.67        20.78       124.27 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81        96.92        78.67        81.96        26.56        36.36 
TCGA-LP-A4AX TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
        0.07         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.39         3.68         5.72 

  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                        147.35                         177.04 
  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE 
                          6.08                           5.72 
[1] "0.1 - 147.3 (6.1)" "0.0 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "AMP PEAK 18(17Q25.1) MUTATED" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 18(17Q25.1) MUTATED"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"AMP PEAK 18(17Q25.1) WILD-TYPE"   "AMP PEAK 18(17Q25.1) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"AMP PEAK 18(17Q25.1) WILD-TYPE" "AMP PEAK 18(17Q25.1) WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 18(17Q25.1) MUTATED   10        9
  AMP PEAK 18(17Q25.1) WILD-TYPE 39       14
D18V3, multiclass
          clus
vv         AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE
  T1                                 10                             39
  T2+T3+T4                            9                             14
D18V4, binary
                                cls
clus                              0  1
  AMP PEAK 18(17Q25.1) MUTATED   10  9
  AMP PEAK 18(17Q25.1) WILD-TYPE 39 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(17Q25.1) MUTATED     10    9
  AMP PEAK 18(17Q25.1) WILD-TYPE   39   12
   clus
vv  AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE
  0                           10                             39
  1                            9                             12
                                vv
clus                             M0 M1 MX
  AMP PEAK 18(17Q25.1) MUTATED   12  0  7
  AMP PEAK 18(17Q25.1) WILD-TYPE 33  2 19
D18V5, multiclass
    clus
vv   AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE
  M0                           12                             33
  M1                            0                              2
  MX                            7                             19
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 18(17Q25.1) MUTATED                                 19
  AMP PEAK 18(17Q25.1) WILD-TYPE                               47
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 18(17Q25.1) MUTATED                                               0
  AMP PEAK 18(17Q25.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 18(17Q25.1) MUTATED                                     1
  AMP PEAK 18(17Q25.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 18(17Q25.1) MUTATED                                           0
  AMP PEAK 18(17Q25.1) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 18(17Q25.1) MUTATED                                              0
  AMP PEAK 18(17Q25.1) WILD-TYPE                                            2
D18V6, multiclass
D18V7, binary
                                cls
clus                              0  1
  AMP PEAK 18(17Q25.1) MUTATED    3 17
  AMP PEAK 18(17Q25.1) WILD-TYPE 10 48
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(17Q25.1) MUTATED      3   17
  AMP PEAK 18(17Q25.1) WILD-TYPE   10   48
     clus
vv    AMP PEAK 18(17Q25.1) MUTATED AMP PEAK 18(17Q25.1) WILD-TYPE
  NO                             3                             10
  YES                           17                             48
D18V8, continuous
D18V9, continuous

Clustering(19) Variable = AMP PEAK 19(19Q13.13) MUTATION ANALYSIS
D19V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 19(19Q13.13) MUTATED   16  7
  AMP PEAK 19(19Q13.13) WILD-TYPE 49  4
  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                             23                              53 
  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                              7                               4 
$`AMP PEAK 19(19Q13.13) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY 
       11.44         5.46        53.13        35.61         2.43        78.31 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        2.66         6.02         1.32        14.47        14.50         1.78 
TCGA-EA-A50E TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.26         1.22         1.45         1.35        21.67        20.78 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A6DT 
       26.56        36.36        29.72         0.07         3.39 

$`AMP PEAK 19(19Q13.13) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MN 
       49.48        30.41        36.56       177.04        67.46        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       87.75        58.88        36.76        69.93        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        0.26         1.74         0.82         0.62         0.30         0.33 
TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.69        20.35         7.92         6.94        14.70         4.44 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.08         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.58         1.48         0.79         3.48         1.02        25.41 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       14.93       147.35       124.27        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       78.67        81.96         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.03         4.34         3.72         3.68         5.72 

  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                           0.07                            0.03 
  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                          78.31                          177.04 
  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE 
                           6.02                            6.08 
[1] "0.1 - 78.3 (6.0)"  "0.0 - 177.0 (6.1)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 19(19Q13.13) MUTATED"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 19(19Q13.13) MUTATED" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 19(19Q13.13) WILD-TYPE"   "AMP PEAK 19(19Q13.13) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 19(19Q13.13) WILD-TYPE" "AMP PEAK 19(19Q13.13) WILD-TYPE" 
[1] "hr=" "7.6"
D19V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 19(19Q13.13) MUTATED   12        8
  AMP PEAK 19(19Q13.13) WILD-TYPE 37       15
D19V3, multiclass
          clus
vv         AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE
  T1                                  12                              37
  T2+T3+T4                             8                              15
D19V4, binary
                                 cls
clus                               0  1
  AMP PEAK 19(19Q13.13) MUTATED   12  8
  AMP PEAK 19(19Q13.13) WILD-TYPE 37 13
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 19(19Q13.13) MUTATED     12    8
  AMP PEAK 19(19Q13.13) WILD-TYPE   37   13
   clus
vv  AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE
  0                            12                              37
  1                             8                              13
                                 vv
clus                              M0 M1 MX
  AMP PEAK 19(19Q13.13) MUTATED   12  0  9
  AMP PEAK 19(19Q13.13) WILD-TYPE 33  2 17
D19V5, multiclass
    clus
vv   AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE
  M0                            12                              33
  M1                             0                               2
  MX                             9                              17
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 19(19Q13.13) MUTATED                                 22
  AMP PEAK 19(19Q13.13) WILD-TYPE                               44
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 19(19Q13.13) MUTATED                                               0
  AMP PEAK 19(19Q13.13) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 19(19Q13.13) MUTATED                                     1
  AMP PEAK 19(19Q13.13) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 19(19Q13.13) MUTATED                                           0
  AMP PEAK 19(19Q13.13) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 19(19Q13.13) MUTATED                                              0
  AMP PEAK 19(19Q13.13) WILD-TYPE                                            2
D19V6, multiclass
D19V7, binary
                                 cls
clus                               0  1
  AMP PEAK 19(19Q13.13) MUTATED    9 14
  AMP PEAK 19(19Q13.13) WILD-TYPE  4 51
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 19(19Q13.13) MUTATED      9   14
  AMP PEAK 19(19Q13.13) WILD-TYPE    4   51
     clus
vv    AMP PEAK 19(19Q13.13) MUTATED AMP PEAK 19(19Q13.13) WILD-TYPE
  NO                              9                               4
  YES                            14                              51
D19V8, continuous
D19V9, continuous

Clustering(20) Variable = AMP PEAK 20(19Q13.32) MUTATION ANALYSIS
D20V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 20(19Q13.32) MUTATED   16  6
  AMP PEAK 20(19Q13.32) WILD-TYPE 49  5
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                             22                              54 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                              6                               5 
$`AMP PEAK 20(19Q13.32) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY 
       11.44         5.46        53.13        35.61         2.43        78.31 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        2.66         6.02         1.32        14.47        14.50         1.78 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 
        1.22         1.45         1.35        21.67        20.78       147.35 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-MY-A5BD TCGA-MY-A5BE 
       26.56        36.36        29.72         0.07 

$`AMP PEAK 20(19Q13.32) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MN 
       49.48        30.41        36.56       177.04        67.46        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       87.75        58.88        36.76        69.93        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        0.26         1.74         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.26         0.69        20.35         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        4.44         6.08         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.02         1.58         1.48         0.79         3.48         1.02 
TCGA-HG-A2PA TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       25.41        14.93       124.27        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       78.67        81.96         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.03         4.34         3.72         3.39         3.68         5.72 

  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                           0.07                            0.03 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                         147.35                          177.04 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                         12.955                           5.080 
[1] "0.1 - 147.3 (13.0)" "0.0 - 177.0 (5.1)" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
[1] "hr=" "3.7"
D20V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 20(19Q13.32) MUTATED   13        7
  AMP PEAK 20(19Q13.32) WILD-TYPE 36       16
D20V3, multiclass
          clus
vv         AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  T1                                  13                              36
  T2+T3+T4                             7                              16
D20V4, binary
                                 cls
clus                               0  1
  AMP PEAK 20(19Q13.32) MUTATED   13  7
  AMP PEAK 20(19Q13.32) WILD-TYPE 36 14
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.32) MUTATED     13    7
  AMP PEAK 20(19Q13.32) WILD-TYPE   36   14
   clus
vv  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  0                            13                              36
  1                             7                              14
                                 vv
clus                              M0 M1 MX
  AMP PEAK 20(19Q13.32) MUTATED   12  0  8
  AMP PEAK 20(19Q13.32) WILD-TYPE 33  2 18
D20V5, multiclass
    clus
vv   AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  M0                            12                              33
  M1                             0                               2
  MX                             8                              18
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 20(19Q13.32) MUTATED                                 21
  AMP PEAK 20(19Q13.32) WILD-TYPE                               45
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 20(19Q13.32) MUTATED                                               0
  AMP PEAK 20(19Q13.32) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 20(19Q13.32) MUTATED                                     1
  AMP PEAK 20(19Q13.32) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 20(19Q13.32) MUTATED                                           0
  AMP PEAK 20(19Q13.32) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 20(19Q13.32) MUTATED                                              0
  AMP PEAK 20(19Q13.32) WILD-TYPE                                            2
D20V6, multiclass
D20V7, binary
                                 cls
clus                               0  1
  AMP PEAK 20(19Q13.32) MUTATED    9 13
  AMP PEAK 20(19Q13.32) WILD-TYPE  4 52
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.32) MUTATED      9   13
  AMP PEAK 20(19Q13.32) WILD-TYPE    4   52
     clus
vv    AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  NO                              9                               4
  YES                            13                              52
D20V8, continuous
D20V9, continuous

Clustering(21) Variable = AMP PEAK 21(20Q11.21) MUTATION ANALYSIS
D21V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 21(20Q11.21) MUTATED   24  5
  AMP PEAK 21(20Q11.21) WILD-TYPE 41  6
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             29                              47 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                              5                               6 
$`AMP PEAK 21(20Q11.21) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK 
       49.48        30.41        35.61         2.43        40.93        36.76 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 
        6.02         0.26         1.74         1.32         0.82        14.50 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A40J 
        1.22         1.22         2.17         0.07         1.45         1.35 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-IR-A3LH 
       25.41        21.67        20.78       147.35        96.92        78.67 
TCGA-LP-A4AX TCGA-MU-A5YI TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DW 
        0.07         0.03         3.72         3.39         5.72 

$`AMP PEAK 21(20Q11.21) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       11.44        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       78.31        87.75        58.88         2.66        69.93        95.08 
TCGA-DS-A5RQ TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        6.84         0.62        14.47         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.26         0.69        20.35         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A2QG TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        4.44         6.08         0.99         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB 
        0.79         3.48         1.02        14.93       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
      117.40        81.96        26.56        36.36         0.10         0.89 
TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DV 
       13.87        29.72         0.07         4.34         3.68 

  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           0.03                            0.07 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                         147.35                          177.04 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           3.72                            6.94 
[1] "0.0 - 147.3 (3.7)" "0.1 - 177.0 (6.9)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
[1] "hr=" "1.7"
D21V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 21(20Q11.21) MUTATED   16       10
  AMP PEAK 21(20Q11.21) WILD-TYPE 33       13
D21V3, multiclass
          clus
vv         AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  T1                                  16                              33
  T2+T3+T4                            10                              13
D21V4, binary
                                 cls
clus                               0  1
  AMP PEAK 21(20Q11.21) MUTATED   15 10
  AMP PEAK 21(20Q11.21) WILD-TYPE 34 11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED     15   10
  AMP PEAK 21(20Q11.21) WILD-TYPE   34   11
   clus
vv  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  0                            15                              34
  1                            10                              11
                                 vv
clus                              M0 M1 MX
  AMP PEAK 21(20Q11.21) MUTATED   16  0 12
  AMP PEAK 21(20Q11.21) WILD-TYPE 29  2 14
D21V5, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                            16                              29
  M1                             0                               2
  MX                            12                              14
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                                 27
  AMP PEAK 21(20Q11.21) WILD-TYPE                               39
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 21(20Q11.21) MUTATED                                               1
  AMP PEAK 21(20Q11.21) WILD-TYPE                                             0
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                                     2
  AMP PEAK 21(20Q11.21) WILD-TYPE                                   6
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 21(20Q11.21) MUTATED                                           0
  AMP PEAK 21(20Q11.21) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 21(20Q11.21) MUTATED                                              1
  AMP PEAK 21(20Q11.21) WILD-TYPE                                            1
D21V6, multiclass
D21V7, binary
                                 cls
clus                               0  1
  AMP PEAK 21(20Q11.21) MUTATED    5 26
  AMP PEAK 21(20Q11.21) WILD-TYPE  8 39
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED      5   26
  AMP PEAK 21(20Q11.21) WILD-TYPE    8   39
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                              5                               8
  YES                            26                              39
D21V8, continuous
D21V9, continuous

Clustering(22) Variable = AMP PEAK 22(XQ28) MUTATION ANALYSIS
D22V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 22(XQ28) MUTATED   13  1
  AMP PEAK 22(XQ28) WILD-TYPE 52 10
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         14                          62 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          1                          10 
$`AMP PEAK 22(XQ28) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-FU-A23L 
       30.41       177.04        53.13         6.02         1.74         1.22 
TCGA-FU-A3NI TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LL TCGA-MY-A5BD 
        1.45       124.27        66.81        78.67        36.36        29.72 
TCGA-MY-A5BF TCGA-Q1-A6DV 
        4.34         3.68 

$`AMP PEAK 22(XQ28) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        11.44        36.56         5.46        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR 
        2.66        69.93        95.08         6.84         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62        14.47        14.50         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.33         0.26         0.69        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
       14.70         4.44         6.08         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.58         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.02        25.41        21.67        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-LP-A4AU 
      147.35       117.40        96.92        81.96        26.56         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BE TCGA-Q1-A5R1 
        0.89         0.07        13.87         0.03         0.07         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DW 
        3.39         5.72 

  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                       1.22                        0.03 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                     177.04                      147.35 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                     30.065                       5.590 
[1] "1.2 - 177.0 (30.1)" "0.0 - 147.3 (5.6)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK 22(XQ28) MUTATED"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK 22(XQ28) MUTATED"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK 22(XQ28) MUTATED"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
[1] "hr=" "3.7"
D22V2, continuous
                             vv
clus                          T1 T2+T3+T4
  AMP PEAK 22(XQ28) MUTATED    8        6
  AMP PEAK 22(XQ28) WILD-TYPE 41       17
D22V3, multiclass
          clus
vv         AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  T1                               8                          41
  T2+T3+T4                         6                          17
D22V4, binary
                             cls
clus                           0  1
  AMP PEAK 22(XQ28) MUTATED   12  2
  AMP PEAK 22(XQ28) WILD-TYPE 37 19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED     12    2
  AMP PEAK 22(XQ28) WILD-TYPE   37   19
   clus
vv  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  0                        12                          37
  1                         2                          19
                             vv
clus                          M0 M1 MX
  AMP PEAK 22(XQ28) MUTATED    9  0  5
  AMP PEAK 22(XQ28) WILD-TYPE 36  2 21
D22V5, multiclass
    clus
vv   AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  M0                         9                          36
  M1                         0                           2
  MX                         5                          21
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 22(XQ28) MUTATED                                 11
  AMP PEAK 22(XQ28) WILD-TYPE                               55
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 22(XQ28) MUTATED                                               0
  AMP PEAK 22(XQ28) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 22(XQ28) MUTATED                                     1
  AMP PEAK 22(XQ28) WILD-TYPE                                   7
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 22(XQ28) MUTATED                                           1
  AMP PEAK 22(XQ28) WILD-TYPE                                         0
                             vv
clus                          MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  AMP PEAK 22(XQ28) MUTATED                                              1
  AMP PEAK 22(XQ28) WILD-TYPE                                            1
D22V6, multiclass
D22V7, binary
                             cls
clus                           0  1
  AMP PEAK 22(XQ28) MUTATED    2 12
  AMP PEAK 22(XQ28) WILD-TYPE 11 53
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED      2   12
  AMP PEAK 22(XQ28) WILD-TYPE   11   53
     clus
vv    AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  NO                          2                          11
  YES                        12                          53
D22V8, continuous
D22V9, continuous

Clustering(23) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.23) MUTATED    9  2
  DEL PEAK  1(1P36.23) WILD-TYPE 56  9
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            11                             65 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                             2                              9 
$`DEL PEAK  1(1P36.23) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VM TCGA-EA-A3HR TCGA-EA-A439 
       11.44        53.13        35.61        69.93         1.32        14.50 
TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A3EO TCGA-IR-A3LF TCGA-Q1-A6DT 
       14.70         4.44         2.17        96.92         3.39 

$`DEL PEAK  1(1P36.23) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        95.08         6.02         6.84         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.82         0.62        14.47         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A69M 
        0.26         0.69        20.35         7.92         6.94         6.08 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         1.22         0.99         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.79         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        21.67        20.78        14.93       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81       117.40        78.67        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.72         3.68         5.72 

  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                          1.32                           0.03 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                         96.92                         177.04 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                         14.50                           5.72 
[1] "1.3 - 96.9 (14.5)" "0.0 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK  1(1P36.23) MUTATED    7        3
  DEL PEAK  1(1P36.23) WILD-TYPE 42       20
D23V3, multiclass
          clus
vv         DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  T1                                  7                             42
  T2+T3+T4                            3                             20
D23V4, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    6  3
  DEL PEAK  1(1P36.23) WILD-TYPE 43 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      6    3
  DEL PEAK  1(1P36.23) WILD-TYPE   43   18
   clus
vv  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  0                            6                             43
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.23) MUTATED    6  1  4
  DEL PEAK  1(1P36.23) WILD-TYPE 39  1 22
D23V5, multiclass
    clus
vv   DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  M0                            6                             39
  M1                            1                              1
  MX                            4                             22
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  1(1P36.23) MUTATED                                  9
  DEL PEAK  1(1P36.23) WILD-TYPE                               57
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  1(1P36.23) MUTATED                                               1
  DEL PEAK  1(1P36.23) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  1(1P36.23) MUTATED                                     2
  DEL PEAK  1(1P36.23) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  1(1P36.23) MUTATED                                           0
  DEL PEAK  1(1P36.23) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  1(1P36.23) MUTATED                                              0
  DEL PEAK  1(1P36.23) WILD-TYPE                                            2
D23V6, multiclass
D23V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    3  9
  DEL PEAK  1(1P36.23) WILD-TYPE 10 56
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      3    9
  DEL PEAK  1(1P36.23) WILD-TYPE   10   56
     clus
vv    DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  NO                             3                             10
  YES                            9                             56
D23V8, continuous
D23V9, continuous

Clustering(24) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2Q22.1) MUTATED   10  2
  DEL PEAK  2(2Q22.1) WILD-TYPE 55  9
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           12                            64 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            2                             9 
$`DEL PEAK  2(2Q22.1) MUTATED`
TCGA-C5-A1BI TCGA-C5-A1BN TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A44S 
       36.56         5.46        95.08         6.02         1.32         0.30 
TCGA-EX-A69L TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LH TCGA-MY-A5BF TCGA-Q1-A5R1 
        4.44        21.67       147.35        78.67         4.34         3.72 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        11.44       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       36.76         2.66        69.93         6.84         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA 
        0.82         0.62        14.47        14.50         1.78         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.26         0.69        20.35         7.92         6.94        14.70 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.08         1.22         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA 
        1.35         1.02        25.41        20.78        14.93       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81       117.40        96.92        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         3.39         3.68         5.72 

  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         0.30                          0.03 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         5.74                          6.46 
[1] "0.3 - 147.3 (5.7)" "0.0 - 177.0 (6.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  2(2Q22.1) MUTATED    6        5
  DEL PEAK  2(2Q22.1) WILD-TYPE 43       18
D24V3, multiclass
          clus
vv         DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  T1                                 6                            43
  T2+T3+T4                           5                            18
D24V4, binary
                               cls
clus                             0  1
  DEL PEAK  2(2Q22.1) MUTATED    7  4
  DEL PEAK  2(2Q22.1) WILD-TYPE 42 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      7    4
  DEL PEAK  2(2Q22.1) WILD-TYPE   42   17
   clus
vv  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  0                           7                            42
  1                           4                            17
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(2Q22.1) MUTATED    8  0  3
  DEL PEAK  2(2Q22.1) WILD-TYPE 37  2 23
D24V5, multiclass
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  M0                           8                            37
  M1                           0                             2
  MX                           3                            23
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                                 11
  DEL PEAK  2(2Q22.1) WILD-TYPE                               55
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  2(2Q22.1) MUTATED                                               0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                                     0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  2(2Q22.1) MUTATED                                           0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  2(2Q22.1) MUTATED                                              1
  DEL PEAK  2(2Q22.1) WILD-TYPE                                            1
D24V6, multiclass
D24V7, binary
                               cls
clus                             0  1
  DEL PEAK  2(2Q22.1) MUTATED    5  7
  DEL PEAK  2(2Q22.1) WILD-TYPE  8 58
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      5    7
  DEL PEAK  2(2Q22.1) WILD-TYPE    8   58
     clus
vv    DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  NO                            5                             8
  YES                           7                            58
D24V8, continuous
D24V9, continuous

Clustering(25) Variable = DEL PEAK  3(2Q37.1) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.1) MUTATED   24  5
  DEL PEAK  3(2Q37.1) WILD-TYPE 41  6
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           29                            47 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                            5                             6 
$`DEL PEAK  3(2Q37.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY 
       30.41        11.44        36.56       177.04         5.46        78.31 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR 
       87.75         2.66        69.93        95.08         0.26         1.32 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A69L TCGA-FU-A2QG 
        1.78         0.30         0.26         7.92         4.44         0.99 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A40J TCGA-HM-A3JJ TCGA-IR-A3LK 
        0.07         1.45         0.79         1.35        21.67        26.56 
TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT 
       36.36         0.07         4.34         3.72         3.39 

$`DEL PEAK  3(2Q37.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN 
       49.48        67.46        53.13        35.61         2.43        40.93 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS 
       58.88        36.76         6.02         6.84         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A5ZD TCGA-EX-A1H5 
        0.62        14.47        14.50         0.33         0.69        20.35 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO 
        6.94        14.70         6.08         1.22         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.02         1.58         1.48         3.48         1.02        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78        14.93       147.35       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y 
       96.92        78.67        81.96         0.10         0.89        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.03        29.72         0.07         3.68         5.72 

  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                       177.04                        147.35 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                         4.34                          6.94 
[1] "0.1 - 177.0 (4.3)" "0.0 - 147.3 (6.9)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
[1] "hr=" "1.6"
D25V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  3(2Q37.1) MUTATED   22        6
  DEL PEAK  3(2Q37.1) WILD-TYPE 27       17
D25V3, multiclass
          clus
vv         DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  T1                                22                            27
  T2+T3+T4                           6                            17
D25V4, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q37.1) MUTATED   19  9
  DEL PEAK  3(2Q37.1) WILD-TYPE 30 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED     19    9
  DEL PEAK  3(2Q37.1) WILD-TYPE   30   12
   clus
vv  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  0                          19                            30
  1                           9                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(2Q37.1) MUTATED   17  0 11
  DEL PEAK  3(2Q37.1) WILD-TYPE 28  2 15
D25V5, multiclass
    clus
vv   DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  M0                          17                            28
  M1                           0                             2
  MX                          11                            15
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                                 28
  DEL PEAK  3(2Q37.1) WILD-TYPE                               38
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  3(2Q37.1) MUTATED                                               0
  DEL PEAK  3(2Q37.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                                     2
  DEL PEAK  3(2Q37.1) WILD-TYPE                                   6
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  3(2Q37.1) MUTATED                                           0
  DEL PEAK  3(2Q37.1) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  3(2Q37.1) MUTATED                                              1
  DEL PEAK  3(2Q37.1) WILD-TYPE                                            1
D25V6, multiclass
D25V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q37.1) MUTATED    6 25
  DEL PEAK  3(2Q37.1) WILD-TYPE  7 40
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED      6   25
  DEL PEAK  3(2Q37.1) WILD-TYPE    7   40
     clus
vv    DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  NO                            6                             7
  YES                          25                            40
D25V8, continuous
D25V9, continuous

Clustering(26) Variable = DEL PEAK  4(3P14.2) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P14.2) MUTATED   21  8
  DEL PEAK  4(3P14.2) WILD-TYPE 44  3
  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                           29                            47 
  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                            8                             3 
$`DEL PEAK  4(3P14.2) MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        11.44        36.56         5.46        53.13        35.61 
TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       40.93        87.75        36.76        69.93        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H5 
        0.26         0.82        14.50         0.30         0.26        20.35 
TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.22         0.07         1.45         3.48        25.41        21.67 
TCGA-IR-A3L7 TCGA-IR-A3LH TCGA-IR-A3LK TCGA-MU-A5YI TCGA-Q1-A6DT 
      147.35        78.67        26.56         0.03         3.39 

$`DEL PEAK  4(3P14.2) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM 
       30.41       177.04        67.46         2.43        78.31        58.88 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EA-A3Y4 
        2.66         6.02         1.74         1.32         0.62        14.47 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        1.78         0.33         0.69         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        4.44         6.08         1.22         0.99         2.17         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK 
        1.58         1.48         0.79         1.35         1.02        20.78 
TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI 
       14.93       124.27        66.81       117.40        96.92        81.96 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MY-A5BD 
       36.36         0.10         0.89         0.07        13.87        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.72         3.68         5.72 

  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                         0.03                          0.07 
  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE 
                        20.35                          4.34 
[1] "0.0 - 147.3 (20.4)" "0.1 - 177.0 (4.3)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  4(3P14.2) MUTATED"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P14.2) MUTATED"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  4(3P14.2) MUTATED"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P14.2) MUTATED"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  4(3P14.2) MUTATED"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P14.2) MUTATED"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
  "DEL PEAK  4(3P14.2) MUTATED" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  4(3P14.2) WILD-TYPE"   "DEL PEAK  4(3P14.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  4(3P14.2) WILD-TYPE" "DEL PEAK  4(3P14.2) WILD-TYPE" 
[1] "hr=" "3.1"
D26V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  4(3P14.2) MUTATED   20        7
  DEL PEAK  4(3P14.2) WILD-TYPE 29       16
D26V3, multiclass
          clus
vv         DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE
  T1                                20                            29
  T2+T3+T4                           7                            16
D26V4, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P14.2) MUTATED   14 12
  DEL PEAK  4(3P14.2) WILD-TYPE 35  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P14.2) MUTATED     14   12
  DEL PEAK  4(3P14.2) WILD-TYPE   35    9
   clus
vv  DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE
  0                          14                            35
  1                          12                             9
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(3P14.2) MUTATED   17  0 11
  DEL PEAK  4(3P14.2) WILD-TYPE 28  2 15
D26V5, multiclass
    clus
vv   DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE
  M0                          17                            28
  M1                           0                             2
  MX                          11                            15
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  4(3P14.2) MUTATED                                 31
  DEL PEAK  4(3P14.2) WILD-TYPE                               35
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  4(3P14.2) MUTATED                                               0
  DEL PEAK  4(3P14.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  4(3P14.2) MUTATED                                     0
  DEL PEAK  4(3P14.2) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  4(3P14.2) MUTATED                                           0
  DEL PEAK  4(3P14.2) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  4(3P14.2) MUTATED                                              0
  DEL PEAK  4(3P14.2) WILD-TYPE                                            2
D26V6, multiclass
D26V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P14.2) MUTATED    8 23
  DEL PEAK  4(3P14.2) WILD-TYPE  5 42
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P14.2) MUTATED      8   23
  DEL PEAK  4(3P14.2) WILD-TYPE    5   42
     clus
vv    DEL PEAK  4(3P14.2) MUTATED DEL PEAK  4(3P14.2) WILD-TYPE
  NO                            8                             5
  YES                          23                            42
D26V8, continuous
D26V9, continuous

Clustering(27) Variable = DEL PEAK  5(4Q22.1) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(4Q22.1) MUTATED   10  5
  DEL PEAK  5(4Q22.1) WILD-TYPE 55  6
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           15                            61 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                            5                             6 
$`DEL PEAK  5(4Q22.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-EA-A1QT 
       49.48        11.44         5.46        35.61        87.75         0.26 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3NI TCGA-HM-A3JJ 
       14.50         1.78        20.35         6.94         1.45        21.67 
TCGA-IR-A3LK TCGA-LP-A4AU TCGA-LP-A4AW 
       26.56         0.10         0.89 

$`DEL PEAK  5(4Q22.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       30.41        36.56       177.04        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       40.93        78.31        58.88        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       95.08         6.02         6.84         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
        0.62        14.47         0.30         0.33         0.26         0.69 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
        7.92        14.70         4.44         6.08         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        0.99         2.17         0.07         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK 
        0.79         3.48         1.35         1.02        25.41        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       14.93       147.35       124.27        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       78.67        81.96        36.36         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
       29.72         0.07         4.34         3.72         3.39         3.68 
TCGA-Q1-A6DW 
        5.72 

  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                        87.75                        177.04 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                        11.44                          5.72 
[1] "0.1 - 87.8 (11.4)" "0.0 - 177.0 (5.7)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
[1] "hr=" "4.6"
D27V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  5(4Q22.1) MUTATED    9        5
  DEL PEAK  5(4Q22.1) WILD-TYPE 40       18
D27V3, multiclass
          clus
vv         DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  T1                                 9                            40
  T2+T3+T4                           5                            18
D27V4, binary
                               cls
clus                             0  1
  DEL PEAK  5(4Q22.1) MUTATED    7  7
  DEL PEAK  5(4Q22.1) WILD-TYPE 42 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q22.1) MUTATED      7    7
  DEL PEAK  5(4Q22.1) WILD-TYPE   42   14
   clus
vv  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  0                           7                            42
  1                           7                            14
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(4Q22.1) MUTATED   10  0  4
  DEL PEAK  5(4Q22.1) WILD-TYPE 35  2 22
D27V5, multiclass
    clus
vv   DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  M0                          10                            35
  M1                           0                             2
  MX                           4                            22
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  5(4Q22.1) MUTATED                                 15
  DEL PEAK  5(4Q22.1) WILD-TYPE                               51
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  5(4Q22.1) MUTATED                                               0
  DEL PEAK  5(4Q22.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  5(4Q22.1) MUTATED                                     0
  DEL PEAK  5(4Q22.1) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  5(4Q22.1) MUTATED                                           0
  DEL PEAK  5(4Q22.1) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  5(4Q22.1) MUTATED                                              0
  DEL PEAK  5(4Q22.1) WILD-TYPE                                            2
D27V6, multiclass
D27V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(4Q22.1) MUTATED    5 10
  DEL PEAK  5(4Q22.1) WILD-TYPE  8 55
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q22.1) MUTATED      5   10
  DEL PEAK  5(4Q22.1) WILD-TYPE    8   55
     clus
vv    DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  NO                            5                             8
  YES                          10                            55
D27V8, continuous
D27V9, continuous

Clustering(28) Variable = DEL PEAK  6(4Q35.2) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q35.2) MUTATED   15  6
  DEL PEAK  6(4Q35.2) WILD-TYPE 50  5
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           21                            55 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                            6                             5 
$`DEL PEAK  6(4Q35.2) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN 
       30.41        11.44         5.46        67.46        35.61        40.93 
TCGA-DR-A0ZL TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
       87.75         6.84         0.26         0.62        14.50         1.78 
TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3NI TCGA-HM-A3JJ 
        0.30        20.35         6.94         0.99         1.45        21.67 
TCGA-IR-A3LA TCGA-LP-A4AU TCGA-LP-A4AW 
      124.27         0.10         0.89 

$`DEL PEAK  6(4Q35.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        36.56       177.04        53.13         2.43        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E 
        1.74         1.32         0.82        14.47         0.33         0.26 
TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        0.69         7.92        14.70         4.44         6.08         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         2.17         0.07         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK 
        0.79         3.48         1.35         1.02        25.41        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
       14.93       147.35        66.81       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       81.96        26.56        36.36         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
       29.72         0.07         4.34         3.72         3.39         3.68 
TCGA-Q1-A6DW 
        5.72 

  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                       124.27                        177.04 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                         6.94                          5.72 
[1] "0.1 - 124.3 (6.9)" "0.0 - 177.0 (5.7)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
[1] "hr=" "3.4"
D28V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  6(4Q35.2) MUTATED   14        5
  DEL PEAK  6(4Q35.2) WILD-TYPE 35       18
D28V3, multiclass
          clus
vv         DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  T1                                14                            35
  T2+T3+T4                           5                            18
D28V4, binary
                               cls
clus                             0  1
  DEL PEAK  6(4Q35.2) MUTATED   12  7
  DEL PEAK  6(4Q35.2) WILD-TYPE 37 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED     12    7
  DEL PEAK  6(4Q35.2) WILD-TYPE   37   14
   clus
vv  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  0                          12                            37
  1                           7                            14
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(4Q35.2) MUTATED   13  0  5
  DEL PEAK  6(4Q35.2) WILD-TYPE 32  2 21
D28V5, multiclass
    clus
vv   DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  M0                          13                            32
  M1                           0                             2
  MX                           5                            21
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  6(4Q35.2) MUTATED                                 20
  DEL PEAK  6(4Q35.2) WILD-TYPE                               46
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  6(4Q35.2) MUTATED                                               0
  DEL PEAK  6(4Q35.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  6(4Q35.2) MUTATED                                     0
  DEL PEAK  6(4Q35.2) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  6(4Q35.2) MUTATED                                           1
  DEL PEAK  6(4Q35.2) WILD-TYPE                                         0
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  6(4Q35.2) MUTATED                                              0
  DEL PEAK  6(4Q35.2) WILD-TYPE                                            2
D28V6, multiclass
D28V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(4Q35.2) MUTATED    5 16
  DEL PEAK  6(4Q35.2) WILD-TYPE  8 49
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED      5   16
  DEL PEAK  6(4Q35.2) WILD-TYPE    8   49
     clus
vv    DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  NO                            5                             8
  YES                          16                            49
D28V8, continuous
D28V9, continuous

Clustering(29) Variable = DEL PEAK  7(5Q15) MUTATION ANALYSIS
D29V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(5Q15) MUTATED   15  6
  DEL PEAK  7(5Q15) WILD-TYPE 50  5
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         21                          55 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          6                           5 
$`DEL PEAK  7(5Q15) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL 
       11.44       177.04         5.46        35.61        40.93        87.75 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
       36.76         2.66        69.93         0.26         1.32        14.50 
TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA 
       20.35         1.22         0.99         0.07         1.45        25.41 
TCGA-HM-A3JJ TCGA-LP-A4AW TCGA-Q1-A6DT 
       21.67         0.89         3.39 

$`DEL PEAK  7(5Q15) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        30.41        36.56        67.46        53.13         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ 
       78.31        58.88        95.08         6.02         6.84         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.82         0.62        14.47         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.26         0.69         7.92         6.94        14.70         4.44 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        6.08         1.22         2.17         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 
        0.79         3.48         1.35         1.02        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.35       124.27        66.81       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        26.56        36.36         0.10         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV 
        0.03        29.72         0.07         4.34         3.72         3.68 
TCGA-Q1-A6DW 
        5.72 

  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                       0.07                        0.03 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                     177.04                      147.35 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                      11.44                        6.02 
[1] "0.1 - 177.0 (11.4)" "0.0 - 147.3 (6.0)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
[1] "hr=" "3.2"
D29V2, continuous
                             vv
clus                          T1 T2+T3+T4
  DEL PEAK  7(5Q15) MUTATED   14        4
  DEL PEAK  7(5Q15) WILD-TYPE 35       19
D29V3, multiclass
          clus
vv         DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  T1                              14                          35
  T2+T3+T4                         4                          19
D29V4, binary
                             cls
clus                           0  1
  DEL PEAK  7(5Q15) MUTATED   10  8
  DEL PEAK  7(5Q15) WILD-TYPE 39 13
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED     10    8
  DEL PEAK  7(5Q15) WILD-TYPE   39   13
   clus
vv  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  0                        10                          39
  1                         8                          13
                             vv
clus                          M0 M1 MX
  DEL PEAK  7(5Q15) MUTATED   10  0  8
  DEL PEAK  7(5Q15) WILD-TYPE 35  2 18
D29V5, multiclass
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  M0                        10                          35
  M1                         0                           2
  MX                         8                          18
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  7(5Q15) MUTATED                                 21
  DEL PEAK  7(5Q15) WILD-TYPE                               45
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  7(5Q15) MUTATED                                               0
  DEL PEAK  7(5Q15) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  7(5Q15) MUTATED                                     0
  DEL PEAK  7(5Q15) WILD-TYPE                                   8
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  7(5Q15) MUTATED                                           0
  DEL PEAK  7(5Q15) WILD-TYPE                                         1
                             vv
clus                          MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  7(5Q15) MUTATED                                              0
  DEL PEAK  7(5Q15) WILD-TYPE                                            2
D29V6, multiclass
D29V7, binary
                             cls
clus                           0  1
  DEL PEAK  7(5Q15) MUTATED    5 16
  DEL PEAK  7(5Q15) WILD-TYPE  8 49
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED      5   16
  DEL PEAK  7(5Q15) WILD-TYPE    8   49
     clus
vv    DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  NO                          5                           8
  YES                        16                          49
D29V8, continuous
D29V9, continuous

Clustering(30) Variable = DEL PEAK  8(5Q35.2) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q35.2) MUTATED   16  6
  DEL PEAK  8(5Q35.2) WILD-TYPE 49  5
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           22                            54 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            6                             5 
$`DEL PEAK  8(5Q35.2) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK 
       11.44         5.46        35.61        40.93        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3Y4 TCGA-EA-A439 
        2.66        69.93         0.26         1.32        14.47        14.50 
TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A40J TCGA-HG-A2PA 
       20.35         1.22         0.99         0.07         1.35        25.41 
TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-LP-A4AW TCGA-Q1-A6DT 
       21.67       124.27         0.89         3.39 

$`DEL PEAK  8(5Q35.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
        2.43        78.31        58.88        95.08         6.02         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        1.74         0.82         0.62         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.26         0.69         7.92         6.94        14.70         4.44 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        6.08         1.22         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 
        1.48         0.79         3.48         1.02        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      147.35        66.81       117.40        96.92        78.67        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       26.56        36.36         0.10         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
       29.72         0.07         4.34         3.72         3.68         5.72 

  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                       124.27                        177.04 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                       12.955                         5.870 
[1] "0.1 - 124.3 (13.0)" "0.0 - 177.0 (5.9)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
[1] "hr=" "3.1"
D30V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  8(5Q35.2) MUTATED   14        5
  DEL PEAK  8(5Q35.2) WILD-TYPE 35       18
D30V3, multiclass
          clus
vv         DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  T1                                14                            35
  T2+T3+T4                           5                            18
D30V4, binary
                               cls
clus                             0  1
  DEL PEAK  8(5Q35.2) MUTATED   11  8
  DEL PEAK  8(5Q35.2) WILD-TYPE 38 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q35.2) MUTATED     11    8
  DEL PEAK  8(5Q35.2) WILD-TYPE   38   13
   clus
vv  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  0                          11                            38
  1                           8                            13
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(5Q35.2) MUTATED   12  0  7
  DEL PEAK  8(5Q35.2) WILD-TYPE 33  2 19
D30V5, multiclass
    clus
vv   DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  M0                          12                            33
  M1                           0                             2
  MX                           7                            19
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  8(5Q35.2) MUTATED                                 20
  DEL PEAK  8(5Q35.2) WILD-TYPE                               46
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  8(5Q35.2) MUTATED                                               0
  DEL PEAK  8(5Q35.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  8(5Q35.2) MUTATED                                     1
  DEL PEAK  8(5Q35.2) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  8(5Q35.2) MUTATED                                           1
  DEL PEAK  8(5Q35.2) WILD-TYPE                                         0
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  8(5Q35.2) MUTATED                                              0
  DEL PEAK  8(5Q35.2) WILD-TYPE                                            2
D30V6, multiclass
D30V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(5Q35.2) MUTATED    5 17
  DEL PEAK  8(5Q35.2) WILD-TYPE  8 48
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q35.2) MUTATED      5   17
  DEL PEAK  8(5Q35.2) WILD-TYPE    8   48
     clus
vv    DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  NO                            5                             8
  YES                          17                            48
D30V8, continuous
D30V9, continuous

Clustering(31) Variable = DEL PEAK  9(6P24.2) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(6P24.2) MUTATED    7  1
  DEL PEAK  9(6P24.2) WILD-TYPE 58 10
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                            8                            68 
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                            1                            10 
$`DEL PEAK  9(6P24.2) MUTATED`
TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A44S TCGA-EX-A1H6 TCGA-FU-A3HY 
       36.76        69.93         6.02         0.30         7.92         0.07 
TCGA-HG-A2PA TCGA-IR-A3L7 
       25.41       147.35 

$`DEL PEAK  9(6P24.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       87.75        58.88         2.66        95.08         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 
        1.74         1.32         0.82         0.62        14.47        14.50 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.78         0.33         0.26         0.69        20.35         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.44         6.08         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         1.02         1.45         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        3.48         1.35         1.02        21.67        20.78        14.93 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      124.27        66.81       117.40        96.92        78.67        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        36.36         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT 
        0.03        29.72         0.07         4.34         3.72         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.68         5.72 

  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                       16.665                         5.590 
[1] "0.1 - 147.3 (16.7)" "0.0 - 177.0 (5.6)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  9(6P24.2) MUTATED" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  9(6P24.2) WILD-TYPE"   "DEL PEAK  9(6P24.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
[1] "hr=" "1.6"
D31V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  9(6P24.2) MUTATED    6        2
  DEL PEAK  9(6P24.2) WILD-TYPE 43       21
D31V3, multiclass
          clus
vv         DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE
  T1                                 6                            43
  T2+T3+T4                           2                            21
D31V4, binary
                               cls
clus                             0  1
  DEL PEAK  9(6P24.2) MUTATED    3  5
  DEL PEAK  9(6P24.2) WILD-TYPE 46 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P24.2) MUTATED      3    5
  DEL PEAK  9(6P24.2) WILD-TYPE   46   16
   clus
vv  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE
  0                           3                            46
  1                           5                            16
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(6P24.2) MUTATED    6  0  2
  DEL PEAK  9(6P24.2) WILD-TYPE 39  2 24
D31V5, multiclass
    clus
vv   DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE
  M0                           6                            39
  M1                           0                             2
  MX                           2                            24
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  9(6P24.2) MUTATED                                  8
  DEL PEAK  9(6P24.2) WILD-TYPE                               58
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  9(6P24.2) MUTATED                                               0
  DEL PEAK  9(6P24.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  9(6P24.2) MUTATED                                     1
  DEL PEAK  9(6P24.2) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  9(6P24.2) MUTATED                                           0
  DEL PEAK  9(6P24.2) WILD-TYPE                                         1
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK  9(6P24.2) MUTATED                                              0
  DEL PEAK  9(6P24.2) WILD-TYPE                                            2
D31V6, multiclass
D31V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(6P24.2) MUTATED    1  8
  DEL PEAK  9(6P24.2) WILD-TYPE 12 57
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P24.2) MUTATED      1    8
  DEL PEAK  9(6P24.2) WILD-TYPE   12   57
     clus
vv    DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE
  NO                            1                            12
  YES                           8                            57
D31V8, continuous
[1] "Remove cluster labels:"      "DEL PEAK  9(6P24.2) MUTATED"
clus
  DEL PEAK  9(6P24.2) MUTATED DEL PEAK  9(6P24.2) WILD-TYPE 
                            2                            19 
                   TCGA-BI-A0VR                    TCGA-C5-A1BI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A5RQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-FU-A2QG 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3EO                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3LB 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-MU-A5YI 
"DEL PEAK  9(6P24.2) WILD-TYPE" "DEL PEAK  9(6P24.2) WILD-TYPE" 
                   TCGA-Q1-A6DW 
"DEL PEAK  9(6P24.2) WILD-TYPE" 
D31V9, continuous

Clustering(32) Variable = DEL PEAK 10(6Q26) MUTATION ANALYSIS
D32V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 10(6Q26) MUTATED   21  1
  DEL PEAK 10(6Q26) WILD-TYPE 44 10
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         22                          54 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          1                          10 
$`DEL PEAK 10(6Q26) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A439 
       49.48        36.56        67.46        69.93         0.26        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A3HY 
        1.78         0.30         7.92        14.70         1.22         0.07 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LC 
        3.48         1.35         1.02        20.78       147.35       117.40 
TCGA-IR-A3LH TCGA-LP-A4AX TCGA-MU-A5YI TCGA-Q1-A6DT 
       78.67         0.07         0.03         3.39 

$`DEL PEAK 10(6Q26) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI 
       30.41        11.44       177.04         5.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        95.08         6.02         6.84         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
        0.82         0.62        14.47         0.33         0.26         0.69 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG 
       20.35         6.94         4.44         6.08         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         1.02         1.45         1.58         1.48         0.79 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF 
       25.41        21.67        14.93       124.27        66.81        96.92 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y 
       81.96        26.56        36.36         0.10         0.89        13.87 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
       29.72         0.07         4.34         3.72         3.68         5.72 

  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                     147.35                      177.04 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                       5.70                        6.05 
[1] "0.0 - 147.3 (5.7)" "0.1 - 177.0 (6.0)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK 10(6Q26) MUTATED"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "DEL PEAK 10(6Q26) MUTATED"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK 10(6Q26) MUTATED"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "DEL PEAK 10(6Q26) MUTATED"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK 10(6Q26) MUTATED"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "DEL PEAK 10(6Q26) MUTATED"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
[1] "hr=" "4.7"
D32V2, continuous
                             vv
clus                          T1 T2+T3+T4
  DEL PEAK 10(6Q26) MUTATED   14        7
  DEL PEAK 10(6Q26) WILD-TYPE 35       16
D32V3, multiclass
          clus
vv         DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  T1                              14                          35
  T2+T3+T4                         7                          16
D32V4, binary
                             cls
clus                           0  1
  DEL PEAK 10(6Q26) MUTATED   12  7
  DEL PEAK 10(6Q26) WILD-TYPE 37 14
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED     12    7
  DEL PEAK 10(6Q26) WILD-TYPE   37   14
   clus
vv  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  0                        12                          37
  1                         7                          14
                             vv
clus                          M0 M1 MX
  DEL PEAK 10(6Q26) MUTATED   12  1  9
  DEL PEAK 10(6Q26) WILD-TYPE 33  1 17
D32V5, multiclass
    clus
vv   DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  M0                        12                          33
  M1                         1                           1
  MX                         9                          17
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 10(6Q26) MUTATED                                 19
  DEL PEAK 10(6Q26) WILD-TYPE                               47
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 10(6Q26) MUTATED                                               0
  DEL PEAK 10(6Q26) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 10(6Q26) MUTATED                                     4
  DEL PEAK 10(6Q26) WILD-TYPE                                   4
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 10(6Q26) MUTATED                                           0
  DEL PEAK 10(6Q26) WILD-TYPE                                         1
                             vv
clus                          MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 10(6Q26) MUTATED                                              0
  DEL PEAK 10(6Q26) WILD-TYPE                                            2
D32V6, multiclass
D32V7, binary
                             cls
clus                           0  1
  DEL PEAK 10(6Q26) MUTATED    2 21
  DEL PEAK 10(6Q26) WILD-TYPE 11 44
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED      2   21
  DEL PEAK 10(6Q26) WILD-TYPE   11   44
     clus
vv    DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  NO                          2                          11
  YES                        21                          44
D32V8, continuous
D32V9, continuous

Clustering(33) Variable = DEL PEAK 11(7Q34) MUTATION ANALYSIS
D33V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(7Q34) MUTATED    8  6
  DEL PEAK 11(7Q34) WILD-TYPE 57  5
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                         14                          62 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                          6                           5 
$`DEL PEAK 11(7Q34) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-EA-A3HT 
       11.44         5.46        67.46        35.61        40.93         0.62 
TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A40J TCGA-HM-A3JJ TCGA-MU-A51Y 
       14.50        20.35         0.99         1.35        21.67        13.87 
TCGA-MY-A5BF TCGA-Q1-A6DT 
        4.34         3.39 

$`DEL PEAK 11(7Q34) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        30.41        36.56       177.04        53.13         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       78.31        87.75        58.88        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       95.08         6.02         6.84         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.82        14.47         1.78         0.30         0.33         0.26 
TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
        0.69         7.92         6.94        14.70         4.44         6.08 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         1.22         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.58         1.48         0.79         3.48         1.02        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78        14.93       147.35       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
       96.92        78.67        81.96        26.56        36.36         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 
        0.89         0.07         0.03        29.72         0.07         3.72 
TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.68         5.72 

  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                       0.62                        0.03 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                      67.46                      177.04 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                     12.655                       5.870 
[1] "0.6 - 67.5 (12.7)" "0.0 - 177.0 (5.9)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A3Y4 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A439                  TCGA-EA-A43B 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A44S                  TCGA-EA-A4BA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A50E                  TCGA-EA-A5ZD 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EX-A69L                  TCGA-EX-A69M 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MU-A51Y 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-MU-A5YI                  TCGA-MY-A5BD 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-Q1-A5R1                  TCGA-Q1-A6DT 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-Q1-A6DV                  TCGA-Q1-A6DW 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
[1] "hr=" "7.1"
D33V2, continuous
                             vv
clus                          T1 T2+T3+T4
  DEL PEAK 11(7Q34) MUTATED    6        5
  DEL PEAK 11(7Q34) WILD-TYPE 43       18
D33V3, multiclass
          clus
vv         DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  T1                               6                          43
  T2+T3+T4                         5                          18
D33V4, binary
                             cls
clus                           0  1
  DEL PEAK 11(7Q34) MUTATED    6  5
  DEL PEAK 11(7Q34) WILD-TYPE 43 16
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q34) MUTATED      6    5
  DEL PEAK 11(7Q34) WILD-TYPE   43   16
   clus
vv  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  0                         6                          43
  1                         5                          16
                             vv
clus                          M0 M1 MX
  DEL PEAK 11(7Q34) MUTATED    4  0  7
  DEL PEAK 11(7Q34) WILD-TYPE 41  2 19
D33V5, multiclass
    clus
vv   DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  M0                         4                          41
  M1                         0                           2
  MX                         7                          19
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 11(7Q34) MUTATED                                 13
  DEL PEAK 11(7Q34) WILD-TYPE                               53
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 11(7Q34) MUTATED                                               0
  DEL PEAK 11(7Q34) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 11(7Q34) MUTATED                                     1
  DEL PEAK 11(7Q34) WILD-TYPE                                   7
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 11(7Q34) MUTATED                                           0
  DEL PEAK 11(7Q34) WILD-TYPE                                         1
                             vv
clus                          MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 11(7Q34) MUTATED                                              0
  DEL PEAK 11(7Q34) WILD-TYPE                                            2
D33V6, multiclass
D33V7, binary
                             cls
clus                           0  1
  DEL PEAK 11(7Q34) MUTATED    5  9
  DEL PEAK 11(7Q34) WILD-TYPE  8 56
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q34) MUTATED      5    9
  DEL PEAK 11(7Q34) WILD-TYPE    8   56
     clus
vv    DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  NO                          5                           8
  YES                         9                          56
D33V8, continuous
D33V9, continuous

Clustering(34) Variable = DEL PEAK 12(10Q23.31) MUTATION ANALYSIS
D34V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 12(10Q23.31) MUTATED   12  5
  DEL PEAK 12(10Q23.31) WILD-TYPE 53  6
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                             17                              59 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                              5                               6 
$`DEL PEAK 12(10Q23.31) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1MI TCGA-DS-A0VK TCGA-EA-A439 TCGA-EX-A1H5 
       30.41        11.44        35.61        36.76        14.50        20.35 
TCGA-FU-A2QG TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.99         1.58         1.48         1.35        21.67        20.78 
TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LL TCGA-LP-A4AX TCGA-Q1-A6DT 
       66.81        78.67        36.36         0.07         3.39 

$`DEL PEAK 12(10Q23.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
        2.43        40.93        78.31        87.75        58.88         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       69.93        95.08         6.02         6.84         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S 
        1.32         0.82         0.62        14.47         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.33         0.26         0.69         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY 
        4.44         6.08         1.22         1.22         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.02         1.45         0.79         3.48         1.02        25.41 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI 
       14.93       147.35       124.27       117.40        96.92        81.96 
TCGA-IR-A3LK TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
       26.56         0.10         0.89        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.72         3.68         5.72 

  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                          78.67                          177.04 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                          20.35                            5.46 
[1] "0.1 - 78.7 (20.4)" "0.0 - 177.0 (5.5)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 12(10Q23.31) MUTATED"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 12(10Q23.31) MUTATED"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 12(10Q23.31) MUTATED"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
[1] "hr=" "3.2"
D34V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 12(10Q23.31) MUTATED   10        6
  DEL PEAK 12(10Q23.31) WILD-TYPE 39       17
D34V3, multiclass
          clus
vv         DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  T1                                  10                              39
  T2+T3+T4                             6                              17
D34V4, binary
                                 cls
clus                               0  1
  DEL PEAK 12(10Q23.31) MUTATED    8  8
  DEL PEAK 12(10Q23.31) WILD-TYPE 41 13
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 12(10Q23.31) MUTATED      8    8
  DEL PEAK 12(10Q23.31) WILD-TYPE   41   13
   clus
vv  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  0                             8                              41
  1                             8                              13
                                 vv
clus                              M0 M1 MX
  DEL PEAK 12(10Q23.31) MUTATED    9  0  7
  DEL PEAK 12(10Q23.31) WILD-TYPE 36  2 19
D34V5, multiclass
    clus
vv   DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  M0                             9                              36
  M1                             0                               2
  MX                             7                              19
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 12(10Q23.31) MUTATED                                 16
  DEL PEAK 12(10Q23.31) WILD-TYPE                               50
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 12(10Q23.31) MUTATED                                               0
  DEL PEAK 12(10Q23.31) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 12(10Q23.31) MUTATED                                     2
  DEL PEAK 12(10Q23.31) WILD-TYPE                                   6
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 12(10Q23.31) MUTATED                                           0
  DEL PEAK 12(10Q23.31) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 12(10Q23.31) MUTATED                                              0
  DEL PEAK 12(10Q23.31) WILD-TYPE                                            2
D34V6, multiclass
D34V7, binary
                                 cls
clus                               0  1
  DEL PEAK 12(10Q23.31) MUTATED    5 13
  DEL PEAK 12(10Q23.31) WILD-TYPE  8 52
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 12(10Q23.31) MUTATED      5   13
  DEL PEAK 12(10Q23.31) WILD-TYPE    8   52
     clus
vv    DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  NO                              5                               8
  YES                            13                              52
D34V8, continuous
D34V9, continuous

Clustering(35) Variable = DEL PEAK 13(11P15.1) MUTATION ANALYSIS
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 13(11P15.1) MUTATED   20  6
  DEL PEAK 13(11P15.1) WILD-TYPE 45  5
  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                            26                             50 
  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                             6                              5 
$`DEL PEAK 13(11P15.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VK 
       49.48       177.04         5.46        35.61        87.75        36.76 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
       69.93        95.08         0.26        14.50         1.78         0.30 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3WB 
        0.26        20.35         6.08         1.22         1.45         0.79 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LK TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BE 
       66.81       117.40        26.56         0.10         0.07         0.07 
TCGA-Q1-A6DT TCGA-Q1-A6DW 
        3.39         5.72 

$`DEL PEAK 13(11P15.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       30.41        11.44        36.56        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-DS-A5RQ 
       40.93        78.31        58.88         2.66         6.02         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A4BA 
        1.74         1.32         0.82         0.62        14.47         0.33 
TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K 
        0.69         7.92         6.94        14.70         4.44         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        0.99         2.17         0.07         1.02         1.58         1.48 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48         1.35         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
       14.93       147.35       124.27        96.92        78.67        81.96 
TCGA-IR-A3LL TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF 
       36.36         0.89        13.87         0.03        29.72         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A6DV 
        3.72         3.68 

  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                        177.04                         147.35 
  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE 
                          5.90                           6.43 
[1] "0.1 - 177.0 (5.9)" "0.0 - 147.3 (6.4)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 13(11P15.1) MUTATED"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 13(11P15.1) WILD-TYPE" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 13(11P15.1) MUTATED" "DEL PEAK 13(11P15.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 13(11P15.1) WILD-TYPE"   "DEL PEAK 13(11P15.1) MUTATED" 
[1] "hr=" "1.9"
D35V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 13(11P15.1) MUTATED   16        8
  DEL PEAK 13(11P15.1) WILD-TYPE 33       15
D35V3, multiclass
          clus
vv         DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE
  T1                                 16                             33
  T2+T3+T4                            8                             15
D35V4, binary
                                cls
clus                              0  1
  DEL PEAK 13(11P15.1) MUTATED   15  9
  DEL PEAK 13(11P15.1) WILD-TYPE 34 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(11P15.1) MUTATED     15    9
  DEL PEAK 13(11P15.1) WILD-TYPE   34   12
   clus
vv  DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE
  0                           15                             34
  1                            9                             12
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(11P15.1) MUTATED   18  0  8
  DEL PEAK 13(11P15.1) WILD-TYPE 27  2 18
D35V5, multiclass
    clus
vv   DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE
  M0                           18                             27
  M1                            0                              2
  MX                            8                             18
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 13(11P15.1) MUTATED                                 26
  DEL PEAK 13(11P15.1) WILD-TYPE                               40
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 13(11P15.1) MUTATED                                               0
  DEL PEAK 13(11P15.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 13(11P15.1) MUTATED                                     1
  DEL PEAK 13(11P15.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 13(11P15.1) MUTATED                                           0
  DEL PEAK 13(11P15.1) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 13(11P15.1) MUTATED                                              0
  DEL PEAK 13(11P15.1) WILD-TYPE                                            2
D35V6, multiclass
D35V7, binary
                                cls
clus                              0  1
  DEL PEAK 13(11P15.1) MUTATED    4 23
  DEL PEAK 13(11P15.1) WILD-TYPE  9 42
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(11P15.1) MUTATED      4   23
  DEL PEAK 13(11P15.1) WILD-TYPE    9   42
     clus
vv    DEL PEAK 13(11P15.1) MUTATED DEL PEAK 13(11P15.1) WILD-TYPE
  NO                             4                              9
  YES                           23                             42
D35V8, continuous
D35V9, continuous

Clustering(36) Variable = DEL PEAK 14(11Q23.3) MUTATION ANALYSIS
D36V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(11Q23.3) MUTATED   35  8
  DEL PEAK 14(11Q23.3) WILD-TYPE 30  3
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                            43                             33 
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                             8                              3 
$`DEL PEAK 14(11Q23.3) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        11.44       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
       35.61         2.43        78.31        87.75        36.76         2.66 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
       95.08         6.02         6.84         0.26         1.32        14.50 
TCGA-EA-A43B TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A69L TCGA-EX-A69M 
        1.78         0.26        20.35         6.94         4.44         6.08 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-IR-A3LB 
        1.45         1.58         0.79        21.67       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX 
      117.40        78.67        81.96        36.36         0.10         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DT 
       13.87         0.03        29.72         0.07         4.34         3.39 
TCGA-Q1-A6DW 
        5.72 

$`DEL PEAK 14(11Q23.3) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-DS-A0VM TCGA-EA-A3HQ 
       36.56         5.46        40.93        58.88        69.93         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5ZD 
        0.82         0.62        14.47         0.30         0.33         0.69 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        7.92        14.70         1.22         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        0.07         1.02         1.48         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-IR-A3LK 
       25.41        20.78        14.93       147.35        96.92        26.56 
TCGA-LP-A4AW TCGA-Q1-A5R1 TCGA-Q1-A6DV 
        0.89         3.72         3.68 

  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                          0.03                           0.07 
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                        177.04                         147.35 
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                         11.44                           3.48 
[1] "0.0 - 177.0 (11.4)" "0.1 - 147.3 (3.5)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 14(11Q23.3) WILD-TYPE" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 14(11Q23.3) MUTATED" "DEL PEAK 14(11Q23.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 14(11Q23.3) MUTATED"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 14(11Q23.3) WILD-TYPE"   "DEL PEAK 14(11Q23.3) MUTATED" 
[1] "hr=" "1.2"
D36V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 14(11Q23.3) MUTATED   25       15
  DEL PEAK 14(11Q23.3) WILD-TYPE 24        8
D36V3, multiclass
          clus
vv         DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  T1                                 25                             24
  T2+T3+T4                           15                              8
D36V4, binary
                                cls
clus                              0  1
  DEL PEAK 14(11Q23.3) MUTATED   27 12
  DEL PEAK 14(11Q23.3) WILD-TYPE 22  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11Q23.3) MUTATED     27   12
  DEL PEAK 14(11Q23.3) WILD-TYPE   22    9
   clus
vv  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  0                           27                             22
  1                           12                              9
                                vv
clus                             M0 M1 MX
  DEL PEAK 14(11Q23.3) MUTATED   26  1 15
  DEL PEAK 14(11Q23.3) WILD-TYPE 19  1 11
D36V5, multiclass
    clus
vv   DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  M0                           26                             19
  M1                            1                              1
  MX                           15                             11
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 14(11Q23.3) MUTATED                                 41
  DEL PEAK 14(11Q23.3) WILD-TYPE                               25
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 14(11Q23.3) MUTATED                                               0
  DEL PEAK 14(11Q23.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 14(11Q23.3) MUTATED                                     2
  DEL PEAK 14(11Q23.3) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 14(11Q23.3) MUTATED                                           1
  DEL PEAK 14(11Q23.3) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 14(11Q23.3) MUTATED                                              0
  DEL PEAK 14(11Q23.3) WILD-TYPE                                            2
D36V6, multiclass
D36V7, binary
                                cls
clus                              0  1
  DEL PEAK 14(11Q23.3) MUTATED    9 35
  DEL PEAK 14(11Q23.3) WILD-TYPE  4 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11Q23.3) MUTATED      9   35
  DEL PEAK 14(11Q23.3) WILD-TYPE    4   30
     clus
vv    DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  NO                             9                              4
  YES                           35                             30
D36V8, continuous
D36V9, continuous

Clustering(37) Variable = DEL PEAK 15(11Q25) MUTATION ANALYSIS
D37V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 15(11Q25) MUTATED   38 10
  DEL PEAK 15(11Q25) WILD-TYPE 27  1
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          48                           28 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          10                            1 
$`DEL PEAK 15(11Q25) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        11.44       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       53.13        35.61         2.43        78.31        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT 
        2.66        69.93        95.08         6.02         6.84         0.26 
TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.32        14.50         1.78         0.26        20.35         6.94 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ 
        4.44         6.08         1.22         0.07         1.45         1.58 
TCGA-FU-A3WB TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LH 
        0.79        21.67       124.27        66.81       117.40        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        26.56        36.36         0.10         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DT TCGA-Q1-A6DW 
        0.03        29.72         0.07         4.34         3.39         5.72 

$`DEL PEAK 15(11Q25) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       36.56        40.93        58.88         1.74         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A449 
       14.47         0.30         0.33         0.69         7.92        14.70 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3YQ 
        1.22         0.99         2.17         1.02         1.48         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.35         1.02        25.41        20.78        14.93       147.35 
TCGA-IR-A3LF TCGA-LP-A4AW TCGA-Q1-A5R1 TCGA-Q1-A6DV 
       96.92         0.89         3.72         3.68 

  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                        0.03                         0.30 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                      177.04                       147.35 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                       9.190                        2.825 
[1] "0.0 - 177.0 (9.2)" "0.3 - 147.3 (2.8)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
[1] "hr=" "3.3"
D37V2, continuous
                              vv
clus                           T1 T2+T3+T4
  DEL PEAK 15(11Q25) MUTATED   28       16
  DEL PEAK 15(11Q25) WILD-TYPE 21        7
D37V3, multiclass
          clus
vv         DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  T1                               28                           21
  T2+T3+T4                         16                            7
D37V4, binary
                              cls
clus                            0  1
  DEL PEAK 15(11Q25) MUTATED   29 14
  DEL PEAK 15(11Q25) WILD-TYPE 20  7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 15(11Q25) MUTATED     29   14
  DEL PEAK 15(11Q25) WILD-TYPE   20    7
   clus
vv  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  0                         29                           20
  1                         14                            7
                              vv
clus                           M0 M1 MX
  DEL PEAK 15(11Q25) MUTATED   28  1 17
  DEL PEAK 15(11Q25) WILD-TYPE 17  1  9
D37V5, multiclass
    clus
vv   DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  M0                         28                           17
  M1                          1                            1
  MX                         17                            9
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 15(11Q25) MUTATED                                 46
  DEL PEAK 15(11Q25) WILD-TYPE                               20
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 15(11Q25) MUTATED                                               0
  DEL PEAK 15(11Q25) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 15(11Q25) MUTATED                                     2
  DEL PEAK 15(11Q25) WILD-TYPE                                   6
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 15(11Q25) MUTATED                                           1
  DEL PEAK 15(11Q25) WILD-TYPE                                         0
                              vv
clus                           MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 15(11Q25) MUTATED                                              0
  DEL PEAK 15(11Q25) WILD-TYPE                                            2
D37V6, multiclass
D37V7, binary
                              cls
clus                            0  1
  DEL PEAK 15(11Q25) MUTATED   10 39
  DEL PEAK 15(11Q25) WILD-TYPE  3 26
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 15(11Q25) MUTATED     10   39
  DEL PEAK 15(11Q25) WILD-TYPE    3   26
     clus
vv    DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  NO                          10                            3
  YES                         39                           26
D37V8, continuous
D37V9, continuous

Clustering(38) Variable = DEL PEAK 16(13Q12.12) MUTATION ANALYSIS
D38V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 16(13Q12.12) MUTATED   20  2
  DEL PEAK 16(13Q12.12) WILD-TYPE 45  9
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                             22                              54 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                              2                               9 
$`DEL PEAK 16(13Q12.12) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-DR-A0ZL TCGA-DS-A0VM TCGA-DS-A0VN 
       49.48        30.41         5.46        87.75        69.93        95.08 
TCGA-EA-A1QT TCGA-EA-A44S TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A69M TCGA-FU-A23L 
        0.26         0.30         0.69        20.35         6.08         1.22 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LH 
        1.45         1.58        25.41        21.67       147.35        78.67 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-Q1-A6DT 
        0.10         0.89         0.07         3.39 

$`DEL PEAK 16(13Q12.12) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       11.44        36.56       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
        2.43        40.93        78.31        58.88        36.76         2.66 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.02         6.84         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 
       14.47        14.50         1.78         0.33         0.26         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        6.94        14.70         4.44         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        0.07         1.02         1.48         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
        1.02        20.78        14.93       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-MU-A51Y TCGA-MU-A5YI 
       96.92        81.96        26.56        36.36        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
       29.72         0.07         4.34         3.72         3.68         5.72 

  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                         147.35                          177.04 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                           5.77                            6.43 
[1] "0.1 - 147.3 (5.8)" "0.0 - 177.0 (6.4)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
[1] "hr=" "2.2"
D38V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 16(13Q12.12) MUTATED   14        7
  DEL PEAK 16(13Q12.12) WILD-TYPE 35       16
D38V3, multiclass
          clus
vv         DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  T1                                  14                              35
  T2+T3+T4                             7                              16
D38V4, binary
                                 cls
clus                               0  1
  DEL PEAK 16(13Q12.12) MUTATED   13  8
  DEL PEAK 16(13Q12.12) WILD-TYPE 36 13
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(13Q12.12) MUTATED     13    8
  DEL PEAK 16(13Q12.12) WILD-TYPE   36   13
   clus
vv  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  0                            13                              36
  1                             8                              13
                                 vv
clus                              M0 M1 MX
  DEL PEAK 16(13Q12.12) MUTATED   16  0  6
  DEL PEAK 16(13Q12.12) WILD-TYPE 29  2 20
D38V5, multiclass
    clus
vv   DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  M0                            16                              29
  M1                             0                               2
  MX                             6                              20
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 16(13Q12.12) MUTATED                                 24
  DEL PEAK 16(13Q12.12) WILD-TYPE                               42
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 16(13Q12.12) MUTATED                                               0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 16(13Q12.12) MUTATED                                     0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                   8
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 16(13Q12.12) MUTATED                                           0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 16(13Q12.12) MUTATED                                              0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                            2
D38V6, multiclass
D38V7, binary
                                 cls
clus                               0  1
  DEL PEAK 16(13Q12.12) MUTATED    4 20
  DEL PEAK 16(13Q12.12) WILD-TYPE  9 45
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(13Q12.12) MUTATED      4   20
  DEL PEAK 16(13Q12.12) WILD-TYPE    9   45
     clus
vv    DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  NO                              4                               9
  YES                            20                              45
D38V8, continuous
D38V9, continuous

Clustering(39) Variable = DEL PEAK 17(13Q14.2) MUTATION ANALYSIS
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(13Q14.2) MUTATED   23  1
  DEL PEAK 17(13Q14.2) WILD-TYPE 42 10
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            24                             52 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                             1                             10 
$`DEL PEAK 17(13Q14.2) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-DR-A0ZL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       49.48        30.41        87.75        69.93        95.08         6.02 
TCGA-EA-A1QT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3NI 
        0.26        14.50        20.35         6.08         1.22         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.58         1.48        25.41        21.67        14.93       147.35 
TCGA-IR-A3LH TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BE TCGA-Q1-A6DT 
       78.67         0.10         0.89         0.07         0.07         3.39 

$`DEL PEAK 17(13Q14.2) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       11.44        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        40.93        78.31        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        2.66         6.84         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
       14.47         1.78         0.30         0.33         0.26         0.69 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A2QG 
        7.92         6.94        14.70         4.44         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        2.17         0.07         1.02         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HM-A3JK TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        1.02        20.78       124.27        66.81       117.40        96.92 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
       81.96        26.56        36.36        13.87         0.03        29.72 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        4.34         3.72         3.68         5.72 

  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                        147.35                         177.04 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                         10.29                           5.59 
[1] "0.1 - 147.3 (10.3)" "0.0 - 177.0 (5.6)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
[1] "hr=" "5.1"
D39V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 17(13Q14.2) MUTATED   16        8
  DEL PEAK 17(13Q14.2) WILD-TYPE 33       15
D39V3, multiclass
          clus
vv         DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  T1                                 16                             33
  T2+T3+T4                            8                             15
D39V4, binary
                                cls
clus                              0  1
  DEL PEAK 17(13Q14.2) MUTATED   15  9
  DEL PEAK 17(13Q14.2) WILD-TYPE 34 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) MUTATED     15    9
  DEL PEAK 17(13Q14.2) WILD-TYPE   34   12
   clus
vv  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  0                           15                             34
  1                            9                             12
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(13Q14.2) MUTATED   17  0  8
  DEL PEAK 17(13Q14.2) WILD-TYPE 28  2 18
D39V5, multiclass
    clus
vv   DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  M0                           17                             28
  M1                            0                              2
  MX                            8                             18
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 17(13Q14.2) MUTATED                                 26
  DEL PEAK 17(13Q14.2) WILD-TYPE                               40
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 17(13Q14.2) MUTATED                                               0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 17(13Q14.2) MUTATED                                     0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 17(13Q14.2) MUTATED                                           0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 17(13Q14.2) MUTATED                                              0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                            2
D39V6, multiclass
D39V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(13Q14.2) MUTATED    4 22
  DEL PEAK 17(13Q14.2) WILD-TYPE  9 43
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) MUTATED      4   22
  DEL PEAK 17(13Q14.2) WILD-TYPE    9   43
     clus
vv    DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  NO                             4                              9
  YES                           22                             43
D39V8, continuous
D39V9, continuous

Clustering(40) Variable = DEL PEAK 18(14Q32.31) MUTATION ANALYSIS
D40V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 18(14Q32.31) MUTATED   10  0
  DEL PEAK 18(14Q32.31) WILD-TYPE 55 11
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                             10                              66 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              0                              11 
$`DEL PEAK 18(14Q32.31) MUTATED`
TCGA-C5-A1MF TCGA-EA-A3HQ TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-FU-A23L TCGA-FU-A3TX 
       53.13         1.74        14.47         1.78         1.22         1.48 
TCGA-IR-A3LA TCGA-IR-A3LH TCGA-LP-A4AU TCGA-MY-A5BD 
      124.27        78.67         0.10        29.72 

$`DEL PEAK 18(14Q32.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       67.46        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        6.84         0.26         1.32         0.82         0.62        14.50 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.30         0.33         0.26         0.69        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG 
        6.94        14.70         4.44         6.08         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB 
        2.17         0.07         1.02         1.45         1.58         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48         1.35         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI 
       14.93       147.35        66.81       117.40        96.92        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       26.56        36.36         0.89         0.07        13.87         0.03 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.72         3.39         3.68         5.72 

  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                         124.27                          177.04 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                          8.125                           6.050 
[1] "0.1 - 124.3 (8.1)" "0.0 - 177.0 (6.0)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
[1] "hr="     "2.3e+08"
D40V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 18(14Q32.31) MUTATED    5        5
  DEL PEAK 18(14Q32.31) WILD-TYPE 44       18
D40V3, multiclass
          clus
vv         DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  T1                                   5                              44
  T2+T3+T4                             5                              18
D40V4, binary
                                 cls
clus                               0  1
  DEL PEAK 18(14Q32.31) MUTATED    9  1
  DEL PEAK 18(14Q32.31) WILD-TYPE 40 20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) MUTATED      9    1
  DEL PEAK 18(14Q32.31) WILD-TYPE   40   20
   clus
vv  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  0                             9                              40
  1                             1                              20
                                 vv
clus                              M0 M1 MX
  DEL PEAK 18(14Q32.31) MUTATED    8  0  2
  DEL PEAK 18(14Q32.31) WILD-TYPE 37  2 24
D40V5, multiclass
    clus
vv   DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  M0                             8                              37
  M1                             0                               2
  MX                             2                              24
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 18(14Q32.31) MUTATED                                  9
  DEL PEAK 18(14Q32.31) WILD-TYPE                               57
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 18(14Q32.31) MUTATED                                               0
  DEL PEAK 18(14Q32.31) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 18(14Q32.31) MUTATED                                     0
  DEL PEAK 18(14Q32.31) WILD-TYPE                                   8
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 18(14Q32.31) MUTATED                                           1
  DEL PEAK 18(14Q32.31) WILD-TYPE                                         0
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 18(14Q32.31) MUTATED                                              0
  DEL PEAK 18(14Q32.31) WILD-TYPE                                            2
D40V6, multiclass
D40V7, binary
                                 cls
clus                               0  1
  DEL PEAK 18(14Q32.31) MUTATED    1  9
  DEL PEAK 18(14Q32.31) WILD-TYPE 12 56
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) MUTATED      1    9
  DEL PEAK 18(14Q32.31) WILD-TYPE   12   56
     clus
vv    DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  NO                              1                              12
  YES                             9                              56
D40V8, continuous
[1] "Remove cluster labels:"        "DEL PEAK 18(14Q32.31) MUTATED"
clus
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              2                              19 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A5RQ                      TCGA-EX-A1H5 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LB                      TCGA-MU-A5YI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-Q1-A6DW 
"DEL PEAK 18(14Q32.31) WILD-TYPE" 
D40V9, continuous

Clustering(41) Variable = DEL PEAK 19(15Q15.1) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(15Q15.1) MUTATED   13  4
  DEL PEAK 19(15Q15.1) WILD-TYPE 52  7
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            17                             59 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                             4                              7 
$`DEL PEAK 19(15Q15.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A69L 
       30.41        40.93        87.75        14.50         1.78         4.44 
TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A40J TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-IR-A3LB 
        1.22         0.07         1.35        21.67       124.27        66.81 
TCGA-IR-A3LH TCGA-IR-A3LK TCGA-LP-A4AX TCGA-MY-A5BD TCGA-Q1-A5R1 
       78.67        26.56         0.07        29.72         3.72 

$`DEL PEAK 19(15Q15.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        11.44        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       53.13        35.61         2.43        78.31        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT 
        2.66        69.93        95.08         6.02         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A44S 
        1.74         1.32         0.82         0.62        14.47         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.33         0.26         0.69        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
       14.70         6.08         1.22         0.99         2.17         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.45         1.58         1.48         0.79         3.48         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF 
       25.41        20.78        14.93       147.35       117.40        96.92 
TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI 
       81.96        36.36         0.10         0.89        13.87         0.03 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.39         3.68         5.72 

  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                         21.67                           5.72 
[1] "0.1 - 124.3 (21.7)" "0.0 - 177.0 (5.7)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
[1] "hr=" "1.5"
D41V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 19(15Q15.1) MUTATED   11        5
  DEL PEAK 19(15Q15.1) WILD-TYPE 38       18
D41V3, multiclass
          clus
vv         DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  T1                                 11                             38
  T2+T3+T4                            5                             18
D41V4, binary
                                cls
clus                              0  1
  DEL PEAK 19(15Q15.1) MUTATED   13  3
  DEL PEAK 19(15Q15.1) WILD-TYPE 36 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) MUTATED     13    3
  DEL PEAK 19(15Q15.1) WILD-TYPE   36   18
   clus
vv  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  0                           13                             36
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 19(15Q15.1) MUTATED   11  0  5
  DEL PEAK 19(15Q15.1) WILD-TYPE 34  2 21
D41V5, multiclass
    clus
vv   DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  M0                           11                             34
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 19(15Q15.1) MUTATED                                 13
  DEL PEAK 19(15Q15.1) WILD-TYPE                               53
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 19(15Q15.1) MUTATED                                               0
  DEL PEAK 19(15Q15.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 19(15Q15.1) MUTATED                                     2
  DEL PEAK 19(15Q15.1) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 19(15Q15.1) MUTATED                                           1
  DEL PEAK 19(15Q15.1) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 19(15Q15.1) MUTATED                                              1
  DEL PEAK 19(15Q15.1) WILD-TYPE                                            1
D41V6, multiclass
D41V7, binary
                                cls
clus                              0  1
  DEL PEAK 19(15Q15.1) MUTATED    1 16
  DEL PEAK 19(15Q15.1) WILD-TYPE 12 49
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) MUTATED      1   16
  DEL PEAK 19(15Q15.1) WILD-TYPE   12   49
     clus
vv    DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  NO                             1                             12
  YES                           16                             49
D41V8, continuous
D41V9, continuous

Clustering(42) Variable = DEL PEAK 20(16Q12.1) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(16Q12.1) MUTATED   12  2
  DEL PEAK 20(16Q12.1) WILD-TYPE 53  9
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                            14                             62 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                             2                              9 
$`DEL PEAK 20(16Q12.1) MUTATED`
TCGA-DR-A0ZL TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B TCGA-EX-A1H6 
       87.75         6.84         0.26         1.32         1.78         7.92 
TCGA-FU-A3TX TCGA-FU-A40J TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK 
        1.48         1.35       124.27        66.81        96.92        26.56 
TCGA-MY-A5BF TCGA-Q1-A6DT 
        4.34         3.39 

$`DEL PEAK 20(16Q12.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S 
        1.74         0.82         0.62        14.47        14.50         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 
        0.33         0.26         0.69        20.35         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        4.44         6.08         1.22         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.45         1.58         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78        14.93       147.35 
TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
      117.40        78.67        81.96        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 
        0.07        13.87         0.03        29.72         0.07         3.72 
TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.68         5.72 

  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                          0.26                           0.03 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                          5.59                           6.05 
[1] "0.3 - 124.3 (5.6)" "0.0 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 20(16Q12.1) MUTATED"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 20(16Q12.1) MUTATED" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 20(16Q12.1) WILD-TYPE"   "DEL PEAK 20(16Q12.1) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 20(16Q12.1) MUTATED   11        3
  DEL PEAK 20(16Q12.1) WILD-TYPE 38       20
D42V3, multiclass
          clus
vv         DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  T1                                 11                             38
  T2+T3+T4                            3                             20
D42V4, binary
                                cls
clus                              0  1
  DEL PEAK 20(16Q12.1) MUTATED   13  1
  DEL PEAK 20(16Q12.1) WILD-TYPE 36 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q12.1) MUTATED     13    1
  DEL PEAK 20(16Q12.1) WILD-TYPE   36   20
   clus
vv  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  0                           13                             36
  1                            1                             20
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(16Q12.1) MUTATED   10  0  5
  DEL PEAK 20(16Q12.1) WILD-TYPE 35  2 21
D42V5, multiclass
    clus
vv   DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  M0                           10                             35
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 20(16Q12.1) MUTATED                                 11
  DEL PEAK 20(16Q12.1) WILD-TYPE                               55
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 20(16Q12.1) MUTATED                                               1
  DEL PEAK 20(16Q12.1) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 20(16Q12.1) MUTATED                                     3
  DEL PEAK 20(16Q12.1) WILD-TYPE                                   5
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 20(16Q12.1) MUTATED                                           1
  DEL PEAK 20(16Q12.1) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 20(16Q12.1) MUTATED                                              0
  DEL PEAK 20(16Q12.1) WILD-TYPE                                            2
D42V6, multiclass
D42V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(16Q12.1) MUTATED    0 16
  DEL PEAK 20(16Q12.1) WILD-TYPE 13 49
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q12.1) MUTATED      0   16
  DEL PEAK 20(16Q12.1) WILD-TYPE   13   49
     clus
vv    DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE
  NO                             0                             13
  YES                           16                             49
D42V8, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(16Q12.1) MUTATED"
clus
  DEL PEAK 20(16Q12.1) MUTATED DEL PEAK 20(16Q12.1) WILD-TYPE 
                             2                             19 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-MU-A5YI 
"DEL PEAK 20(16Q12.1) WILD-TYPE" "DEL PEAK 20(16Q12.1) WILD-TYPE" 
                    TCGA-Q1-A6DW 
"DEL PEAK 20(16Q12.1) WILD-TYPE" 
D42V9, continuous

Clustering(43) Variable = DEL PEAK 21(16Q23.1) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(16Q23.1) MUTATED   11  1
  DEL PEAK 21(16Q23.1) WILD-TYPE 54 10
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            12                             64 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                             1                             10 
$`DEL PEAK 21(16Q23.1) MUTATED`
TCGA-DS-A3LQ TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A69M TCGA-FU-A3EO TCGA-FU-A3TQ 
        6.02         1.78         7.92         6.08         2.17         1.58 
TCGA-FU-A3TX TCGA-FU-A40J TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-MY-A5BF 
        1.48         1.35       124.27        66.81        96.92         4.34 

$`DEL PEAK 21(16Q23.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66        69.93        95.08 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
       14.47        14.50         0.30         0.33         0.26         0.69 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L 
       20.35         6.94        14.70         4.44         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.99         0.07         1.02         1.45         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78        14.93       147.35 
TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
      117.40        78.67        81.96        26.56        36.36         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.89         0.07        13.87         0.03        29.72         0.07 
TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.39         3.68         5.72 

  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                          1.35                           0.03 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                          5.18                           6.89 
[1] "1.4 - 124.3 (5.2)" "0.0 - 177.0 (6.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.8"
D43V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 21(16Q23.1) MUTATED    8        5
  DEL PEAK 21(16Q23.1) WILD-TYPE 41       18
D43V3, multiclass
          clus
vv         DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  T1                                  8                             41
  T2+T3+T4                            5                             18
D43V4, binary
                                cls
clus                              0  1
  DEL PEAK 21(16Q23.1) MUTATED   10  3
  DEL PEAK 21(16Q23.1) WILD-TYPE 39 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) MUTATED     10    3
  DEL PEAK 21(16Q23.1) WILD-TYPE   39   18
   clus
vv  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  0                           10                             39
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(16Q23.1) MUTATED    8  0  5
  DEL PEAK 21(16Q23.1) WILD-TYPE 37  2 21
D43V5, multiclass
    clus
vv   DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  M0                            8                             37
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 21(16Q23.1) MUTATED                                  8
  DEL PEAK 21(16Q23.1) WILD-TYPE                               58
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 21(16Q23.1) MUTATED                                               1
  DEL PEAK 21(16Q23.1) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 21(16Q23.1) MUTATED                                     4
  DEL PEAK 21(16Q23.1) WILD-TYPE                                   4
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 21(16Q23.1) MUTATED                                           1
  DEL PEAK 21(16Q23.1) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 21(16Q23.1) MUTATED                                              0
  DEL PEAK 21(16Q23.1) WILD-TYPE                                            2
D43V6, multiclass
D43V7, binary
                                cls
clus                              0  1
  DEL PEAK 21(16Q23.1) MUTATED    1 13
  DEL PEAK 21(16Q23.1) WILD-TYPE 12 52
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) MUTATED      1   13
  DEL PEAK 21(16Q23.1) WILD-TYPE   12   52
     clus
vv    DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  NO                             1                             12
  YES                           13                             52
D43V8, continuous
D43V9, continuous

Clustering(44) Variable = DEL PEAK 22(17P12) MUTATION ANALYSIS
D44V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 22(17P12) MUTATED   17  5
  DEL PEAK 22(17P12) WILD-TYPE 48  6
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          22                           54 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                           5                            6 
$`DEL PEAK 22(17P12) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VN 
        5.46        67.46        40.93        87.75         2.66        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A3L1 
        6.02         0.26        14.50         0.30        20.35         6.94 
TCGA-EX-A69M TCGA-FU-A3EO TCGA-FU-A3NI TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LK 
        6.08         2.17         1.45        66.81        78.67        26.56 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A5YI TCGA-Q1-A6DT 
        0.10         0.89         0.03         3.39 

$`DEL PEAK 22(17P12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF 
       49.48        30.41        11.44        36.56       177.04        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM 
       35.61         2.43        78.31        58.88        36.76        69.93 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 
        6.84         1.74         1.32         0.82         0.62        14.47 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A449 
        1.78         0.33         0.26         0.69         7.92        14.70 
TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ 
        4.44         1.22         1.22         0.99         0.07         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.79         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        21.67        20.78        14.93       147.35       124.27 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MU-A51Y 
      117.40        96.92        81.96        36.36         0.07        13.87 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
       29.72         0.07         4.34         3.72         3.68         5.72 

  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                        0.03                         0.07 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                       95.08                       177.04 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                        6.05                         6.28 
[1] "0.0 - 95.1 (6.0)"  "0.1 - 177.0 (6.3)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A3Y4 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EA-A5ZD 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A69L                   TCGA-EX-A69M 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-LP-A4AX                   TCGA-MU-A51Y 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MU-A5YI                   TCGA-MY-A5BD 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-Q1-A5R1                   TCGA-Q1-A6DT 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-Q1-A6DV                   TCGA-Q1-A6DW 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
[1] "hr=" "1.9"
D44V2, continuous
                              vv
clus                           T1 T2+T3+T4
  DEL PEAK 22(17P12) MUTATED   11        8
  DEL PEAK 22(17P12) WILD-TYPE 38       15
D44V3, multiclass
          clus
vv         DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  T1                               11                           38
  T2+T3+T4                          8                           15
D44V4, binary
                              cls
clus                            0  1
  DEL PEAK 22(17P12) MUTATED   13  5
  DEL PEAK 22(17P12) WILD-TYPE 36 16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) MUTATED     13    5
  DEL PEAK 22(17P12) WILD-TYPE   36   16
   clus
vv  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  0                         13                           36
  1                          5                           16
                              vv
clus                           M0 M1 MX
  DEL PEAK 22(17P12) MUTATED   15  0  5
  DEL PEAK 22(17P12) WILD-TYPE 30  2 21
D44V5, multiclass
    clus
vv   DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  M0                         15                           30
  M1                          0                            2
  MX                          5                           21
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 22(17P12) MUTATED                                 20
  DEL PEAK 22(17P12) WILD-TYPE                               46
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 22(17P12) MUTATED                                               0
  DEL PEAK 22(17P12) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 22(17P12) MUTATED                                     2
  DEL PEAK 22(17P12) WILD-TYPE                                   6
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 22(17P12) MUTATED                                           0
  DEL PEAK 22(17P12) WILD-TYPE                                         1
                              vv
clus                           MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 22(17P12) MUTATED                                              0
  DEL PEAK 22(17P12) WILD-TYPE                                            2
D44V6, multiclass
D44V7, binary
                              cls
clus                            0  1
  DEL PEAK 22(17P12) MUTATED    4 18
  DEL PEAK 22(17P12) WILD-TYPE  9 47
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) MUTATED      4   18
  DEL PEAK 22(17P12) WILD-TYPE    9   47
     clus
vv    DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  NO                           4                            9
  YES                         18                           47
D44V8, continuous
D44V9, continuous

Clustering(45) Variable = DEL PEAK 23(17Q25.3) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(17Q25.3) MUTATED    9  4
  DEL PEAK 23(17Q25.3) WILD-TYPE 56  7
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            13                             63 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                             4                              7 
$`DEL PEAK 23(17Q25.3) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR 
        5.46        40.93        36.76        95.08         0.26         1.32 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-HM-A4S6 TCGA-IR-A3LK TCGA-LP-A4AX 
        0.07         1.45         1.58        14.93        26.56         0.07 
TCGA-MU-A51Y 
       13.87 

$`DEL PEAK 23(17Q25.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13        35.61         2.43        78.31        87.75        58.88 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS 
        2.66        69.93         6.02         6.84         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.62        14.47        14.50         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.26         0.69        20.35         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        4.44         6.08         1.22         1.22         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.02         1.48         0.79         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       25.41        21.67        20.78       147.35       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU 
      117.40        96.92        78.67        81.96        36.36         0.10 
TCGA-LP-A4AW TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
        0.89         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.39         3.68         5.72 

  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                          5.46                           6.08 
[1] "0.1 - 95.1 (5.5)"  "0.0 - 177.0 (6.1)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
[1] "hr=" "3.5"
D45V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 23(17Q25.3) MUTATED    9        3
  DEL PEAK 23(17Q25.3) WILD-TYPE 40       20
D45V3, multiclass
          clus
vv         DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  T1                                  9                             40
  T2+T3+T4                            3                             20
D45V4, binary
                                cls
clus                              0  1
  DEL PEAK 23(17Q25.3) MUTATED    7  5
  DEL PEAK 23(17Q25.3) WILD-TYPE 42 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) MUTATED      7    5
  DEL PEAK 23(17Q25.3) WILD-TYPE   42   16
   clus
vv  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  0                            7                             42
  1                            5                             16
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(17Q25.3) MUTATED    7  0  5
  DEL PEAK 23(17Q25.3) WILD-TYPE 38  2 21
D45V5, multiclass
    clus
vv   DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  M0                            7                             38
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 23(17Q25.3) MUTATED                                 14
  DEL PEAK 23(17Q25.3) WILD-TYPE                               52
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 23(17Q25.3) MUTATED                                               0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 23(17Q25.3) MUTATED                                     0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 23(17Q25.3) MUTATED                                           0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 23(17Q25.3) MUTATED                                              0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                            2
D45V6, multiclass
D45V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(17Q25.3) MUTATED    2 12
  DEL PEAK 23(17Q25.3) WILD-TYPE 11 53
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) MUTATED      2   12
  DEL PEAK 23(17Q25.3) WILD-TYPE   11   53
     clus
vv    DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  NO                             2                             11
  YES                           12                             53
D45V8, continuous
D45V9, continuous

Clustering(46) Variable = DEL PEAK 24(18Q21.2) MUTATION ANALYSIS
D46V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(18Q21.2) MUTATED   15  4
  DEL PEAK 24(18Q21.2) WILD-TYPE 50  7
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            19                             57 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                             4                              7 
$`DEL PEAK 24(18Q21.2) MUTATED`
TCGA-C5-A1MI TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VN TCGA-EA-A1QT 
       35.61        40.93        78.31        87.75        95.08         0.26 
TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A3EO TCGA-HM-A3JJ TCGA-IR-A3LA 
        1.78         7.92         6.94         2.17        21.67       124.27 
TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-Q1-A5R1 
       66.81        78.67        81.96         0.89         0.07         3.72 
TCGA-Q1-A6DT 
        3.39 

$`DEL PEAK 24(18Q21.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       67.46        53.13         2.43        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       69.93         6.02         6.84         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.62        14.47        14.50         0.30         0.33         0.26 
TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        0.69        20.35        14.70         4.44         6.08         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         0.99         0.07         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LK 
       20.78        14.93       147.35       117.40        96.92        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36         0.10        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A6DV TCGA-Q1-A6DW 
        4.34         3.68         5.72 

  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                         21.67                           5.46 
[1] "0.1 - 124.3 (21.7)" "0.0 - 177.0 (5.5)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 24(18Q21.2) MUTATED   13        4
  DEL PEAK 24(18Q21.2) WILD-TYPE 36       19
D46V3, multiclass
          clus
vv         DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  T1                                 13                             36
  T2+T3+T4                            4                             19
D46V4, binary
                                cls
clus                              0  1
  DEL PEAK 24(18Q21.2) MUTATED   14  3
  DEL PEAK 24(18Q21.2) WILD-TYPE 35 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(18Q21.2) MUTATED     14    3
  DEL PEAK 24(18Q21.2) WILD-TYPE   35   18
   clus
vv  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  0                           14                             35
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(18Q21.2) MUTATED   12  1  5
  DEL PEAK 24(18Q21.2) WILD-TYPE 33  1 21
D46V5, multiclass
    clus
vv   DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  M0                           12                             33
  M1                            1                              1
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 24(18Q21.2) MUTATED                                 13
  DEL PEAK 24(18Q21.2) WILD-TYPE                               53
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 24(18Q21.2) MUTATED                                               0
  DEL PEAK 24(18Q21.2) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 24(18Q21.2) MUTATED                                     4
  DEL PEAK 24(18Q21.2) WILD-TYPE                                   4
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 24(18Q21.2) MUTATED                                           1
  DEL PEAK 24(18Q21.2) WILD-TYPE                                         0
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 24(18Q21.2) MUTATED                                              1
  DEL PEAK 24(18Q21.2) WILD-TYPE                                            1
D46V6, multiclass
D46V7, binary
                                cls
clus                              0  1
  DEL PEAK 24(18Q21.2) MUTATED    4 15
  DEL PEAK 24(18Q21.2) WILD-TYPE  9 50
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(18Q21.2) MUTATED      4   15
  DEL PEAK 24(18Q21.2) WILD-TYPE    9   50
     clus
vv    DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  NO                             4                              9
  YES                           15                             50
D46V8, continuous
D46V9, continuous

Clustering(47) Variable = DEL PEAK 25(19P13.3) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(19P13.3) MUTATED   13  4
  DEL PEAK 25(19P13.3) WILD-TYPE 52  7
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                            17                             59 
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                             4                              7 
$`DEL PEAK 25(19P13.3) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DS-A0VM 
       11.44         5.46        53.13        35.61        40.93        69.93 
TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
       95.08         6.84         0.26        14.47        14.50         1.78 
TCGA-EX-A69L TCGA-FU-A23L TCGA-HM-A4S6 TCGA-IR-A3LC TCGA-LP-A4AX 
        4.44         1.22        14.93       117.40         0.07 

$`DEL PEAK 25(19P13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK 
       49.48        30.41        36.56       177.04        67.46         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ 
       78.31        87.75        58.88        36.76         2.66         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        1.74         1.32         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.26         0.69        20.35         7.92         6.94        14.70 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.08         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.45         1.58         1.48         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LA 
        1.02        25.41        21.67        20.78       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81        96.92        78.67        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.89        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        4.34         3.72         3.39         3.68         5.72 

  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                        117.40                         177.04 
  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE 
                         14.47                           4.34 
[1] "0.1 - 117.4 (14.5)" "0.0 - 177.0 (4.3)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 25(19P13.3) MUTATED"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 25(19P13.3) MUTATED"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 25(19P13.3) MUTATED"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 25(19P13.3) MUTATED"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 25(19P13.3) MUTATED"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 25(19P13.3) MUTATED"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 25(19P13.3) WILD-TYPE"   "DEL PEAK 25(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 25(19P13.3) MUTATED" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 25(19P13.3) WILD-TYPE" "DEL PEAK 25(19P13.3) WILD-TYPE" 
[1] "hr=" "1.6"
D47V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 25(19P13.3) MUTATED   13        2
  DEL PEAK 25(19P13.3) WILD-TYPE 36       21
D47V3, multiclass
          clus
vv         DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  T1                                 13                             36
  T2+T3+T4                            2                             21
D47V4, binary
                                cls
clus                              0  1
  DEL PEAK 25(19P13.3) MUTATED   11  4
  DEL PEAK 25(19P13.3) WILD-TYPE 38 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(19P13.3) MUTATED     11    4
  DEL PEAK 25(19P13.3) WILD-TYPE   38   17
   clus
vv  DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  0                           11                             38
  1                            4                             17
                                vv
clus                             M0 M1 MX
  DEL PEAK 25(19P13.3) MUTATED   10  0  5
  DEL PEAK 25(19P13.3) WILD-TYPE 35  2 21
D47V5, multiclass
    clus
vv   DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  M0                           10                             35
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 25(19P13.3) MUTATED                                 18
  DEL PEAK 25(19P13.3) WILD-TYPE                               48
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 25(19P13.3) MUTATED                                               0
  DEL PEAK 25(19P13.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 25(19P13.3) MUTATED                                     0
  DEL PEAK 25(19P13.3) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 25(19P13.3) MUTATED                                           0
  DEL PEAK 25(19P13.3) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 25(19P13.3) MUTATED                                              0
  DEL PEAK 25(19P13.3) WILD-TYPE                                            2
D47V6, multiclass
D47V7, binary
                                cls
clus                              0  1
  DEL PEAK 25(19P13.3) MUTATED    5 13
  DEL PEAK 25(19P13.3) WILD-TYPE  8 52
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(19P13.3) MUTATED      5   13
  DEL PEAK 25(19P13.3) WILD-TYPE    8   52
     clus
vv    DEL PEAK 25(19P13.3) MUTATED DEL PEAK 25(19P13.3) WILD-TYPE
  NO                             5                              8
  YES                           13                             52
D47V8, continuous
D47V9, continuous

Clustering(48) Variable = DEL PEAK 26(19Q13.33) MUTATION ANALYSIS
D48V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 26(19Q13.33) MUTATED    9  0
  DEL PEAK 26(19Q13.33) WILD-TYPE 56 11
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                              9                              67 
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                              0                              11 
$`DEL PEAK 26(19Q13.33) MUTATED`
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-FU-A3NI TCGA-IR-A3LC TCGA-IR-A3LH 
       95.08         0.26         1.32         1.45       117.40        78.67 
TCGA-IR-A3LI TCGA-MY-A5BD TCGA-Q1-A6DT 
       81.96        29.72         3.39 

$`DEL PEAK 26(19Q13.33) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       87.75        58.88        36.76         2.66        69.93         6.02 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 
        6.84         1.74         0.82         0.62        14.47        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H5 
        1.78         0.30         0.33         0.26         0.69        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.44         6.08         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       21.67        20.78        14.93       147.35       124.27        66.81 
TCGA-IR-A3LF TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       96.92        26.56        36.36         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV 
       13.87         0.03         0.07         4.34         3.72         3.68 
TCGA-Q1-A6DW 
        5.72 

  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                           0.26                            0.03 
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                         117.40                          177.04 
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                          29.72                            6.02 
[1] "0.3 - 117.4 (29.7)" "0.0 - 177.0 (6.0)" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 26(19Q13.33) MUTATED"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 26(19Q13.33) MUTATED"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 26(19Q13.33) MUTATED" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 26(19Q13.33) MUTATED"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
"DEL PEAK 26(19Q13.33) WILD-TYPE"   "DEL PEAK 26(19Q13.33) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
[1] "hr="     "2.7e+08"
D48V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 26(19Q13.33) MUTATED    4        4
  DEL PEAK 26(19Q13.33) WILD-TYPE 45       19
D48V3, multiclass
          clus
vv         DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE
  T1                                   4                              45
  T2+T3+T4                             4                              19
D48V4, binary
                                 cls
clus                               0  1
  DEL PEAK 26(19Q13.33) MUTATED    6  2
  DEL PEAK 26(19Q13.33) WILD-TYPE 43 19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(19Q13.33) MUTATED      6    2
  DEL PEAK 26(19Q13.33) WILD-TYPE   43   19
   clus
vv  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE
  0                             6                              43
  1                             2                              19
                                 vv
clus                              M0 M1 MX
  DEL PEAK 26(19Q13.33) MUTATED    6  1  2
  DEL PEAK 26(19Q13.33) WILD-TYPE 39  1 24
D48V5, multiclass
    clus
vv   DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE
  M0                             6                              39
  M1                             1                               1
  MX                             2                              24
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 26(19Q13.33) MUTATED                                  8
  DEL PEAK 26(19Q13.33) WILD-TYPE                               58
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 26(19Q13.33) MUTATED                                               0
  DEL PEAK 26(19Q13.33) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 26(19Q13.33) MUTATED                                     1
  DEL PEAK 26(19Q13.33) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 26(19Q13.33) MUTATED                                           0
  DEL PEAK 26(19Q13.33) WILD-TYPE                                         1
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 26(19Q13.33) MUTATED                                              0
  DEL PEAK 26(19Q13.33) WILD-TYPE                                            2
D48V6, multiclass
D48V7, binary
                                 cls
clus                               0  1
  DEL PEAK 26(19Q13.33) MUTATED    1  8
  DEL PEAK 26(19Q13.33) WILD-TYPE 12 57
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(19Q13.33) MUTATED      1    8
  DEL PEAK 26(19Q13.33) WILD-TYPE   12   57
     clus
vv    DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE
  NO                              1                              12
  YES                             8                              57
D48V8, continuous
[1] "Remove cluster labels:"        "DEL PEAK 26(19Q13.33) MUTATED"
clus
  DEL PEAK 26(19Q13.33) MUTATED DEL PEAK 26(19Q13.33) WILD-TYPE 
                              1                              20 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MF 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MN 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A5RQ 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-FU-A2QG 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3EO                      TCGA-FU-A3HY 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TQ                      TCGA-FU-A3WB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-HM-A4S6 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3L7                      TCGA-IR-A3LB 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-Q1-A6DW 
"DEL PEAK 26(19Q13.33) WILD-TYPE" "DEL PEAK 26(19Q13.33) WILD-TYPE" 
D48V9, continuous

Clustering(49) Variable = DEL PEAK 27(20P12.1) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(20P12.1) MUTATED    8  3
  DEL PEAK 27(20P12.1) WILD-TYPE 57  8
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                            11                             65 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                             3                              8 
$`DEL PEAK 27(20P12.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-EA-A1QT TCGA-EA-A50E TCGA-EX-A1H6 TCGA-FU-A3EO 
       49.48       177.04         0.26         0.26         7.92         2.17 
TCGA-FU-A3HY TCGA-IR-A3LB TCGA-IR-A3LK TCGA-LP-A4AX TCGA-MU-A5YI 
        0.07        66.81        26.56         0.07         0.03 

$`DEL PEAK 27(20P12.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       36.76         2.66        69.93        95.08         6.02         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 
        1.74         1.32         0.82         0.62        14.47        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5ZD TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.78         0.30         0.33         0.69        20.35         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.44         6.08         1.22         1.22         0.99 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.02        25.41        21.67        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      147.35       124.27       117.40        96.92        78.67        81.96 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36         0.10         0.89        13.87        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        4.34         3.72         3.39         3.68         5.72 

  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                          0.03                           0.07 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                        177.04                         147.35 
  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE 
                          2.17                           6.08 
[1] "0.0 - 177.0 (2.2)" "0.1 - 147.3 (6.1)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 27(20P12.1) WILD-TYPE"   "DEL PEAK 27(20P12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
  "DEL PEAK 27(20P12.1) MUTATED" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 27(20P12.1) WILD-TYPE" "DEL PEAK 27(20P12.1) WILD-TYPE" 
[1] "hr=" "2.4"
D49V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 27(20P12.1) MUTATED    9        3
  DEL PEAK 27(20P12.1) WILD-TYPE 40       20
D49V3, multiclass
          clus
vv         DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  T1                                  9                             40
  T2+T3+T4                            3                             20
D49V4, binary
                                cls
clus                              0  1
  DEL PEAK 27(20P12.1) MUTATED    8  3
  DEL PEAK 27(20P12.1) WILD-TYPE 41 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(20P12.1) MUTATED      8    3
  DEL PEAK 27(20P12.1) WILD-TYPE   41   18
   clus
vv  DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  0                            8                             41
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 27(20P12.1) MUTATED    7  0  5
  DEL PEAK 27(20P12.1) WILD-TYPE 38  2 21
D49V5, multiclass
    clus
vv   DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  M0                            7                             38
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 27(20P12.1) MUTATED                                 10
  DEL PEAK 27(20P12.1) WILD-TYPE                               56
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 27(20P12.1) MUTATED                                               0
  DEL PEAK 27(20P12.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 27(20P12.1) MUTATED                                     3
  DEL PEAK 27(20P12.1) WILD-TYPE                                   5
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 27(20P12.1) MUTATED                                           0
  DEL PEAK 27(20P12.1) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 27(20P12.1) MUTATED                                              0
  DEL PEAK 27(20P12.1) WILD-TYPE                                            2
D49V6, multiclass
D49V7, binary
                                cls
clus                              0  1
  DEL PEAK 27(20P12.1) MUTATED    0 13
  DEL PEAK 27(20P12.1) WILD-TYPE 13 52
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(20P12.1) MUTATED      0   13
  DEL PEAK 27(20P12.1) WILD-TYPE   13   52
     clus
vv    DEL PEAK 27(20P12.1) MUTATED DEL PEAK 27(20P12.1) WILD-TYPE
  NO                             0                             13
  YES                           13                             52
D49V8, continuous
D49V9, continuous

Clustering(50) Variable = DEL PEAK 28(21Q21.1) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(21Q21.1) MUTATED   10  4
  DEL PEAK 28(21Q21.1) WILD-TYPE 55  7
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                            14                             62 
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                             4                              7 
$`DEL PEAK 28(21Q21.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-EA-A1QT TCGA-EA-A3HR 
       30.41        11.44        87.75         2.66         0.26         1.32 
TCGA-EA-A439 TCGA-EA-A50E TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
       14.50         0.26         6.94         1.22         0.07         1.45 
TCGA-HM-A3JJ TCGA-IR-A3LB 
       21.67        66.81 

$`DEL PEAK 28(21Q21.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        40.93        78.31        58.88        36.76 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS 
       69.93        95.08         6.02         6.84         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5ZD 
        0.62        14.47         1.78         0.30         0.33         0.69 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
       20.35         7.92        14.70         4.44         6.08         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.99         2.17         1.02         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 
        3.48         1.35         1.02        25.41        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      147.35       124.27       117.40        96.92        78.67        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        36.36         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT 
        0.03        29.72         0.07         4.34         3.72         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.68         5.72 

  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                         87.75                         177.04 
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                          4.80                           6.05 
[1] "0.1 - 87.8 (4.8)"  "0.0 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 28(21Q21.1) MUTATED" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 28(21Q21.1) WILD-TYPE"   "DEL PEAK 28(21Q21.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
[1] "hr=" "3.6"
D50V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 28(21Q21.1) MUTATED    9        5
  DEL PEAK 28(21Q21.1) WILD-TYPE 40       18
D50V3, multiclass
          clus
vv         DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  T1                                  9                             40
  T2+T3+T4                            5                             18
D50V4, binary
                                cls
clus                              0  1
  DEL PEAK 28(21Q21.1) MUTATED    9  5
  DEL PEAK 28(21Q21.1) WILD-TYPE 40 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(21Q21.1) MUTATED      9    5
  DEL PEAK 28(21Q21.1) WILD-TYPE   40   16
   clus
vv  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  0                            9                             40
  1                            5                             16
                                vv
clus                             M0 M1 MX
  DEL PEAK 28(21Q21.1) MUTATED    9  0  5
  DEL PEAK 28(21Q21.1) WILD-TYPE 36  2 21
D50V5, multiclass
    clus
vv   DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  M0                            9                             36
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 28(21Q21.1) MUTATED                                 13
  DEL PEAK 28(21Q21.1) WILD-TYPE                               53
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 28(21Q21.1) MUTATED                                               0
  DEL PEAK 28(21Q21.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 28(21Q21.1) MUTATED                                     1
  DEL PEAK 28(21Q21.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 28(21Q21.1) MUTATED                                           0
  DEL PEAK 28(21Q21.1) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 28(21Q21.1) MUTATED                                              0
  DEL PEAK 28(21Q21.1) WILD-TYPE                                            2
D50V6, multiclass
D50V7, binary
                                cls
clus                              0  1
  DEL PEAK 28(21Q21.1) MUTATED    2 12
  DEL PEAK 28(21Q21.1) WILD-TYPE 11 53
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(21Q21.1) MUTATED      2   12
  DEL PEAK 28(21Q21.1) WILD-TYPE   11   53
     clus
vv    DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  NO                             2                             11
  YES                           12                             53
D50V8, continuous
[1] "Remove cluster labels:"       "DEL PEAK 28(21Q21.1) MUTATED"
clus
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                             2                             19 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A5RQ 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3TQ 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-MU-A5YI 
"DEL PEAK 28(21Q21.1) WILD-TYPE" "DEL PEAK 28(21Q21.1) WILD-TYPE" 
                    TCGA-Q1-A6DW 
"DEL PEAK 28(21Q21.1) WILD-TYPE" 
D50V9, continuous

Clustering(51) Variable = DEL PEAK 29(22Q13.32) MUTATION ANALYSIS
D51V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 29(22Q13.32) MUTATED   14  4
  DEL PEAK 29(22Q13.32) WILD-TYPE 51  7
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             18                              58 
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                              4                               7 
$`DEL PEAK 29(22Q13.32) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
        5.46        40.93        95.08         0.26         1.32        14.50 
TCGA-EA-A44S TCGA-EX-A1H5 TCGA-FU-A23K TCGA-FU-A3HY TCGA-HM-A3JJ TCGA-HM-A4S6 
        0.30        20.35         1.22         0.07        21.67        14.93 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-LP-A4AW TCGA-Q1-A5R1 TCGA-Q1-A6DT 
      124.27        66.81       117.40         0.89         3.72         3.39 

$`DEL PEAK 29(22Q13.32) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13        35.61         2.43        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ 
       36.76         2.66        69.93         6.02         6.84         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         0.62        14.47         1.78         0.33         0.26 
TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
        0.69         7.92         6.94        14.70         4.44         6.08 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         0.99         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       20.78       147.35        96.92        78.67        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
       36.36         0.10         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         3.68         5.72 

  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                         124.27                          177.04 
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                           9.98                            6.05 
[1] "0.1 - 124.3 (10.0)" "0.0 - 177.0 (6.0)" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A3Y4 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A439                      TCGA-EA-A43B 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A44S                      TCGA-EA-A4BA 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A50E                      TCGA-EA-A5ZD 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A69L                      TCGA-EX-A69M 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 29(22Q13.32) MUTATED" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 29(22Q13.32) WILD-TYPE"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MU-A51Y 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-MU-A5YI                      TCGA-MY-A5BD 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
                     TCGA-Q1-A5R1                      TCGA-Q1-A6DT 
  "DEL PEAK 29(22Q13.32) MUTATED"   "DEL PEAK 29(22Q13.32) MUTATED" 
                     TCGA-Q1-A6DV                      TCGA-Q1-A6DW 
"DEL PEAK 29(22Q13.32) WILD-TYPE" "DEL PEAK 29(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.7"
D51V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 29(22Q13.32) MUTATED   11        4
  DEL PEAK 29(22Q13.32) WILD-TYPE 38       19
D51V3, multiclass
          clus
vv         DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  T1                                  11                              38
  T2+T3+T4                             4                              19
D51V4, binary
                                 cls
clus                               0  1
  DEL PEAK 29(22Q13.32) MUTATED    9  6
  DEL PEAK 29(22Q13.32) WILD-TYPE 40 15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 29(22Q13.32) MUTATED      9    6
  DEL PEAK 29(22Q13.32) WILD-TYPE   40   15
   clus
vv  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  0                             9                              40
  1                             6                              15
                                 vv
clus                              M0 M1 MX
  DEL PEAK 29(22Q13.32) MUTATED    9  0  7
  DEL PEAK 29(22Q13.32) WILD-TYPE 36  2 19
D51V5, multiclass
    clus
vv   DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  M0                             9                              36
  M1                             0                               2
  MX                             7                              19
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 29(22Q13.32) MUTATED                                 15
  DEL PEAK 29(22Q13.32) WILD-TYPE                               51
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 29(22Q13.32) MUTATED                                               0
  DEL PEAK 29(22Q13.32) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 29(22Q13.32) MUTATED                                     1
  DEL PEAK 29(22Q13.32) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 29(22Q13.32) MUTATED                                           1
  DEL PEAK 29(22Q13.32) WILD-TYPE                                         0
                                 vv
clus                              MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 29(22Q13.32) MUTATED                                              1
  DEL PEAK 29(22Q13.32) WILD-TYPE                                            1
D51V6, multiclass
D51V7, binary
                                 cls
clus                               0  1
  DEL PEAK 29(22Q13.32) MUTATED    4 14
  DEL PEAK 29(22Q13.32) WILD-TYPE  9 51
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 29(22Q13.32) MUTATED      4   14
  DEL PEAK 29(22Q13.32) WILD-TYPE    9   51
     clus
vv    DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  NO                              4                               9
  YES                            14                              51
D51V8, continuous
D51V9, continuous

Clustering(52) Variable = DEL PEAK 30(XP11.3) MUTATION ANALYSIS
D52V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 30(XP11.3) MUTATED   17  5
  DEL PEAK 30(XP11.3) WILD-TYPE 48  6
  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                           22                            54 
  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                            5                             6 
$`DEL PEAK 30(XP11.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MN 
       30.41        11.44       177.04         5.46        53.13        40.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B TCGA-EA-A44S 
       95.08         6.02         0.26         1.32         1.78         0.30 
TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-IR-A3LA TCGA-IR-A3LB 
       20.35         0.99         0.07         1.45       124.27        66.81 
TCGA-IR-A3LK TCGA-LP-A4AW TCGA-MY-A5BF TCGA-Q1-A6DT 
       26.56         0.89         4.34         3.39 

$`DEL PEAK 30(XP11.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        36.56        67.46        35.61         2.43        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A5RQ 
       87.75        58.88        36.76         2.66        69.93         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A4BA 
        1.74         0.82         0.62        14.47        14.50         0.33 
TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.26         0.69         7.92         6.94        14.70         4.44 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ 
        6.08         1.22         1.22         2.17         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF 
       21.67        20.78        14.93       147.35       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y 
       78.67        81.96        36.36         0.10         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.03        29.72         0.07         3.72         3.68         5.72 

  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                       177.04                        147.35 
  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE 
                         5.74                          6.46 
[1] "0.1 - 177.0 (5.7)" "0.0 - 147.3 (6.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 30(XP11.3) MUTATED"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK 30(XP11.3) MUTATED"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 30(XP11.3) MUTATED"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK 30(XP11.3) MUTATED"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 30(XP11.3) MUTATED"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A3Y4 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A439                    TCGA-EA-A43B 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-EA-A44S                    TCGA-EA-A4BA 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EA-A50E                    TCGA-EA-A5ZD 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-EX-A69L                    TCGA-EX-A69M 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK 30(XP11.3) MUTATED"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK 30(XP11.3) MUTATED" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MU-A51Y 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-MU-A5YI                    TCGA-MY-A5BD 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-Q1-A5R1                    TCGA-Q1-A6DT 
"DEL PEAK 30(XP11.3) WILD-TYPE"   "DEL PEAK 30(XP11.3) MUTATED" 
                   TCGA-Q1-A6DV                    TCGA-Q1-A6DW 
"DEL PEAK 30(XP11.3) WILD-TYPE" "DEL PEAK 30(XP11.3) WILD-TYPE" 
[1] "hr=" "1.9"
D52V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK 30(XP11.3) MUTATED   14        5
  DEL PEAK 30(XP11.3) WILD-TYPE 35       18
D52V3, multiclass
          clus
vv         DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE
  T1                                14                            35
  T2+T3+T4                           5                            18
D52V4, binary
                               cls
clus                             0  1
  DEL PEAK 30(XP11.3) MUTATED   13  6
  DEL PEAK 30(XP11.3) WILD-TYPE 36 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 30(XP11.3) MUTATED     13    6
  DEL PEAK 30(XP11.3) WILD-TYPE   36   15
   clus
vv  DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE
  0                          13                            36
  1                           6                            15
                               vv
clus                            M0 M1 MX
  DEL PEAK 30(XP11.3) MUTATED   11  0  8
  DEL PEAK 30(XP11.3) WILD-TYPE 34  2 18
D52V5, multiclass
    clus
vv   DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE
  M0                          11                            34
  M1                           0                             2
  MX                           8                            18
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 30(XP11.3) MUTATED                                 20
  DEL PEAK 30(XP11.3) WILD-TYPE                               46
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 30(XP11.3) MUTATED                                               0
  DEL PEAK 30(XP11.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 30(XP11.3) MUTATED                                     1
  DEL PEAK 30(XP11.3) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 30(XP11.3) MUTATED                                           1
  DEL PEAK 30(XP11.3) WILD-TYPE                                         0
                               vv
clus                            MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 30(XP11.3) MUTATED                                              0
  DEL PEAK 30(XP11.3) WILD-TYPE                                            2
D52V6, multiclass
D52V7, binary
                               cls
clus                             0  1
  DEL PEAK 30(XP11.3) MUTATED    6 16
  DEL PEAK 30(XP11.3) WILD-TYPE  7 49
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 30(XP11.3) MUTATED      6   16
  DEL PEAK 30(XP11.3) WILD-TYPE    7   49
     clus
vv    DEL PEAK 30(XP11.3) MUTATED DEL PEAK 30(XP11.3) WILD-TYPE
  NO                            6                             7
  YES                          16                            49
D52V8, continuous
D52V9, continuous

Clustering(53) Variable = DEL PEAK 31(XQ21.33) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(XQ21.33) MUTATED    9  6
  DEL PEAK 31(XQ21.33) WILD-TYPE 56  5
  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                            15                             61 
  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                             6                              5 
$`DEL PEAK 31(XQ21.33) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN 
       11.44        67.46         2.43        40.93        36.76        95.08 
TCGA-EA-A1QT TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A69M TCGA-FU-A2QG 
        0.26         0.30        20.35         7.92         6.08         0.99 
TCGA-FU-A3HY TCGA-IR-A3LK TCGA-MY-A5BF 
        0.07        26.56         4.34 

$`DEL PEAK 31(XQ21.33) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04         5.46        53.13 
TCGA-C5-A1MI TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
       35.61        78.31        87.75        58.88         2.66        69.93 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.02         6.84         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5ZD 
       14.47        14.50         1.78         0.33         0.26         0.69 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO 
        6.94        14.70         4.44         1.22         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.02        25.41        21.67        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.35       124.27        66.81       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        36.36         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.03        29.72         0.07         3.72         3.39         3.68 
TCGA-Q1-A6DW 
        5.72 

  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE 
                          7.92                           5.72 
[1] "0.1 - 95.1 (7.9)"  "0.0 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 31(XQ21.33) MUTATED"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 31(XQ21.33) MUTATED"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A3Y4 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A439                     TCGA-EA-A43B 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A44S                     TCGA-EA-A4BA 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A50E                     TCGA-EA-A5ZD 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 31(XQ21.33) MUTATED"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A69L                     TCGA-EX-A69M 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 31(XQ21.33) MUTATED" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MU-A51Y 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-MU-A5YI                     TCGA-MY-A5BD 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 31(XQ21.33) WILD-TYPE"   "DEL PEAK 31(XQ21.33) MUTATED" 
                    TCGA-Q1-A5R1                     TCGA-Q1-A6DT 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
                    TCGA-Q1-A6DV                     TCGA-Q1-A6DW 
"DEL PEAK 31(XQ21.33) WILD-TYPE" "DEL PEAK 31(XQ21.33) WILD-TYPE" 
[1] "hr=" "5"  
D53V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 31(XQ21.33) MUTATED   10        3
  DEL PEAK 31(XQ21.33) WILD-TYPE 39       20
D53V3, multiclass
          clus
vv         DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE
  T1                                 10                             39
  T2+T3+T4                            3                             20
D53V4, binary
                                cls
clus                              0  1
  DEL PEAK 31(XQ21.33) MUTATED    8  5
  DEL PEAK 31(XQ21.33) WILD-TYPE 41 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(XQ21.33) MUTATED      8    5
  DEL PEAK 31(XQ21.33) WILD-TYPE   41   16
   clus
vv  DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE
  0                            8                             41
  1                            5                             16
                                vv
clus                             M0 M1 MX
  DEL PEAK 31(XQ21.33) MUTATED    7  0  5
  DEL PEAK 31(XQ21.33) WILD-TYPE 38  2 21
D53V5, multiclass
    clus
vv   DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE
  M0                            7                             38
  M1                            0                              2
  MX                            5                             21
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 31(XQ21.33) MUTATED                                 14
  DEL PEAK 31(XQ21.33) WILD-TYPE                               52
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 31(XQ21.33) MUTATED                                               0
  DEL PEAK 31(XQ21.33) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 31(XQ21.33) MUTATED                                     1
  DEL PEAK 31(XQ21.33) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 31(XQ21.33) MUTATED                                           0
  DEL PEAK 31(XQ21.33) WILD-TYPE                                         1
                                vv
clus                             MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  DEL PEAK 31(XQ21.33) MUTATED                                              0
  DEL PEAK 31(XQ21.33) WILD-TYPE                                            2
D53V6, multiclass
D53V7, binary
                                cls
clus                              0  1
  DEL PEAK 31(XQ21.33) MUTATED    4 11
  DEL PEAK 31(XQ21.33) WILD-TYPE  9 54
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(XQ21.33) MUTATED      4   11
  DEL PEAK 31(XQ21.33) WILD-TYPE    9   54
     clus
vv    DEL PEAK 31(XQ21.33) MUTATED DEL PEAK 31(XQ21.33) WILD-TYPE
  NO                             4                              9
  YES                           11                             54
D53V8, continuous
D53V9, continuous
> q(save="no")
