
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COAD-TP/6159716/COAD-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/COAD-TP/6154417/COAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=COAD-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=COAD-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/COAD-TP/6154417/COAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COAD-TP/6159716/COAD-TP.mergedcluster.txt"

nPatients in clinical file=434, in cluster file=436, common to both=433
[1]  12 433
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
38 61 30 24 
 1  2  3  4 
38 61 30 24 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
57 46 50 
 1  2  3 
57 46 50 
[1] "CN_CNMF"
[1] 3
  1   2   3 
170 194  60 
  1   2   3 
170 194  60 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
113  88  68 
  1   2   3 
113  88  68 
[1] "RPPA_CNMF"
[1] 3
  1   2   3   4 
 80 128  27  96 
  1   2   3   4 
 80 128  27  96 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3   4 
 29  57  64 181 
  1   2   3   4 
 29  57  64 181 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
132 133 150 
  1   2   3 
132 133 150 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
172 144  99 
  1   2   3 
172 144  99 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
160  66 180 
  1   2   3 
160  66 180 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 81 182 143 
  1   2   3 
 81 182 143 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
79 78 63 
 1  2  3 
79 78 63 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
 21  86 113 
  1   2   3 
 21  86 113 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE"                         
[19] "PSA_VALUE"                             
[20] "DAYS_TO_PSA"                           
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 433 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2675 TCGA-A6-2676 TCGA-A6-2677 
        1125          696          761          846          711          541 
TCGA-A6-2678 TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 TCGA-A6-2682 TCGA-A6-2683 
         781          778          704          671           NA          504 
TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-2686 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3809 
         387          464          488          332          278          313 
TCGA-A6-3810 TCGA-A6-4105 TCGA-A6-4107 TCGA-A6-5656 TCGA-A6-5657 TCGA-A6-5659 
         246           NA          231          462          367          286 
TCGA-A6-5660 TCGA-A6-5661 TCGA-A6-5662 TCGA-A6-5664 TCGA-A6-5665 TCGA-A6-5666 
         342          306          453          362          404          719 
TCGA-A6-5667 TCGA-A6-6137 TCGA-A6-6138 TCGA-A6-6140 TCGA-A6-6141 TCGA-A6-6142 
         320          348          279          356          254          368 
TCGA-A6-6648 TCGA-A6-6649 TCGA-A6-6650 TCGA-A6-6651 TCGA-A6-6652 TCGA-A6-6653 
         344          328          277          258          455          282 
TCGA-A6-6654 TCGA-A6-6780 TCGA-A6-6781 TCGA-A6-6782 TCGA-A6-A565 TCGA-A6-A566 
         399          354          293          189           NA           NA 
TCGA-A6-A567 TCGA-A6-A56B TCGA-A6-A5ZU TCGA-AA-3488 TCGA-AA-3489 TCGA-AA-3492 
          NA         1595          116           NA           31           NA 
TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3496 TCGA-AA-3502 TCGA-AA-3506 TCGA-AA-3509 
          31           31           31           31           NA           NA 
TCGA-AA-3510 TCGA-AA-3511 TCGA-AA-3514 TCGA-AA-3516 TCGA-AA-3517 TCGA-AA-3518 
          31           NA           NA           NA           NA           31 
TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 TCGA-AA-3524 TCGA-AA-3525 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 TCGA-AA-3531 TCGA-AA-3532 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 TCGA-AA-3544 TCGA-AA-3548 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 TCGA-AA-3555 TCGA-AA-3556 
          NA           NA           NA           NA           30           NA 
TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 TCGA-AA-3655 TCGA-AA-3660 
          NA           NA           NA           31           NA           31 
TCGA-AA-3662 TCGA-AA-3663 TCGA-AA-3664 TCGA-AA-3666 TCGA-AA-3667 TCGA-AA-3672 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3673 TCGA-AA-3675 TCGA-AA-3678 TCGA-AA-3679 TCGA-AA-3680 TCGA-AA-3681 
          NA           31           NA           30           NA           NA 
TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 TCGA-AA-3692 TCGA-AA-3693 TCGA-AA-3695 
          NA           30           NA           NA           NA           NA 
TCGA-AA-3696 TCGA-AA-3697 TCGA-AA-3710 TCGA-AA-3712 TCGA-AA-3713 TCGA-AA-3715 
          NA           29           31           NA           29           30 
TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3815 TCGA-AA-3818 TCGA-AA-3819 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3821 TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 TCGA-AA-3841 TCGA-AA-3842 
          NA           NA           NA           31           NA           31 
TCGA-AA-3844 TCGA-AA-3845 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3850 TCGA-AA-3851 
          28           NA           30           30           NA           NA 
TCGA-AA-3852 TCGA-AA-3854 TCGA-AA-3855 TCGA-AA-3856 TCGA-AA-3858 TCGA-AA-3860 
          NA           31           NA           30           NA           NA 
TCGA-AA-3861 TCGA-AA-3862 TCGA-AA-3864 TCGA-AA-3866 TCGA-AA-3867 TCGA-AA-3869 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 TCGA-AA-3930 TCGA-AA-3939 
          NA           NA           NA           30           NA           30 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 TCGA-AA-3955 
          31           30           30           31           NA           NA 
TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3968 TCGA-AA-3970 TCGA-AA-3971 TCGA-AA-3972 
          NA           61           NA           NA           NA           NA 
TCGA-AA-3973 TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 TCGA-AA-3979 TCGA-AA-3980 
          NA           30           NA           31           NA           NA 
TCGA-AA-3982 TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 TCGA-AA-3994 TCGA-AA-A004 
          NA           NA           30           NA           NA          424 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
         548          578          913         1035          548          548 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
         517           NA          822          822           30          517 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01C TCGA-AA-A01D 
         456          669          638          457          457           30 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
         396          365          365          396           NA           31 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1065           31         1005         1065          791          638 
TCGA-AA-A022 TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H 
          NA           NA         1580           NA         1215           NA 
TCGA-AA-A02J TCGA-AA-A02K TCGA-AA-A02O TCGA-AA-A02R TCGA-AA-A02W TCGA-AA-A02Y 
          NA           NA           28           NA         1246         1215 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AD-5900 TCGA-AD-6548 TCGA-AD-6888 TCGA-AD-6889 
          NA         1245            2            3          128         1719 
TCGA-AD-6890 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 TCGA-AD-6963 TCGA-AD-6964 
          24           22           47           31            3           30 
TCGA-AD-6965 TCGA-AD-A5EK TCGA-AM-5820 TCGA-AM-5821 TCGA-AU-3779 TCGA-AU-6004 
           6           13           14           28          440          203 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AY-5543 TCGA-AY-6196 TCGA-AY-6197 TCGA-AY-6386 
          NA           NA          479            6          423          360 
TCGA-AY-A54L TCGA-AZ-4308 TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-4614 
         158         2288         1532         1776           NA           NA 
TCGA-AZ-4615 TCGA-AZ-4616 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 TCGA-AZ-5403 
        1002           NA         2549           NA         1977           NA 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6603 
        1868           NA           NA           NA           NA           NA 
TCGA-AZ-6605 TCGA-AZ-6606 TCGA-AZ-6607 TCGA-AZ-6608 TCGA-CA-5254 TCGA-CA-5255 
          NA           NA           NA           NA           68           93 
TCGA-CA-5256 TCGA-CA-5796 TCGA-CA-5797 TCGA-CA-6715 TCGA-CA-6716 TCGA-CA-6717 
          65           99          100            2            8           10 
TCGA-CA-6718 TCGA-CA-6719 TCGA-CK-4947 TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4951 
           3           41          533         3116         1226         2134 
TCGA-CK-4952 TCGA-CK-5912 TCGA-CK-5913 TCGA-CK-5914 TCGA-CK-5915 TCGA-CK-5916 
         474         1461          853          669           NA           NA 
TCGA-CK-6746 TCGA-CK-6747 TCGA-CK-6748 TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4744 
          NA           89           61         3775          184          214 
TCGA-CM-4746 TCGA-CM-4747 TCGA-CM-4748 TCGA-CM-4750 TCGA-CM-4751 TCGA-CM-4752 
         699          244          214          244          607          123 
TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5860 TCGA-CM-5861 
         579          488          668          579          487          457 
TCGA-CM-5862 TCGA-CM-5863 TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6161 TCGA-CM-6162 
          NA          457          457          518          457          365 
TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6167 TCGA-CM-6168 
         427          883          488          668          456          395 
TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6171 TCGA-CM-6172 TCGA-CM-6674 TCGA-CM-6675 
         396          457          427          334          394          396 
TCGA-CM-6676 TCGA-CM-6677 TCGA-CM-6678 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5537 
         337          337          335          306          366          456 
TCGA-D5-5538 TCGA-D5-5539 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6529 TCGA-D5-6530 
         373          596          411          350          614          621 
TCGA-D5-6531 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6534 TCGA-D5-6535 TCGA-D5-6536 
         540          555           40          241          460          543 
TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6898 
         136          521          380          491          474          229 
TCGA-D5-6920 TCGA-D5-6922 TCGA-D5-6923 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6927 
         377          308          377          434          275          287 
TCGA-D5-6928 TCGA-D5-6929 TCGA-D5-6930 TCGA-D5-6931 TCGA-D5-6932 TCGA-D5-7000 
         354          407           45          365           19          312 
TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D6 
        3641          743         1162         3974         2821         1518 
TCGA-DM-A1D7 TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1DB TCGA-DM-A1HA 
         404          383         4270          227         1348         4000 
TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A282 TCGA-DM-A285 TCGA-DM-A288 TCGA-DM-A28A 
        4126          235         4233          185          426          805 
TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28G TCGA-DM-A28H TCGA-DM-A28K 
        2475         3648         1094         1849         3561         2988 
TCGA-DM-A28M TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6461 TCGA-F4-6463 TCGA-F4-6569 
        2895           NA          407           NA          414          408 
TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6806 TCGA-F4-6807 
          NA          298           46           16           20           16 
TCGA-F4-6808 TCGA-F4-6809 TCGA-F4-6854 TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6293 
          14           38           16          300           20         3275 
TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6299 TCGA-G4-6302 
          NA          254         2506           NA         2268         1309 
TCGA-G4-6303 TCGA-G4-6304 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6309 TCGA-G4-6310 
        1882         1631         1358         1674         1574         1372 
TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 TCGA-G4-6317 TCGA-G4-6320 TCGA-G4-6321 
        1199         1093         1117         1095          804          671 
TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6625 TCGA-G4-6626 
         792          419         1089          796         2791           NA 
TCGA-G4-6627 TCGA-G4-6628 TCGA-NH-A50T TCGA-NH-A50V TCGA-QG-A5YV TCGA-QG-A5YX 
        1434         1611          125          154          820          526 
TCGA-QG-A5Z2 
         449 
Variable 1:'AGE':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=62,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=215,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=21,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 433 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=58, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=5, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T0  T1  T2  T3  T4 
  1  10  76 296  49 
[1] "table(vv)"
vv
T0+T1    T2    T3    T4 
   11    76   296    49 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T0  T1  T2  T3  T4 
  1  10  76 296  49 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T0+T1    T2    T3    T4 
   11    76   296    49 
PATHOLOGY.N.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2 
256 101  75 
[1] "table(vv)"
vv
 N0  N1  N2 
256 101  75 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2 
256 101  75 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 N0  N1  N2 
256 101  75 
PATHOLOGY.M.STAGE, nv=5, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=21, binary=FALSE, numeric=TRUE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 23  1
  subtype2 19  8
  subtype3 13  3
  subtype4  7  1
subtype1 subtype2 subtype3 subtype4 
      24       27       16        8 
subtype1 subtype2 subtype3 subtype4 
       1        8        3        1 
$subtype1
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3809 TCGA-A6-3810 
       22.88        25.02        23.38         9.14        10.29         8.09 
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3877 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00A 
        0.99         0.99         1.02         2.01         1.02        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A02R 
       19.00        30.02        18.02         0.99         0.99        22.03 

$subtype2
TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 TCGA-AA-3562 TCGA-AA-3666 
       17.79        25.68        16.57        10.92         1.02         2.01 
TCGA-AA-3679 TCGA-AA-3837 TCGA-AA-3848 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-A00F 
        0.99         1.02         0.99         2.01         0.99        34.03 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       17.00        27.02        27.02        14.99        21.99        15.02 
TCGA-AA-A01C TCGA-AA-A01F TCGA-AA-A01K TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H 
       15.02        13.02        13.02         2.93        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 
        5.03        40.96        16.31 

$subtype3
TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3675 TCGA-AA-3818 TCGA-AA-3854 TCGA-AA-3941 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-A004 TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01G 
       13.94        18.02         4.01        17.00        20.98        12.00 
TCGA-AA-A01I TCGA-AA-A01Q TCGA-AA-A024 TCGA-AA-A029 
       12.00         1.02        39.06        51.95 

$subtype4
TCGA-AA-3685 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3856 TCGA-AA-3862 TCGA-AA-3939 
        0.99         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3986 TCGA-AY-4071 
        0.99         0.95 

subtype1 subtype2 subtype3 subtype4 
    0.99     0.99     0.99     0.92 
subtype1 subtype2 subtype3 subtype4 
   30.02    40.96    51.95     1.02 
subtype1 subtype2 subtype3 subtype4 
   1.515   14.990    8.005    0.990 
[1] "1.0 - 30.0 (1.5)"  "1.0 - 41.0 (15.0)" "1.0 - 52.0 (8.0)" 
[4] "0.9 - 1.0 (1.0)"  
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[25] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[31] "subtype1" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[73] "subtype2" "subtype2" "subtype4"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[25] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[31] "subtype1" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[73] "subtype2" "subtype2" "subtype4"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[25] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[31] "subtype1" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[73] "subtype2" "subtype2" "subtype4"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE IIA STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  subtype1       6        1        14         3         3          1          3
  subtype2      11        2        12         0         2          2          5
  subtype3       7        6         9         2         1          0          3
  subtype4       5        3        10         0         2          0          1
          vv
clus       STAGE IIIC STAGE IV STAGE IVA
  subtype1          1        5         0
  subtype2         13       14         0
  subtype3          0        1         1
  subtype4          2        1         0
D1V3, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     1  7 24  6
  subtype2     2 12 42  5
  subtype3     0  7 19  4
  subtype4     1  5 18  0
D1V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 25  5  8
  subtype2 27 15 19
  subtype3 24  5  1
  subtype4 18  3  3
D1V5, multiclass
          vv
clus       M0 M1 M1A
  subtype1 32  5   0
  subtype2 47 14   0
  subtype3 28  1   1
  subtype4 22  1   0
D1V6, multiclass
D1V7, binary
          cls
clus        0  1
  subtype1 25 13
  subtype2 31 30
  subtype3 10 20
  subtype4  9 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   13
  subtype2   31   30
  subtype3   10   20
  subtype4    9   15
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       25       31       10        9
  MALE         13       30       20       15
D1V8, binary
          cls
clus        0  1
  subtype1 25 13
  subtype2 60  1
  subtype3 22  7
  subtype4 22  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   13
  subtype2   60    1
  subtype3   22    7
  subtype4   22    1
                               clus
vv                              subtype1 subtype2 subtype3 subtype4
  COLON ADENOCARCINOMA                25       60       22       22
  COLON MUCINOUS ADENOCARCINOMA       13        1        7        1
D1V9, binary
          cls
clus        0
  subtype1 38
  subtype2 61
  subtype3 30
  subtype4 24
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus       R0 R1 R2
  subtype1 32  0  3
  subtype2 47  1 13
  subtype3 28  0  2
  subtype4 21  0  1
D1V10, multiclass
D1V11, continuous

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 24  9
  subtype2 26  2
  subtype3 12  2
subtype1 subtype2 subtype3 
      33       28       14 
subtype1 subtype2 subtype3 
       9        2        2 
$subtype1
TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3666 TCGA-AA-3675 TCGA-AA-3818 TCGA-AA-3837 
       17.79        16.57         2.01         1.02         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-A004 TCGA-AA-A00K 
        0.92         0.99         0.99         1.02        13.94        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01C TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H 
       13.02        39.06        51.95         2.93        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 
        5.03        40.96        16.31 

$subtype2
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3809 TCGA-AA-3518 
       22.88        25.02        23.38         9.14        10.29         1.02 
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         1.02         2.01 
TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00N 
        1.02        18.02        19.00        30.02        18.02         4.01 
TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A01Q TCGA-AA-A02R 
        0.99         0.99         1.02        22.03 

$subtype3
TCGA-A6-2678 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 
       25.68        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3846 TCGA-AA-3856 TCGA-AA-3862 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         2.01         0.99         0.99 
TCGA-AA-A00F TCGA-AY-4071 
       34.03         0.95 

subtype1 subtype2 subtype3 
    0.92     0.99     0.95 
subtype1 subtype2 subtype3 
   51.95    30.02    34.03 
subtype1 subtype2 subtype3 
  14.990    1.020    1.005 
[1] "0.9 - 52.0 (15.0)" "1.0 - 30.0 (1.0)"  "0.9 - 34.0 (1.0)" 
 [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[31] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[73] "subtype1" "subtype1" "subtype3"
 [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[31] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[73] "subtype1" "subtype1" "subtype3"
 [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[31] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[73] "subtype1" "subtype1" "subtype3"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE IIA STAGE IIB STAGE III STAGE IIIA STAGE IIIB
  subtype1       7        7        16         1         3          2          3
  subtype2       9        3        14         4         3          1          5
  subtype3      13        2        15         0         2          0          4
          vv
clus       STAGE IIIC STAGE IV STAGE IVA
  subtype1          9        8         1
  subtype2          1        5         0
  subtype3          6        8         0
D2V3, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     1  8 43  5
  subtype2     1 10 28  7
  subtype3     2 13 32  3
D2V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 33 13 11
  subtype2 31  7  8
  subtype3 30  8 12
D2V5, multiclass
          vv
clus       M0 M1 M1A
  subtype1 48  8   1
  subtype2 40  5   0
  subtype3 41  8   0
D2V6, multiclass
D2V7, binary
          cls
clus        0  1
  subtype1 28 29
  subtype2 27 19
  subtype3 20 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   29
  subtype2   27   19
  subtype3   20   30
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       28       27       20
  MALE         29       19       30
D2V8, binary
          cls
clus        0  1
  subtype1 54  3
  subtype2 27 18
  subtype3 48  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   54    3
  subtype2   27   18
  subtype3   48    1
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA                54       27       48
  COLON MUCINOUS ADENOCARCINOMA        3       18        1
D2V9, binary
          cls
clus        0
  subtype1 57
  subtype2 46
  subtype3 50
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus       R0 R1 R2
  subtype1 48  1  8
  subtype2 40  0  3
  subtype3 40  0  8
D2V10, multiclass
D2V11, continuous

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1 107  25
  subtype2 131  29
  subtype3  39   9
subtype1 subtype2 subtype3 
     132      160       48 
subtype1 subtype2 subtype3 
      25       29        9 
$subtype1
TCGA-A6-2671 TCGA-A6-2675 TCGA-A6-2677 TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 
       36.99        27.81        17.79        25.58        23.15        22.06 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-A6-4105 TCGA-A6-4107 TCGA-A6-5656 
       16.57        10.92         8.09        14.50         7.59        15.19 
TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5662 TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6138 
        9.40        11.24        14.89        23.64        10.52         9.17 
TCGA-A6-6140 TCGA-A6-6142 TCGA-A6-6650 TCGA-A6-6652 TCGA-A6-6654 TCGA-A6-6782 
       11.70        12.10         9.11        14.96        13.12         6.21 
TCGA-A6-A567 TCGA-A6-A56B TCGA-AA-3488 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       61.84        52.44         5.00         1.02         2.01         0.99 
TCGA-AA-3685 TCGA-AA-3697 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.95         1.02         0.92         0.99         0.99 
TCGA-AA-3856 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00F 
        0.99         0.99         1.02         0.99        13.94        34.03 
TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01C 
       17.00        27.02        14.99        21.99        15.02        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01T TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H 
       13.02        12.00        33.04         2.93        39.95         2.01 
TCGA-AA-A02W TCGA-AA-A03J TCGA-AD-6888 TCGA-AD-6901 TCGA-AD-6963 TCGA-AD-6965 
       40.96        40.93         4.21         1.02         0.10         0.20 
TCGA-AD-A5EK TCGA-AU-3779 TCGA-AY-4070 TCGA-AY-4071 TCGA-AY-5543 TCGA-AY-A54L 
        0.43        14.47        16.31         0.95        15.75         5.19 
TCGA-AZ-4308 TCGA-AZ-4682 TCGA-AZ-4684 TCGA-AZ-6603 TCGA-AZ-6605 TCGA-AZ-6608 
       75.22        22.36        65.00        29.56         5.23         1.94 
TCGA-CA-5256 TCGA-CA-6715 TCGA-CA-6719 TCGA-CK-5912 TCGA-CK-5914 TCGA-CK-6748 
        2.14         0.07         1.35        48.03        21.99         2.01 
TCGA-CM-4747 TCGA-CM-4750 TCGA-CM-4752 TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5860 
        8.02         8.02         4.04        19.04        16.04        16.01 
TCGA-CM-5862 TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 
        5.03        15.02        17.03        14.04        29.03        16.04 
TCGA-CM-6166 TCGA-CM-6170 TCGA-CM-6677 TCGA-CM-6679 TCGA-D5-5537 TCGA-D5-5538 
       21.96        15.02        11.08        10.06        14.99        12.26 
TCGA-D5-5539 TCGA-D5-5540 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6535 TCGA-D5-6538 
       19.59        13.51        18.25         1.32        15.12        17.13 
TCGA-D5-6929 TCGA-D5-6932 TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D8 TCGA-DM-A1HA 
       13.38         0.62       130.65        92.75        12.59       131.51 
TCGA-DM-A288 TCGA-DM-A28A TCGA-DM-A28E TCGA-DM-A28F TCGA-F4-6459 TCGA-F4-6460 
       14.01        26.47       119.93        35.97         8.58        13.38 
TCGA-F4-6808 TCGA-F4-6809 TCGA-F4-6854 TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 
        0.46         1.25         0.53        28.21         8.35        82.39 
TCGA-G4-6303 TCGA-G4-6307 TCGA-G4-6310 TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 
       61.87        55.04        45.11        39.42        35.93        36.72 
TCGA-G4-6317 TCGA-G4-6625 TCGA-G4-6626 TCGA-NH-A50T TCGA-NH-A50V TCGA-QG-A5YV 
       36.00        91.76        46.75         4.11         5.06        26.96 

$subtype2
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2682 TCGA-A6-2684 
       22.88        25.02        23.38        25.68        13.94        12.72 
TCGA-A6-2685 TCGA-A6-2686 TCGA-A6-5657 TCGA-A6-5661 TCGA-A6-5664 TCGA-A6-5665 
       15.25        16.04        12.07        10.06        11.90        13.28 
TCGA-A6-6141 TCGA-A6-6649 TCGA-A6-6651 TCGA-A6-6653 TCGA-A6-6780 TCGA-A6-6781 
        8.35        10.78         8.48         9.27        11.64         9.63 
TCGA-A6-A565 TCGA-A6-A566 TCGA-AA-3489 TCGA-AA-3502 TCGA-AA-3510 TCGA-AA-3518 
       16.21        24.92         1.02         1.02         1.02         1.02 
TCGA-AA-3555 TCGA-AA-3663 TCGA-AA-3675 TCGA-AA-3710 TCGA-AA-3713 TCGA-AA-3715 
        0.99         1.02         1.02         1.02         0.95         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         2.01         2.01         1.02         0.99 
TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00R 
       18.02        30.02        18.02         4.01        27.02         0.99 
TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       20.98         0.99        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02R 
       35.01        35.01        26.01        39.06        51.95        22.03 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AD-5900 TCGA-AD-6548 TCGA-AD-6889 TCGA-AD-6890 
       39.95        18.02         0.07         0.10        56.52         0.79 
TCGA-AD-6895 TCGA-AD-6964 TCGA-AM-5820 TCGA-AM-5821 TCGA-AU-6004 TCGA-AY-6196 
        0.72         0.99         0.46         0.92         6.67         0.20 
TCGA-AY-6386 TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-4615 TCGA-AZ-4616 
       11.84        50.37        58.39         1.41        32.94         5.13 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6607 
       61.41        49.41         6.74        12.10        99.98         3.19 
TCGA-CA-5255 TCGA-CA-5796 TCGA-CA-6716 TCGA-CA-6717 TCGA-CA-6718 TCGA-CK-4947 
        3.06         3.25         0.26         0.33         0.10        17.52 
TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4951 TCGA-CK-5913 TCGA-CK-5916 TCGA-CK-6747 
      102.44        40.31        70.16        28.04        21.01         2.93 
TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4744 TCGA-CM-4748 TCGA-CM-5861 TCGA-CM-5863 
      124.11         6.05         7.04         7.04        15.02        15.02 
TCGA-CM-6161 TCGA-CM-6162 TCGA-CM-6167 TCGA-CM-6168 TCGA-CM-6171 TCGA-CM-6674 
       15.02        12.00        14.99        12.99        14.04        12.95 
TCGA-CM-6675 TCGA-CM-6678 TCGA-CM-6680 TCGA-D5-6529 TCGA-D5-6530 TCGA-D5-6531 
       13.02        11.01        12.03        20.19        20.42        17.75 
TCGA-D5-6534 TCGA-D5-6536 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6920 TCGA-D5-6924 
        7.92        17.85        12.49        16.14        12.39        14.27 
TCGA-D5-6927 TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6931 TCGA-D5-7000 TCGA-DM-A0XD 
        9.44        11.64         1.48        12.00        10.26        24.43 
TCGA-DM-A1D6 TCGA-DM-A1D7 TCGA-DM-A1D9 TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A282 
       49.91        13.28       140.38       135.65         7.73       139.17 
TCGA-DM-A28C TCGA-DM-A28G TCGA-DM-A28K TCGA-DM-A28M TCGA-F4-6461 TCGA-F4-6463 
       81.37        60.79        98.24        95.18        11.11        13.61 
TCGA-F4-6569 TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6806 TCGA-F4-6807 
       13.41         6.15         9.80         1.51         0.66         0.53 
TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6293 TCGA-G4-6298 TCGA-G4-6302 TCGA-G4-6304 
        9.86         0.66       107.67        23.51        43.04        53.62 
TCGA-G4-6309 TCGA-G4-6320 TCGA-G4-6321 TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 
       51.75        26.43        22.06        26.04        13.78        35.80 
TCGA-G4-6588 TCGA-G4-6627 TCGA-G4-6628 TCGA-QG-A5Z2 
       26.17        47.15        52.96        14.76 

$subtype3
TCGA-A6-6137 TCGA-A6-6648 TCGA-A6-A5ZU TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3496 
       11.44        11.31         3.81         1.02         1.02         1.02 
TCGA-AA-3526 TCGA-AA-3660 TCGA-AA-A00D TCGA-AA-A00K TCGA-AA-A00U TCGA-AA-A01S 
        0.99         1.02        19.00        18.02        17.00         1.02 
TCGA-AA-A01Z TCGA-AA-A02J TCGA-AA-A02O TCGA-AD-6899 TCGA-AY-6197 TCGA-AZ-4614 
       20.98         5.03         0.92         1.55        13.91         5.65 
TCGA-AZ-4681 TCGA-AZ-5403 TCGA-AZ-6606 TCGA-CA-5254 TCGA-CA-5797 TCGA-CK-4952 
       83.80        62.79        11.74         2.24         3.29        15.58 
TCGA-CM-4746 TCGA-CM-4751 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-6169 TCGA-CM-6172 
       22.98        19.96        21.96        19.04        13.02        10.98 
TCGA-CM-6676 TCGA-D5-5541 TCGA-D5-6537 TCGA-D5-6541 TCGA-D5-6898 TCGA-D5-6922 
       11.08        11.51         4.47        15.58         7.53        10.13 
TCGA-D5-6923 TCGA-D5-6926 TCGA-DM-A0X9 TCGA-DM-A0XF TCGA-DM-A1DA TCGA-DM-A1DB 
       12.39         9.04       119.70        38.20         7.46        44.32 
TCGA-DM-A285 TCGA-DM-A28H TCGA-F4-6805 TCGA-G4-6299 TCGA-G4-6306 TCGA-QG-A5YX 
        6.08       117.07         0.53        74.56        44.65        17.29 

subtype1 subtype2 subtype3 
    0.07     0.07     0.53 
subtype1 subtype2 subtype3 
  131.51   140.38   119.70 
subtype1 subtype2 subtype3 
  14.255   12.605   11.475 
[1] "0.1 - 131.5 (14.3)" "0.1 - 140.4 (12.6)" "0.5 - 119.7 (11.5)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[337] "subtype1" "subtype1" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[337] "subtype1" "subtype1" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[337] "subtype1" "subtype1" "subtype3" "subtype2"
D3V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      21        0        6        41         2         1         8
  subtype2      38        1       19        65         6         0        10
  subtype3      12        0        8        13         0         0         4
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          8         24         17       26        11         0
  subtype2          3         20         14       10         3         1
  subtype3          2          8          5        6         2         0
D3V3, multiclass
          vv
clus       T0+T1  T2  T3  T4
  subtype1     5  25 123  17
  subtype2     6  36 126  25
  subtype3     0  14  41   5
D3V4, multiclass
          vv
clus        N0  N1  N2
  subtype1  79  53  37
  subtype2 133  33  28
  subtype3  36  15   9
D3V5, multiclass
          vv
clus        M0  M1 M1A M1B  MX
  subtype1 114  32   5   0  16
  subtype2 157  11   1   1  21
  subtype3  47   7   1   0   4
D3V6, multiclass
D3V7, binary
          cls
clus        0  1
  subtype1 76 94
  subtype2 97 97
  subtype3 25 35
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   76   94
  subtype2   97   97
  subtype3   25   35
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       76       97       25
  MALE         94       97       35
D3V8, binary
          cls
clus         0   1
  subtype1 165   4
  subtype2 147  46
  subtype3  55   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  165    4
  subtype2  147   46
  subtype3   55    5
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA               165      147       55
  COLON MUCINOUS ADENOCARCINOMA        4       46        5
D3V9, binary
          cls
clus         0   1
  subtype1   2 168
  subtype2   0 194
  subtype3   1  59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  168
  subtype2    0  194
  subtype3    1   59
     clus
vv    subtype1 subtype2 subtype3
  NO         2        0        1
  YES      168      194       59
          vv
clus        R0  R1  R2  RX
  subtype1 117   1  15   7
  subtype2 140   2   4  14
  subtype3  40   0   5   3
D3V10, multiclass
D3V11, continuous

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 87 20
  subtype2 68 17
  subtype3 56 12
subtype1 subtype2 subtype3 
     107       85       68 
subtype1 subtype2 subtype3 
      20       17       12 
$subtype1
TCGA-A6-2671 TCGA-A6-2675 TCGA-A6-2677 TCGA-A6-2680 TCGA-A6-3810 TCGA-A6-5656 
       36.99        27.81        17.79        23.15         8.09        15.19 
TCGA-A6-5660 TCGA-A6-5662 TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 TCGA-A6-6138 
       11.24        14.89        23.64        10.52        11.44         9.17 
TCGA-A6-6140 TCGA-A6-6648 TCGA-A6-6650 TCGA-A6-6652 TCGA-A6-6782 TCGA-A6-A56B 
       11.70        11.31         9.11        14.96         6.21        52.44 
TCGA-AA-3488 TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3496 TCGA-AA-3660 TCGA-AA-3697 
        5.00         1.02         1.02         1.02         1.02         0.95 
TCGA-AD-6888 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 TCGA-AD-6964 TCGA-AD-A5EK 
        4.21         0.72         1.55         1.02         0.99         0.43 
TCGA-AM-5820 TCGA-AU-3779 TCGA-AY-5543 TCGA-AZ-4308 TCGA-AZ-4681 TCGA-AZ-4682 
        0.46        14.47        15.75        75.22        83.80        22.36 
TCGA-AZ-4684 TCGA-AZ-6603 TCGA-AZ-6608 TCGA-CA-5256 TCGA-CA-6715 TCGA-CA-6716 
       65.00        29.56         1.94         2.14         0.07         0.26 
TCGA-CA-6719 TCGA-CK-5912 TCGA-CK-5914 TCGA-CK-6748 TCGA-CM-4746 TCGA-CM-4750 
        1.35        48.03        21.99         2.01        22.98         8.02 
TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5349 TCGA-CM-5862 TCGA-CM-5864 TCGA-CM-5868 
       19.04        16.04        19.04         5.03        15.02        17.03 
TCGA-CM-6161 TCGA-CM-6163 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6169 TCGA-CM-6170 
       15.02        14.04        16.04        21.96        13.02        15.02 
TCGA-CM-6172 TCGA-CM-6676 TCGA-CM-6678 TCGA-CM-6679 TCGA-D5-5537 TCGA-D5-5540 
       10.98        11.08        11.01        10.06        14.99        13.51 
TCGA-D5-5541 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6537 TCGA-D5-6541 TCGA-D5-6922 
       11.51        18.25         1.32         4.47        15.58        10.13 
TCGA-D5-6929 TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D6 TCGA-DM-A1D7 TCGA-DM-A1D9 
       13.38        38.20       130.65        49.91        13.28       140.38 
TCGA-DM-A1DB TCGA-DM-A282 TCGA-DM-A28A TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F 
       44.32       139.17        26.47        81.37       119.93        35.97 
TCGA-DM-A28G TCGA-DM-A28H TCGA-F4-6459 TCGA-F4-6463 TCGA-F4-6808 TCGA-F4-6854 
       60.79       117.07         8.58        13.61         0.46         0.53 
TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6294 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6303 
        9.86         0.66        28.21        82.39        23.51        61.87 
TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6310 TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 
       44.65        55.04        45.11        39.42        35.93        36.72 
TCGA-G4-6317 TCGA-G4-6626 TCGA-NH-A50T TCGA-QG-A5YV TCGA-QG-A5YX 
       36.00        46.75         4.11        26.96        17.29 

$subtype2
TCGA-A6-2679 TCGA-A6-2681 TCGA-A6-2686 TCGA-A6-3809 TCGA-A6-4105 TCGA-A6-4107 
       25.58        22.06        16.04        10.29        14.50         7.59 
TCGA-A6-5659 TCGA-A6-5661 TCGA-A6-5665 TCGA-A6-6649 TCGA-A6-6653 TCGA-A6-6780 
        9.40        10.06        13.28        10.78         9.27        11.64 
TCGA-A6-A566 TCGA-AA-3502 TCGA-AA-3663 TCGA-AA-3713 TCGA-AD-5900 TCGA-AD-6548 
       24.92         1.02         1.02         0.95         0.07         0.10 
TCGA-AD-6890 TCGA-AM-5821 TCGA-AY-6197 TCGA-AY-6386 TCGA-AY-A54L TCGA-AZ-4614 
        0.79         0.92        13.91        11.84         5.19         5.65 
TCGA-AZ-4615 TCGA-AZ-4616 TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6606 
       32.94         5.13        61.41        49.41         6.74        11.74 
TCGA-CA-5254 TCGA-CA-5796 TCGA-CK-4947 TCGA-CK-4950 TCGA-CK-4951 TCGA-CK-4952 
        2.24         3.25        17.52        40.31        70.16        15.58 
TCGA-CK-5913 TCGA-CK-5916 TCGA-CK-6747 TCGA-CK-6751 TCGA-CM-4744 TCGA-CM-4747 
       28.04        21.01         2.93       124.11         7.04         8.02 
TCGA-CM-4751 TCGA-CM-5860 TCGA-CM-5861 TCGA-CM-6171 TCGA-CM-6675 TCGA-CM-6677 
       19.96        16.01        15.02        14.04        13.02        11.08 
TCGA-CM-6680 TCGA-D5-5538 TCGA-D5-5539 TCGA-D5-6531 TCGA-D5-6535 TCGA-D5-6538 
       12.03        12.26        19.59        17.75        15.12        17.13 
TCGA-D5-6540 TCGA-D5-6920 TCGA-D5-6923 TCGA-D5-6927 TCGA-D5-6931 TCGA-D5-7000 
       16.14        12.39        12.39         9.44        12.00        10.26 
TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A1D4 TCGA-DM-A1D8 TCGA-DM-A1DA TCGA-DM-A1HA 
      119.70        24.43        92.75        12.59         7.46       131.51 
TCGA-DM-A1HB TCGA-DM-A285 TCGA-DM-A288 TCGA-DM-A28K TCGA-DM-A28M TCGA-F4-6461 
      135.65         6.08        14.01        98.24        95.18        11.11 
TCGA-F4-6570 TCGA-F4-6806 TCGA-G4-6293 TCGA-G4-6299 TCGA-G4-6320 TCGA-G4-6321 
        6.15         0.66       107.67        74.56        26.43        22.06 
TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6628 TCGA-NH-A50V 
       26.04        13.78        35.80        26.17        52.96         5.06 
TCGA-QG-A5Z2 
       14.76 

$subtype3
TCGA-A6-2682 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-5657 TCGA-A6-5664 TCGA-A6-6141 
       13.94        12.72        15.25        12.07        11.90         8.35 
TCGA-A6-6142 TCGA-A6-6651 TCGA-A6-6654 TCGA-A6-6781 TCGA-A6-A565 TCGA-A6-A567 
       12.10         8.48        13.12         9.63        16.21        61.84 
TCGA-A6-A5ZU TCGA-AA-3489 TCGA-AA-3510 TCGA-AD-6889 TCGA-AD-6963 TCGA-AD-6965 
        3.81         1.02         1.02        56.52         0.10         0.20 
TCGA-AU-6004 TCGA-AY-6196 TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-5403 
        6.67         0.20        50.37        58.39         1.41        62.79 
TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6605 TCGA-AZ-6607 TCGA-CA-5255 TCGA-CA-5797 
       12.10        99.98         5.23         3.19         3.06         3.29 
TCGA-CA-6717 TCGA-CA-6718 TCGA-CK-4948 TCGA-CM-4743 TCGA-CM-4748 TCGA-CM-4752 
        0.33         0.10       102.44         6.05         7.04         4.04 
TCGA-CM-5348 TCGA-CM-5863 TCGA-CM-6162 TCGA-CM-6164 TCGA-CM-6167 TCGA-CM-6168 
       21.96        15.02        12.00        29.03        14.99        12.99 
TCGA-CM-6674 TCGA-D5-6529 TCGA-D5-6530 TCGA-D5-6534 TCGA-D5-6536 TCGA-D5-6539 
       12.95        20.19        20.42         7.92        17.85        12.49 
TCGA-D5-6898 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6932 
        7.53        14.27         9.04        11.64         1.48         0.62 
TCGA-DM-A280 TCGA-F4-6460 TCGA-F4-6569 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 
        7.73        13.38        13.41         9.80         1.51         0.53 
TCGA-F4-6807 TCGA-F4-6809 TCGA-G4-6295 TCGA-G4-6302 TCGA-G4-6304 TCGA-G4-6309 
        0.53         1.25         8.35        43.04        53.62        51.75 
TCGA-G4-6625 TCGA-G4-6627 
       91.76        47.15 

subtype1 subtype2 subtype3 
    0.07     0.07     0.10 
subtype1 subtype2 subtype3 
  140.38   135.65   102.44 
subtype1 subtype2 subtype3 
   14.99    13.78    11.95 
[1] "0.1 - 140.4 (15.0)" "0.1 - 135.7 (13.8)" "0.1 - 102.4 (11.9)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype2"
D4V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      15        0        7        31         1         1         4
  subtype2      19        1        4        26         3         0         4
  subtype3       6        0        8        23         1         0         0
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          5         16          8       11        10         0
  subtype2          2         13          6        4         3         1
  subtype3          3         11          7        5         2         0
D4V3, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     3 18 80 12
  subtype2     3 18 56 10
  subtype3     1  5 51 11
D4V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 63 31 18
  subtype2 55 19 14
  subtype3 40 19  9
D4V5, multiclass
          vv
clus       M0 M1 M1A M1B MX
  subtype1 72 17   4   0 19
  subtype2 64  5   1   1 14
  subtype3 52  6   1   0  8
D4V6, multiclass
D4V7, binary
          cls
clus        0  1
  subtype1 46 67
  subtype2 48 40
  subtype3 27 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46   67
  subtype2   48   40
  subtype3   27   41
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       46       48       27
  MALE         67       40       41
D4V8, binary
          cls
clus         0   1
  subtype1 107   6
  subtype2  73  15
  subtype3  56  12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  107    6
  subtype2   73   15
  subtype3   56   12
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA               107       73       56
  COLON MUCINOUS ADENOCARCINOMA        6       15       12
D4V9, binary
          cls
clus         0   1
  subtype1   2 111
  subtype2   0  88
  subtype3   1  67
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  111
  subtype2    0   88
  subtype3    1   67
     clus
vv    subtype1 subtype2 subtype3
  NO         2        0        1
  YES      111       88       67
          vv
clus       R0 R1 R2 RX
  subtype1 71  0  3  8
  subtype2 53  2  1 10
  subtype3 44  0  0  5
D4V10, multiclass
D4V11, continuous

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 60  8
  subtype2 79 21
  subtype3 18  2
  subtype4 68 19
subtype1 subtype2 subtype3 subtype4 
      68      100       20       87 
subtype1 subtype2 subtype3 subtype4 
       8       21        2       19 
$subtype1
TCGA-A6-2671 TCGA-A6-2677 TCGA-A6-2680 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-2686 
       36.99        17.79        23.15        12.72        15.25        16.04 
TCGA-A6-3808 TCGA-A6-3809 TCGA-A6-3810 TCGA-A6-5656 TCGA-A6-5657 TCGA-A6-5659 
        9.14        10.29         8.09        15.19        12.07         9.40 
TCGA-A6-5660 TCGA-A6-5667 TCGA-A6-6141 TCGA-A6-6142 TCGA-A6-6649 TCGA-A6-6651 
       11.24        10.52         8.35        12.10        10.78         8.48 
TCGA-A6-6782 TCGA-AA-3489 TCGA-AA-3502 TCGA-AA-3562 TCGA-AA-3715 TCGA-AA-3818 
        6.21         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3856 TCGA-AA-3947 TCGA-AA-3975 TCGA-AA-A00J TCGA-AA-A00K 
        1.02         0.99         0.99         0.99        18.02        18.02 
TCGA-AA-A02W TCGA-AD-5900 TCGA-AY-6196 TCGA-AY-6386 TCGA-AZ-4308 TCGA-AZ-4615 
       40.96         0.07         0.20        11.84        75.22        32.94 
TCGA-AZ-6607 TCGA-CA-5254 TCGA-CA-5255 TCGA-CA-5797 TCGA-CA-6717 TCGA-CA-6719 
        3.19         2.24         3.06         3.29         0.33         1.35 
TCGA-CK-6748 TCGA-CM-4747 TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 
        2.01         8.02        19.04        16.04        21.96        19.04 
TCGA-CM-5868 TCGA-CM-6167 TCGA-CM-6677 TCGA-D5-5538 TCGA-D5-6534 TCGA-D5-6922 
       17.03        14.99        11.08        12.26         7.92        10.13 
TCGA-D5-6926 TCGA-DM-A1HA TCGA-DM-A280 TCGA-DM-A28A TCGA-F4-6459 TCGA-F4-6463 
        9.04       131.51         7.73        26.47         8.58        13.61 
TCGA-F4-6570 TCGA-F4-6704 TCGA-F4-6809 TCGA-F4-6854 TCGA-G4-6299 TCGA-G4-6310 
        6.15         1.51         1.25         0.53        74.56        45.11 
TCGA-G4-6314 TCGA-G4-6625 
       35.93        91.76 

$subtype2
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-5662 TCGA-A6-5664 
       22.88        23.38        25.68        16.57        14.89        11.90 
TCGA-A6-5665 TCGA-A6-5666 TCGA-A6-6137 TCGA-A6-6138 TCGA-A6-6140 TCGA-A6-6650 
       13.28        23.64        11.44         9.17        11.70         9.11 
TCGA-A6-6652 TCGA-A6-6654 TCGA-AA-3496 TCGA-AA-3510 TCGA-AA-3555 TCGA-AA-3697 
       14.96        13.12         1.02         1.02         0.99         0.95 
TCGA-AA-3713 TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-A00E TCGA-AA-A00Q 
        0.95         0.99         0.92         0.99        30.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01C TCGA-AA-A01I TCGA-AA-A01R 
       17.00        14.99        20.98        15.02        12.00        35.01 
TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02E TCGA-AA-A02F 
        1.02        35.01        26.01        39.06         2.93        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03J TCGA-AD-6889 
        2.01         5.03         0.92        39.95        40.93        56.52 
TCGA-AD-6899 TCGA-AD-6965 TCGA-AY-6197 TCGA-AZ-4614 TCGA-AZ-4682 TCGA-AZ-4684 
        1.55         0.20        13.91         5.65        22.36        65.00 
TCGA-AZ-5407 TCGA-AZ-6599 TCGA-AZ-6603 TCGA-AZ-6606 TCGA-AZ-6608 TCGA-CA-5256 
       61.41         6.74        29.56        11.74         1.94         2.14 
TCGA-CA-5796 TCGA-CA-6715 TCGA-CA-6716 TCGA-CK-5914 TCGA-CK-6747 TCGA-CM-4746 
        3.25         0.07         0.26        21.99         2.93        22.98 
TCGA-CM-5864 TCGA-CM-6161 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6172 TCGA-CM-6675 
       15.02        15.02        16.04        21.96        10.98        13.02 
TCGA-CM-6676 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6532 
       11.08        10.06        12.03        13.51        11.51        18.25 
TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6920 TCGA-D5-6923 TCGA-D5-6924 TCGA-D5-6931 
        4.47        17.13        12.39        12.39        14.27        12.00 
TCGA-DM-A0X9 TCGA-DM-A1D6 TCGA-DM-A1D7 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1DB 
      119.70        49.91        13.28       140.38         7.46        44.32 
TCGA-DM-A282 TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28G TCGA-DM-A28M 
      139.17        81.37       119.93        35.97        60.79        95.18 
TCGA-F4-6460 TCGA-F4-6806 TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6303 
       13.38         0.66        28.21         8.35        82.39        61.87 
TCGA-G4-6309 TCGA-G4-6315 TCGA-G4-6320 TCGA-G4-6322 
       51.75        36.72        26.43        26.04 

$subtype3
TCGA-A6-2681 TCGA-AA-3854 TCGA-AA-A004 TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00Z 
       22.06         1.02        13.94        34.03        17.00        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01P TCGA-AA-A01T TCGA-AA-A029 
       15.02         0.99        13.02        38.07        33.04        51.95 
TCGA-AA-A02K TCGA-AY-5543 TCGA-CM-5863 TCGA-CM-6164 TCGA-D5-6531 TCGA-D5-6898 
       13.97        15.75        15.02        29.03        17.75         7.53 
TCGA-F4-6855 TCGA-G4-6323 
        9.86        13.78 

$subtype4
TCGA-A6-3807 TCGA-A6-5661 TCGA-A6-6648 TCGA-A6-6653 TCGA-A6-6780 TCGA-A6-6781 
       10.92        10.06        11.31         9.27        11.64         9.63 
TCGA-AA-3710 TCGA-AA-3862 TCGA-AA-3950 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00N 
        1.02         1.02         1.02         0.99        18.02         4.01 
TCGA-AA-A00R TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A02R TCGA-AA-A03F TCGA-AD-6548 
        0.99        13.02         1.02        22.03        18.02         0.10 
TCGA-AM-5820 TCGA-AM-5821 TCGA-AU-6004 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-4616 
        0.46         0.92         6.67        58.39         1.41         5.13 
TCGA-AZ-6598 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6605 TCGA-CA-6718 TCGA-CK-5916 
       49.41        12.10        99.98         5.23         0.10        21.01 
TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4744 TCGA-CM-4748 TCGA-CM-4750 TCGA-CM-4752 
      124.11         6.05         7.04         7.04         8.02         4.04 
TCGA-CM-5860 TCGA-CM-5861 TCGA-CM-5862 TCGA-CM-6162 TCGA-CM-6163 TCGA-CM-6168 
       16.01        15.02         5.03        12.00        14.04        12.99 
TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6171 TCGA-CM-6674 TCGA-CM-6678 TCGA-D5-5539 
       13.02        15.02        14.04        12.95        11.01        19.59 
TCGA-D5-6529 TCGA-D5-6530 TCGA-D5-6533 TCGA-D5-6535 TCGA-D5-6536 TCGA-D5-6539 
       20.19        20.42         1.32        15.12        17.85        12.49 
TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6927 TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6932 
       16.14        15.58         9.44        11.64         1.48         0.62 
TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D8 TCGA-DM-A1HB TCGA-DM-A288 
       38.20       130.65        92.75        12.59       135.65        14.01 
TCGA-F4-6461 TCGA-F4-6569 TCGA-F4-6703 TCGA-F4-6805 TCGA-F4-6807 TCGA-F4-6808 
       11.11        13.41         9.80         0.53         0.53         0.46 
TCGA-F4-6856 TCGA-G4-6293 TCGA-G4-6298 TCGA-G4-6302 TCGA-G4-6304 TCGA-G4-6306 
        0.66       107.67        23.51        43.04        53.62        44.65 
TCGA-G4-6307 TCGA-G4-6311 TCGA-G4-6317 TCGA-G4-6321 TCGA-G4-6586 TCGA-G4-6588 
       55.04        39.42        36.00        22.06        35.80        26.17 
TCGA-G4-6626 TCGA-G4-6627 TCGA-G4-6628 
       46.75        47.15        52.96 

subtype1 subtype2 subtype3 subtype4 
    0.07     0.07     0.99     0.10 
subtype1 subtype2 subtype3 subtype4 
  131.51   140.38    51.95   135.65 
subtype1 subtype2 subtype3 subtype4 
  10.210   14.580   15.385   12.950 
[1] "0.1 - 131.5 (10.2)" "0.1 - 140.4 (14.6)" "1.0 - 52.0 (15.4)" 
[4] "0.1 - 135.7 (12.9)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
 [37] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [61] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype4"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[103] "subtype1" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
[109] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[121] "subtype2" "subtype2" "subtype2" "subtype4" "subtype2" "subtype4"
[127] "subtype4" "subtype2" "subtype4" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[187] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[199] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[211] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[217] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype4" "subtype1" "subtype2" "subtype4" "subtype1" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[241] "subtype4" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[247] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[253] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[259] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
[265] "subtype4" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
[271] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
 [37] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [61] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype4"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[103] "subtype1" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
[109] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[121] "subtype2" "subtype2" "subtype2" "subtype4" "subtype2" "subtype4"
[127] "subtype4" "subtype2" "subtype4" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[187] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[199] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[211] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[217] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype4" "subtype1" "subtype2" "subtype4" "subtype1" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[241] "subtype4" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[247] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[253] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[259] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
[265] "subtype4" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
[271] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
 [37] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [61] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype4"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[103] "subtype1" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
[109] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[121] "subtype2" "subtype2" "subtype2" "subtype4" "subtype2" "subtype4"
[127] "subtype4" "subtype2" "subtype4" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[187] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[199] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
[211] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[217] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype4" "subtype1" "subtype2" "subtype4" "subtype1" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[241] "subtype4" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[247] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[253] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[259] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
[265] "subtype4" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
[271] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
D5V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      10        0        9        20         3         0         2
  subtype2      18        0       11        33         3         1         9
  subtype3       3        1        1        12         0         0         2
  subtype4      18        0        4        38         2         0         6
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          3         14         10        5         4         0
  subtype2          2         17          8       18         5         1
  subtype3          0          3          3        1         1         0
  subtype4          3          8          8        4         4         0
D5V3, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     0 12 59  9
  subtype2     2 21 90 15
  subtype3     0  3 22  1
  subtype4     4 17 62 13
D5V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 42 23 15
  subtype2 72 32 24
  subtype3 17  6  4
  subtype4 65 19 12
D5V5, multiclass
          vv
clus       M0 M1 M1A M1B MX
  subtype1 65  6   3   0  5
  subtype2 92 23   0   1 11
  subtype3 24  2   0   0  1
  subtype4 78  5   3   0  9
D5V6, multiclass
D5V7, binary
          cls
clus        0  1
  subtype1 38 42
  subtype2 56 72
  subtype3 13 14
  subtype4 48 48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38   42
  subtype2   56   72
  subtype3   13   14
  subtype4   48   48
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       38       56       13       48
  MALE         42       72       14       48
D5V8, binary
          cls
clus         0   1
  subtype1  68  12
  subtype2 121   7
  subtype3  23   4
  subtype4  81  15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68   12
  subtype2  121    7
  subtype3   23    4
  subtype4   81   15
                               clus
vv                              subtype1 subtype2 subtype3 subtype4
  COLON ADENOCARCINOMA                68      121       23       81
  COLON MUCINOUS ADENOCARCINOMA       12        7        4       15
D5V9, binary
          cls
clus         0   1
  subtype1   2  78
  subtype2   1 127
  subtype3   0  27
  subtype4   0  96
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   78
  subtype2    1  127
  subtype3    0   27
  subtype4    0   96
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         2        1        0        0
  YES       78      127       27       96
          vv
clus       R0 R2 RX
  subtype1 60  1  6
  subtype2 77 13  6
  subtype3 26  1  0
  subtype4 76  1  4
D5V10, multiclass
D5V11, continuous

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1  13   9
  subtype2  44   9
  subtype3  55   6
  subtype4 113  26
subtype1 subtype2 subtype3 subtype4 
      22       53       61      139 
subtype1 subtype2 subtype3 subtype4 
       9        9        6       26 
$subtype1
TCGA-A6-5661 TCGA-AA-A02H TCGA-AA-A02K TCGA-AA-A02R TCGA-AA-A03F TCGA-AY-6197 
       10.06         2.01        13.97        22.03        18.02        13.91 
TCGA-AZ-4615 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-CA-5255 TCGA-CA-5256 TCGA-CM-4748 
       32.94        49.41         6.74         3.06         2.14         7.04 
TCGA-CM-5349 TCGA-CM-6162 TCGA-CM-6170 TCGA-D5-6531 TCGA-D5-6536 TCGA-DM-A1D8 
       19.04        12.00        15.02        17.75        17.85        12.59 
TCGA-DM-A280 TCGA-F4-6570 TCGA-G4-6293 TCGA-G4-6304 
        7.73         6.15       107.67        53.62 

$subtype2
TCGA-A6-3807 TCGA-A6-6648 TCGA-A6-6653 TCGA-A6-6780 TCGA-A6-6781 TCGA-AA-3862 
       10.92        11.31         9.27        11.64         9.63         1.02 
TCGA-AA-3950 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01Q TCGA-AD-6548 
        1.02        18.02         4.01         0.99         1.02         0.10 
TCGA-AM-5821 TCGA-AZ-4323 TCGA-AZ-4616 TCGA-AZ-6601 TCGA-AZ-6605 TCGA-CA-6718 
        0.92         1.41         5.13        99.98         5.23         0.10 
TCGA-CK-5916 TCGA-CM-4743 TCGA-CM-4744 TCGA-CM-4752 TCGA-CM-5862 TCGA-CM-6163 
       21.01         6.05         7.04         4.04         5.03        14.04 
TCGA-CM-6171 TCGA-CM-6674 TCGA-CM-6678 TCGA-D5-5539 TCGA-D5-6529 TCGA-D5-6530 
       14.04        12.95        11.01        19.59        20.19        20.42 
TCGA-D5-6533 TCGA-D5-6540 TCGA-D5-6927 TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6932 
        1.32        16.14         9.44        11.64         1.48         0.62 
TCGA-DM-A0XF TCGA-DM-A1HB TCGA-F4-6569 TCGA-F4-6703 TCGA-F4-6807 TCGA-F4-6808 
       38.20       135.65        13.41         9.80         0.53         0.46 
TCGA-F4-6856 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6311 TCGA-G4-6317 TCGA-G4-6321 
        0.66        44.65        55.04        39.42        36.00        22.06 
TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6626 TCGA-G4-6627 TCGA-G4-6628 
       35.80        26.17        46.75        47.15        52.96 

$subtype3
TCGA-A6-2671 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-3808 TCGA-A6-5657 TCGA-A6-5660 
       36.99        12.72        15.25         9.14        12.07        11.24 
TCGA-A6-6138 TCGA-A6-6142 TCGA-A6-6649 TCGA-A6-6651 TCGA-A6-6652 TCGA-A6-6782 
        9.17        12.10        10.78         8.48        14.96         6.21 
TCGA-AA-3489 TCGA-AA-3562 TCGA-AA-3986 TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A01K 
        1.02         1.02         0.99        18.02        18.02        13.02 
TCGA-AA-A02W TCGA-AD-5900 TCGA-AM-5820 TCGA-AU-6004 TCGA-AY-6196 TCGA-AZ-4308 
       40.96         0.07         0.46         6.67         0.20        75.22 
TCGA-AZ-6607 TCGA-CA-5797 TCGA-CA-6717 TCGA-CA-6719 TCGA-CM-4747 TCGA-CM-4750 
        3.19         3.29         0.33         1.35         8.02         8.02 
TCGA-CM-5348 TCGA-CM-5861 TCGA-CM-5868 TCGA-CM-6164 TCGA-CM-6167 TCGA-CM-6168 
       21.96        15.02        17.03        29.03        14.99        12.99 
TCGA-CM-6169 TCGA-CM-6677 TCGA-D5-5538 TCGA-D5-6534 TCGA-D5-6541 TCGA-D5-6898 
       13.02        11.08        12.26         7.92        15.58         7.53 
TCGA-D5-6922 TCGA-D5-6924 TCGA-D5-6926 TCGA-DM-A1D0 TCGA-DM-A1DB TCGA-DM-A1HA 
       10.13        14.27         9.04       130.65        44.32       131.51 
TCGA-DM-A288 TCGA-F4-6459 TCGA-F4-6463 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6809 
       14.01         8.58        13.61         1.51         0.53         1.25 
TCGA-F4-6854 TCGA-F4-6855 TCGA-G4-6299 TCGA-G4-6302 TCGA-G4-6310 TCGA-G4-6314 
        0.53         9.86        74.56        43.04        45.11        35.93 
TCGA-G4-6625 
       91.76 

$subtype4
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2680 TCGA-A6-2681 
       22.88        23.38        17.79        25.68        23.15        22.06 
TCGA-A6-2683 TCGA-A6-2686 TCGA-A6-3809 TCGA-A6-3810 TCGA-A6-5656 TCGA-A6-5659 
       16.57        16.04        10.29         8.09        15.19         9.40 
TCGA-A6-5662 TCGA-A6-5664 TCGA-A6-5665 TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 
       14.89        11.90        13.28        23.64        10.52        11.44 
TCGA-A6-6140 TCGA-A6-6141 TCGA-A6-6650 TCGA-A6-6654 TCGA-AA-3496 TCGA-AA-3502 
       11.70         8.35         9.11        13.12         1.02         1.02 
TCGA-AA-3510 TCGA-AA-3555 TCGA-AA-3697 TCGA-AA-3710 TCGA-AA-3713 TCGA-AA-3715 
        1.02         0.99         0.95         1.02         0.95         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 
        0.99         0.99         1.02         0.92         0.99         1.02 
TCGA-AA-3856 TCGA-AA-3947 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00F 
        0.99         0.99         0.99        13.94        30.02        34.03 
TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       17.00        27.02        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01C TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01P 
       15.02        15.02         0.99        13.02        12.00        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y 
       51.95         2.93        39.95         5.03         0.92        39.95 
TCGA-AA-A03J TCGA-AD-6889 TCGA-AD-6899 TCGA-AD-6965 TCGA-AY-5543 TCGA-AY-6386 
       40.93        56.52         1.55         0.20        15.75        11.84 
TCGA-AZ-4315 TCGA-AZ-4614 TCGA-AZ-4682 TCGA-AZ-4684 TCGA-AZ-5407 TCGA-AZ-6600 
       58.39         5.65        22.36        65.00        61.41        12.10 
TCGA-AZ-6603 TCGA-AZ-6606 TCGA-AZ-6608 TCGA-CA-5254 TCGA-CA-5796 TCGA-CA-6715 
       29.56        11.74         1.94         2.24         3.25         0.07 
TCGA-CA-6716 TCGA-CK-5914 TCGA-CK-6747 TCGA-CK-6748 TCGA-CK-6751 TCGA-CM-4746 
        0.26        21.99         2.93         2.01       124.11        22.98 
TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5860 TCGA-CM-5863 TCGA-CM-5864 TCGA-CM-6161 
       19.04        16.04        16.01        15.02        15.02        15.02 
TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6172 TCGA-CM-6675 TCGA-CM-6676 TCGA-CM-6679 
       16.04        21.96        10.98        13.02        11.08        10.06 
TCGA-CM-6680 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6532 TCGA-D5-6535 TCGA-D5-6537 
       12.03        13.51        11.51        18.25        15.12         4.47 
TCGA-D5-6538 TCGA-D5-6539 TCGA-D5-6920 TCGA-D5-6923 TCGA-D5-6931 TCGA-DM-A0X9 
       17.13        12.49        12.39        12.39        12.00       119.70 
TCGA-DM-A1D4 TCGA-DM-A1D6 TCGA-DM-A1D7 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A282 
       92.75        49.91        13.28       140.38         7.46       139.17 
TCGA-DM-A28A TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28G TCGA-DM-A28M 
       26.47        81.37       119.93        35.97        60.79        95.18 
TCGA-F4-6460 TCGA-F4-6461 TCGA-F4-6806 TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 
       13.38        11.11         0.66        28.21         8.35        82.39 
TCGA-G4-6298 TCGA-G4-6303 TCGA-G4-6309 TCGA-G4-6315 TCGA-G4-6320 TCGA-G4-6322 
       23.51        61.87        51.75        36.72        26.43        26.04 
TCGA-G4-6323 
       13.78 

subtype1 subtype2 subtype3 subtype4 
    2.01     0.10     0.07     0.07 
subtype1 subtype2 subtype3 subtype4 
  107.67   135.65   131.51   140.38 
subtype1 subtype2 subtype3 subtype4 
   13.94    11.01    12.07    14.99 
[1] "2.0 - 107.7 (13.9)" "0.1 - 135.7 (11.0)" "0.1 - 131.5 (12.1)"
[4] "0.1 - 140.4 (15.0)"
  [1] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
  [7] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype2"
 [13] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
 [19] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [25] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [37] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
 [43] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [49] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
 [61] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
 [67] "subtype3" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [73] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
 [85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
 [97] "subtype4" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[109] "subtype2" "subtype3" "subtype4" "subtype3" "subtype1" "subtype4"
[115] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[121] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
[133] "subtype4" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[139] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[157] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
[163] "subtype4" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
[169] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
[181] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[187] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[211] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[217] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[223] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[229] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[235] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[253] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
[259] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype4"
[265] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
  [7] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype2"
 [13] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
 [19] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [25] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [37] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
 [43] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [49] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
 [61] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
 [67] "subtype3" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [73] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
 [85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
 [97] "subtype4" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[109] "subtype2" "subtype3" "subtype4" "subtype3" "subtype1" "subtype4"
[115] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[121] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
[133] "subtype4" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[139] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[157] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
[163] "subtype4" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
[169] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
[181] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[187] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[211] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[217] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[223] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[229] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[235] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[253] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
[259] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype4"
[265] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
  [7] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype2"
 [13] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
 [19] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [25] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [37] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
 [43] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [49] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
 [61] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
 [67] "subtype3" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [73] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
 [85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
 [97] "subtype4" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype3"
[109] "subtype2" "subtype3" "subtype4" "subtype3" "subtype1" "subtype4"
[115] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[121] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
[133] "subtype4" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[139] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[157] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
[163] "subtype4" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
[169] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
[181] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[187] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[211] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[217] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[223] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[229] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[235] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[253] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
[259] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype4"
[265] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
D6V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1       2        0        3        13         1         0         2
  subtype2      14        0        3        22         1         0         2
  subtype3       8        0        2        22         1         0         0
  subtype4      25        1       17        46         5         1        15
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          0          4          1        2         0         0
  subtype2          1          4          5        2         3         0
  subtype3          3          9          9        4         6         0
  subtype4          4         25         14       20         5         1
D6V3, multiclass
          vv
clus       T0+T1  T2  T3  T4
  subtype1     0   2  24   3
  subtype2     3  13  35   6
  subtype3     1   8  47   8
  subtype4     2  30 127  21
D6V4, multiclass
          vv
clus        N0  N1  N2
  subtype1  19   6   4
  subtype2  42   9   6
  subtype3  34  15  15
  subtype4 101  50  30
D6V5, multiclass
          vv
clus        M0  M1 M1A M1B  MX
  subtype1  23   2   0   0   2
  subtype2  47   2   3   0   5
  subtype3  49   7   3   0   4
  subtype4 140  25   0   1  15
D6V6, multiclass
D6V7, binary
          cls
clus        0  1
  subtype1 17 12
  subtype2 21 36
  subtype3 30 34
  subtype4 87 94
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   12
  subtype2   21   36
  subtype3   30   34
  subtype4   87   94
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       21       30       87
  MALE         12       36       34       94
D6V8, binary
          cls
clus         0   1
  subtype1  26   3
  subtype2  47  10
  subtype3  55   9
  subtype4 165  16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26    3
  subtype2   47   10
  subtype3   55    9
  subtype4  165   16
                               clus
vv                              subtype1 subtype2 subtype3 subtype4
  COLON ADENOCARCINOMA                26       47       55      165
  COLON MUCINOUS ADENOCARCINOMA        3       10        9       16
D6V9, binary
          cls
clus         0   1
  subtype1   0  29
  subtype2   0  57
  subtype3   2  62
  subtype4   1 180
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   29
  subtype2    0   57
  subtype3    2   62
  subtype4    1  180
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        2        1
  YES       29       57       62      180
          vv
clus        R0  R2  RX
  subtype1  21   2   2
  subtype2  46   0   2
  subtype3  48   1   2
  subtype4 124  13  10
D6V10, multiclass
D6V11, continuous

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1  99  22
  subtype2 101  24
  subtype3  68  14
subtype1 subtype2 subtype3 
     121      125       82 
subtype1 subtype2 subtype3 
      22       24       14 
$subtype1
TCGA-A6-2675 TCGA-A6-2677 TCGA-A6-2682 TCGA-A6-3810 TCGA-A6-4105 TCGA-A6-5656 
       27.81        17.79        13.94         8.09        14.50        15.19 
TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5662 TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 
        9.40        11.24        14.89        23.64        10.52        11.44 
TCGA-A6-6138 TCGA-A6-6140 TCGA-A6-6142 TCGA-A6-6648 TCGA-A6-6650 TCGA-A6-6651 
        9.17        11.70        12.10        11.31         9.11         8.48 
TCGA-A6-6652 TCGA-A6-6782 TCGA-A6-A567 TCGA-A6-A56B TCGA-A6-A5ZU TCGA-AA-3489 
       14.96         6.21        61.84        52.44         3.81         1.02 
TCGA-AA-3495 TCGA-AA-3496 TCGA-AA-3660 TCGA-AA-3697 TCGA-AA-A00O TCGA-AA-A017 
        1.02         1.02         1.02         0.95        27.02        15.02 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A02K TCGA-AA-A02W TCGA-AD-6888 TCGA-AD-6890 
       26.01        20.98        13.97        40.96         4.21         0.79 
TCGA-AD-6901 TCGA-AD-6963 TCGA-AD-6965 TCGA-AD-A5EK TCGA-AM-5820 TCGA-AU-3779 
        1.02         0.10         0.20         0.43         0.46        14.47 
TCGA-AY-5543 TCGA-AY-A54L TCGA-AZ-5403 TCGA-AZ-6603 TCGA-AZ-6608 TCGA-CA-5256 
       15.75         5.19        62.79        29.56         1.94         2.14 
TCGA-CA-5797 TCGA-CA-6715 TCGA-CA-6716 TCGA-CA-6719 TCGA-CK-4948 TCGA-CK-5912 
        3.29         0.07         0.26         1.35       102.44        48.03 
TCGA-CK-5914 TCGA-CK-6748 TCGA-CM-4747 TCGA-CM-5344 TCGA-CM-5349 TCGA-CM-5862 
       21.99         2.01         8.02        16.04        19.04         5.03 
TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6161 TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 
       15.02        17.03        15.02        14.04        29.03        16.04 
TCGA-CM-6166 TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6676 TCGA-CM-6677 TCGA-CM-6678 
       21.96        13.02        15.02        11.08        11.08        11.01 
TCGA-CM-6679 TCGA-D5-5537 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6532 TCGA-D5-6533 
       10.06        14.99        13.51        11.51        18.25         1.32 
TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6898 TCGA-D5-6922 TCGA-D5-6924 TCGA-D5-6926 
        4.47        17.13         7.53        10.13        14.27         9.04 
TCGA-D5-6929 TCGA-D5-6932 TCGA-DM-A0X9 TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D7 
       13.38         0.62       119.70        38.20       130.65        13.28 
TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DB TCGA-DM-A1HA TCGA-DM-A282 TCGA-DM-A285 
       12.59       140.38        44.32       131.51       139.17         6.08 
TCGA-DM-A28G TCGA-DM-A28H TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6463 TCGA-F4-6808 
       60.79       117.07         8.58        13.38        13.61         0.46 
TCGA-F4-6809 TCGA-F4-6854 TCGA-G4-6293 TCGA-G4-6294 TCGA-G4-6297 TCGA-G4-6298 
        1.25         0.53       107.67        28.21        82.39        23.51 
TCGA-G4-6303 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6310 TCGA-G4-6311 TCGA-G4-6314 
       61.87        44.65        55.04        45.11        39.42        35.93 
TCGA-G4-6315 TCGA-G4-6317 TCGA-G4-6625 TCGA-G4-6626 TCGA-NH-A50T TCGA-QG-A5YV 
       36.72        36.00        91.76        46.75         4.11        26.96 
TCGA-QG-A5YX 
       17.29 

$subtype2
TCGA-A6-2674 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-3808 TCGA-A6-5661 TCGA-A6-5664 
       25.02        12.72        15.25         9.14        10.06        11.90 
TCGA-A6-5665 TCGA-A6-6141 TCGA-A6-6649 TCGA-A6-6653 TCGA-A6-6654 TCGA-A6-6780 
       13.28         8.35        10.78         9.27        13.12        11.64 
TCGA-A6-6781 TCGA-A6-A565 TCGA-A6-A566 TCGA-AA-3502 TCGA-AA-3663 TCGA-AA-3713 
        9.63        16.21        24.92         1.02         1.02         0.95 
TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A01P TCGA-AA-A02R 
        0.99         0.99         0.99         2.01        38.07        22.03 
TCGA-AD-5900 TCGA-AD-6548 TCGA-AD-6889 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6964 
        0.07         0.10        56.52         0.72         1.55         0.99 
TCGA-AM-5821 TCGA-AU-6004 TCGA-AY-6196 TCGA-AY-6197 TCGA-AY-6386 TCGA-AZ-4313 
        0.92         6.67         0.20        13.91        11.84        50.37 
TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-4614 TCGA-AZ-4615 TCGA-AZ-4616 TCGA-AZ-4684 
       58.39         1.41         5.65        32.94         5.13        65.00 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6605 
       61.41        49.41         6.74        12.10        99.98         5.23 
TCGA-AZ-6606 TCGA-AZ-6607 TCGA-CA-5254 TCGA-CA-5255 TCGA-CA-5796 TCGA-CA-6717 
       11.74         3.19         2.24         3.06         3.25         0.33 
TCGA-CA-6718 TCGA-CK-4947 TCGA-CK-4950 TCGA-CK-4951 TCGA-CK-4952 TCGA-CK-5913 
        0.10        17.52        40.31        70.16        15.58        28.04 
TCGA-CK-5916 TCGA-CK-6747 TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4751 TCGA-CM-5348 
       21.01         2.93       124.11         6.05        19.96        21.96 
TCGA-CM-5860 TCGA-CM-5861 TCGA-CM-5863 TCGA-CM-6162 TCGA-CM-6167 TCGA-CM-6168 
       16.01        15.02        15.02        12.00        14.99        12.99 
TCGA-CM-6171 TCGA-CM-6172 TCGA-CM-6674 TCGA-CM-6675 TCGA-CM-6680 TCGA-D5-5538 
       14.04        10.98        12.95        13.02        12.03        12.26 
TCGA-D5-5539 TCGA-D5-6529 TCGA-D5-6530 TCGA-D5-6531 TCGA-D5-6534 TCGA-D5-6535 
       19.59        20.19        20.42        17.75         7.92        15.12 
TCGA-D5-6536 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6920 TCGA-D5-6927 
       17.85        12.49        16.14        15.58        12.39         9.44 
TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6931 TCGA-DM-A0XD TCGA-DM-A1D6 TCGA-DM-A1DA 
       11.64         1.48        12.00        24.43        49.91         7.46 
TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A288 TCGA-DM-A28M TCGA-F4-6461 TCGA-F4-6569 
      135.65         7.73        14.01        95.18        11.11        13.41 
TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6806 TCGA-F4-6807 
        6.15         9.80         1.51         0.53         0.66         0.53 
TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6295 TCGA-G4-6299 TCGA-G4-6302 TCGA-G4-6304 
        9.86         0.66         8.35        74.56        43.04        53.62 
TCGA-G4-6309 TCGA-G4-6320 TCGA-G4-6321 TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 
       51.75        26.43        22.06        26.04        13.78        35.80 
TCGA-G4-6588 TCGA-G4-6627 TCGA-G4-6628 TCGA-NH-A50V TCGA-QG-A5Z2 
       26.17        47.15        52.96         5.06        14.76 

$subtype3
TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2679 TCGA-A6-2680 
       36.99        22.88        23.38        25.68        25.58        23.15 
TCGA-A6-2681 TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3809 TCGA-A6-4107 TCGA-AA-3488 
       22.06        16.57        10.92        10.29         7.59         5.00 
TCGA-AA-3494 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        1.02         1.02         0.99         1.02         2.01         0.99 
TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        1.02         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3856 TCGA-AA-3862 TCGA-AA-3939 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3950 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         2.01         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00         4.01        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01C TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E 
        1.02        33.04        35.01        39.06        51.95         2.93 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A03F TCGA-AA-A03J 
       39.95         2.01         5.03         0.92        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AZ-4308 TCGA-AZ-4681 TCGA-CM-4746 TCGA-CM-4748 
       16.31         0.95        75.22        83.80        22.98         7.04 
TCGA-CM-4750 TCGA-CM-4752 TCGA-CM-5341 TCGA-DM-A1D4 
        8.02         4.04        19.04        92.75 

subtype1 subtype2 subtype3 
    0.07     0.07     0.92 
subtype1 subtype2 subtype3 
  140.38   135.65    92.75 
subtype1 subtype2 subtype3 
  13.970   12.490   10.605 
[1] "0.1 - 140.4 (14.0)" "0.1 - 135.7 (12.5)" "0.9 - 92.8 (10.6)" 
  [1] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[295] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype2" "subtype1" "subtype1" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[295] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype2" "subtype1" "subtype1" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[295] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype2" "subtype1" "subtype1" "subtype2"
D7V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      19        0        8        35         1         1         6
  subtype2      21        1       11        44         2         0         4
  subtype3      26        0       12        41         6         0        12
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          5         17          8       15        11         0
  subtype2          3         19         13        9         3         1
  subtype3          5         14         14       18         1         0
D7V3, multiclass
          vv
clus       T0+T1  T2  T3  T4
  subtype1     3  22  90  17
  subtype2     4  18  92  18
  subtype3     4  30 102  14
D7V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 72 40 19
  subtype2 81 27 25
  subtype3 89 32 29
D7V5, multiclass
          vv
clus        M0  M1 M1A M1B  MX
  subtype1  83  20   6   0  22
  subtype2  99  11   0   1  19
  subtype3 128  18   1   0   0
D7V6, multiclass
D7V7, binary
          cls
clus        0  1
  subtype1 61 71
  subtype2 64 69
  subtype3 73 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   61   71
  subtype2   64   69
  subtype3   73   77
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       61       64       73
  MALE         71       69       77
D7V8, binary
          cls
clus         0   1
  subtype1 128   4
  subtype2 103  30
  subtype3 128  20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  128    4
  subtype2  103   30
  subtype3  128   20
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA               128      103      128
  COLON MUCINOUS ADENOCARCINOMA        4       30       20
D7V9, binary
          cls
clus         0   1
  subtype1   2 130
  subtype2   1 132
  subtype3   0 150
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  130
  subtype2    1  132
  subtype3    0  150
     clus
vv    subtype1 subtype2 subtype3
  NO         2        1        0
  YES      130      132      150
          vv
clus        R0  R1  R2  RX
  subtype1  82   0   5  10
  subtype2  83   2   2  14
  subtype3 128   1  16   0
D7V10, multiclass
D7V11, continuous

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  79  15
  subtype2 114  24
  subtype3  75  21
subtype1 subtype2 subtype3 
      94      138       96 
subtype1 subtype2 subtype3 
      15       24       21 
$subtype1
TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       36.99        22.88        25.02        23.38        17.79        25.68 
TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 
       25.58        23.15        22.06        16.57        10.92         9.14 
TCGA-A6-3809 TCGA-A6-3810 TCGA-A6-4107 TCGA-AA-3488 TCGA-AA-3494 TCGA-AA-3518 
       10.29         8.09         7.59         5.00         1.02         1.02 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         2.01         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3856 TCGA-AA-3862 TCGA-AA-3877 TCGA-AA-3939 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         0.99         1.02         2.01         2.01 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01C TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       20.98        15.02        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H 
       35.01        39.06        51.95         2.93        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02R TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        22.03        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AZ-4308 TCGA-AZ-4681 TCGA-CM-4746 TCGA-CM-4748 
       16.31         0.95        75.22        83.80        22.98         7.04 
TCGA-CM-4750 TCGA-CM-4752 TCGA-CM-5341 TCGA-CM-6161 
        8.02         4.04        19.04        15.02 

$subtype2
TCGA-A6-2675 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-4105 TCGA-A6-5656 TCGA-A6-5659 
       27.81        12.72        15.25        14.50        15.19         9.40 
TCGA-A6-5660 TCGA-A6-5662 TCGA-A6-5664 TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 
       11.24        14.89        11.90        23.64        10.52        11.44 
TCGA-A6-6138 TCGA-A6-6140 TCGA-A6-6142 TCGA-A6-6648 TCGA-A6-6650 TCGA-A6-6651 
        9.17        11.70        12.10        11.31         9.11         8.48 
TCGA-A6-6652 TCGA-A6-6654 TCGA-A6-6782 TCGA-A6-A567 TCGA-A6-A56B TCGA-A6-A5ZU 
       14.96        13.12         6.21        61.84        52.44         3.81 
TCGA-AA-3489 TCGA-AA-3495 TCGA-AA-3496 TCGA-AA-3660 TCGA-AA-3697 TCGA-AA-A01X 
        1.02         1.02         1.02         1.02         0.95        26.01 
TCGA-AA-A02K TCGA-AD-6548 TCGA-AD-6888 TCGA-AD-6899 TCGA-AD-6901 TCGA-AD-6963 
       13.97         0.10         4.21         1.55         1.02         0.10 
TCGA-AD-6964 TCGA-AD-6965 TCGA-AD-A5EK TCGA-AM-5820 TCGA-AU-3779 TCGA-AY-6196 
        0.99         0.20         0.43         0.46        14.47         0.20 
TCGA-AY-A54L TCGA-AZ-4323 TCGA-AZ-4684 TCGA-AZ-5403 TCGA-AZ-6603 TCGA-AZ-6605 
        5.19         1.41        65.00        62.79        29.56         5.23 
TCGA-AZ-6608 TCGA-CA-5256 TCGA-CA-5797 TCGA-CA-6715 TCGA-CA-6716 TCGA-CA-6717 
        1.94         2.14         3.29         0.07         0.26         0.33 
TCGA-CA-6719 TCGA-CK-4948 TCGA-CK-5912 TCGA-CK-5914 TCGA-CK-6748 TCGA-CM-4747 
        1.35       102.44        48.03        21.99         2.01         8.02 
TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5860 TCGA-CM-5862 TCGA-CM-5864 
       16.04        21.96        19.04        16.01         5.03        15.02 
TCGA-CM-5868 TCGA-CM-6162 TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 
       17.03        12.00        14.04        29.03        16.04        21.96 
TCGA-CM-6167 TCGA-CM-6168 TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6676 TCGA-CM-6678 
       14.99        12.99        13.02        15.02        11.08        11.01 
TCGA-CM-6679 TCGA-D5-5537 TCGA-D5-5538 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6531 
       10.06        14.99        12.26        13.51        11.51        17.75 
TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6534 TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6541 
       18.25         1.32         7.92         4.47        17.13        15.58 
TCGA-D5-6898 TCGA-D5-6922 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6929 TCGA-D5-6932 
        7.53        10.13        14.27         9.04        13.38         0.62 
TCGA-DM-A0X9 TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D7 TCGA-DM-A1D8 
      119.70        38.20       130.65        92.75        13.28        12.59 
TCGA-DM-A1D9 TCGA-DM-A1DB TCGA-DM-A282 TCGA-DM-A285 TCGA-DM-A28G TCGA-DM-A28H 
      140.38        44.32       139.17         6.08        60.79       117.07 
TCGA-DM-A28M TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6463 TCGA-F4-6704 TCGA-F4-6805 
       95.18         8.58        13.38        13.61         1.51         0.53 
TCGA-F4-6807 TCGA-F4-6808 TCGA-F4-6809 TCGA-F4-6854 TCGA-F4-6855 TCGA-G4-6293 
        0.53         0.46         1.25         0.53         9.86       107.67 
TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6302 TCGA-G4-6303 
       28.21         8.35        82.39        23.51        43.04        61.87 
TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6310 TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 
       44.65        55.04        45.11        39.42        35.93        36.72 
TCGA-G4-6317 TCGA-G4-6625 TCGA-G4-6626 TCGA-G4-6627 TCGA-NH-A50T TCGA-QG-A5YV 
       36.00        91.76        46.75        47.15         4.11        26.96 

$subtype3
TCGA-A6-2682 TCGA-A6-5661 TCGA-A6-5665 TCGA-A6-6141 TCGA-A6-6649 TCGA-A6-6653 
       13.94        10.06        13.28         8.35        10.78         9.27 
TCGA-A6-6780 TCGA-A6-6781 TCGA-A6-A565 TCGA-A6-A566 TCGA-AA-3502 TCGA-AA-3663 
       11.64         9.63        16.21        24.92         1.02         1.02 
TCGA-AA-3713 TCGA-AA-A01P TCGA-AA-A01Z TCGA-AD-5900 TCGA-AD-6889 TCGA-AD-6890 
        0.95        38.07        20.98         0.07        56.52         0.79 
TCGA-AD-6895 TCGA-AM-5821 TCGA-AU-6004 TCGA-AY-5543 TCGA-AY-6197 TCGA-AY-6386 
        0.72         0.92         6.67        15.75        13.91        11.84 
TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4614 TCGA-AZ-4615 TCGA-AZ-4616 TCGA-AZ-5407 
       50.37        58.39         5.65        32.94         5.13        61.41 
TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6606 TCGA-AZ-6607 
       49.41         6.74        12.10        99.98        11.74         3.19 
TCGA-CA-5254 TCGA-CA-5255 TCGA-CA-5796 TCGA-CA-6718 TCGA-CK-4947 TCGA-CK-4950 
        2.24         3.06         3.25         0.10        17.52        40.31 
TCGA-CK-4951 TCGA-CK-4952 TCGA-CK-5913 TCGA-CK-5916 TCGA-CK-6747 TCGA-CK-6751 
       70.16        15.58        28.04        21.01         2.93       124.11 
TCGA-CM-4743 TCGA-CM-4751 TCGA-CM-5861 TCGA-CM-5863 TCGA-CM-6171 TCGA-CM-6172 
        6.05        19.96        15.02        15.02        14.04        10.98 
TCGA-CM-6674 TCGA-CM-6675 TCGA-CM-6677 TCGA-CM-6680 TCGA-D5-5539 TCGA-D5-6529 
       12.95        13.02        11.08        12.03        19.59        20.19 
TCGA-D5-6530 TCGA-D5-6535 TCGA-D5-6536 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6920 
       20.42        15.12        17.85        12.49        16.14        12.39 
TCGA-D5-6927 TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6931 TCGA-DM-A0XD TCGA-DM-A1D6 
        9.44        11.64         1.48        12.00        24.43        49.91 
TCGA-DM-A1DA TCGA-DM-A1HA TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A288 TCGA-F4-6461 
        7.46       131.51       135.65         7.73        14.01        11.11 
TCGA-F4-6569 TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6806 TCGA-F4-6856 TCGA-G4-6299 
       13.41         6.15         9.80         0.66         0.66        74.56 
TCGA-G4-6304 TCGA-G4-6309 TCGA-G4-6320 TCGA-G4-6321 TCGA-G4-6322 TCGA-G4-6323 
       53.62        51.75        26.43        22.06        26.04        13.78 
TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6628 TCGA-NH-A50V TCGA-QG-A5YX TCGA-QG-A5Z2 
       35.80        26.17        52.96         5.06        17.29        14.76 

subtype1 subtype2 subtype3 
    0.92     0.07     0.07 
subtype1 subtype2 subtype3 
   83.80   140.38   135.65 
subtype1 subtype2 subtype3 
  10.605   13.070   13.595 
[1] "0.9 - 83.8 (10.6)"  "0.1 - 140.4 (13.1)" "0.1 - 135.7 (13.6)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[259] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[325] "subtype3" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[259] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[325] "subtype3" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[259] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[325] "subtype3" "subtype2" "subtype3" "subtype3"
D8V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      31        0       13        48         6         0        12
  subtype2      18        0        9        42         1         1         6
  subtype3      17        1        9        30         2         0         4
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          5         15         16       24         1         0
  subtype2          5         22         11       12        11         0
  subtype3          3         13          8        6         3         1
D8V3, multiclass
          vv
clus       T0+T1  T2  T3  T4
  subtype1     5  34 116  17
  subtype2     2  21 102  19
  subtype3     4  15  66  13
D8V4, multiclass
          vv
clus        N0  N1  N2
  subtype1 102  35  35
  subtype2  78  41  24
  subtype3  62  23  14
D8V5, multiclass
          vv
clus        M0  M1 M1A M1B  MX
  subtype1 144  24   1   0   0
  subtype2  95  17   6   0  23
  subtype3  71   8   0   1  18
D8V6, multiclass
D8V7, binary
          cls
clus        0  1
  subtype1 89 83
  subtype2 63 81
  subtype3 46 53
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   89   83
  subtype2   63   81
  subtype3   46   53
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       89       63       46
  MALE         83       81       53
D8V8, binary
          cls
clus         0   1
  subtype1 146  24
  subtype2 133  11
  subtype3  80  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  146   24
  subtype2  133   11
  subtype3   80   19
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA               146      133       80
  COLON MUCINOUS ADENOCARCINOMA       24       11       19
D8V9, binary
          cls
clus         0   1
  subtype1   0 172
  subtype2   3 141
  subtype3   0  99
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0  172
  subtype2    3  141
  subtype3    0   99
     clus
vv    subtype1 subtype2 subtype3
  NO         0        3        0
  YES      172      141       99
          vv
clus        R0  R1  R2  RX
  subtype1 146   1  20   0
  subtype2  88   0   2  11
  subtype3  59   2   1  13
D8V10, multiclass
D8V11, continuous

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 126  29
  subtype2  55  11
  subtype3  77  20
subtype1 subtype2 subtype3 
     155       66       97 
subtype1 subtype2 subtype3 
      29       11       20 
$subtype1
TCGA-A6-2675 TCGA-A6-4105 TCGA-A6-5656 TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5661 
       27.81        14.50        15.19         9.40        11.24        10.06 
TCGA-A6-5665 TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 TCGA-A6-6140 TCGA-A6-6142 
       13.28        23.64        10.52        11.44        11.70        12.10 
TCGA-A6-6648 TCGA-A6-6650 TCGA-A6-6653 TCGA-A6-6780 TCGA-A6-6782 TCGA-AA-3496 
       11.31         9.11         9.27        11.64         6.21         1.02 
TCGA-AA-3660 TCGA-AA-3663 TCGA-AA-3697 TCGA-AA-3713 TCGA-AD-5900 TCGA-AD-6548 
        1.02         1.02         0.95         0.95         0.07         0.10 
TCGA-AD-6888 TCGA-AD-6889 TCGA-AD-6890 TCGA-AD-6963 TCGA-AD-6965 TCGA-AM-5821 
        4.21        56.52         0.79         0.10         0.20         0.92 
TCGA-AU-3779 TCGA-AU-6004 TCGA-AY-5543 TCGA-AY-6196 TCGA-AY-6197 TCGA-AY-6386 
       14.47         6.67        15.75         0.20        13.91        11.84 
TCGA-AZ-4616 TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6606 
        5.13        61.41        49.41         6.74        12.10        11.74 
TCGA-AZ-6608 TCGA-CA-5254 TCGA-CA-5796 TCGA-CA-5797 TCGA-CA-6715 TCGA-CA-6716 
        1.94         2.24         3.25         3.29         0.07         0.26 
TCGA-CA-6719 TCGA-CK-4947 TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4952 TCGA-CK-5912 
        1.35        17.52       102.44        40.31        15.58        48.03 
TCGA-CK-5913 TCGA-CK-5914 TCGA-CK-5916 TCGA-CK-6747 TCGA-CK-6751 TCGA-CM-4743 
       28.04        21.99        21.01         2.93       124.11         6.05 
TCGA-CM-4751 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5860 TCGA-CM-5861 
       19.96        16.04        21.96        19.04        16.01        15.02 
TCGA-CM-5862 TCGA-CM-5863 TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6161 TCGA-CM-6163 
        5.03        15.02        15.02        17.03        15.02        14.04 
TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6171 
       29.03        16.04        21.96        13.02        15.02        14.04 
TCGA-CM-6172 TCGA-CM-6675 TCGA-CM-6676 TCGA-CM-6677 TCGA-CM-6678 TCGA-CM-6680 
       10.98        13.02        11.08        11.08        11.01        12.03 
TCGA-D5-5537 TCGA-D5-5538 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6529 TCGA-D5-6530 
       14.99        12.26        13.51        11.51        20.19        20.42 
TCGA-D5-6531 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6535 TCGA-D5-6536 TCGA-D5-6537 
       17.75        18.25         1.32        15.12        17.85         4.47 
TCGA-D5-6538 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6920 TCGA-D5-6923 
       17.13        12.49        16.14        15.58        12.39        12.39 
TCGA-D5-6929 TCGA-D5-6931 TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A0XF TCGA-DM-A1D0 
       13.38        12.00       119.70        24.43        38.20       130.65 
TCGA-DM-A1D4 TCGA-DM-A1D7 TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1DB 
       92.75        13.28        12.59       140.38         7.46        44.32 
TCGA-DM-A1HA TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A282 TCGA-DM-A285 TCGA-DM-A288 
      131.51       135.65         7.73       139.17         6.08        14.01 
TCGA-DM-A28A TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28G TCGA-DM-A28H 
       26.47        81.37       119.93        35.97        60.79       117.07 
TCGA-DM-A28K TCGA-DM-A28M TCGA-F4-6463 TCGA-F4-6570 TCGA-F4-6808 TCGA-F4-6855 
       98.24        95.18        13.61         6.15         0.46         9.86 
TCGA-G4-6293 TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6299 
      107.67        28.21         8.35        82.39        23.51        74.56 
TCGA-G4-6303 TCGA-G4-6304 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6309 TCGA-G4-6311 
       61.87        53.62        44.65        55.04        51.75        39.42 
TCGA-G4-6315 TCGA-G4-6317 TCGA-G4-6320 TCGA-G4-6321 TCGA-G4-6322 TCGA-G4-6323 
       36.72        36.00        26.43        22.06        26.04        13.78 
TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6625 TCGA-G4-6626 TCGA-G4-6628 
       35.80        26.17        91.76        46.75        52.96 

$subtype2
TCGA-A6-2681 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-3808 TCGA-A6-5657 TCGA-A6-5662 
       22.06        12.72        15.25         9.14        12.07        14.89 
TCGA-A6-5664 TCGA-A6-6138 TCGA-A6-6141 TCGA-A6-6649 TCGA-A6-6651 TCGA-A6-6652 
       11.90         9.17         8.35        10.78         8.48        14.96 
TCGA-A6-6654 TCGA-A6-6781 TCGA-AA-3489 TCGA-AA-A00O TCGA-AA-A01P TCGA-AA-A01X 
       13.12         9.63         1.02        27.02        38.07        26.01 
TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 TCGA-AD-6964 TCGA-AM-5820 TCGA-AZ-4323 
        0.72         1.55         1.02         0.99         0.46         1.41 
TCGA-AZ-5403 TCGA-AZ-6601 TCGA-AZ-6603 TCGA-AZ-6605 TCGA-AZ-6607 TCGA-CA-5255 
       62.79        99.98        29.56         5.23         3.19         3.06 
TCGA-CA-6717 TCGA-CA-6718 TCGA-CK-6748 TCGA-CM-4748 TCGA-CM-6162 TCGA-CM-6167 
        0.33         0.10         2.01         7.04        12.00        14.99 
TCGA-CM-6168 TCGA-CM-6674 TCGA-CM-6679 TCGA-D5-5539 TCGA-D5-6534 TCGA-D5-6898 
       12.99        12.95        10.06        19.59         7.92         7.53 
TCGA-D5-6922 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6927 TCGA-D5-6928 TCGA-D5-6930 
       10.13        14.27         9.04         9.44        11.64         1.48 
TCGA-D5-6932 TCGA-D5-7000 TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6461 TCGA-F4-6569 
        0.62        10.26         8.58        13.38        11.11        13.41 
TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6806 TCGA-F4-6807 TCGA-F4-6809 
        9.80         1.51         0.53         0.66         0.53         1.25 
TCGA-F4-6854 TCGA-F4-6856 TCGA-G4-6302 TCGA-G4-6310 TCGA-G4-6314 TCGA-G4-6627 
        0.53         0.66        43.04        45.11        35.93        47.15 

$subtype3
TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       36.99        22.88        25.02        23.38        17.79        25.68 
TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2682 TCGA-A6-2683 TCGA-A6-2686 TCGA-A6-3807 
       25.58        23.15        13.94        16.57        16.04        10.92 
TCGA-A6-3809 TCGA-A6-3810 TCGA-A6-4107 TCGA-AA-3488 TCGA-AA-3494 TCGA-AA-3495 
       10.29         8.09         7.59         5.00         1.02         1.02 
TCGA-AA-3502 TCGA-AA-3510 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        1.02         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3675 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        2.01         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3856 TCGA-AA-3862 TCGA-AA-3877 TCGA-AA-3939 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         0.99         1.02         2.01         2.01 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00L 
        0.99         1.02         0.99        19.00        18.02        17.00 
TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F 
       27.02        17.00        14.99        20.98         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z 
       12.00        35.01         1.02        33.04        35.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       39.06        51.95         2.93        39.95         2.01         5.03 
TCGA-AA-A02K TCGA-AA-A02O TCGA-AA-A02R TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       13.97         0.92        22.03        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AZ-4308 TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4614 
       16.31         0.95        75.22        50.37        58.39         5.65 
TCGA-AZ-4615 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 TCGA-CA-5256 TCGA-CK-4951 
       32.94        83.80        22.36        65.00         2.14        70.16 
TCGA-CM-4744 TCGA-CM-4746 TCGA-CM-4747 TCGA-CM-4750 TCGA-CM-4752 TCGA-CM-5341 
        7.04        22.98         8.02         8.02         4.04        19.04 
TCGA-DM-A1D6 
       49.91 

subtype1 subtype2 subtype3 
    0.07     0.10     0.92 
subtype1 subtype2 subtype3 
  140.38    99.98    83.80 
subtype1 subtype2 subtype3 
  15.020    9.715    8.020 
[1] "0.1 - 140.4 (15.0)" "0.1 - 100.0 (9.7)"  "0.9 - 83.8 (8.0)"  
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
D9V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      24        1        9        53         2         1         8
  subtype2       7        0        6        18         0         0         2
  subtype3      35        0       18        44         6         0        12
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          5         23         11       11         7         1
  subtype2          3         10          8        4         4         0
  subtype3          4         15         13       27         5         0
D9V3, multiclass
          vv
clus       T0+T1  T2  T3  T4
  subtype1     5  24 115  15
  subtype2     0   9  46  11
  subtype3     6  36 118  20
D9V4, multiclass
          vv
clus        N0  N1  N2
  subtype1  98  39  22
  subtype2  33  19  14
  subtype3 108  37  35
D9V5, multiclass
          vv
clus        M0  M1 M1A M1B  MX
  subtype1 113  12   5   1  26
  subtype2  48   8   0   0   9
  subtype3 144  30   2   0   1
D9V6, multiclass
D9V7, binary
          cls
clus        0  1
  subtype1 74 86
  subtype2 27 39
  subtype3 90 90
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   74   86
  subtype2   27   39
  subtype3   90   90
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       74       27       90
  MALE         86       39       90
D9V8, binary
          cls
clus         0   1
  subtype1 145  15
  subtype2  53  13
  subtype3 153  25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  145   15
  subtype2   53   13
  subtype3  153   25
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA               145       53      153
  COLON MUCINOUS ADENOCARCINOMA       15       13       25
D9V9, binary
          cls
clus         0   1
  subtype1   0 160
  subtype2   2  64
  subtype3   1 179
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0  160
  subtype2    2   64
  subtype3    1  179
     clus
vv    subtype1 subtype2 subtype3
  NO         0        2        1
  YES      160       64      179
          vv
clus        R0  R1  R2  RX
  subtype1  92   1   2  15
  subtype2  43   0   0   5
  subtype3 145   2  23   2
D9V10, multiclass
D9V11, continuous

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  62  15
  subtype2  80  21
  subtype3 116  24
subtype1 subtype2 subtype3 
      77      101      140 
subtype1 subtype2 subtype3 
      15       21       24 
$subtype1
TCGA-A6-4105 TCGA-A6-5661 TCGA-A6-5665 TCGA-A6-5666 TCGA-A6-6137 TCGA-A6-6140 
       14.50        10.06        13.28        23.64        11.44        11.70 
TCGA-A6-6141 TCGA-A6-6648 TCGA-A6-6650 TCGA-A6-6653 TCGA-A6-6780 TCGA-AA-3496 
        8.35        11.31         9.11         9.27        11.64         1.02 
TCGA-AA-3502 TCGA-AA-3510 TCGA-AA-3518 TCGA-AA-3660 TCGA-AA-3663 TCGA-AA-3713 
        1.02         1.02         1.02         1.02         1.02         0.95 
TCGA-AA-A010 TCGA-AD-6888 TCGA-AD-6889 TCGA-AD-6890 TCGA-AD-6965 TCGA-AM-5821 
       20.98         4.21        56.52         0.79         0.20         0.92 
TCGA-AY-5543 TCGA-AY-6197 TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6606 TCGA-AZ-6608 
       15.75        13.91        61.41        49.41        11.74         1.94 
TCGA-CA-5796 TCGA-CK-4952 TCGA-CK-5912 TCGA-CK-5913 TCGA-CK-6747 TCGA-CK-6751 
        3.25        15.58        48.03        28.04         2.93       124.11 
TCGA-CM-4743 TCGA-CM-4746 TCGA-CM-4751 TCGA-CM-5862 TCGA-CM-5864 TCGA-CM-6171 
        6.05        22.98        19.96         5.03        15.02        14.04 
TCGA-CM-6172 TCGA-CM-6675 TCGA-D5-6529 TCGA-D5-6530 TCGA-D5-6540 TCGA-D5-6920 
       10.98        13.02        20.19        20.42        16.14        12.39 
TCGA-D5-6923 TCGA-D5-6928 TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A1D0 TCGA-DM-A1D4 
       12.39        11.64       119.70        24.43       130.65        92.75 
TCGA-DM-A1DA TCGA-DM-A1DB TCGA-DM-A1HA TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A288 
        7.46        44.32       131.51       135.65         7.73        14.01 
TCGA-DM-A28A TCGA-DM-A28H TCGA-DM-A28K TCGA-DM-A28M TCGA-F4-6461 TCGA-F4-6570 
       26.47       117.07        98.24        95.18        11.11         6.15 
TCGA-F4-6808 TCGA-G4-6293 TCGA-G4-6299 TCGA-G4-6304 TCGA-G4-6306 TCGA-G4-6309 
        0.46       107.67        74.56        53.62        44.65        51.75 
TCGA-G4-6322 TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6626 TCGA-G4-6628 
       26.04        35.80        26.17        46.75        52.96 

$subtype2
TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       36.99        22.88        25.02        23.38        17.79        25.68 
TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 TCGA-A6-2682 TCGA-A6-2683 TCGA-A6-2684 
       25.58        23.15        22.06        13.94        16.57        12.72 
TCGA-A6-2685 TCGA-A6-2686 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3809 TCGA-A6-3810 
       15.25        16.04        10.92         9.14        10.29         8.09 
TCGA-A6-4107 TCGA-AA-3488 TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3526 TCGA-AA-3555 
        7.59         5.00         1.02         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3675 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        1.02         2.01         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3856 TCGA-AA-3862 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         1.02         2.01 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00J 
        2.01         0.99         1.02         0.99        19.00        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A01D 
       17.00        27.02        27.02        17.00        14.99         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        12.00        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E TCGA-AA-A02F 
       35.01        20.98        39.06        51.95         2.93        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02K TCGA-AA-A02O TCGA-AA-A02R TCGA-AA-A02Y 
        2.01         5.03        13.97         0.92        22.03        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AZ-4308 TCGA-AZ-4313 
       18.02        40.93        16.31         0.95        75.22        50.37 
TCGA-AZ-4315 TCGA-AZ-4614 TCGA-AZ-4615 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 
       58.39         5.65        32.94        83.80        22.36        65.00 
TCGA-AZ-6599 TCGA-CA-5256 TCGA-CA-6715 TCGA-CK-4951 TCGA-CM-4744 TCGA-CM-4747 
        6.74         2.14         0.07        70.16         7.04         8.02 
TCGA-CM-4748 TCGA-CM-4750 TCGA-CM-4752 TCGA-CM-5341 TCGA-D5-6929 
        7.04         8.02         4.04        19.04        13.38 

$subtype3
TCGA-A6-2675 TCGA-A6-5656 TCGA-A6-5657 TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5662 
       27.81        15.19        12.07         9.40        11.24        14.89 
TCGA-A6-5664 TCGA-A6-5667 TCGA-A6-6138 TCGA-A6-6142 TCGA-A6-6649 TCGA-A6-6651 
       11.90        10.52         9.17        12.10        10.78         8.48 
TCGA-A6-6652 TCGA-A6-6654 TCGA-A6-6781 TCGA-A6-6782 TCGA-AA-3489 TCGA-AA-3697 
       14.96        13.12         9.63         6.21         1.02         0.95 
TCGA-AA-A01X TCGA-AD-5900 TCGA-AD-6548 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 
       26.01         0.07         0.10         0.72         1.55         1.02 
TCGA-AD-6963 TCGA-AD-6964 TCGA-AM-5820 TCGA-AU-3779 TCGA-AU-6004 TCGA-AY-6196 
        0.10         0.99         0.46        14.47         6.67         0.20 
TCGA-AY-6386 TCGA-AZ-4323 TCGA-AZ-4616 TCGA-AZ-5403 TCGA-AZ-6600 TCGA-AZ-6601 
       11.84         1.41         5.13        62.79        12.10        99.98 
TCGA-AZ-6603 TCGA-AZ-6605 TCGA-AZ-6607 TCGA-CA-5254 TCGA-CA-5255 TCGA-CA-5797 
       29.56         5.23         3.19         2.24         3.06         3.29 
TCGA-CA-6716 TCGA-CA-6717 TCGA-CA-6718 TCGA-CA-6719 TCGA-CK-4947 TCGA-CK-4948 
        0.26         0.33         0.10         1.35        17.52       102.44 
TCGA-CK-4950 TCGA-CK-5914 TCGA-CK-5916 TCGA-CK-6748 TCGA-CM-5344 TCGA-CM-5348 
       40.31        21.99        21.01         2.01        16.04        21.96 
TCGA-CM-5349 TCGA-CM-5860 TCGA-CM-5861 TCGA-CM-5863 TCGA-CM-5868 TCGA-CM-6161 
       19.04        16.01        15.02        15.02        17.03        15.02 
TCGA-CM-6162 TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6167 
       12.00        14.04        29.03        16.04        21.96        14.99 
TCGA-CM-6168 TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6674 TCGA-CM-6676 TCGA-CM-6677 
       12.99        13.02        15.02        12.95        11.08        11.08 
TCGA-CM-6678 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5537 TCGA-D5-5538 TCGA-D5-5539 
       11.01        10.06        12.03        14.99        12.26        19.59 
TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6531 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6534 
       13.51        11.51        17.75        18.25         1.32         7.92 
TCGA-D5-6535 TCGA-D5-6536 TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6539 TCGA-D5-6541 
       15.12        17.85         4.47        17.13        12.49        15.58 
TCGA-D5-6898 TCGA-D5-6922 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6927 TCGA-D5-6930 
        7.53        10.13        14.27         9.04         9.44         1.48 
TCGA-D5-6931 TCGA-D5-6932 TCGA-D5-7000 TCGA-DM-A0XF TCGA-DM-A1D6 TCGA-DM-A1D7 
       12.00         0.62        10.26        38.20        49.91        13.28 
TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A282 TCGA-DM-A285 TCGA-DM-A28C TCGA-DM-A28E 
       12.59       140.38       139.17         6.08        81.37       119.93 
TCGA-DM-A28F TCGA-DM-A28G TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6463 TCGA-F4-6569 
       35.97        60.79         8.58        13.38        13.61        13.41 
TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6806 TCGA-F4-6807 TCGA-F4-6809 
        9.80         1.51         0.53         0.66         0.53         1.25 
TCGA-F4-6854 TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 
        0.53         9.86         0.66        28.21         8.35        82.39 
TCGA-G4-6298 TCGA-G4-6302 TCGA-G4-6303 TCGA-G4-6307 TCGA-G4-6310 TCGA-G4-6311 
       23.51        43.04        61.87        55.04        45.11        39.42 
TCGA-G4-6314 TCGA-G4-6315 TCGA-G4-6317 TCGA-G4-6320 TCGA-G4-6321 TCGA-G4-6323 
       35.93        36.72        36.00        26.43        22.06        13.78 
TCGA-G4-6625 TCGA-G4-6627 
       91.76        47.15 

subtype1 subtype2 subtype3 
    0.20     0.07     0.07 
subtype1 subtype2 subtype3 
  135.65    83.80   140.38 
subtype1 subtype2 subtype3 
   14.04     8.09    12.77 
[1] "0.2 - 135.7 (14.0)" "0.1 - 83.8 (8.1)"   "0.1 - 140.4 (12.8)"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
D10V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      13        0        5        32         3         1         3
  subtype2      35        0       17        44         4         0        14
  subtype3      18        1       11        39         1         0         5
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          1          7          7        3         3         1
  subtype2          4         16         14       28         5         0
  subtype3          7         25         11       11         8         0
D10V3, multiclass
          vv
clus       T0+T1  T2  T3  T4
  subtype1     3  14  55   9
  subtype2     6  36 121  19
  subtype3     2  19 103  18
D10V4, multiclass
          vv
clus        N0  N1  N2
  subtype1  57  10  13
  subtype2 105  41  36
  subtype3  77  44  22
D10V5, multiclass
          vv
clus        M0  M1 M1A M1B  MX
  subtype1  63   4   2   1  10
  subtype2 145  31   2   0   1
  subtype3  97  15   3   0  25
D10V6, multiclass
D10V7, binary
          cls
clus        0  1
  subtype1 34 47
  subtype2 93 89
  subtype3 64 79
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34   47
  subtype2   93   89
  subtype3   64   79
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       34       93       64
  MALE         47       89       79
D10V8, binary
          cls
clus         0   1
  subtype1  71  10
  subtype2 156  24
  subtype3 124  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   71   10
  subtype2  156   24
  subtype3  124   19
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA                71      156      124
  COLON MUCINOUS ADENOCARCINOMA       10       24       19
D10V9, binary
          cls
clus         0   1
  subtype1   0  81
  subtype2   1 181
  subtype3   2 141
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   81
  subtype2    1  181
  subtype3    2  141
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        2
  YES       81      181      141
          vv
clus        R0  R1  R2  RX
  subtype1  42   0   2   6
  subtype2 147   2  23   2
  subtype3  91   1   0  14
D10V10, multiclass
D10V11, continuous

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 60 15
  subtype2 61 15
  subtype3 53 10
subtype1 subtype2 subtype3 
      75       76       63 
subtype1 subtype2 subtype3 
      15       15       10 
$subtype1
TCGA-A6-2675 TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5666 TCGA-A6-6137 TCGA-A6-6138 
       27.81         9.40        11.24        23.64        11.44         9.17 
TCGA-A6-6140 TCGA-A6-6650 TCGA-A6-6652 TCGA-AA-3496 TCGA-AA-3660 TCGA-AA-3697 
       11.70         9.11        14.96         1.02         1.02         0.95 
TCGA-AD-6890 TCGA-AD-6965 TCGA-AU-3779 TCGA-AZ-6603 TCGA-AZ-6608 TCGA-CA-5797 
        0.79         0.20        14.47        29.56         1.94         3.29 
TCGA-CA-6715 TCGA-CA-6716 TCGA-CA-6719 TCGA-CK-5912 TCGA-CK-5914 TCGA-CM-5860 
        0.07         0.26         1.35        48.03        21.99        16.01 
TCGA-CM-5862 TCGA-CM-5864 TCGA-CM-6161 TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6676 
        5.03        15.02        15.02        13.02        15.02        11.08 
TCGA-CM-6678 TCGA-D5-5537 TCGA-D5-5538 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6529 
       11.01        14.99        12.26        13.51        11.51        20.19 
TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6538 TCGA-D5-6541 TCGA-D5-6922 TCGA-D5-6923 
       18.25         1.32        17.13        15.58        10.13        12.39 
TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6929 TCGA-D5-6932 TCGA-DM-A0X9 TCGA-DM-A0XF 
       14.27         9.04        13.38         0.62       119.70        38.20 
TCGA-DM-A1D0 TCGA-DM-A1D7 TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1DB 
      130.65        13.28        12.59       140.38         7.46        44.32 
TCGA-DM-A1HA TCGA-DM-A282 TCGA-DM-A28A TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F 
      131.51       139.17        26.47        81.37       119.93        35.97 
TCGA-DM-A28G TCGA-DM-A28H TCGA-F4-6459 TCGA-F4-6808 TCGA-F4-6855 TCGA-G4-6293 
       60.79       117.07         8.58         0.46         9.86       107.67 
TCGA-G4-6294 TCGA-G4-6297 TCGA-G4-6299 TCGA-G4-6303 TCGA-G4-6306 TCGA-G4-6307 
       28.21        82.39        74.56        61.87        44.65        55.04 
TCGA-G4-6311 TCGA-G4-6315 TCGA-G4-6317 
       39.42        36.72        36.00 

$subtype2
TCGA-A6-4105 TCGA-A6-5661 TCGA-A6-5665 TCGA-A6-6648 TCGA-A6-6653 TCGA-A6-6780 
       14.50        10.06        13.28        11.31         9.27        11.64 
TCGA-A6-6781 TCGA-AA-3663 TCGA-AA-3713 TCGA-AD-5900 TCGA-AD-6548 TCGA-AD-6888 
        9.63         1.02         0.95         0.07         0.10         4.21 
TCGA-AD-6889 TCGA-AD-6895 TCGA-AD-6963 TCGA-AM-5821 TCGA-AU-6004 TCGA-AY-5543 
       56.52         0.72         0.10         0.92         6.67        15.75 
TCGA-AY-6197 TCGA-AY-6386 TCGA-AZ-4616 TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 
       13.91        11.84         5.13        61.41        49.41         6.74 
TCGA-AZ-6601 TCGA-AZ-6606 TCGA-CA-5254 TCGA-CA-5796 TCGA-CA-6718 TCGA-CK-4947 
       99.98        11.74         2.24         3.25         0.10        17.52 
TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4952 TCGA-CK-5913 TCGA-CK-5916 TCGA-CK-6747 
      102.44        40.31        15.58        28.04        21.01         2.93 
TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4751 TCGA-CM-5861 TCGA-CM-6162 TCGA-CM-6171 
      124.11         6.05        19.96        15.02        12.00        14.04 
TCGA-CM-6172 TCGA-CM-6675 TCGA-D5-6530 TCGA-D5-6535 TCGA-D5-6537 TCGA-D5-6539 
       10.98        13.02        20.42        15.12         4.47        12.49 
TCGA-D5-6540 TCGA-D5-6920 TCGA-D5-6927 TCGA-D5-6928 TCGA-D5-6931 TCGA-D5-7000 
       16.14        12.39         9.44        11.64        12.00        10.26 
TCGA-DM-A0XD TCGA-DM-A1D4 TCGA-DM-A1D6 TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A288 
       24.43        92.75        49.91       135.65         7.73        14.01 
TCGA-DM-A28K TCGA-DM-A28M TCGA-F4-6570 TCGA-F4-6806 TCGA-F4-6856 TCGA-G4-6295 
       98.24        95.18         6.15         0.66         0.66         8.35 
TCGA-G4-6304 TCGA-G4-6309 TCGA-G4-6321 TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 
       53.62        51.75        22.06        26.04        13.78        35.80 
TCGA-G4-6588 TCGA-G4-6625 TCGA-G4-6626 TCGA-G4-6628 
       26.17        91.76        46.75        52.96 

$subtype3
TCGA-A6-5656 TCGA-A6-5657 TCGA-A6-5662 TCGA-A6-5664 TCGA-A6-5667 TCGA-A6-6141 
       15.19        12.07        14.89        11.90        10.52         8.35 
TCGA-A6-6142 TCGA-A6-6649 TCGA-A6-6651 TCGA-A6-6654 TCGA-A6-6782 TCGA-AA-3489 
       12.10        10.78         8.48        13.12         6.21         1.02 
TCGA-AD-6899 TCGA-AD-6901 TCGA-AD-6964 TCGA-AM-5820 TCGA-AY-6196 TCGA-AZ-4323 
        1.55         1.02         0.99         0.46         0.20         1.41 
TCGA-AZ-5403 TCGA-AZ-6600 TCGA-AZ-6605 TCGA-AZ-6607 TCGA-CA-5255 TCGA-CA-6717 
       62.79        12.10         5.23         3.19         3.06         0.33 
TCGA-CK-6748 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5863 TCGA-CM-5868 
        2.01        16.04        21.96        19.04        15.02        17.03 
TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6167 TCGA-CM-6168 
       14.04        29.03        16.04        21.96        14.99        12.99 
TCGA-CM-6674 TCGA-CM-6677 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5539 TCGA-D5-6531 
       12.95        11.08        10.06        12.03        19.59        17.75 
TCGA-D5-6534 TCGA-D5-6536 TCGA-D5-6898 TCGA-D5-6930 TCGA-DM-A285 TCGA-F4-6460 
        7.92        17.85         7.53         1.48         6.08        13.38 
TCGA-F4-6461 TCGA-F4-6463 TCGA-F4-6569 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 
       11.11        13.61        13.41         9.80         1.51         0.53 
TCGA-F4-6807 TCGA-F4-6809 TCGA-F4-6854 TCGA-G4-6298 TCGA-G4-6302 TCGA-G4-6310 
        0.53         1.25         0.53        23.51        43.04        45.11 
TCGA-G4-6314 TCGA-G4-6320 TCGA-G4-6627 
       35.93        26.43        47.15 

subtype1 subtype2 subtype3 
    0.07     0.07     0.20 
subtype1 subtype2 subtype3 
  140.38   135.65    62.79 
subtype1 subtype2 subtype3 
   14.96    13.15    12.03 
[1] "0.1 - 140.4 (15.0)" "0.1 - 135.7 (13.1)" "0.2 - 62.8 (12.0)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype3" "subtype2"
D11V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1      10        0        4        25         0         1         5
  subtype2      15        1        7        26         2         0         2
  subtype3       5        0        4        18         1         0         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          4          9          8        6         3         0
  subtype2          3         10          3        3         3         1
  subtype3          1         13          7        6         5         0
D11V3, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     2 12 58  7
  subtype2     2 15 53  7
  subtype3     1  4 46 12
D11V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 45 20 14
  subtype2 55 16  6
  subtype3 29 19 15
D11V5, multiclass
          vv
clus       M0 M1 M1A M1B MX
  subtype1 59  7   2   0 10
  subtype2 55  4   1   1 16
  subtype3 40  9   2   0 10
D11V6, multiclass
D11V7, binary
          cls
clus        0  1
  subtype1 30 49
  subtype2 39 39
  subtype3 27 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   49
  subtype2   39   39
  subtype3   27   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       30       39       27
  MALE         49       39       36
D11V8, binary
          cls
clus        0  1
  subtype1 78  1
  subtype2 62 16
  subtype3 51 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   78    1
  subtype2   62   16
  subtype3   51   12
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA                78       62       51
  COLON MUCINOUS ADENOCARCINOMA        1       16       12
D11V9, binary
          cls
clus        0  1
  subtype1  1 78
  subtype2  0 78
  subtype3  1 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   78
  subtype2    0   78
  subtype3    1   62
     clus
vv    subtype1 subtype2 subtype3
  NO         1        0        1
  YES       78       78       62
          vv
clus       R0 R1 R2 RX
  subtype1 43  0  1  7
  subtype2 43  1  1 10
  subtype3 42  0  0  3
D11V10, multiclass
D11V11, continuous

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2       0  1
  subtype1 17  3
  subtype2 70 16
  subtype3 87 21
subtype1 subtype2 subtype3 
      20       86      108 
subtype1 subtype2 subtype3 
       3       16       21 
$subtype1
TCGA-A6-5664 TCGA-CA-6715 TCGA-CA-6716 TCGA-CK-5914 TCGA-CM-6161 TCGA-CM-6166 
       11.90         0.07         0.26        21.99        15.02        21.96 
TCGA-D5-5540 TCGA-D5-6533 TCGA-D5-6538 TCGA-D5-6924 TCGA-D5-6929 TCGA-DM-A0XF 
       13.51         1.32        17.13        14.27        13.38        38.20 
TCGA-DM-A282 TCGA-DM-A28G TCGA-F4-6460 TCGA-F4-6463 TCGA-G4-6295 TCGA-G4-6298 
      139.17        60.79        13.38        13.61         8.35        23.51 
TCGA-G4-6314 TCGA-G4-6315 
       35.93        36.72 

$subtype2
TCGA-A6-5656 TCGA-A6-5657 TCGA-A6-5662 TCGA-A6-5667 TCGA-A6-6138 TCGA-A6-6141 
       15.19        12.07        14.89        10.52         9.17         8.35 
TCGA-A6-6649 TCGA-A6-6651 TCGA-A6-6652 TCGA-A6-6654 TCGA-A6-6781 TCGA-A6-6782 
       10.78         8.48        14.96        13.12         9.63         6.21 
TCGA-AA-3489 TCGA-AD-5900 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 TCGA-AM-5820 
        1.02         0.07         0.72         1.55         1.02         0.46 
TCGA-AM-5821 TCGA-AU-6004 TCGA-AY-6196 TCGA-AZ-4323 TCGA-AZ-4616 TCGA-AZ-5403 
        0.92         6.67         0.20         1.41         5.13        62.79 
TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6603 TCGA-AZ-6605 TCGA-AZ-6607 TCGA-CA-5254 
       12.10        99.98        29.56         5.23         3.19         2.24 
TCGA-CA-5255 TCGA-CA-6717 TCGA-CA-6718 TCGA-CA-6719 TCGA-CK-5916 TCGA-CK-6748 
        3.06         0.33         0.10         1.35        21.01         2.01 
TCGA-CM-4751 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5861 TCGA-CM-5863 
       19.96        16.04        21.96        19.04        15.02        15.02 
TCGA-CM-5868 TCGA-CM-6162 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6167 TCGA-CM-6168 
       17.03        12.00        29.03        16.04        14.99        12.99 
TCGA-CM-6674 TCGA-CM-6678 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5539 TCGA-D5-6531 
       12.95        11.01        10.06        12.03        19.59        17.75 
TCGA-D5-6534 TCGA-D5-6536 TCGA-D5-6898 TCGA-D5-6922 TCGA-D5-6926 TCGA-D5-6927 
        7.92        17.85         7.53        10.13         9.04         9.44 
TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6931 TCGA-D5-6932 TCGA-D5-7000 TCGA-DM-A1D6 
       11.64         1.48        12.00         0.62        10.26        49.91 
TCGA-F4-6459 TCGA-F4-6461 TCGA-F4-6569 TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6704 
        8.58        11.11        13.41         6.15         9.80         1.51 
TCGA-F4-6805 TCGA-F4-6807 TCGA-F4-6809 TCGA-F4-6854 TCGA-F4-6855 TCGA-F4-6856 
        0.53         0.53         1.25         0.53         9.86         0.66 
TCGA-G4-6299 TCGA-G4-6302 TCGA-G4-6303 TCGA-G4-6310 TCGA-G4-6320 TCGA-G4-6321 
       74.56        43.04        61.87        45.11        26.43        22.06 
TCGA-G4-6627 TCGA-G4-6628 
       47.15        52.96 

$subtype3
TCGA-A6-2675 TCGA-A6-4105 TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5661 TCGA-A6-5665 
       27.81        14.50         9.40        11.24        10.06        13.28 
TCGA-A6-5666 TCGA-A6-6137 TCGA-A6-6140 TCGA-A6-6142 TCGA-A6-6648 TCGA-A6-6650 
       23.64        11.44        11.70        12.10        11.31         9.11 
TCGA-A6-6653 TCGA-A6-6780 TCGA-AA-3496 TCGA-AA-3660 TCGA-AA-3663 TCGA-AA-3697 
        9.27        11.64         1.02         1.02         1.02         0.95 
TCGA-AA-3713 TCGA-AD-6548 TCGA-AD-6888 TCGA-AD-6889 TCGA-AD-6890 TCGA-AD-6963 
        0.95         0.10         4.21        56.52         0.79         0.10 
TCGA-AD-6964 TCGA-AD-6965 TCGA-AU-3779 TCGA-AY-5543 TCGA-AY-6197 TCGA-AY-6386 
        0.99         0.20        14.47        15.75        13.91        11.84 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6606 TCGA-AZ-6608 TCGA-CA-5796 
       61.41        49.41         6.74        11.74         1.94         3.25 
TCGA-CA-5797 TCGA-CK-4947 TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4952 TCGA-CK-5912 
        3.29        17.52       102.44        40.31        15.58        48.03 
TCGA-CK-5913 TCGA-CK-6747 TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-5860 TCGA-CM-5862 
       28.04         2.93       124.11         6.05        16.01         5.03 
TCGA-CM-5864 TCGA-CM-6163 TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6171 TCGA-CM-6172 
       15.02        14.04        13.02        15.02        14.04        10.98 
TCGA-CM-6675 TCGA-CM-6676 TCGA-CM-6677 TCGA-D5-5537 TCGA-D5-5538 TCGA-D5-5541 
       13.02        11.08        11.08        14.99        12.26        11.51 
TCGA-D5-6529 TCGA-D5-6530 TCGA-D5-6532 TCGA-D5-6535 TCGA-D5-6537 TCGA-D5-6539 
       20.19        20.42        18.25        15.12         4.47        12.49 
TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6920 TCGA-D5-6923 TCGA-DM-A0X9 TCGA-DM-A0XD 
       16.14        15.58        12.39        12.39       119.70        24.43 
TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D7 TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA 
      130.65        92.75        13.28        12.59       140.38         7.46 
TCGA-DM-A1DB TCGA-DM-A1HA TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A285 TCGA-DM-A288 
       44.32       131.51       135.65         7.73         6.08        14.01 
TCGA-DM-A28A TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28H TCGA-DM-A28K 
       26.47        81.37       119.93        35.97       117.07        98.24 
TCGA-DM-A28M TCGA-F4-6806 TCGA-F4-6808 TCGA-G4-6293 TCGA-G4-6294 TCGA-G4-6297 
       95.18         0.66         0.46       107.67        28.21        82.39 
TCGA-G4-6304 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6309 TCGA-G4-6311 TCGA-G4-6317 
       53.62        44.65        55.04        51.75        39.42        36.00 
TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6625 TCGA-G4-6626 
       26.04        13.78        35.80        26.17        91.76        46.75 

subtype1 subtype2 subtype3 
    0.07     0.07     0.10 
subtype1 subtype2 subtype3 
  139.17    99.98   140.38 
subtype1 subtype2 subtype3 
  14.645   10.390   14.255 
[1] "0.1 - 139.2 (14.6)" "0.1 - 100.0 (10.4)" "0.1 - 140.4 (14.3)"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype2"
D12V2, continuous
          vv
clus       STAGE I STAGE IA STAGE II STAGE IIA STAGE IIB STAGE IIC STAGE III
  subtype1       3        0        2         5         0         0         1
  subtype2      10        0        7        25         1         0         2
  subtype3      17        1        6        39         2         1         5
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  subtype1          0          5          2        3         0         0
  subtype2          3         14          9        6         6         0
  subtype3          5         13          7        6         5         1
D12V3, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     0  3 15  3
  subtype2     1 11 61 13
  subtype3     4 17 81 10
D12V4, multiclass
          vv
clus       N0 N1 N2
  subtype1 11  6  4
  subtype2 45 26 15
  subtype3 73 23 16
D12V5, multiclass
          vv
clus       M0 M1 M1A M1B MX
  subtype1 14  3   0   0  4
  subtype2 60 10   2   0 13
  subtype3 80  7   3   1 19
D12V6, multiclass
D12V7, binary
          cls
clus        0  1
  subtype1 10 11
  subtype2 36 50
  subtype3 50 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   11
  subtype2   36   50
  subtype3   50   63
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       10       36       50
  MALE         11       50       63
D12V8, binary
          cls
clus         0   1
  subtype1  19   2
  subtype2  69  17
  subtype3 103  10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19    2
  subtype2   69   17
  subtype3  103   10
                               clus
vv                              subtype1 subtype2 subtype3
  COLON ADENOCARCINOMA                19       69      103
  COLON MUCINOUS ADENOCARCINOMA        2       17       10
D12V9, binary
          cls
clus         0   1
  subtype1   0  21
  subtype2   2  84
  subtype3   0 113
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   21
  subtype2    2   84
  subtype3    0  113
     clus
vv    subtype1 subtype2 subtype3
  NO         0        2        0
  YES       21       84      113
          vv
clus       R0 R1 R2 RX
  subtype1 12  0  0  4
  subtype2 58  0  0  7
  subtype3 58  1  2  9
D12V10, multiclass
D12V11, continuous
> q(save="no")
