
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/6185515/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/6185324/GBM-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/6185324/GBM-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/6185515/transformed.cor.cli.txt"

nPatients in clinical file=592, in cluster file=560, common to both=560
[1]  80 560
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               82               478 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               82               478 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               88               472 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               88               472 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               524 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               524 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               35               525 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               35               525 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               57               503 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               57               503 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               63               497 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               63               497 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               35               525 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               35               525 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               33               527 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               33               527 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               48               512 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               48               512 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               40               520 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               40               520 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               23               537 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               23               537 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               22               538 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               22               538 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              455               105 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              455               105 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              460               100 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              460               100 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               51               509 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               51               509 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               58               502 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               58               502 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               47               513 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               47               513 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               72               488 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               72               488 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                548 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                548 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                557 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                557 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                18                542 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                18                542 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                545 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                545 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                58                502 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                58                502 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                48                512 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                48                512 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                551 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                551 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                22                538 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                22                538 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                536 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                536 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                37                523 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                37                523 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                36                524 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                36                524 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                45                515 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                45                515 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                56                504 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                56                504 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                58                502 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                58                502 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                57                503 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                57                503 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               220                340 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               220                340 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               193                367 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               193                367 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               217                343 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               217                343 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               215                345 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               215                345 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                62                498 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                62                498 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                34                526 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                34                526 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               16               544 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               16               544 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               544 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               544 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               15               545 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               15               545 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               30               530 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               30               530 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               530 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               530 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               39               521 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               39               521 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               33               527 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               33               527 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               53               507 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               53               507 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               54               506 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               54               506 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               42               518 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               42               518 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               43               517 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               43               517 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               84               476 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               84               476 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              121               439 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              121               439 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               552 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               552 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               554 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               554 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               58               502 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               58               502 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               42               518 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               42               518 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              194               366 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              194               366 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               86               474 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               86               474 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               467                 93 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               467                 93 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               478                 82 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               478                 82 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                464 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                464 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                90                470 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                90                470 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                59                501 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                59                501 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                57                503 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                57                503 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               182                378 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               182                378 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               141                419 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               141                419 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                99                461 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                99                461 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                62                498 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                62                498 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                81                479 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                81                479 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                63                497 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                63                497 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                42                518 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                42                518 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                68                492 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                68                492 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                61                499 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                61                499 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                26                534 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                26                534 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                34                526 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                34                526 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                18                542 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                18                542 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                16                544 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                16                544 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                40                520 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                40                520 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               173                387 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               173                387 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              102               458 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              102               458 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"

Input Data has 10 rows and 560 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 560 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       23     17     18     16
  1P GAIN WILD-TYPE    124     79    134     97
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              23               124
  CLUS_2              17                79
  CLUS_3              18               134
  CLUS_4              16                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       12     26     36
  1P GAIN WILD-TYPE    105    145    184
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              12               105
  CLUS_2              26               145
  CLUS_3              36               184
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       17     30     13     19
  1P GAIN WILD-TYPE    139    153     74    101
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              17               139
  CLUS_2              30               153
  CLUS_3              13                74
  CLUS_4              19               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       27     30     22
  1P GAIN WILD-TYPE    150    154    163
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              27               150
  CLUS_2              30               154
  CLUS_3              22               163
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       51     13     18
  1P GAIN WILD-TYPE     99    207    172
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              51                99
  CLUS_2              13               207
  CLUS_3              18               172
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        3      4      4
  1P GAIN WILD-TYPE     32     37     29
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                32
  CLUS_2               4                37
  CLUS_3               4                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        6      7      9      8
  1P GAIN WILD-TYPE     48     51     35     37
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               6                48
  CLUS_2               7                51
  CLUS_3               9                35
  CLUS_4               8                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       12      4     14
  1P GAIN WILD-TYPE     52     29     90
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              12                52
  CLUS_2               4                29
  CLUS_3              14                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        5     15      6
  1P GAIN WILD-TYPE     39     52     30
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                39
  CLUS_2              15                52
  CLUS_3               6                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       14      5      7
  1P GAIN WILD-TYPE     52     16     53
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14                52
  CLUS_2               5                16
  CLUS_3               7                53

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       24     23     18     15
  1Q GAIN WILD-TYPE    123     73    134     98
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              24               123
  CLUS_2              23                73
  CLUS_3              18               134
  CLUS_4              15                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       13     27     40
  1Q GAIN WILD-TYPE    104    144    180
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              13               104
  CLUS_2              27               144
  CLUS_3              40               180
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       16     33     13     23
  1Q GAIN WILD-TYPE    140    150     74     97
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              16               140
  CLUS_2              33               150
  CLUS_3              13                74
  CLUS_4              23                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       27     34     24
  1Q GAIN WILD-TYPE    150    150    161
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              27               150
  CLUS_2              34               150
  CLUS_3              24               161
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       57     11     20
  1Q GAIN WILD-TYPE     93    209    170
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              57                93
  CLUS_2              11               209
  CLUS_3              20               170
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      4      5
  1Q GAIN WILD-TYPE     31     37     28
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                31
  CLUS_2               4                37
  CLUS_3               5                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        7      8     10      7
  1Q GAIN WILD-TYPE     47     50     34     38
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                47
  CLUS_2               8                50
  CLUS_3              10                34
  CLUS_4               7                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       13      3     16
  1Q GAIN WILD-TYPE     51     30     88
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              13                51
  CLUS_2               3                30
  CLUS_3              16                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        7     14      6
  1Q GAIN WILD-TYPE     37     53     30
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                37
  CLUS_2              14                53
  CLUS_3               6                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       14      5      8
  1Q GAIN WILD-TYPE     52     16     52
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              14                52
  CLUS_2               5                16
  CLUS_3               8                52

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        9      9      7      9
  2P GAIN WILD-TYPE    138     87    145    104
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9               138
  CLUS_2               9                87
  CLUS_3               7               145
  CLUS_4               9               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        7     11     16
  2P GAIN WILD-TYPE    110    160    204
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7               110
  CLUS_2              11               160
  CLUS_3              16               204
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        8     12      4     12
  2P GAIN WILD-TYPE    148    171     83    108
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8               148
  CLUS_2              12               171
  CLUS_3               4                83
  CLUS_4              12               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       13     10     13
  2P GAIN WILD-TYPE    164    174    172
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              13               164
  CLUS_2              10               174
  CLUS_3              13               172
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       22      7      7
  2P GAIN WILD-TYPE    128    213    183
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              22               128
  CLUS_2               7               213
  CLUS_3               7               183
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        1      0      2
  2P GAIN WILD-TYPE     34     41     31
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                41
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        2      6      4      3
  2P GAIN WILD-TYPE     52     52     40     42
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               6                52
  CLUS_3               4                40
  CLUS_4               3                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        6      0      9
  2P GAIN WILD-TYPE     58     33     95
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                58
  CLUS_2               0                33
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        3      5      3
  2P GAIN WILD-TYPE     41     62     33
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                41
  CLUS_2               5                62
  CLUS_3               3                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        6      3      2
  2P GAIN WILD-TYPE     60     18     58
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                60
  CLUS_2               3                18
  CLUS_3               2                58

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        9      8      7      8
  2Q GAIN WILD-TYPE    138     88    145    105
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9               138
  CLUS_2               8                88
  CLUS_3               7               145
  CLUS_4               8               105
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        7      9     16
  2Q GAIN WILD-TYPE    110    162    204
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7               110
  CLUS_2               9               162
  CLUS_3              16               204
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        8     11      3     13
  2Q GAIN WILD-TYPE    148    172     84    107
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8               148
  CLUS_2              11               172
  CLUS_3               3                84
  CLUS_4              13               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       11     10     14
  2Q GAIN WILD-TYPE    166    174    171
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11               166
  CLUS_2              10               174
  CLUS_3              14               171
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       21      7      7
  2Q GAIN WILD-TYPE    129    213    183
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              21               129
  CLUS_2               7               213
  CLUS_3               7               183
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        1      0      2
  2Q GAIN WILD-TYPE     34     41     31
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                41
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        3      5      4      3
  2Q GAIN WILD-TYPE     51     53     40     42
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               5                53
  CLUS_3               4                40
  CLUS_4               3                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        6      0      9
  2Q GAIN WILD-TYPE     58     33     95
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                58
  CLUS_2               0                33
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        2      5      3
  2Q GAIN WILD-TYPE     42     62     33
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                42
  CLUS_2               5                62
  CLUS_3               3                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        6      3      1
  2Q GAIN WILD-TYPE     60     18     59
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                60
  CLUS_2               3                18
  CLUS_3               1                59

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       16     18      5     15
  3P GAIN WILD-TYPE    131     78    147     98
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16               131
  CLUS_2              18                78
  CLUS_3               5               147
  CLUS_4              15                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        6     28     20
  3P GAIN WILD-TYPE    111    143    200
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               6               111
  CLUS_2              28               143
  CLUS_3              20               200
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       16     19     11      9
  3P GAIN WILD-TYPE    140    164     76    111
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16               140
  CLUS_2              19               164
  CLUS_3              11                76
  CLUS_4               9               111
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       18     26     11
  3P GAIN WILD-TYPE    159    158    174
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              18               159
  CLUS_2              26               158
  CLUS_3              11               174
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       33      7     17
  3P GAIN WILD-TYPE    117    213    173
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              33               117
  CLUS_2               7               213
  CLUS_3              17               173
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2      2      6
  3P GAIN WILD-TYPE     33     39     27
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                39
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        3      3      2      5
  3P GAIN WILD-TYPE     51     55     42     40
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               3                55
  CLUS_3               2                42
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      1      9
  3P GAIN WILD-TYPE     61     32     95
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                61
  CLUS_2               1                32
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        7      8      4
  3P GAIN WILD-TYPE     37     59     32
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               7                37
  CLUS_2               8                59
  CLUS_3               4                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        8      1     10
  3P GAIN WILD-TYPE     58     20     50
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                58
  CLUS_2               1                20
  CLUS_3              10                50

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       17     21      7     15
  3Q GAIN WILD-TYPE    130     75    145     98
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              17               130
  CLUS_2              21                75
  CLUS_3               7               145
  CLUS_4              15                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        7     29     24
  3Q GAIN WILD-TYPE    110    142    196
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7               110
  CLUS_2              29               142
  CLUS_3              24               196
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       18     22     10     11
  3Q GAIN WILD-TYPE    138    161     77    109
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              18               138
  CLUS_2              22               161
  CLUS_3              10                77
  CLUS_4              11               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       21     27     13
  3Q GAIN WILD-TYPE    156    157    172
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              21               156
  CLUS_2              27               157
  CLUS_3              13               172
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       34     10     19
  3Q GAIN WILD-TYPE    116    210    171
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              34               116
  CLUS_2              10               210
  CLUS_3              19               171
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        2      2      7
  3Q GAIN WILD-TYPE     33     39     26
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                39
  CLUS_3               7                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        4      3      4      5
  3Q GAIN WILD-TYPE     50     55     40     40
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                50
  CLUS_2               3                55
  CLUS_3               4                40
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        5      1     10
  3Q GAIN WILD-TYPE     59     32     94
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                59
  CLUS_2               1                32
  CLUS_3              10                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        9     10      4
  3Q GAIN WILD-TYPE     35     57     32
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9                35
  CLUS_2              10                57
  CLUS_3               4                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       10      1     12
  3Q GAIN WILD-TYPE     56     20     48
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10                56
  CLUS_2               1                20
  CLUS_3              12                48

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        8     10     10      4
  4P GAIN WILD-TYPE    139     86    142    109
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8               139
  CLUS_2              10                86
  CLUS_3              10               142
  CLUS_4               4               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        9     12     11
  4P GAIN WILD-TYPE    108    159    209
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               9               108
  CLUS_2              12               159
  CLUS_3              11               209
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       13     13      4      5
  4P GAIN WILD-TYPE    143    170     83    115
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13               143
  CLUS_2              13               170
  CLUS_3               4                83
  CLUS_4               5               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       16     11      8
  4P GAIN WILD-TYPE    161    173    177
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              16               161
  CLUS_2              11               173
  CLUS_3               8               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       17      6     12
  4P GAIN WILD-TYPE    133    214    178
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              17               133
  CLUS_2               6               214
  CLUS_3              12               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     34     40     32
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                40
  CLUS_3               1                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        5      4      2      2
  4P GAIN WILD-TYPE     49     54     42     43
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2               4                54
  CLUS_3               2                42
  CLUS_4               2                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      2      9
  4P GAIN WILD-TYPE     62     31     95
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                62
  CLUS_2               2                31
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        4      3      2
  4P GAIN WILD-TYPE     40     64     34
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                40
  CLUS_2               3                64
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        3      0      6
  4P GAIN WILD-TYPE     63     21     54
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                63
  CLUS_2               0                21
  CLUS_3               6                54

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        7      9     10      5
  4Q GAIN WILD-TYPE    140     87    142    108
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               140
  CLUS_2               9                87
  CLUS_3              10               142
  CLUS_4               5               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        8     14      9
  4Q GAIN WILD-TYPE    109    157    211
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               8               109
  CLUS_2              14               157
  CLUS_3               9               211
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       12     13      3      5
  4Q GAIN WILD-TYPE    144    170     84    115
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12               144
  CLUS_2              13               170
  CLUS_3               3                84
  CLUS_4               5               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13     12      8
  4Q GAIN WILD-TYPE    164    172    177
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13               164
  CLUS_2              12               172
  CLUS_3               8               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       15      6     12
  4Q GAIN WILD-TYPE    135    214    178
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              15               135
  CLUS_2               6               214
  CLUS_3              12               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      2
  4Q GAIN WILD-TYPE     34     40     31
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                40
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        4      3      2      2
  4Q GAIN WILD-TYPE     50     55     42     43
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                50
  CLUS_2               3                55
  CLUS_3               2                42
  CLUS_4               2                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      2      7
  4Q GAIN WILD-TYPE     62     31     97
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                62
  CLUS_2               2                31
  CLUS_3               7                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        4      2      2
  4Q GAIN WILD-TYPE     40     65     34
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                40
  CLUS_2               2                65
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      0      6
  4Q GAIN WILD-TYPE     64     21     54
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                64
  CLUS_2               0                21
  CLUS_3               6                54

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       18      9      7     10
  5P GAIN WILD-TYPE    129     87    145    103
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              18               129
  CLUS_2               9                87
  CLUS_3               7               145
  CLUS_4              10               103
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        7     13     24
  5P GAIN WILD-TYPE    110    158    196
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7               110
  CLUS_2              13               158
  CLUS_3              24               196
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       17     11      5     14
  5P GAIN WILD-TYPE    139    172     82    106
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              17               139
  CLUS_2              11               172
  CLUS_3               5                82
  CLUS_4              14               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       18     12     17
  5P GAIN WILD-TYPE    159    172    168
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              18               159
  CLUS_2              12               172
  CLUS_3              17               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       28      7     13
  5P GAIN WILD-TYPE    122    213    177
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              28               122
  CLUS_2               7               213
  CLUS_3              13               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      1      2
  5P GAIN WILD-TYPE     34     40     31
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                40
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        2      4      3      0
  5P GAIN WILD-TYPE     52     54     41     45
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               4                54
  CLUS_3               3                41
  CLUS_4               0                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      1      3
  5P GAIN WILD-TYPE     59     32    101
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                59
  CLUS_2               1                32
  CLUS_3               3               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        3      7      0
  5P GAIN WILD-TYPE     41     60     36
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                41
  CLUS_2               7                60
  CLUS_3               0                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        7      1      2
  5P GAIN WILD-TYPE     59     20     58
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                59
  CLUS_2               1                20
  CLUS_3               2                58

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       17      6      7      7
  5Q GAIN WILD-TYPE    130     90    145    106
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              17               130
  CLUS_2               6                90
  CLUS_3               7               145
  CLUS_4               7               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        7     10     20
  5Q GAIN WILD-TYPE    110    161    200
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7               110
  CLUS_2              10               161
  CLUS_3              20               200
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       15      8      4     12
  5Q GAIN WILD-TYPE    141    175     83    108
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              15               141
  CLUS_2               8               175
  CLUS_3               4                83
  CLUS_4              12               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       16      7     16
  5Q GAIN WILD-TYPE    161    177    169
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              16               161
  CLUS_2               7               177
  CLUS_3              16               169
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       25      6      9
  5Q GAIN WILD-TYPE    125    214    181
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              25               125
  CLUS_2               6               214
  CLUS_3               9               181
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      1      3
  5Q GAIN WILD-TYPE     34     40     30
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                40
  CLUS_3               3                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        2      2      3      0
  5Q GAIN WILD-TYPE     52     56     41     45
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               2                56
  CLUS_3               3                41
  CLUS_4               0                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        5      0      2
  5Q GAIN WILD-TYPE     59     33    102
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                59
  CLUS_2               0                33
  CLUS_3               2               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        4      6      0
  5Q GAIN WILD-TYPE     40     61     36
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                40
  CLUS_2               6                61
  CLUS_3               0                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        6      1      3
  5Q GAIN WILD-TYPE     60     20     57
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6                60
  CLUS_2               1                20
  CLUS_3               3                57

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        4     10      3      3
  6P GAIN WILD-TYPE    143     86    149    110
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4               143
  CLUS_2              10                86
  CLUS_3               3               149
  CLUS_4               3               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        2     11      7
  6P GAIN WILD-TYPE    115    160    213
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2               115
  CLUS_2              11               160
  CLUS_3               7               213
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        6      7      5      5
  6P GAIN WILD-TYPE    150    176     82    115
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6               150
  CLUS_2               7               176
  CLUS_3               5                82
  CLUS_4               5               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        6     10      7
  6P GAIN WILD-TYPE    171    174    178
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6               171
  CLUS_2              10               174
  CLUS_3               7               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        9      5      9
  6P GAIN WILD-TYPE    141    215    181
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               9               141
  CLUS_2               5               215
  CLUS_3               9               181
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        1      1      2
  6P GAIN WILD-TYPE     34     40     31
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                40
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        2      1      2      1
  6P GAIN WILD-TYPE     52     57     42     44
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                57
  CLUS_3               2                42
  CLUS_4               1                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        2      2      2
  6P GAIN WILD-TYPE     62     31    102
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                62
  CLUS_2               2                31
  CLUS_3               2               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        1      2      1
  6P GAIN WILD-TYPE     43     65     35
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                43
  CLUS_2               2                65
  CLUS_3               1                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        3      0      1
  6P GAIN WILD-TYPE     63     21     59
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                63
  CLUS_2               0                21
  CLUS_3               1                59

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        4     11      2      3
  6Q GAIN WILD-TYPE    143     85    150    110
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               4               143
  CLUS_2              11                85
  CLUS_3               2               150
  CLUS_4               3               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        2     11      7
  6Q GAIN WILD-TYPE    115    160    213
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2               115
  CLUS_2              11               160
  CLUS_3               7               213
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        5      7      5      5
  6Q GAIN WILD-TYPE    151    176     82    115
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5               151
  CLUS_2               7               176
  CLUS_3               5                82
  CLUS_4               5               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        6     10      6
  6Q GAIN WILD-TYPE    171    174    179
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6               171
  CLUS_2              10               174
  CLUS_3               6               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        9      3     10
  6Q GAIN WILD-TYPE    141    217    180
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9               141
  CLUS_2               3               217
  CLUS_3              10               180
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      0      2
  6Q GAIN WILD-TYPE     34     41     31
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                41
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        2      1      1      1
  6Q GAIN WILD-TYPE     52     57     43     44
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                57
  CLUS_3               1                43
  CLUS_4               1                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      2      2
  6Q GAIN WILD-TYPE     63     31    102
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                63
  CLUS_2               2                31
  CLUS_3               2               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        2      1      1
  6Q GAIN WILD-TYPE     42     66     35
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                66
  CLUS_3               1                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      0      1
  6Q GAIN WILD-TYPE     63     21     59
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                63
  CLUS_2               0                21
  CLUS_3               1                59

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED      135     65    129     82
  7P GAIN WILD-TYPE     12     31     23     31
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1             135                12
  CLUS_2              65                31
  CLUS_3             129                23
  CLUS_4              82                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       99    116    196
  7P GAIN WILD-TYPE     18     55     24
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              99                18
  CLUS_2             116                55
  CLUS_3             196                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED      139    137     64    105
  7P GAIN WILD-TYPE     17     46     23     15
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1             139                17
  CLUS_2             137                46
  CLUS_3              64                23
  CLUS_4             105                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED      161    124    160
  7P GAIN WILD-TYPE     16     60     25
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1             161                16
  CLUS_2             124                60
  CLUS_3             160                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED      134    196    125
  7P GAIN WILD-TYPE     16     24     65
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1             134                16
  CLUS_2             196                24
  CLUS_3             125                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       32     38     22
  7P GAIN WILD-TYPE      3      3     11
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              32                 3
  CLUS_2              38                 3
  CLUS_3              22                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       46     39     37     43
  7P GAIN WILD-TYPE      8     19      7      2
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              46                 8
  CLUS_2              39                19
  CLUS_3              37                 7
  CLUS_4              43                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       55     29     81
  7P GAIN WILD-TYPE      9      4     23
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              55                 9
  CLUS_2              29                 4
  CLUS_3              81                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       31     61     28
  7P GAIN WILD-TYPE     13      6      8
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              31                13
  CLUS_2              61                 6
  CLUS_3              28                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       61     18     41
  7P GAIN WILD-TYPE      5      3     19
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              61                 5
  CLUS_2              18                 3
  CLUS_3              41                19

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED      135     62    130     87
  7Q GAIN WILD-TYPE     12     34     22     26
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1             135                12
  CLUS_2              62                34
  CLUS_3             130                22
  CLUS_4              87                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       99    123    192
  7Q GAIN WILD-TYPE     18     48     28
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              99                18
  CLUS_2             123                48
  CLUS_3             192                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED      140    137     68    103
  7Q GAIN WILD-TYPE     16     46     19     17
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1             140                16
  CLUS_2             137                46
  CLUS_3              68                19
  CLUS_4             103                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED      155    134    159
  7Q GAIN WILD-TYPE     22     50     26
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1             155                22
  CLUS_2             134                50
  CLUS_3             159                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED      130    199    131
  7Q GAIN WILD-TYPE     20     21     59
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1             130                20
  CLUS_2             199                21
  CLUS_3             131                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       34     38     23
  7Q GAIN WILD-TYPE      1      3     10
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              34                 1
  CLUS_2              38                 3
  CLUS_3              23                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       45     43     39     41
  7Q GAIN WILD-TYPE      9     15      5      4
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              45                 9
  CLUS_2              43                15
  CLUS_3              39                 5
  CLUS_4              41                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       56     30     82
  7Q GAIN WILD-TYPE      8      3     22
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              56                 8
  CLUS_2              30                 3
  CLUS_3              82                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       32     60     32
  7Q GAIN WILD-TYPE     12      7      4
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              32                12
  CLUS_2              60                 7
  CLUS_3              32                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       62     17     45
  7Q GAIN WILD-TYPE      4      4     15
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              62                 4
  CLUS_2              17                 4
  CLUS_3              45                15

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        7     18      6     17
  8P GAIN WILD-TYPE    140     78    146     96
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               7               140
  CLUS_2              18                78
  CLUS_3               6               146
  CLUS_4              17                96
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6     27     15
  8P GAIN WILD-TYPE    111    144    205
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6               111
  CLUS_2              27               144
  CLUS_3              15               205
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        8     22     11      8
  8P GAIN WILD-TYPE    148    161     76    112
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               8               148
  CLUS_2              22               161
  CLUS_3              11                76
  CLUS_4               8               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       10     27     12
  8P GAIN WILD-TYPE    167    157    173
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              10               167
  CLUS_2              27               157
  CLUS_3              12               173
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       32      4     15
  8P GAIN WILD-TYPE    118    216    175
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              32               118
  CLUS_2               4               216
  CLUS_3              15               175
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        1      1      5
  8P GAIN WILD-TYPE     34     40     28
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                40
  CLUS_3               5                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        3      8      5      3
  8P GAIN WILD-TYPE     51     50     39     42
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               8                50
  CLUS_3               5                39
  CLUS_4               3                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6      0     13
  8P GAIN WILD-TYPE     58     33     91
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                58
  CLUS_2               0                33
  CLUS_3              13                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        9      5      4
  8P GAIN WILD-TYPE     35     62     32
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                35
  CLUS_2               5                62
  CLUS_3               4                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        5      3     10
  8P GAIN WILD-TYPE     61     18     50
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                61
  CLUS_2               3                18
  CLUS_3              10                50

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        7     20      7     20
  8Q GAIN WILD-TYPE    140     76    145     93
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7               140
  CLUS_2              20                76
  CLUS_3               7               145
  CLUS_4              20                93
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        7     32     15
  8Q GAIN WILD-TYPE    110    139    205
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7               110
  CLUS_2              32               139
  CLUS_3              15               205
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       10     27     10      8
  8Q GAIN WILD-TYPE    146    156     77    112
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              10               146
  CLUS_2              27               156
  CLUS_3              10                77
  CLUS_4               8               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       13     29     13
  8Q GAIN WILD-TYPE    164    155    172
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              13               164
  CLUS_2              29               155
  CLUS_3              13               172
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       31      6     21
  8Q GAIN WILD-TYPE    119    214    169
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              31               119
  CLUS_2               6               214
  CLUS_3              21               169
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        1      2      5
  8Q GAIN WILD-TYPE     34     39     28
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                39
  CLUS_3               5                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        3      8      5      3
  8Q GAIN WILD-TYPE     51     50     39     42
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               8                50
  CLUS_3               5                39
  CLUS_4               3                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        6      0     13
  8Q GAIN WILD-TYPE     58     33     91
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                58
  CLUS_2               0                33
  CLUS_3              13                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       10      6      4
  8Q GAIN WILD-TYPE     34     61     32
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              10                34
  CLUS_2               6                61
  CLUS_3               4                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        5      4     11
  8Q GAIN WILD-TYPE     61     17     49
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                61
  CLUS_2               4                17
  CLUS_3              11                49

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       14     17      7      6
  9P GAIN WILD-TYPE    133     79    145    107
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              14               133
  CLUS_2              17                79
  CLUS_3               7               145
  CLUS_4               6               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        5     16     23
  9P GAIN WILD-TYPE    112    155    197
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               5               112
  CLUS_2              16               155
  CLUS_3              23               197
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       10     18      8     10
  9P GAIN WILD-TYPE    146    165     79    110
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10               146
  CLUS_2              18               165
  CLUS_3               8                79
  CLUS_4              10               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       14     18     14
  9P GAIN WILD-TYPE    163    166    171
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              14               163
  CLUS_2              18               166
  CLUS_3              14               171
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       25      7     15
  9P GAIN WILD-TYPE    125    213    175
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              25               125
  CLUS_2               7               213
  CLUS_3              15               175
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      4      5
  9P GAIN WILD-TYPE     34     37     28
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               4                37
  CLUS_3               5                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      5      2      4
  9P GAIN WILD-TYPE     51     53     42     41
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               5                53
  CLUS_3               2                42
  CLUS_4               4                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      2      9
  9P GAIN WILD-TYPE     61     31     95
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                61
  CLUS_2               2                31
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        6      9      2
  9P GAIN WILD-TYPE     38     58     34
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               6                38
  CLUS_2               9                58
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       11      2      4
  9P GAIN WILD-TYPE     55     19     56
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11                55
  CLUS_2               2                19
  CLUS_3               4                56

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       20     20     13     14
  9Q GAIN WILD-TYPE    127     76    139     99
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              20               127
  CLUS_2              20                76
  CLUS_3              13               139
  CLUS_4              14                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        9     27     31
  9Q GAIN WILD-TYPE    108    144    189
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               9               108
  CLUS_2              27               144
  CLUS_3              31               189
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       15     26     13     16
  9Q GAIN WILD-TYPE    141    157     74    104
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15               141
  CLUS_2              26               157
  CLUS_3              13                74
  CLUS_4              16               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       20     31     19
  9Q GAIN WILD-TYPE    157    153    166
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              20               157
  CLUS_2              31               153
  CLUS_3              19               166
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       34     14     24
  9Q GAIN WILD-TYPE    116    206    166
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              34               116
  CLUS_2              14               206
  CLUS_3              24               166
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        1      5      7
  9Q GAIN WILD-TYPE     34     36     26
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                34
  CLUS_2               5                36
  CLUS_3               7                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        3      9      3      5
  9Q GAIN WILD-TYPE     51     49     41     40
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               9                49
  CLUS_3               3                41
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        4      3     13
  9Q GAIN WILD-TYPE     60     30     91
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                60
  CLUS_2               3                30
  CLUS_3              13                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        6     10      3
  9Q GAIN WILD-TYPE     38     57     33
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6                38
  CLUS_2              10                57
  CLUS_3               3                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       11      4      4
  9Q GAIN WILD-TYPE     55     17     56
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              11                55
  CLUS_2               4                17
  CLUS_3               4                56

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      6      0      5
  10P GAIN WILD-TYPE    146     90    152    108
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                146
  CLUS_2                6                 90
  CLUS_3                0                152
  CLUS_4                5                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      9      3
  10P GAIN WILD-TYPE    117    162    217
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                117
  CLUS_2                9                162
  CLUS_3                3                217
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      7      3      1
  10P GAIN WILD-TYPE    155    176     84    119
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                155
  CLUS_2                7                176
  CLUS_3                3                 84
  CLUS_4                1                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      9      2
  10P GAIN WILD-TYPE    176    175    183
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                176
  CLUS_2                9                175
  CLUS_3                2                183
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3      0      9
  10P GAIN WILD-TYPE    147    220    181
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                147
  CLUS_2                0                220
  CLUS_3                9                181
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      0      0
  10P GAIN WILD-TYPE     35     41     33
D19V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      3      0      0
  10P GAIN WILD-TYPE     53     55     44     45
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                3                 55
  CLUS_3                0                 44
  CLUS_4                0                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      1      3
  10P GAIN WILD-TYPE     64     32    101
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 64
  CLUS_2                1                 32
  CLUS_3                3                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      1      0
  10P GAIN WILD-TYPE     43     66     36
D19V9, multiclass
[1] "Remove cluster labels:" "10P GAIN MUTATED"      
clus
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 2                145 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0125 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0138         TCGA-06-0141         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0168         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0184         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0190         TCGA-06-0210         TCGA-06-0211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2570         TCGA-06-5408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-08-0386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0616         TCGA-12-0618         TCGA-12-0619 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0821         TCGA-12-3650         TCGA-12-3652 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5295         TCGA-12-5299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0781         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0817         TCGA-14-1034 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2554         TCGA-15-0742         TCGA-15-1444 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0846         TCGA-16-1045         TCGA-19-1390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1787         TCGA-19-2619         TCGA-19-2620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5960         TCGA-26-1442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1837 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2528 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1753         TCGA-28-2509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2510         TCGA-28-2513         TCGA-28-2514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5213         TCGA-28-5215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1980         TCGA-32-1982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2615         TCGA-32-2616         TCGA-32-2634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4213         TCGA-32-5222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-3915 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-4097         TCGA-41-5651         TCGA-76-4925 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4931 
"10P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      0      0
  10P GAIN WILD-TYPE     64     21     60
D19V10, multiclass
[1] "Remove cluster labels:" "10P GAIN MUTATED"      
clus
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 2                145 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0125 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0138         TCGA-06-0141         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0168         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0184         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0190         TCGA-06-0210         TCGA-06-0211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2570         TCGA-06-5408 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-08-0386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0616         TCGA-12-0618         TCGA-12-0619 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0821         TCGA-12-3650         TCGA-12-3652 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3653         TCGA-12-5295         TCGA-12-5299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0781         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0817         TCGA-14-1034 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1829 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2554         TCGA-15-0742         TCGA-15-1444 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0846         TCGA-16-1045         TCGA-19-1390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1787         TCGA-19-2619         TCGA-19-2620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5960         TCGA-26-1442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1837 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2528 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1753         TCGA-28-2509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2510         TCGA-28-2513         TCGA-28-2514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5213         TCGA-28-5215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1980         TCGA-32-1982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2615         TCGA-32-2616         TCGA-32-2634 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4213         TCGA-32-5222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-3915 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-4097         TCGA-41-5651         TCGA-76-4925 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4931 
"10P GAIN WILD-TYPE" 

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        1      1      0      1
  10Q GAIN WILD-TYPE    146     95    152    112
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                146
  CLUS_2                1                 95
  CLUS_3                0                152
  CLUS_4                1                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      1      2
  10Q GAIN WILD-TYPE    117    170    218
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                117
  CLUS_2                1                170
  CLUS_3                2                218
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        1      0      2      0
  10Q GAIN WILD-TYPE    155    183     85    120
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                155
  CLUS_2                0                183
  CLUS_3                2                 85
  CLUS_4                0                120
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      2      1
  10Q GAIN WILD-TYPE    177    182    184
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                177
  CLUS_2                2                182
  CLUS_3                1                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      0      1
  10Q GAIN WILD-TYPE    148    220    189
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                148
  CLUS_2                0                220
  CLUS_3                1                189
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      0      0
  10Q GAIN WILD-TYPE     35     41     33
D20V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        0      1      0      0
  10Q GAIN WILD-TYPE     54     57     44     45
D20V7, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                200 
        TCGA-02-0003         TCGA-02-0014         TCGA-02-0068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0116         TCGA-02-2470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2485         TCGA-06-0125         TCGA-06-0126 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0128         TCGA-06-0129         TCGA-06-0130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0171 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0189         TCGA-06-0238         TCGA-06-0644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0650         TCGA-06-0875         TCGA-06-0876 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1802         TCGA-06-1804         TCGA-06-1805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1806         TCGA-06-2557         TCGA-06-2558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2562         TCGA-06-2563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2570         TCGA-06-5408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0245 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0344         TCGA-08-0345         TCGA-08-0346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0347         TCGA-08-0348         TCGA-08-0349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0350         TCGA-08-0351         TCGA-08-0352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0353         TCGA-08-0354         TCGA-08-0355 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0356         TCGA-08-0357         TCGA-08-0358 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0359         TCGA-08-0375         TCGA-08-0380 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0386         TCGA-08-0389         TCGA-08-0390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0392         TCGA-12-0691         TCGA-12-0692 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1598         TCGA-12-1599         TCGA-12-3646 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0813         TCGA-14-0862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0871         TCGA-14-1823         TCGA-15-1446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1460         TCGA-19-0957         TCGA-19-0962 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1389         TCGA-19-1390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2631         TCGA-19-5947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1440         TCGA-26-1442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1836         TCGA-27-2518 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1750         TCGA-28-1752         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1757         TCGA-28-2501         TCGA-28-5208 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5214         TCGA-32-1970         TCGA-32-1976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1982         TCGA-32-1986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-4210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-5222         TCGA-41-2573 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4926         TCGA-76-4928 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931         TCGA-76-6192 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6193         TCGA-76-6282         TCGA-76-6283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6656         TCGA-76-6657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6662         TCGA-76-6663 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      0      1
  10Q GAIN WILD-TYPE     64     33    103
D20V8, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                200 
        TCGA-02-0003         TCGA-02-0014         TCGA-02-0068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0116         TCGA-02-2470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2485         TCGA-06-0125         TCGA-06-0126 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0128         TCGA-06-0129         TCGA-06-0130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0171 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0189         TCGA-06-0238         TCGA-06-0644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0650         TCGA-06-0875         TCGA-06-0876 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1802         TCGA-06-1804         TCGA-06-1805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1806         TCGA-06-2557         TCGA-06-2558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2562         TCGA-06-2563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2570         TCGA-06-5408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0245 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0344         TCGA-08-0345         TCGA-08-0346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0347         TCGA-08-0348         TCGA-08-0349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0350         TCGA-08-0351         TCGA-08-0352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0353         TCGA-08-0354         TCGA-08-0355 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0356         TCGA-08-0357         TCGA-08-0358 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0359         TCGA-08-0375         TCGA-08-0380 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0386         TCGA-08-0389         TCGA-08-0390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0392         TCGA-12-0691         TCGA-12-0692 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1598         TCGA-12-1599         TCGA-12-3646 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0813         TCGA-14-0862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0871         TCGA-14-1823         TCGA-15-1446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1460         TCGA-19-0957         TCGA-19-0962 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1389         TCGA-19-1390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2631         TCGA-19-5947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1440         TCGA-26-1442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1836         TCGA-27-2518 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1750         TCGA-28-1752         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1757         TCGA-28-2501         TCGA-28-5208 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5214         TCGA-32-1970         TCGA-32-1976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1982         TCGA-32-1986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-4210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-5222         TCGA-41-2573 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4926         TCGA-76-4928 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931         TCGA-76-6192 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6193         TCGA-76-6282         TCGA-76-6283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6656         TCGA-76-6657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6662         TCGA-76-6663 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      1      0
  10Q GAIN WILD-TYPE     44     66     36
D20V9, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                146 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0125 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0138         TCGA-06-0141         TCGA-06-0157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0168         TCGA-06-0174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0184         TCGA-06-0187 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0190         TCGA-06-0210         TCGA-06-0211 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0616         TCGA-12-0618 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0821         TCGA-12-3650 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-14-0781         TCGA-14-0787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0817 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1823         TCGA-14-1825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-15-0742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-16-0846         TCGA-16-1045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1390         TCGA-19-1787         TCGA-19-2619 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2624         TCGA-19-2625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2629         TCGA-19-4065         TCGA-19-5960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1834         TCGA-27-1835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-2519         TCGA-27-2521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1747         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2509         TCGA-28-2510         TCGA-28-2513 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5213 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-32-1970         TCGA-32-1980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-2615         TCGA-32-2616 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2634         TCGA-32-2638         TCGA-32-4213 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4928 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      0
  10Q GAIN WILD-TYPE     65     21     60
D20V10, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                146 
        TCGA-02-0047         TCGA-02-0055         TCGA-02-2483 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2485         TCGA-02-2486         TCGA-06-0125 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0129         TCGA-06-0130         TCGA-06-0132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0138         TCGA-06-0141         TCGA-06-0157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0168         TCGA-06-0174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0184         TCGA-06-0187 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0190         TCGA-06-0210         TCGA-06-0211 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0219         TCGA-06-0238         TCGA-06-0644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0649 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0878         TCGA-06-0882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-2557         TCGA-06-2558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0386         TCGA-12-0616         TCGA-12-0618 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0821         TCGA-12-3650 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-14-0781         TCGA-14-0787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0817 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1823         TCGA-14-1825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-15-0742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-16-0846         TCGA-16-1045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1390         TCGA-19-1787         TCGA-19-2619 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2624         TCGA-19-2625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2629         TCGA-19-4065         TCGA-19-5960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-27-1830         TCGA-27-1831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1832         TCGA-27-1834         TCGA-27-1835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-2519         TCGA-27-2521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1747         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2509         TCGA-28-2510         TCGA-28-2513 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5213 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-32-1970         TCGA-32-1980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-2615         TCGA-32-2616 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2634         TCGA-32-2638         TCGA-32-4213 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4928 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        5      4      4      4
  11P GAIN WILD-TYPE    142     92    148    109
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                142
  CLUS_2                4                 92
  CLUS_3                4                148
  CLUS_4                4                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        3      7      7
  11P GAIN WILD-TYPE    114    164    213
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                114
  CLUS_2                7                164
  CLUS_3                7                213
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        4      7      1      5
  11P GAIN WILD-TYPE    152    176     86    115
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                152
  CLUS_2                7                176
  CLUS_3                1                 86
  CLUS_4                5                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        5      6      6
  11P GAIN WILD-TYPE    172    178    179
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                172
  CLUS_2                6                178
  CLUS_3                6                179
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        7      3      8
  11P GAIN WILD-TYPE    143    217    182
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                7                143
  CLUS_2                3                217
  CLUS_3                8                182
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      1      0
  11P GAIN WILD-TYPE     34     40     33
D21V6, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                107 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-19-5947         TCGA-19-5950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2501         TCGA-28-2510         TCGA-28-5204 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-5222         TCGA-41-5651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6283         TCGA-76-6285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6661         TCGA-76-6662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-81-5911         TCGA-87-5896 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1      1      1      2
  11P GAIN WILD-TYPE     53     57     43     43
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                 57
  CLUS_3                1                 43
  CLUS_4                2                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      0      4
  11P GAIN WILD-TYPE     63     33    100
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 63
  CLUS_2                0                 33
  CLUS_3                4                100
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      4      2
  11P GAIN WILD-TYPE     43     63     34
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                4                 63
  CLUS_3                2                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        5      0      2
  11P GAIN WILD-TYPE     61     21     58
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 61
  CLUS_2                0                 21
  CLUS_3                2                 58

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      5      2      5
  11Q GAIN WILD-TYPE    145     91    150    108
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                145
  CLUS_2                5                 91
  CLUS_3                2                150
  CLUS_4                5                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        2      8      4
  11Q GAIN WILD-TYPE    115    163    216
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                115
  CLUS_2                8                163
  CLUS_3                4                216
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      7      1      3
  11Q GAIN WILD-TYPE    154    176     86    117
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                154
  CLUS_2                7                176
  CLUS_3                1                 86
  CLUS_4                3                117
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      6      4
  11Q GAIN WILD-TYPE    174    178    181
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                174
  CLUS_2                6                178
  CLUS_3                4                181
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        5      2      8
  11Q GAIN WILD-TYPE    145    218    182
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                145
  CLUS_2                2                218
  CLUS_3                8                182
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      0      0
  11Q GAIN WILD-TYPE     34     41     33
D22V6, multiclass
[1] "Remove cluster labels:" "11Q GAIN MUTATED"      
clus
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 1                108 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-19-5947         TCGA-19-5950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-5132         TCGA-26-5133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2501         TCGA-28-2510         TCGA-28-5204 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1979         TCGA-32-1980         TCGA-32-5222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6283 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6286         TCGA-76-6656 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6657         TCGA-76-6660         TCGA-76-6661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        1      1      1      2
  11Q GAIN WILD-TYPE     53     57     43     43
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                 57
  CLUS_3                1                 43
  CLUS_4                2                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      0      4
  11Q GAIN WILD-TYPE     63     33    100
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 63
  CLUS_2                0                 33
  CLUS_3                4                100
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      1      1
  11Q GAIN WILD-TYPE     43     66     35
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                1                 66
  CLUS_3                1                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        2      0      1
  11Q GAIN WILD-TYPE     64     21     59
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                 64
  CLUS_2                0                 21
  CLUS_3                1                 59

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       15     13     14     10
  12P GAIN WILD-TYPE    132     83    138    103
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               15                132
  CLUS_2               13                 83
  CLUS_3               14                138
  CLUS_4               10                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       12     15     25
  12P GAIN WILD-TYPE    105    156    195
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                105
  CLUS_2               15                156
  CLUS_3               25                195
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       13     24      8     13
  12P GAIN WILD-TYPE    143    159     79    107
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               13                143
  CLUS_2               24                159
  CLUS_3                8                 79
  CLUS_4               13                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       21     17     20
  12P GAIN WILD-TYPE    156    167    165
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               21                156
  CLUS_2               17                167
  CLUS_3               20                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       30     12     16
  12P GAIN WILD-TYPE    120    208    174
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               30                120
  CLUS_2               12                208
  CLUS_3               16                174
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        1      4      5
  12P GAIN WILD-TYPE     34     37     28
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                4                 37
  CLUS_3                5                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        1      5      4      5
  12P GAIN WILD-TYPE     53     53     40     40
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                5                 53
  CLUS_3                4                 40
  CLUS_4                5                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        5      1      9
  12P GAIN WILD-TYPE     59     32     95
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 59
  CLUS_2                1                 32
  CLUS_3                9                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        0     11      3
  12P GAIN WILD-TYPE     44     56     33
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                 44
  CLUS_2               11                 56
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        9      2      3
  12P GAIN WILD-TYPE     57     19     57
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 57
  CLUS_2                2                 19
  CLUS_3                3                 57

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       14     10     13      6
  12Q GAIN WILD-TYPE    133     86    139    107
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               14                133
  CLUS_2               10                 86
  CLUS_3               13                139
  CLUS_4                6                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       11     10     22
  12Q GAIN WILD-TYPE    106    161    198
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               11                106
  CLUS_2               10                161
  CLUS_3               22                198
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       10     20      7     11
  12Q GAIN WILD-TYPE    146    163     80    109
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               10                146
  CLUS_2               20                163
  CLUS_3                7                 80
  CLUS_4               11                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       19     12     17
  12Q GAIN WILD-TYPE    158    172    168
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               19                158
  CLUS_2               12                172
  CLUS_3               17                168
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       25     12     11
  12Q GAIN WILD-TYPE    125    208    179
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               25                125
  CLUS_2               12                208
  CLUS_3               11                179
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        1      4      4
  12Q GAIN WILD-TYPE     34     37     29
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                4                 37
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        1      5      4      4
  12Q GAIN WILD-TYPE     53     53     40     41
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                5                 53
  CLUS_3                4                 40
  CLUS_4                4                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        6      1      7
  12Q GAIN WILD-TYPE     58     32     97
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 58
  CLUS_2                1                 32
  CLUS_3                7                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        0      9      3
  12Q GAIN WILD-TYPE     44     58     33
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                 44
  CLUS_2                9                 58
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        7      2      3
  12Q GAIN WILD-TYPE     59     19     57
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 59
  CLUS_2                2                 19
  CLUS_3                3                 57

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      4      1      0
  13Q GAIN WILD-TYPE    143     92    151    113
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                143
  CLUS_2                4                 92
  CLUS_3                1                151
  CLUS_4                0                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        1      2      6
  13Q GAIN WILD-TYPE    116    169    214
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                116
  CLUS_2                2                169
  CLUS_3                6                214
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      6      0      2
  13Q GAIN WILD-TYPE    155    177     87    118
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                155
  CLUS_2                6                177
  CLUS_3                0                 87
  CLUS_4                2                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      4      3
  13Q GAIN WILD-TYPE    175    180    182
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                175
  CLUS_2                4                180
  CLUS_3                3                182
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        7      1      1
  13Q GAIN WILD-TYPE    143    219    189
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                143
  CLUS_2                1                219
  CLUS_3                1                189
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        0      1      1
  13Q GAIN WILD-TYPE     35     40     32
D25V6, multiclass
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 2                107 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-19-4065         TCGA-19-5947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2501         TCGA-28-2510         TCGA-28-5204 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-5222         TCGA-41-5651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6283         TCGA-76-6285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6661         TCGA-76-6662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-81-5911         TCGA-87-5896 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      1      1      0
  13Q GAIN WILD-TYPE     53     57     43     45
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                 57
  CLUS_3                1                 43
  CLUS_4                0                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        1      0      2
  13Q GAIN WILD-TYPE     63     33    102
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 63
  CLUS_2                0                 33
  CLUS_3                2                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        1      2      3
  13Q GAIN WILD-TYPE     43     65     33
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                2                 65
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      1      2
  13Q GAIN WILD-TYPE     63     20     58
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                1                 20
  CLUS_3                2                 58

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        6      6      6      2
  14Q GAIN WILD-TYPE    141     90    146    111
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                141
  CLUS_2                6                 90
  CLUS_3                6                146
  CLUS_4                2                111
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        3      6     11
  14Q GAIN WILD-TYPE    114    165    209
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                114
  CLUS_2                6                165
  CLUS_3               11                209
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       10      4      7      1
  14Q GAIN WILD-TYPE    146    179     80    119
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                146
  CLUS_2                4                179
  CLUS_3                7                 80
  CLUS_4                1                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        5     10      7
  14Q GAIN WILD-TYPE    172    174    178
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                172
  CLUS_2               10                174
  CLUS_3                7                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        7      7      8
  14Q GAIN WILD-TYPE    143    213    182
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                7                143
  CLUS_2                7                213
  CLUS_3                8                182
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0      0      0
  14Q GAIN WILD-TYPE     35     41     33
D26V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        0      2      2      1
  14Q GAIN WILD-TYPE     54     56     42     44
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                2                 56
  CLUS_3                2                 42
  CLUS_4                1                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        3      0      2
  14Q GAIN WILD-TYPE     61     33    102
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 61
  CLUS_2                0                 33
  CLUS_3                2                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      2      3
  14Q GAIN WILD-TYPE     43     65     33
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                2                 65
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        4      0      2
  14Q GAIN WILD-TYPE     62     21     58
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                0                 21
  CLUS_3                2                 58

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        9      7      2      4
  15Q GAIN WILD-TYPE    138     89    150    109
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                138
  CLUS_2                7                 89
  CLUS_3                2                150
  CLUS_4                4                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      9     10
  15Q GAIN WILD-TYPE    114    162    210
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                114
  CLUS_2                9                162
  CLUS_3               10                210
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        7      5      4      7
  15Q GAIN WILD-TYPE    149    178     83    113
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                149
  CLUS_2                5                178
  CLUS_3                4                 83
  CLUS_4                7                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        7      8      8
  15Q GAIN WILD-TYPE    170    176    177
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                170
  CLUS_2                8                176
  CLUS_3                8                177
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       14      1      9
  15Q GAIN WILD-TYPE    136    219    181
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               14                136
  CLUS_2                1                219
  CLUS_3                9                181
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      0      1
  15Q GAIN WILD-TYPE     34     41     32
D27V6, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                107 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-19-4065         TCGA-19-5947 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-26-6173 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-6174         TCGA-28-2501         TCGA-28-2510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5211         TCGA-28-5213 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5214         TCGA-28-5215         TCGA-28-5216 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1979         TCGA-32-1980         TCGA-32-5222 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4935         TCGA-76-6191 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6283         TCGA-76-6285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6661         TCGA-76-6662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-81-5911         TCGA-87-5896 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      1      2      3
  15Q GAIN WILD-TYPE     53     57     42     42
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                 57
  CLUS_3                2                 42
  CLUS_4                3                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      1      4
  15Q GAIN WILD-TYPE     62     32    100
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 62
  CLUS_2                1                 32
  CLUS_3                4                100
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      7      1
  15Q GAIN WILD-TYPE     44     60     35
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 44
  CLUS_2                7                 60
  CLUS_3                1                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        6      1      1
  15Q GAIN WILD-TYPE     60     20     59
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                1                 20
  CLUS_3                1                 59

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       12     11      3     11
  16P GAIN WILD-TYPE    135     85    149    102
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                135
  CLUS_2               11                 85
  CLUS_3                3                149
  CLUS_4               11                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        6     18     13
  16P GAIN WILD-TYPE    111    153    207
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                111
  CLUS_2               18                153
  CLUS_3               13                207
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        8     17      4      8
  16P GAIN WILD-TYPE    148    166     83    112
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                8                148
  CLUS_2               17                166
  CLUS_3                4                 83
  CLUS_4                8                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       12     15     10
  16P GAIN WILD-TYPE    165    169    175
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                165
  CLUS_2               15                169
  CLUS_3               10                175
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       21      4     12
  16P GAIN WILD-TYPE    129    216    178
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               21                129
  CLUS_2                4                216
  CLUS_3               12                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0      1      0
  16P GAIN WILD-TYPE     35     40     33
D28V6, multiclass
[1] "Remove cluster labels:" "16P GAIN MUTATED"      
clus
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 1                108 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-19-4065         TCGA-19-5947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-26-6173 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-6174         TCGA-28-2501         TCGA-28-2510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5208         TCGA-28-5209 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1979         TCGA-32-1980         TCGA-32-5222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6283 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6286         TCGA-76-6656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6657         TCGA-76-6660         TCGA-76-6661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        6      3      2      3
  16P GAIN WILD-TYPE     48     55     42     42
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                3                 55
  CLUS_3                2                 42
  CLUS_4                3                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        3      3      8
  16P GAIN WILD-TYPE     61     30     96
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 61
  CLUS_2                3                 30
  CLUS_3                8                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        2      3      2
  16P GAIN WILD-TYPE     42     64     34
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                3                 64
  CLUS_3                2                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4      0      3
  16P GAIN WILD-TYPE     62     21     57
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                0                 21
  CLUS_3                3                 57

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       10     12      4     10
  16Q GAIN WILD-TYPE    137     84    148    103
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                137
  CLUS_2               12                 84
  CLUS_3                4                148
  CLUS_4               10                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        6     18     12
  16Q GAIN WILD-TYPE    111    153    208
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                111
  CLUS_2               18                153
  CLUS_3               12                208
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        7     17      5      7
  16Q GAIN WILD-TYPE    149    166     82    113
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                149
  CLUS_2               17                166
  CLUS_3                5                 82
  CLUS_4                7                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       10     18      8
  16Q GAIN WILD-TYPE    167    166    177
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                167
  CLUS_2               18                166
  CLUS_3                8                177
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       19      5     12
  16Q GAIN WILD-TYPE    131    215    178
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               19                131
  CLUS_2                5                215
  CLUS_3               12                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0      1      0
  16Q GAIN WILD-TYPE     35     40     33
D29V6, multiclass
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 1                108 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-15-1444         TCGA-19-4065         TCGA-19-5947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-26-6173 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-6174         TCGA-28-2501         TCGA-28-2510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5208         TCGA-28-5209 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1979         TCGA-32-1980         TCGA-32-5222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6283 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6286         TCGA-76-6656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6657         TCGA-76-6660         TCGA-76-6661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        5      4      2      2
  16Q GAIN WILD-TYPE     49     54     42     43
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                4                 54
  CLUS_3                2                 42
  CLUS_4                2                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        4      2      7
  16Q GAIN WILD-TYPE     60     31     97
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 60
  CLUS_2                2                 31
  CLUS_3                7                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        2      2      3
  16Q GAIN WILD-TYPE     42     65     33
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                2                 65
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        3      0      4
  16Q GAIN WILD-TYPE     63     21     56
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                0                 21
  CLUS_3                4                 56

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        9     14      4     16
  17P GAIN WILD-TYPE    138     82    148     97
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                138
  CLUS_2               14                 82
  CLUS_3                4                148
  CLUS_4               16                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        7     22     14
  17P GAIN WILD-TYPE    110    149    206
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                7                110
  CLUS_2               22                149
  CLUS_3               14                206
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        6     19      7     13
  17P GAIN WILD-TYPE    150    164     80    107
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                6                150
  CLUS_2               19                164
  CLUS_3                7                 80
  CLUS_4               13                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       11     20     14
  17P GAIN WILD-TYPE    166    164    171
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                166
  CLUS_2               20                164
  CLUS_3               14                171
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       26      8     11
  17P GAIN WILD-TYPE    124    212    179
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               26                124
  CLUS_2                8                212
  CLUS_3               11                179
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      1      2
  17P GAIN WILD-TYPE     34     40     31
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 40
  CLUS_3                2                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      5      0      4
  17P GAIN WILD-TYPE     52     53     44     41
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                5                 53
  CLUS_3                0                 44
  CLUS_4                4                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      1      9
  17P GAIN WILD-TYPE     63     32     95
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 63
  CLUS_2                1                 32
  CLUS_3                9                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        5      3      3
  17P GAIN WILD-TYPE     39     64     33
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                 39
  CLUS_2                3                 64
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        3      1      7
  17P GAIN WILD-TYPE     63     20     53
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                1                 20
  CLUS_3                7                 53

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       13     17      6     17
  17Q GAIN WILD-TYPE    134     79    146     96
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               13                134
  CLUS_2               17                 79
  CLUS_3                6                146
  CLUS_4               17                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        9     25     19
  17Q GAIN WILD-TYPE    108    146    201
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                9                108
  CLUS_2               25                146
  CLUS_3               19                201
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        9     22     10     15
  17Q GAIN WILD-TYPE    147    161     77    105
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                9                147
  CLUS_2               22                161
  CLUS_3               10                 77
  CLUS_4               15                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       16     24     16
  17Q GAIN WILD-TYPE    161    160    169
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               16                161
  CLUS_2               24                160
  CLUS_3               16                169
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       31     11     14
  17Q GAIN WILD-TYPE    119    209    176
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               31                119
  CLUS_2               11                209
  CLUS_3               14                176
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        1      2      3
  17Q GAIN WILD-TYPE     34     39     30
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                2                 39
  CLUS_3                3                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        3      7      0      4
  17Q GAIN WILD-TYPE     51     51     44     41
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                7                 51
  CLUS_3                0                 44
  CLUS_4                4                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        1      1     12
  17Q GAIN WILD-TYPE     63     32     92
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 63
  CLUS_2                1                 32
  CLUS_3               12                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        6      7      4
  17Q GAIN WILD-TYPE     38     60     32
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                 38
  CLUS_2                7                 60
  CLUS_3                4                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        6      2      9
  17Q GAIN WILD-TYPE     60     19     51
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                2                 19
  CLUS_3                9                 51

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       10     25      5     15
  18P GAIN WILD-TYPE    137     71    147     98
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                137
  CLUS_2               25                 71
  CLUS_3                5                147
  CLUS_4               15                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        3     28     24
  18P GAIN WILD-TYPE    114    143    196
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                114
  CLUS_2               28                143
  CLUS_3               24                196
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       10     25      8     14
  18P GAIN WILD-TYPE    146    158     79    106
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                146
  CLUS_2               25                158
  CLUS_3                8                 79
  CLUS_4               14                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       16     26     15
  18P GAIN WILD-TYPE    161    158    170
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               16                161
  CLUS_2               26                158
  CLUS_3               15                170
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       31      3     24
  18P GAIN WILD-TYPE    119    217    166
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               31                119
  CLUS_2                3                217
  CLUS_3               24                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        2      2      4
  18P GAIN WILD-TYPE     33     39     29
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                2                 39
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        9      6      3      7
  18P GAIN WILD-TYPE     45     52     41     38
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 45
  CLUS_2                6                 52
  CLUS_3                3                 41
  CLUS_4                7                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        6      3     16
  18P GAIN WILD-TYPE     58     30     88
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 58
  CLUS_2                3                 30
  CLUS_3               16                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        6     11      0
  18P GAIN WILD-TYPE     38     56     36
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 38
  CLUS_2               11                 56
  CLUS_3                0                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        9      3      5
  18P GAIN WILD-TYPE     57     18     55
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 57
  CLUS_2                3                 18
  CLUS_3                5                 55

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        9     24      5     16
  18Q GAIN WILD-TYPE    138     72    147     97
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                138
  CLUS_2               24                 72
  CLUS_3                5                147
  CLUS_4               16                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        4     29     21
  18Q GAIN WILD-TYPE    113    142    199
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                113
  CLUS_2               29                142
  CLUS_3               21                199
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       10     25      8     13
  18Q GAIN WILD-TYPE    146    158     79    107
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                146
  CLUS_2               25                158
  CLUS_3                8                 79
  CLUS_4               13                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       17     25     14
  18Q GAIN WILD-TYPE    160    159    171
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               17                160
  CLUS_2               25                159
  CLUS_3               14                171
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       33      3     21
  18Q GAIN WILD-TYPE    117    217    169
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               33                117
  CLUS_2                3                217
  CLUS_3               21                169
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        2      3      4
  18Q GAIN WILD-TYPE     33     38     29
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                3                 38
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        9      7      3      7
  18Q GAIN WILD-TYPE     45     51     41     38
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                 45
  CLUS_2                7                 51
  CLUS_3                3                 41
  CLUS_4                7                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        7      3     16
  18Q GAIN WILD-TYPE     57     30     88
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                7                 57
  CLUS_2                3                 30
  CLUS_3               16                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        6     11      0
  18Q GAIN WILD-TYPE     38     56     36
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 38
  CLUS_2               11                 56
  CLUS_3                0                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       10      3      4
  18Q GAIN WILD-TYPE     56     18     56
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                 56
  CLUS_2                3                 18
  CLUS_3                4                 56

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       52     35     91     21
  19P GAIN WILD-TYPE     95     61     61     92
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               52                 95
  CLUS_2               35                 61
  CLUS_3               91                 61
  CLUS_4               21                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       67     46     86
  19P GAIN WILD-TYPE     50    125    134
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               67                 50
  CLUS_2               46                125
  CLUS_3               86                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       67     77     24     45
  19P GAIN WILD-TYPE     89    106     63     75
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               67                 89
  CLUS_2               77                106
  CLUS_3               24                 63
  CLUS_4               45                 75
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       89     53     71
  19P GAIN WILD-TYPE     88    131    114
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               89                 88
  CLUS_2               53                131
  CLUS_3               71                114
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       44    131     45
  19P GAIN WILD-TYPE    106     89    145
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               44                106
  CLUS_2              131                 89
  CLUS_3               45                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       11     20      5
  19P GAIN WILD-TYPE     24     21     28
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               11                 24
  CLUS_2               20                 21
  CLUS_3                5                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       18     16     26     15
  19P GAIN WILD-TYPE     36     42     18     30
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               18                 36
  CLUS_2               16                 42
  CLUS_3               26                 18
  CLUS_4               15                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       39      8     28
  19P GAIN WILD-TYPE     25     25     76
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               39                 25
  CLUS_2                8                 25
  CLUS_3               28                 76
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       10     26     13
  19P GAIN WILD-TYPE     34     41     23
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                 34
  CLUS_2               26                 41
  CLUS_3               13                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       20     13     16
  19P GAIN WILD-TYPE     46      8     44
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               20                 46
  CLUS_2               13                  8
  CLUS_3               16                 44

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       46     28     85     15
  19Q GAIN WILD-TYPE    101     68     67     98
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               46                101
  CLUS_2               28                 68
  CLUS_3               85                 67
  CLUS_4               15                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       62     32     80
  19Q GAIN WILD-TYPE     55    139    140
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               62                 55
  CLUS_2               32                139
  CLUS_3               80                140
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       62     60     22     42
  19Q GAIN WILD-TYPE     94    123     65     78
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               62                 94
  CLUS_2               60                123
  CLUS_3               22                 65
  CLUS_4               42                 78
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       74     45     67
  19Q GAIN WILD-TYPE    103    139    118
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               74                103
  CLUS_2               45                139
  CLUS_3               67                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       35    122     36
  19Q GAIN WILD-TYPE    115     98    154
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               35                115
  CLUS_2              122                 98
  CLUS_3               36                154
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       10     17      3
  19Q GAIN WILD-TYPE     25     24     30
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                 25
  CLUS_2               17                 24
  CLUS_3                3                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       13     14     21     13
  19Q GAIN WILD-TYPE     41     44     23     32
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 41
  CLUS_2               14                 44
  CLUS_3               21                 23
  CLUS_4               13                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       33      6     22
  19Q GAIN WILD-TYPE     31     27     82
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               33                 31
  CLUS_2                6                 27
  CLUS_3               22                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        8     26     12
  19Q GAIN WILD-TYPE     36     41     24
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 36
  CLUS_2               26                 41
  CLUS_3               12                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       20     12     14
  19Q GAIN WILD-TYPE     46      9     46
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 46
  CLUS_2               12                  9
  CLUS_3               14                 46

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       51     26     86     29
  20P GAIN WILD-TYPE     96     70     66     84
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               51                 96
  CLUS_2               26                 70
  CLUS_3               86                 66
  CLUS_4               29                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       70     40     82
  20P GAIN WILD-TYPE     47    131    138
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               70                 47
  CLUS_2               40                131
  CLUS_3               82                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       61     75     20     56
  20P GAIN WILD-TYPE     95    108     67     64
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               61                 95
  CLUS_2               75                108
  CLUS_3               20                 67
  CLUS_4               56                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       86     44     82
  20P GAIN WILD-TYPE     91    140    103
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               86                 91
  CLUS_2               44                140
  CLUS_3               82                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       57    107     53
  20P GAIN WILD-TYPE     93    113    137
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               57                 93
  CLUS_2              107                113
  CLUS_3               53                137
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       13     18      5
  20P GAIN WILD-TYPE     22     23     28
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 22
  CLUS_2               18                 23
  CLUS_3                5                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       18     15     23     16
  20P GAIN WILD-TYPE     36     43     21     29
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               18                 36
  CLUS_2               15                 43
  CLUS_3               23                 21
  CLUS_4               16                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       33      8     31
  20P GAIN WILD-TYPE     31     25     73
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               33                 31
  CLUS_2                8                 25
  CLUS_3               31                 73
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       14     26     13
  20P GAIN WILD-TYPE     30     41     23
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               14                 30
  CLUS_2               26                 41
  CLUS_3               13                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       22     15     16
  20P GAIN WILD-TYPE     44      6     44
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               22                 44
  CLUS_2               15                  6
  CLUS_3               16                 44

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       50     28     86     27
  20Q GAIN WILD-TYPE     97     68     66     86
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               50                 97
  CLUS_2               28                 68
  CLUS_3               86                 66
  CLUS_4               27                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       69     40     82
  20Q GAIN WILD-TYPE     48    131    138
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               69                 48
  CLUS_2               40                131
  CLUS_3               82                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       62     74     19     55
  20Q GAIN WILD-TYPE     94    109     68     65
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               62                 94
  CLUS_2               74                109
  CLUS_3               19                 68
  CLUS_4               55                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       84     45     81
  20Q GAIN WILD-TYPE     93    139    104
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               84                 93
  CLUS_2               45                139
  CLUS_3               81                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       55    106     54
  20Q GAIN WILD-TYPE     95    114    136
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               55                 95
  CLUS_2              106                114
  CLUS_3               54                136
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       13     19      4
  20Q GAIN WILD-TYPE     22     22     29
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               13                 22
  CLUS_2               19                 22
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       20     14     23     17
  20Q GAIN WILD-TYPE     34     44     21     28
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               20                 34
  CLUS_2               14                 44
  CLUS_3               23                 21
  CLUS_4               17                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       34      9     31
  20Q GAIN WILD-TYPE     30     24     73
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               34                 30
  CLUS_2                9                 24
  CLUS_3               31                 73
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       14     26     13
  20Q GAIN WILD-TYPE     30     41     23
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               14                 30
  CLUS_2               26                 41
  CLUS_3               13                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       22     15     16
  20Q GAIN WILD-TYPE     44      6     44
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               22                 44
  CLUS_2               15                  6
  CLUS_3               16                 44

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       28     11      9      7
  21Q GAIN WILD-TYPE    119     85    143    106
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               28                119
  CLUS_2               11                 85
  CLUS_3                9                143
  CLUS_4                7                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        7     12     36
  21Q GAIN WILD-TYPE    110    159    184
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                110
  CLUS_2               12                159
  CLUS_3               36                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       24     15      4     19
  21Q GAIN WILD-TYPE    132    168     83    101
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               24                132
  CLUS_2               15                168
  CLUS_3                4                 83
  CLUS_4               19                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       15     14     33
  21Q GAIN WILD-TYPE    162    170    152
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                162
  CLUS_2               14                170
  CLUS_3               33                152
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       27     11     24
  21Q GAIN WILD-TYPE    123    209    166
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               27                123
  CLUS_2               11                209
  CLUS_3               24                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        3      2      3
  21Q GAIN WILD-TYPE     32     39     30
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                 32
  CLUS_2                2                 39
  CLUS_3                3                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        8      3      4      6
  21Q GAIN WILD-TYPE     46     55     40     39
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                3                 55
  CLUS_3                4                 40
  CLUS_4                6                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        6      5     10
  21Q GAIN WILD-TYPE     58     28     94
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                 58
  CLUS_2                5                 28
  CLUS_3               10                 94
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2     16      5
  21Q GAIN WILD-TYPE     42     51     31
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 42
  CLUS_2               16                 51
  CLUS_3                5                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       16      1      6
  21Q GAIN WILD-TYPE     50     20     54
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               16                 50
  CLUS_2                1                 20
  CLUS_3                6                 54

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        6     14      0     11
  22Q GAIN WILD-TYPE    141     82    152    102
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                141
  CLUS_2               14                 82
  CLUS_3                0                152
  CLUS_4               11                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0     18     13
  22Q GAIN WILD-TYPE    117    153    207
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                117
  CLUS_2               18                153
  CLUS_3               13                207
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        6     11      5     10
  22Q GAIN WILD-TYPE    150    172     82    110
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                150
  CLUS_2               11                172
  CLUS_3                5                 82
  CLUS_4               10                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        7     14     11
  22Q GAIN WILD-TYPE    170    170    174
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                7                170
  CLUS_2               14                170
  CLUS_3               11                174
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       18      3     13
  22Q GAIN WILD-TYPE    132    217    177
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               18                132
  CLUS_2                3                217
  CLUS_3               13                177
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      0      2
  22Q GAIN WILD-TYPE     33     41     31
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                0                 41
  CLUS_3                2                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        4      5      0      2
  22Q GAIN WILD-TYPE     50     53     44     43
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                5                 53
  CLUS_3                0                 44
  CLUS_4                2                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      2      9
  22Q GAIN WILD-TYPE     64     31     95
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 64
  CLUS_2                2                 31
  CLUS_3                9                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        6      5      1
  22Q GAIN WILD-TYPE     38     62     35
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                 38
  CLUS_2                5                 62
  CLUS_3                1                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        6      0      6
  22Q GAIN WILD-TYPE     60     21     54
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                0                 21
  CLUS_3                6                 54

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        5      5      3      1
  XQ GAIN WILD-TYPE    142     91    149    112
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5               142
  CLUS_2               5                91
  CLUS_3               3               149
  CLUS_4               1               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      3      9
  XQ GAIN WILD-TYPE    115    168    211
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2               115
  CLUS_2               3               168
  CLUS_3               9               211
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        5      5      2      4
  XQ GAIN WILD-TYPE    151    178     85    116
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5               151
  CLUS_2               5               178
  CLUS_3               2                85
  CLUS_4               4               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        6      4      6
  XQ GAIN WILD-TYPE    171    180    179
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6               171
  CLUS_2               4               180
  CLUS_3               6               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        7      5      4
  XQ GAIN WILD-TYPE    143    215    186
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7               143
  CLUS_2               5               215
  CLUS_3               4               186
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      1      0
  XQ GAIN WILD-TYPE     33     40     33
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                33
  CLUS_2               1                40
  CLUS_3               0                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        0      1      1      1
  XQ GAIN WILD-TYPE     54     57     43     44
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                54
  CLUS_2               1                57
  CLUS_3               1                43
  CLUS_4               1                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      0      2
  XQ GAIN WILD-TYPE     63     33    102
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                63
  CLUS_2               0                33
  CLUS_3               2               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      6      0
  XQ GAIN WILD-TYPE     44     61     36
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                44
  CLUS_2               6                61
  CLUS_3               0                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        5      1      0
  XQ GAIN WILD-TYPE     61     20     60
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                61
  CLUS_2               1                20
  CLUS_3               0                60

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        4      3      2      4
  1P LOSS WILD-TYPE    143     93    150    109
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4               143
  CLUS_2               3                93
  CLUS_3               2               150
  CLUS_4               4               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        3      7      3
  1P LOSS WILD-TYPE    114    164    217
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3               114
  CLUS_2               7               164
  CLUS_3               3               217
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        4      6      3      3
  1P LOSS WILD-TYPE    152    177     84    117
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4               152
  CLUS_2               6               177
  CLUS_3               3                84
  CLUS_4               3               117
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        8      6      2
  1P LOSS WILD-TYPE    169    178    183
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8               169
  CLUS_2               6               178
  CLUS_3               2               183
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        2      4     10
  1P LOSS WILD-TYPE    148    216    180
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2               148
  CLUS_2               4               216
  CLUS_3              10               180
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        1      0      3
  1P LOSS WILD-TYPE     34     41     30
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                41
  CLUS_3               3                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        1      3      0      3
  1P LOSS WILD-TYPE     53     55     44     42
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                53
  CLUS_2               3                55
  CLUS_3               0                44
  CLUS_4               3                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        0      2      5
  1P LOSS WILD-TYPE     64     31     99
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                64
  CLUS_2               2                31
  CLUS_3               5                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        2      0      2
  1P LOSS WILD-TYPE     42     67     34
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                42
  CLUS_2               0                67
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        0      0      4
  1P LOSS WILD-TYPE     66     21     56
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                66
  CLUS_2               0                21
  CLUS_3               4                56

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        3      2      3      4
  1Q LOSS WILD-TYPE    144     94    149    109
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3               144
  CLUS_2               2                94
  CLUS_3               3               149
  CLUS_4               4               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      6      3
  1Q LOSS WILD-TYPE    114    165    217
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3               114
  CLUS_2               6               165
  CLUS_3               3               217
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        5      5      3      2
  1Q LOSS WILD-TYPE    151    178     84    118
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5               151
  CLUS_2               5               178
  CLUS_3               3                84
  CLUS_4               2               118
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      5      3
  1Q LOSS WILD-TYPE    170    179    182
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7               170
  CLUS_2               5               179
  CLUS_3               3               182
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        2      5      8
  1Q LOSS WILD-TYPE    148    215    182
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2               148
  CLUS_2               5               215
  CLUS_3               8               182
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        1      0      3
  1Q LOSS WILD-TYPE     34     41     30
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                34
  CLUS_2               0                41
  CLUS_3               3                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        1      2      0      3
  1Q LOSS WILD-TYPE     53     56     44     42
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                53
  CLUS_2               2                56
  CLUS_3               0                44
  CLUS_4               3                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      2      4
  1Q LOSS WILD-TYPE     64     31    100
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                64
  CLUS_2               2                31
  CLUS_3               4               100
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        2      1      2
  1Q LOSS WILD-TYPE     42     66     34
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                42
  CLUS_2               1                66
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        1      0      4
  1Q LOSS WILD-TYPE     65     21     56
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                65
  CLUS_2               0                21
  CLUS_3               4                56

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        8     11      5      5
  2P LOSS WILD-TYPE    139     85    147    108
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8               139
  CLUS_2              11                85
  CLUS_3               5               147
  CLUS_4               5               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2     15     12
  2P LOSS WILD-TYPE    115    156    208
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2               115
  CLUS_2              15               156
  CLUS_3              12               208
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        5     13      6      6
  2P LOSS WILD-TYPE    151    170     81    114
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               151
  CLUS_2              13               170
  CLUS_3               6                81
  CLUS_4               6               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        9     13      8
  2P LOSS WILD-TYPE    168    171    177
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9               168
  CLUS_2              13               171
  CLUS_3               8               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       17      2     11
  2P LOSS WILD-TYPE    133    218    179
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              17               133
  CLUS_2               2               218
  CLUS_3              11               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        0      1      6
  2P LOSS WILD-TYPE     35     40     27
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                35
  CLUS_2               1                40
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        4      3      2      2
  2P LOSS WILD-TYPE     50     55     42     43
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               3                55
  CLUS_3               2                42
  CLUS_4               2                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      3      6
  2P LOSS WILD-TYPE     62     30     98
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                62
  CLUS_2               3                30
  CLUS_3               6                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      3      0
  2P LOSS WILD-TYPE     40     64     36
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                40
  CLUS_2               3                64
  CLUS_3               0                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        3      0      4
  2P LOSS WILD-TYPE     63     21     56
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                63
  CLUS_2               0                21
  CLUS_3               4                56

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        8     11      5      5
  2Q LOSS WILD-TYPE    139     85    147    108
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8               139
  CLUS_2              11                85
  CLUS_3               5               147
  CLUS_4               5               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        2     15     12
  2Q LOSS WILD-TYPE    115    156    208
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2               115
  CLUS_2              15               156
  CLUS_3              12               208
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        5     13      6      6
  2Q LOSS WILD-TYPE    151    170     81    114
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5               151
  CLUS_2              13               170
  CLUS_3               6                81
  CLUS_4               6               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        9     13      8
  2Q LOSS WILD-TYPE    168    171    177
D44V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9               168
  CLUS_2              13               171
  CLUS_3               8               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       17      2     11
  2Q LOSS WILD-TYPE    133    218    179
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              17               133
  CLUS_2               2               218
  CLUS_3              11               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        0      1      6
  2Q LOSS WILD-TYPE     35     40     27
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                35
  CLUS_2               1                40
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        4      2      2      2
  2Q LOSS WILD-TYPE     50     56     42     43
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               2                56
  CLUS_3               2                42
  CLUS_4               2                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        2      3      5
  2Q LOSS WILD-TYPE     62     30     99
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                62
  CLUS_2               3                30
  CLUS_3               5                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5      3      0
  2Q LOSS WILD-TYPE     39     64     36
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                39
  CLUS_2               3                64
  CLUS_3               0                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        3      0      5
  2Q LOSS WILD-TYPE     63     21     55
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                63
  CLUS_2               0                21
  CLUS_3               5                55

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        9      6     12      9
  3P LOSS WILD-TYPE    138     90    140    104
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9               138
  CLUS_2               6                90
  CLUS_3              12               140
  CLUS_4               9               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        9     10     17
  3P LOSS WILD-TYPE    108    161    203
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9               108
  CLUS_2              10               161
  CLUS_3              17               203
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       12     11      5     11
  3P LOSS WILD-TYPE    144    172     82    109
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              12               144
  CLUS_2              11               172
  CLUS_3               5                82
  CLUS_4              11               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       11     12     16
  3P LOSS WILD-TYPE    166    172    169
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11               166
  CLUS_2              12               172
  CLUS_3              16               169
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       19      5     15
  3P LOSS WILD-TYPE    131    215    175
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              19               131
  CLUS_2               5               215
  CLUS_3              15               175
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        3      0      3
  3P LOSS WILD-TYPE     32     41     30
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                32
  CLUS_2               0                41
  CLUS_3               3                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        4      2      6      5
  3P LOSS WILD-TYPE     50     56     38     40
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               2                56
  CLUS_3               6                38
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7      1      9
  3P LOSS WILD-TYPE     57     32     95
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                57
  CLUS_2               1                32
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        3      6      1
  3P LOSS WILD-TYPE     41     61     35
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                41
  CLUS_2               6                61
  CLUS_3               1                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        8      1      1
  3P LOSS WILD-TYPE     58     20     59
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8                58
  CLUS_2               1                20
  CLUS_3               1                59

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        7      3      9     11
  3Q LOSS WILD-TYPE    140     93    143    102
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               140
  CLUS_2               3                93
  CLUS_3               9               143
  CLUS_4              11               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        7      9     14
  3Q LOSS WILD-TYPE    110    162    206
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               110
  CLUS_2               9               162
  CLUS_3              14               206
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        8      9      8      8
  3Q LOSS WILD-TYPE    148    174     79    112
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               8               148
  CLUS_2               9               174
  CLUS_3               8                79
  CLUS_4               8               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       10     13     10
  3Q LOSS WILD-TYPE    167    171    175
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10               167
  CLUS_2              13               171
  CLUS_3              10               175
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       19      2     12
  3Q LOSS WILD-TYPE    131    218    178
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              19               131
  CLUS_2               2               218
  CLUS_3              12               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        2      0      2
  3Q LOSS WILD-TYPE     33     41     31
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                33
  CLUS_2               0                41
  CLUS_3               2                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        3      3      4      4
  3Q LOSS WILD-TYPE     51     55     40     41
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                51
  CLUS_2               3                55
  CLUS_3               4                40
  CLUS_4               4                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        5      1      8
  3Q LOSS WILD-TYPE     59     32     96
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                59
  CLUS_2               1                32
  CLUS_3               8                96
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        2      4      1
  3Q LOSS WILD-TYPE     42     63     35
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                42
  CLUS_2               4                63
  CLUS_3               1                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        6      1      0
  3Q LOSS WILD-TYPE     60     20     60
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                60
  CLUS_2               1                20
  CLUS_3               0                60

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       11     16     11     12
  4P LOSS WILD-TYPE    136     80    141    101
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              11               136
  CLUS_2              16                80
  CLUS_3              11               141
  CLUS_4              12               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5     26     19
  4P LOSS WILD-TYPE    112    145    201
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5               112
  CLUS_2              26               145
  CLUS_3              19               201
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        7     25      8     12
  4P LOSS WILD-TYPE    149    158     79    108
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7               149
  CLUS_2              25               158
  CLUS_3               8                79
  CLUS_4              12               108
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       16     22     14
  4P LOSS WILD-TYPE    161    162    171
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              16               161
  CLUS_2              22               162
  CLUS_3              14               171
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       24     15     14
  4P LOSS WILD-TYPE    126    205    176
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              24               126
  CLUS_2              15               205
  CLUS_3              14               176
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        2      4      3
  4P LOSS WILD-TYPE     33     37     30
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                33
  CLUS_2               4                37
  CLUS_3               3                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        4      3      7      5
  4P LOSS WILD-TYPE     50     55     37     40
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               3                55
  CLUS_3               7                37
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        9      1      9
  4P LOSS WILD-TYPE     55     32     95
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                55
  CLUS_2               1                32
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        6      8      6
  4P LOSS WILD-TYPE     38     59     30
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                38
  CLUS_2               8                59
  CLUS_3               6                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       10      2      8
  4P LOSS WILD-TYPE     56     19     52
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              10                56
  CLUS_2               2                19
  CLUS_3               8                52

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       10     20      7     13
  4Q LOSS WILD-TYPE    137     76    145    100
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10               137
  CLUS_2              20                76
  CLUS_3               7               145
  CLUS_4              13               100
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        5     27     18
  4Q LOSS WILD-TYPE    112    144    202
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5               112
  CLUS_2              27               144
  CLUS_3              18               202
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        6     25      9     13
  4Q LOSS WILD-TYPE    150    158     78    107
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6               150
  CLUS_2              25               158
  CLUS_3               9                78
  CLUS_4              13               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       15     25     13
  4Q LOSS WILD-TYPE    162    159    172
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              15               162
  CLUS_2              25               159
  CLUS_3              13               172
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       26     11     17
  4Q LOSS WILD-TYPE    124    209    173
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              26               124
  CLUS_2              11               209
  CLUS_3              17               173
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        1      4      7
  4Q LOSS WILD-TYPE     34     37     26
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                34
  CLUS_2               4                37
  CLUS_3               7                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        4      6      6      5
  4Q LOSS WILD-TYPE     50     52     38     40
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               6                52
  CLUS_3               6                38
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        8      1     12
  4Q LOSS WILD-TYPE     56     32     92
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8                56
  CLUS_2               1                32
  CLUS_3              12                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        8      7      6
  4Q LOSS WILD-TYPE     36     60     30
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8                36
  CLUS_2               7                60
  CLUS_3               6                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       10      2      9
  4Q LOSS WILD-TYPE     56     19     51
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                56
  CLUS_2               2                19
  CLUS_3               9                51

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        5     20      6      9
  5P LOSS WILD-TYPE    142     76    146    104
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5               142
  CLUS_2              20                76
  CLUS_3               6               146
  CLUS_4               9               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        8     23      9
  5P LOSS WILD-TYPE    109    148    211
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8               109
  CLUS_2              23               148
  CLUS_3               9               211
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        4     24      6      6
  5P LOSS WILD-TYPE    152    159     81    114
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4               152
  CLUS_2              24               159
  CLUS_3               6                81
  CLUS_4               6               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       12     21      7
  5P LOSS WILD-TYPE    165    163    178
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              12               165
  CLUS_2              21               163
  CLUS_3               7               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       16      6     20
  5P LOSS WILD-TYPE    134    214    170
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              16               134
  CLUS_2               6               214
  CLUS_3              20               170
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      2      6
  5P LOSS WILD-TYPE     34     39     27
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                39
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        5      4      3      4
  5P LOSS WILD-TYPE     49     54     41     41
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2               4                54
  CLUS_3               3                41
  CLUS_4               4                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      2     11
  5P LOSS WILD-TYPE     61     31     93
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                61
  CLUS_2               2                31
  CLUS_3              11                93
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        7      6      2
  5P LOSS WILD-TYPE     37     61     34
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               7                37
  CLUS_2               6                61
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      3      6
  5P LOSS WILD-TYPE     60     18     54
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                60
  CLUS_2               3                18
  CLUS_3               6                54

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        6     19      5     11
  5Q LOSS WILD-TYPE    141     77    147    102
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6               141
  CLUS_2              19                77
  CLUS_3               5               147
  CLUS_4              11               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        6     23     12
  5Q LOSS WILD-TYPE    111    148    208
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6               111
  CLUS_2              23               148
  CLUS_3              12               208
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4     25      6      6
  5Q LOSS WILD-TYPE    152    158     81    114
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4               152
  CLUS_2              25               158
  CLUS_3               6                81
  CLUS_4               6               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       11     22      8
  5Q LOSS WILD-TYPE    166    162    177
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              11               166
  CLUS_2              22               162
  CLUS_3               8               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       16      6     21
  5Q LOSS WILD-TYPE    134    214    169
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              16               134
  CLUS_2               6               214
  CLUS_3              21               169
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        1      2      6
  5Q LOSS WILD-TYPE     34     39     27
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                39
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      6      3      4
  5Q LOSS WILD-TYPE     50     52     41     41
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               6                52
  CLUS_3               3                41
  CLUS_4               4                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        3      2     12
  5Q LOSS WILD-TYPE     61     31     92
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                61
  CLUS_2               2                31
  CLUS_3              12                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        8      6      2
  5Q LOSS WILD-TYPE     36     61     34
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                36
  CLUS_2               6                61
  CLUS_3               2                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        7      3      6
  5Q LOSS WILD-TYPE     59     18     54
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               7                59
  CLUS_2               3                18
  CLUS_3               6                54

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       25     15     18     19
  6P LOSS WILD-TYPE    122     81    134     94
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              25               122
  CLUS_2              15                81
  CLUS_3              18               134
  CLUS_4              19                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       17     31     29
  6P LOSS WILD-TYPE    100    140    191
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              17               100
  CLUS_2              31               140
  CLUS_3              29               191
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       24     31     11     16
  6P LOSS WILD-TYPE    132    152     76    104
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              24               132
  CLUS_2              31               152
  CLUS_3              11                76
  CLUS_4              16               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       28     26     28
  6P LOSS WILD-TYPE    149    158    157
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              28               149
  CLUS_2              26               158
  CLUS_3              28               157
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       51     11     22
  6P LOSS WILD-TYPE     99    209    168
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              51                99
  CLUS_2              11               209
  CLUS_3              22               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        8      4      4
  6P LOSS WILD-TYPE     27     37     29
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               8                27
  CLUS_2               4                37
  CLUS_3               4                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       10      9      5      8
  6P LOSS WILD-TYPE     44     49     39     37
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                44
  CLUS_2               9                49
  CLUS_3               5                39
  CLUS_4               8                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        7      9     16
  6P LOSS WILD-TYPE     57     24     88
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                57
  CLUS_2               9                24
  CLUS_3              16                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        8     15      8
  6P LOSS WILD-TYPE     36     52     28
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               8                36
  CLUS_2              15                52
  CLUS_3               8                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       14      2     15
  6P LOSS WILD-TYPE     52     19     45
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              14                52
  CLUS_2               2                19
  CLUS_3              15                45

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       34     22     31     25
  6Q LOSS WILD-TYPE    113     74    121     88
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              34               113
  CLUS_2              22                74
  CLUS_3              31               121
  CLUS_4              25                88
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       26     41     45
  6Q LOSS WILD-TYPE     91    130    175
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              26                91
  CLUS_2              41               130
  CLUS_3              45               175
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       37     43     16     22
  6Q LOSS WILD-TYPE    119    140     71     98
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              37               119
  CLUS_2              43               140
  CLUS_3              16                71
  CLUS_4              22                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       42     40     36
  6Q LOSS WILD-TYPE    135    144    149
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              42               135
  CLUS_2              40               144
  CLUS_3              36               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       62     27     32
  6Q LOSS WILD-TYPE     88    193    158
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              62                88
  CLUS_2              27               193
  CLUS_3              32               158
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        9     10      6
  6Q LOSS WILD-TYPE     26     31     27
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               9                26
  CLUS_2              10                31
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       12     11      8      9
  6Q LOSS WILD-TYPE     42     47     36     36
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              12                42
  CLUS_2              11                47
  CLUS_3               8                36
  CLUS_4               9                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       12     10     18
  6Q LOSS WILD-TYPE     52     23     86
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              12                52
  CLUS_2              10                23
  CLUS_3              18                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       10     22      9
  6Q LOSS WILD-TYPE     34     45     27
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              10                34
  CLUS_2              22                45
  CLUS_3               9                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       20      6     15
  6Q LOSS WILD-TYPE     46     15     45
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              20                46
  CLUS_2               6                15
  CLUS_3              15                45

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        0      4      1      3
  7P LOSS WILD-TYPE    147     92    151    110
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0               147
  CLUS_2               4                92
  CLUS_3               1               151
  CLUS_4               3               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        1      6      1
  7P LOSS WILD-TYPE    116    165    219
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1               116
  CLUS_2               6               165
  CLUS_3               1               219
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        1      5      1      1
  7P LOSS WILD-TYPE    155    178     86    119
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1               155
  CLUS_2               5               178
  CLUS_3               1                86
  CLUS_4               1               119
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        1      6      1
  7P LOSS WILD-TYPE    176    178    184
D53V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1               176
  CLUS_2               6               178
  CLUS_3               1               184
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        3      0      5
  7P LOSS WILD-TYPE    147    220    185
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3               147
  CLUS_2               0               220
  CLUS_3               5               185
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        0      0      0
  7P LOSS WILD-TYPE     35     41     33
D53V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        0      0      0      0
  7P LOSS WILD-TYPE     54     58     44     45
D53V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        0      0      0
  7P LOSS WILD-TYPE     64     33    104
D53V8, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        0      0      0
  7P LOSS WILD-TYPE     44     67     36
D53V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        0      0      0
  7P LOSS WILD-TYPE     66     21     60
D53V10, multiclass

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      3      1      2
  7Q LOSS WILD-TYPE    147     93    151    111
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0               147
  CLUS_2               3                93
  CLUS_3               1               151
  CLUS_4               2               111
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      4      1
  7Q LOSS WILD-TYPE    116    167    219
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1               116
  CLUS_2               4               167
  CLUS_3               1               219
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        1      3      1      1
  7Q LOSS WILD-TYPE    155    180     86    119
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1               155
  CLUS_2               3               180
  CLUS_3               1                86
  CLUS_4               1               119
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      4      1
  7Q LOSS WILD-TYPE    176    180    184
D54V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1               176
  CLUS_2               4               180
  CLUS_3               1               184
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      0      3
  7Q LOSS WILD-TYPE    147    220    187
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3               147
  CLUS_2               0               220
  CLUS_3               3               187
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      0      0
  7Q LOSS WILD-TYPE     35     41     33
D54V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      0      0      0
  7Q LOSS WILD-TYPE     54     58     44     45
D54V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      0      0
  7Q LOSS WILD-TYPE     64     33    104
D54V8, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      0      0
  7Q LOSS WILD-TYPE     44     67     36
D54V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      0      0
  7Q LOSS WILD-TYPE     66     21     60
D54V10, multiclass

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       20      8     14     11
  8P LOSS WILD-TYPE    127     88    138    102
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              20               127
  CLUS_2               8                88
  CLUS_3              14               138
  CLUS_4              11               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        9     17     27
  8P LOSS WILD-TYPE    108    154    193
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               9               108
  CLUS_2              17               154
  CLUS_3              27               193
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       24     17      7     10
  8P LOSS WILD-TYPE    132    166     80    110
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              24               132
  CLUS_2              17               166
  CLUS_3               7                80
  CLUS_4              10               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       18     21     19
  8P LOSS WILD-TYPE    159    163    166
D55V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              18               159
  CLUS_2              21               163
  CLUS_3              19               166
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       23     15     20
  8P LOSS WILD-TYPE    127    205    170
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              23               127
  CLUS_2              15               205
  CLUS_3              20               170
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        2      4      4
  8P LOSS WILD-TYPE     33     37     29
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                33
  CLUS_2               4                37
  CLUS_3               4                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        4      5      3      5
  8P LOSS WILD-TYPE     50     53     41     40
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               5                53
  CLUS_3               3                41
  CLUS_4               5                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      3      9
  8P LOSS WILD-TYPE     59     30     95
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                59
  CLUS_2               3                30
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        3      9      3
  8P LOSS WILD-TYPE     41     58     33
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                41
  CLUS_2               9                58
  CLUS_3               3                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       10      1      4
  8P LOSS WILD-TYPE     56     20     56
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              10                56
  CLUS_2               1                20
  CLUS_3               4                56

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       15      7     10      7
  8Q LOSS WILD-TYPE    132     89    142    106
D56V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15               132
  CLUS_2               7                89
  CLUS_3              10               142
  CLUS_4               7               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        6     11     22
  8Q LOSS WILD-TYPE    111    160    198
D56V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               6               111
  CLUS_2              11               160
  CLUS_3              22               198
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       21      9      6      6
  8Q LOSS WILD-TYPE    135    174     81    114
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              21               135
  CLUS_2               9               174
  CLUS_3               6                81
  CLUS_4               6               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       13     15     14
  8Q LOSS WILD-TYPE    164    169    171
D56V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              13               164
  CLUS_2              15               169
  CLUS_3              14               171
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       20     10     12
  8Q LOSS WILD-TYPE    130    210    178
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              20               130
  CLUS_2              10               210
  CLUS_3              12               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      2      4
  8Q LOSS WILD-TYPE     34     39     29
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                39
  CLUS_3               4                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      3      2      4
  8Q LOSS WILD-TYPE     51     55     42     41
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                51
  CLUS_2               3                55
  CLUS_3               2                42
  CLUS_4               4                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        3      2      7
  8Q LOSS WILD-TYPE     61     31     97
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                61
  CLUS_2               2                31
  CLUS_3               7                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        2      8      3
  8Q LOSS WILD-TYPE     42     59     33
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                42
  CLUS_2               8                59
  CLUS_3               3                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       10      0      3
  8Q LOSS WILD-TYPE     56     21     57
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10                56
  CLUS_2               0                21
  CLUS_3               3                57

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       50     19     63     43
  9P LOSS WILD-TYPE     97     77     89     70
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              50                97
  CLUS_2              19                77
  CLUS_3              63                89
  CLUS_4              43                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       49     53     73
  9P LOSS WILD-TYPE     68    118    147
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              49                68
  CLUS_2              53               118
  CLUS_3              73               147
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       51     59     30     48
  9P LOSS WILD-TYPE    105    124     57     72
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              51               105
  CLUS_2              59               124
  CLUS_3              30                57
  CLUS_4              48                72
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       69     54     65
  9P LOSS WILD-TYPE    108    130    120
D57V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              69               108
  CLUS_2              54               130
  CLUS_3              65               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       48     80     66
  9P LOSS WILD-TYPE    102    140    124
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              48               102
  CLUS_2              80               140
  CLUS_3              66               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       14     13     11
  9P LOSS WILD-TYPE     21     28     22
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                21
  CLUS_2              13                28
  CLUS_3              11                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       23     18     18     18
  9P LOSS WILD-TYPE     31     40     26     27
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              23                31
  CLUS_2              18                40
  CLUS_3              18                26
  CLUS_4              18                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       31     14     32
  9P LOSS WILD-TYPE     33     19     72
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              31                33
  CLUS_2              14                19
  CLUS_3              32                72
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        8     24     17
  9P LOSS WILD-TYPE     36     43     19
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               8                36
  CLUS_2              24                43
  CLUS_3              17                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       18     11     20
  9P LOSS WILD-TYPE     48     10     40
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              18                48
  CLUS_2              11                10
  CLUS_3              20                40

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       22      9     31     17
  9Q LOSS WILD-TYPE    125     87    121     96
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              22               125
  CLUS_2               9                87
  CLUS_3              31               121
  CLUS_4              17                96
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       28     21     30
  9Q LOSS WILD-TYPE     89    150    190
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              28                89
  CLUS_2              21               150
  CLUS_3              30               190
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       18     29     11     25
  9Q LOSS WILD-TYPE    138    154     76     95
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              18               138
  CLUS_2              29               154
  CLUS_3              11                76
  CLUS_4              25                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       32     20     31
  9Q LOSS WILD-TYPE    145    164    154
D58V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              32               145
  CLUS_2              20               164
  CLUS_3              31               154
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       29     33     24
  9Q LOSS WILD-TYPE    121    187    166
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              29               121
  CLUS_2              33               187
  CLUS_3              24               166
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      2      6
  9Q LOSS WILD-TYPE     30     39     27
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                30
  CLUS_2               2                39
  CLUS_3               6                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       11      5      8      7
  9Q LOSS WILD-TYPE     43     53     36     38
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                43
  CLUS_2               5                53
  CLUS_3               8                36
  CLUS_4               7                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       16      6      9
  9Q LOSS WILD-TYPE     48     27     95
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              16                48
  CLUS_2               6                27
  CLUS_3               9                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        6     14      6
  9Q LOSS WILD-TYPE     38     53     30
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                38
  CLUS_2              14                53
  CLUS_3               6                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       11      5     10
  9Q LOSS WILD-TYPE     55     16     50
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                55
  CLUS_2               5                16
  CLUS_3              10                50

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED      132     64    140     84
  10P LOSS WILD-TYPE     15     32     12     29
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1              132                 15
  CLUS_2               64                 32
  CLUS_3              140                 12
  CLUS_4               84                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED      108    124    188
  10P LOSS WILD-TYPE      9     47     32
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1              108                  9
  CLUS_2              124                 47
  CLUS_3              188                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED      141    145     67    103
  10P LOSS WILD-TYPE     15     38     20     17
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1              141                 15
  CLUS_2              145                 38
  CLUS_3               67                 20
  CLUS_4              103                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED      157    132    167
  10P LOSS WILD-TYPE     20     52     18
D59V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1              157                 20
  CLUS_2              132                 52
  CLUS_3              167                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED      137    212    118
  10P LOSS WILD-TYPE     13      8     72
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1              137                 13
  CLUS_2              212                  8
  CLUS_3              118                 72
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       31     40     27
  10P LOSS WILD-TYPE      4      1      6
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               31                  4
  CLUS_2               40                  1
  CLUS_3               27                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       50     43     43     40
  10P LOSS WILD-TYPE      4     15      1      5
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               50                  4
  CLUS_2               43                 15
  CLUS_3               43                  1
  CLUS_4               40                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       61     30     85
  10P LOSS WILD-TYPE      3      3     19
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               61                  3
  CLUS_2               30                  3
  CLUS_3               85                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       36     61     34
  10P LOSS WILD-TYPE      8      6      2
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               36                  8
  CLUS_2               61                  6
  CLUS_3               34                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       59     21     51
  10P LOSS WILD-TYPE      7      0      9
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               59                  7
  CLUS_2               21                  0
  CLUS_3               51                  9

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED      132     68    145     87
  10Q LOSS WILD-TYPE     15     28      7     26
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1              132                 15
  CLUS_2               68                 28
  CLUS_3              145                  7
  CLUS_4               87                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED      113    129    190
  10Q LOSS WILD-TYPE      4     42     30
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1              113                  4
  CLUS_2              129                 42
  CLUS_3              190                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED      144    152     67    104
  10Q LOSS WILD-TYPE     12     31     20     16
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1              144                 12
  CLUS_2              152                 31
  CLUS_3               67                 20
  CLUS_4              104                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED      160    140    167
  10Q LOSS WILD-TYPE     17     44     18
D60V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1              160                 17
  CLUS_2              140                 44
  CLUS_3              167                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED      138    217    123
  10Q LOSS WILD-TYPE     12      3     67
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1              138                 12
  CLUS_2              217                  3
  CLUS_3              123                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       31     40     26
  10Q LOSS WILD-TYPE      4      1      7
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               31                  4
  CLUS_2               40                  1
  CLUS_3               26                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       49     42     44     41
  10Q LOSS WILD-TYPE      5     16      0      4
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               49                  5
  CLUS_2               42                 16
  CLUS_3               44                  0
  CLUS_4               41                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       61     30     85
  10Q LOSS WILD-TYPE      3      3     19
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               61                  3
  CLUS_2               30                  3
  CLUS_3               85                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       37     62     34
  10Q LOSS WILD-TYPE      7      5      2
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               37                  7
  CLUS_2               62                  5
  CLUS_3               34                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       60     21     52
  10Q LOSS WILD-TYPE      6      0      8
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               60                  6
  CLUS_2               21                  0
  CLUS_3               52                  8

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       27     32      9     21
  11P LOSS WILD-TYPE    120     64    143     92
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               27                120
  CLUS_2               32                 64
  CLUS_3                9                143
  CLUS_4               21                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        8     45     36
  11P LOSS WILD-TYPE    109    126    184
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                8                109
  CLUS_2               45                126
  CLUS_3               36                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       24     35     15     21
  11P LOSS WILD-TYPE    132    148     72     99
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               24                132
  CLUS_2               35                148
  CLUS_3               15                 72
  CLUS_4               21                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       21     45     29
  11P LOSS WILD-TYPE    156    139    156
D61V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               21                156
  CLUS_2               45                139
  CLUS_3               29                156
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       54      9     33
  11P LOSS WILD-TYPE     96    211    157
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               54                 96
  CLUS_2                9                211
  CLUS_3               33                157
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      3      7
  11P LOSS WILD-TYPE     34     38     26
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                3                 38
  CLUS_3                7                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        8     12      6      6
  11P LOSS WILD-TYPE     46     46     38     39
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2               12                 46
  CLUS_3                6                 38
  CLUS_4                6                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      3     22
  11P LOSS WILD-TYPE     57     30     82
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 57
  CLUS_2                3                 30
  CLUS_3               22                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       12     11      3
  11P LOSS WILD-TYPE     32     56     33
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               12                 32
  CLUS_2               11                 56
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       11      2     13
  11P LOSS WILD-TYPE     55     19     47
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               11                 55
  CLUS_2                2                 19
  CLUS_3               13                 47

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       31     28     10     16
  11Q LOSS WILD-TYPE    116     68    142     97
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               31                116
  CLUS_2               28                 68
  CLUS_3               10                142
  CLUS_4               16                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        9     38     38
  11Q LOSS WILD-TYPE    108    133    182
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                9                108
  CLUS_2               38                133
  CLUS_3               38                182
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       25     28     14     22
  11Q LOSS WILD-TYPE    131    155     73     98
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               25                131
  CLUS_2               28                155
  CLUS_3               14                 73
  CLUS_4               22                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       21     36     32
  11Q LOSS WILD-TYPE    156    148    153
D62V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               21                156
  CLUS_2               36                148
  CLUS_3               32                153
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       54     11     25
  11Q LOSS WILD-TYPE     96    209    165
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               54                 96
  CLUS_2               11                209
  CLUS_3               25                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      4      4
  11Q LOSS WILD-TYPE     34     37     29
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                4                 37
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        7     10      6      6
  11Q LOSS WILD-TYPE     47     48     38     39
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 47
  CLUS_2               10                 48
  CLUS_3                6                 38
  CLUS_4                6                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        7      3     19
  11Q LOSS WILD-TYPE     57     30     85
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 57
  CLUS_2                3                 30
  CLUS_3               19                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        8     13      3
  11Q LOSS WILD-TYPE     36     54     33
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                8                 36
  CLUS_2               13                 54
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       13      2      9
  11Q LOSS WILD-TYPE     53     19     51
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               13                 53
  CLUS_2                2                 19
  CLUS_3                9                 51

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       17     17      9     13
  12P LOSS WILD-TYPE    130     79    143    100
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               17                130
  CLUS_2               17                 79
  CLUS_3                9                143
  CLUS_4               13                100
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        6     26     24
  12P LOSS WILD-TYPE    111    145    196
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                111
  CLUS_2               26                145
  CLUS_3               24                196
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       19     22      8      9
  12P LOSS WILD-TYPE    137    161     79    111
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               19                137
  CLUS_2               22                161
  CLUS_3                8                 79
  CLUS_4                9                111
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       20     22     16
  12P LOSS WILD-TYPE    157    162    169
D63V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               20                157
  CLUS_2               22                162
  CLUS_3               16                169
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       27     13     19
  12P LOSS WILD-TYPE    123    207    171
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               27                123
  CLUS_2               13                207
  CLUS_3               19                171
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2      4      2
  12P LOSS WILD-TYPE     33     37     31
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                4                 37
  CLUS_3                2                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        2      5      6      1
  12P LOSS WILD-TYPE     52     53     38     44
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                5                 53
  CLUS_3                6                 38
  CLUS_4                1                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        6      0      8
  12P LOSS WILD-TYPE     58     33     96
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 58
  CLUS_2                0                 33
  CLUS_3                8                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        5      8      3
  12P LOSS WILD-TYPE     39     59     33
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 39
  CLUS_2                8                 59
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        8      2      6
  12P LOSS WILD-TYPE     58     19     54
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                 58
  CLUS_2                2                 19
  CLUS_3                6                 54

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       14     15      9     15
  12Q LOSS WILD-TYPE    133     81    143     98
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                133
  CLUS_2               15                 81
  CLUS_3                9                143
  CLUS_4               15                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        6     26     21
  12Q LOSS WILD-TYPE    111    145    199
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                111
  CLUS_2               26                145
  CLUS_3               21                199
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       16     23      6     11
  12Q LOSS WILD-TYPE    140    160     81    109
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               16                140
  CLUS_2               23                160
  CLUS_3                6                 81
  CLUS_4               11                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       19     23     14
  12Q LOSS WILD-TYPE    158    161    171
D64V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               19                158
  CLUS_2               23                161
  CLUS_3               14                171
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       28      9     20
  12Q LOSS WILD-TYPE    122    211    170
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               28                122
  CLUS_2                9                211
  CLUS_3               20                170
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      3      4
  12Q LOSS WILD-TYPE     33     38     29
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                3                 38
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      6      6      1
  12Q LOSS WILD-TYPE     51     52     38     44
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                6                 52
  CLUS_3                6                 38
  CLUS_4                1                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        6      1      9
  12Q LOSS WILD-TYPE     58     32     95
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 58
  CLUS_2                1                 32
  CLUS_3                9                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        5      7      3
  12Q LOSS WILD-TYPE     39     60     33
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                5                 39
  CLUS_2                7                 60
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        8      1      6
  12Q LOSS WILD-TYPE     58     20     54
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                 58
  CLUS_2                1                 20
  CLUS_3                6                 54

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       57     35     26     45
  13Q LOSS WILD-TYPE     90     61    126     68
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               57                 90
  CLUS_2               35                 61
  CLUS_3               26                126
  CLUS_4               45                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       20     65     78
  13Q LOSS WILD-TYPE     97    106    142
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               20                 97
  CLUS_2               65                106
  CLUS_3               78                142
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       52     61     30     34
  13Q LOSS WILD-TYPE    104    122     57     86
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               52                104
  CLUS_2               61                122
  CLUS_3               30                 57
  CLUS_4               34                 86
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       50     68     59
  13Q LOSS WILD-TYPE    127    116    126
D65V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               50                127
  CLUS_2               68                116
  CLUS_3               59                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       90     27     65
  13Q LOSS WILD-TYPE     60    193    125
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               90                 60
  CLUS_2               27                193
  CLUS_3               65                125
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        7      6     18
  13Q LOSS WILD-TYPE     28     35     15
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                7                 28
  CLUS_2                6                 35
  CLUS_3               18                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       16     20     10     15
  13Q LOSS WILD-TYPE     38     38     34     30
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               16                 38
  CLUS_2               20                 38
  CLUS_3               10                 34
  CLUS_4               15                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       14      8     39
  13Q LOSS WILD-TYPE     50     25     65
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                 50
  CLUS_2                8                 25
  CLUS_3               39                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       20     18      8
  13Q LOSS WILD-TYPE     24     49     28
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               20                 24
  CLUS_2               18                 49
  CLUS_3                8                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       23      4     19
  13Q LOSS WILD-TYPE     43     17     41
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               23                 43
  CLUS_2                4                 17
  CLUS_3               19                 41

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       46     33     17     39
  14Q LOSS WILD-TYPE    101     63    135     74
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               46                101
  CLUS_2               33                 63
  CLUS_3               17                135
  CLUS_4               39                 74
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       18     56     61
  14Q LOSS WILD-TYPE     99    115    159
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               18                 99
  CLUS_2               56                115
  CLUS_3               61                159
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       34     53     23     30
  14Q LOSS WILD-TYPE    122    130     64     90
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               34                122
  CLUS_2               53                130
  CLUS_3               23                 64
  CLUS_4               30                 90
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       47     49     44
  14Q LOSS WILD-TYPE    130    135    141
D66V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               47                130
  CLUS_2               49                135
  CLUS_3               44                141
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       83      9     49
  14Q LOSS WILD-TYPE     67    211    141
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               83                 67
  CLUS_2                9                211
  CLUS_3               49                141
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        9      5     14
  14Q LOSS WILD-TYPE     26     36     19
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                 26
  CLUS_2                5                 36
  CLUS_3               14                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       16     16     10     10
  14Q LOSS WILD-TYPE     38     42     34     35
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               16                 38
  CLUS_2               16                 42
  CLUS_3               10                 34
  CLUS_4               10                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       11      9     32
  14Q LOSS WILD-TYPE     53     24     72
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               11                 53
  CLUS_2                9                 24
  CLUS_3               32                 72
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       20     19     11
  14Q LOSS WILD-TYPE     24     48     25
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               20                 24
  CLUS_2               19                 48
  CLUS_3               11                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       22      2     26
  14Q LOSS WILD-TYPE     44     19     34
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               22                 44
  CLUS_2                2                 19
  CLUS_3               26                 34

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       26     26     12     31
  15Q LOSS WILD-TYPE    121     70    140     82
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               26                121
  CLUS_2               26                 70
  CLUS_3               12                140
  CLUS_4               31                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        8     50     37
  15Q LOSS WILD-TYPE    109    121    183
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                109
  CLUS_2               50                121
  CLUS_3               37                183
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       21     48     15     14
  15Q LOSS WILD-TYPE    135    135     72    106
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               21                135
  CLUS_2               48                135
  CLUS_3               15                 72
  CLUS_4               14                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       32     45     21
  15Q LOSS WILD-TYPE    145    139    164
D67V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               32                145
  CLUS_2               45                139
  CLUS_3               21                164
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       50     20     29
  15Q LOSS WILD-TYPE    100    200    161
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               50                100
  CLUS_2               20                200
  CLUS_3               29                161
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1      1     12
  15Q LOSS WILD-TYPE     34     40     21
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 40
  CLUS_3               12                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        8     17      4      5
  15Q LOSS WILD-TYPE     46     41     40     40
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2               17                 41
  CLUS_3                4                 40
  CLUS_4                5                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        4      5     25
  15Q LOSS WILD-TYPE     60     28     79
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                 60
  CLUS_2                5                 28
  CLUS_3               25                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       16      8      4
  15Q LOSS WILD-TYPE     28     59     32
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               16                 28
  CLUS_2                8                 59
  CLUS_3                4                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       13      1     14
  15Q LOSS WILD-TYPE     53     20     46
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               13                 53
  CLUS_2                1                 20
  CLUS_3               14                 46

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       17     15     12     14
  16P LOSS WILD-TYPE    130     81    140     99
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               17                130
  CLUS_2               15                 81
  CLUS_3               12                140
  CLUS_4               14                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        9     22     27
  16P LOSS WILD-TYPE    108    149    193
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                108
  CLUS_2               22                149
  CLUS_3               27                193
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       16     18     10     17
  16P LOSS WILD-TYPE    140    165     77    103
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               16                140
  CLUS_2               18                165
  CLUS_3               10                 77
  CLUS_4               17                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       18     22     21
  16P LOSS WILD-TYPE    159    162    164
D68V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               18                159
  CLUS_2               22                162
  CLUS_3               21                164
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       25     13     24
  16P LOSS WILD-TYPE    125    207    166
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               25                125
  CLUS_2               13                207
  CLUS_3               24                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        6      2      4
  16P LOSS WILD-TYPE     29     39     29
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                 29
  CLUS_2                2                 39
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        8      5      3      7
  16P LOSS WILD-TYPE     46     53     41     38
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                5                 53
  CLUS_3                3                 41
  CLUS_4                7                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        5      4     14
  16P LOSS WILD-TYPE     59     29     90
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 59
  CLUS_2                4                 29
  CLUS_3               14                 90
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        6     13      4
  16P LOSS WILD-TYPE     38     54     32
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                 38
  CLUS_2               13                 54
  CLUS_3                4                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       12      4      7
  16P LOSS WILD-TYPE     54     17     53
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               12                 54
  CLUS_2                4                 17
  CLUS_3                7                 53

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       24     19     13     17
  16Q LOSS WILD-TYPE    123     77    139     96
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               24                123
  CLUS_2               19                 77
  CLUS_3               13                139
  CLUS_4               17                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       12     24     37
  16Q LOSS WILD-TYPE    105    147    183
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               12                105
  CLUS_2               24                147
  CLUS_3               37                183
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       26     22     11     21
  16Q LOSS WILD-TYPE    130    161     76     99
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               26                130
  CLUS_2               22                161
  CLUS_3               11                 76
  CLUS_4               21                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       24     27     29
  16Q LOSS WILD-TYPE    153    157    156
D69V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               24                153
  CLUS_2               27                157
  CLUS_3               29                156
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       30     19     32
  16Q LOSS WILD-TYPE    120    201    158
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               30                120
  CLUS_2               19                201
  CLUS_3               32                158
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        7      5      6
  16Q LOSS WILD-TYPE     28     36     27
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                7                 28
  CLUS_2                5                 36
  CLUS_3                6                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       12      5      5     12
  16Q LOSS WILD-TYPE     42     53     39     33
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               12                 42
  CLUS_2                5                 53
  CLUS_3                5                 39
  CLUS_4               12                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        7      7     20
  16Q LOSS WILD-TYPE     57     26     84
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                7                 57
  CLUS_2                7                 26
  CLUS_3               20                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        7     15      6
  16Q LOSS WILD-TYPE     37     52     30
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                7                 37
  CLUS_2               15                 52
  CLUS_3                6                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       15      3     10
  16Q LOSS WILD-TYPE     51     18     50
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               15                 51
  CLUS_2                3                 18
  CLUS_3               10                 50

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       25     13     10      9
  17P LOSS WILD-TYPE    122     83    142    104
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               25                122
  CLUS_2               13                 83
  CLUS_3               10                142
  CLUS_4                9                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       12     19     26
  17P LOSS WILD-TYPE    105    152    194
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                105
  CLUS_2               19                152
  CLUS_3               26                194
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       21     22      8     11
  17P LOSS WILD-TYPE    135    161     79    109
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               21                135
  CLUS_2               22                161
  CLUS_3                8                 79
  CLUS_4               11                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18     25     19
  17P LOSS WILD-TYPE    159    159    166
D70V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                159
  CLUS_2               25                159
  CLUS_3               19                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       34      5     24
  17P LOSS WILD-TYPE    116    215    166
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               34                116
  CLUS_2                5                215
  CLUS_3               24                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        2      2      8
  17P LOSS WILD-TYPE     33     39     25
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                 33
  CLUS_2                2                 39
  CLUS_3                8                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       11      7      3      4
  17P LOSS WILD-TYPE     43     51     41     41
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                 43
  CLUS_2                7                 51
  CLUS_3                3                 41
  CLUS_4                4                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        5      6     14
  17P LOSS WILD-TYPE     59     27     90
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                 59
  CLUS_2                6                 27
  CLUS_3               14                 90
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        4     13      4
  17P LOSS WILD-TYPE     40     54     32
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                4                 40
  CLUS_2               13                 54
  CLUS_3                4                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       13      2      6
  17P LOSS WILD-TYPE     53     19     54
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 53
  CLUS_2                2                 19
  CLUS_3                6                 54

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       19      7      9      2
  17Q LOSS WILD-TYPE    128     89    143    111
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                128
  CLUS_2                7                 89
  CLUS_3                9                143
  CLUS_4                2                111
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       10      7     20
  17Q LOSS WILD-TYPE    107    164    200
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                107
  CLUS_2                7                164
  CLUS_3               20                200
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       16     12      3     10
  17Q LOSS WILD-TYPE    140    171     84    110
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                140
  CLUS_2               12                171
  CLUS_3                3                 84
  CLUS_4               10                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       12     12     17
  17Q LOSS WILD-TYPE    165    172    168
D71V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               12                165
  CLUS_2               12                172
  CLUS_3               17                168
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       23      4     15
  17Q LOSS WILD-TYPE    127    216    175
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               23                127
  CLUS_2                4                216
  CLUS_3               15                175
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        1      1      5
  17Q LOSS WILD-TYPE     34     40     28
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 40
  CLUS_3                5                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        6      2      3      3
  17Q LOSS WILD-TYPE     48     56     41     42
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                2                 56
  CLUS_3                3                 41
  CLUS_4                3                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5      4      5
  17Q LOSS WILD-TYPE     59     29     99
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 59
  CLUS_2                4                 29
  CLUS_3                5                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        2      9      1
  17Q LOSS WILD-TYPE     42     58     35
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                9                 58
  CLUS_3                1                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       10      1      1
  17Q LOSS WILD-TYPE     56     20     59
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                 56
  CLUS_2                1                 20
  CLUS_3                1                 59

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       20     15      9     15
  18P LOSS WILD-TYPE    127     81    143     98
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               20                127
  CLUS_2               15                 81
  CLUS_3                9                143
  CLUS_4               15                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        6     23     30
  18P LOSS WILD-TYPE    111    148    190
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                111
  CLUS_2               23                148
  CLUS_3               30                190
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       15     28      8     15
  18P LOSS WILD-TYPE    141    155     79    105
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                141
  CLUS_2               28                155
  CLUS_3                8                 79
  CLUS_4               15                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       27     20     19
  18P LOSS WILD-TYPE    150    164    166
D72V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               27                150
  CLUS_2               20                164
  CLUS_3               19                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       30     13     25
  18P LOSS WILD-TYPE    120    207    165
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               30                120
  CLUS_2               13                207
  CLUS_3               25                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        5      5      8
  18P LOSS WILD-TYPE     30     36     25
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                 30
  CLUS_2                5                 36
  CLUS_3                8                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        5     12      2      8
  18P LOSS WILD-TYPE     49     46     42     37
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                 49
  CLUS_2               12                 46
  CLUS_3                2                 42
  CLUS_4                8                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        4      2     21
  18P LOSS WILD-TYPE     60     31     83
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                 60
  CLUS_2                2                 31
  CLUS_3               21                 83
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        9      5      5
  18P LOSS WILD-TYPE     35     62     31
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 35
  CLUS_2                5                 62
  CLUS_3                5                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        9      1      9
  18P LOSS WILD-TYPE     57     20     51
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 57
  CLUS_2                1                 20
  CLUS_3                9                 51

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       18     11     10     15
  18Q LOSS WILD-TYPE    129     85    142     98
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               18                129
  CLUS_2               11                 85
  CLUS_3               10                142
  CLUS_4               15                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        6     20     28
  18Q LOSS WILD-TYPE    111    151    192
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                6                111
  CLUS_2               20                151
  CLUS_3               28                192
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       19     21      6     13
  18Q LOSS WILD-TYPE    137    162     81    107
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               19                137
  CLUS_2               21                162
  CLUS_3                6                 81
  CLUS_4               13                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       26     16     17
  18Q LOSS WILD-TYPE    151    168    168
D73V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               26                151
  CLUS_2               16                168
  CLUS_3               17                168
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       25     14     22
  18Q LOSS WILD-TYPE    125    206    168
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               25                125
  CLUS_2               14                206
  CLUS_3               22                168
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        4      3      6
  18Q LOSS WILD-TYPE     31     38     27
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                 31
  CLUS_2                3                 38
  CLUS_3                6                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        3     12      2      7
  18Q LOSS WILD-TYPE     51     46     42     38
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 51
  CLUS_2               12                 46
  CLUS_3                2                 42
  CLUS_4                7                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3      1     20
  18Q LOSS WILD-TYPE     61     32     84
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 61
  CLUS_2                1                 32
  CLUS_3               20                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        7      6      6
  18Q LOSS WILD-TYPE     37     61     30
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                7                 37
  CLUS_2                6                 61
  CLUS_3                6                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        6      2     11
  18Q LOSS WILD-TYPE     60     19     49
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                2                 19
  CLUS_3               11                 49

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        4      9      2      9
  19P LOSS WILD-TYPE    143     87    150    104
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                143
  CLUS_2                9                 87
  CLUS_3                2                150
  CLUS_4                9                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1     13     10
  19P LOSS WILD-TYPE    116    158    210
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                116
  CLUS_2               13                158
  CLUS_3               10                210
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        5     14      2      5
  19P LOSS WILD-TYPE    151    169     85    115
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                151
  CLUS_2               14                169
  CLUS_3                2                 85
  CLUS_4                5                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        5     14      7
  19P LOSS WILD-TYPE    172    170    178
D74V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                172
  CLUS_2               14                170
  CLUS_3                7                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       11      3     12
  19P LOSS WILD-TYPE    139    217    178
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                139
  CLUS_2                3                217
  CLUS_3               12                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        0      1      6
  19P LOSS WILD-TYPE     35     40     27
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 35
  CLUS_2                1                 40
  CLUS_3                6                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        0      7      3      2
  19P LOSS WILD-TYPE     54     51     41     43
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                7                 51
  CLUS_3                3                 41
  CLUS_4                2                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        3      1      8
  19P LOSS WILD-TYPE     61     32     96
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 61
  CLUS_2                1                 32
  CLUS_3                8                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        4      4      2
  19P LOSS WILD-TYPE     40     63     34
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 40
  CLUS_2                4                 63
  CLUS_3                2                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        7      0      3
  19P LOSS WILD-TYPE     59     21     57
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 59
  CLUS_2                0                 21
  CLUS_3                3                 57

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        7     10      2     12
  19Q LOSS WILD-TYPE    140     86    150    101
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                140
  CLUS_2               10                 86
  CLUS_3                2                150
  CLUS_4               12                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2     16     13
  19Q LOSS WILD-TYPE    115    155    207
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                115
  CLUS_2               16                155
  CLUS_3               13                207
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        7     15      4      8
  19Q LOSS WILD-TYPE    149    168     83    112
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                149
  CLUS_2               15                168
  CLUS_3                4                 83
  CLUS_4                8                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        7     18      9
  19Q LOSS WILD-TYPE    170    166    176
D75V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                170
  CLUS_2               18                166
  CLUS_3                9                176
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       13      3     18
  19Q LOSS WILD-TYPE    137    217    172
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               13                137
  CLUS_2                3                217
  CLUS_3               18                172
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      5
  19Q LOSS WILD-TYPE     34     40     28
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 40
  CLUS_3                5                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        0      6      3      4
  19Q LOSS WILD-TYPE     54     52     41     41
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                6                 52
  CLUS_3                3                 41
  CLUS_4                4                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3      1      9
  19Q LOSS WILD-TYPE     61     32     95
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 61
  CLUS_2                1                 32
  CLUS_3                9                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        4      4      3
  19Q LOSS WILD-TYPE     40     63     33
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 40
  CLUS_2                4                 63
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        7      0      4
  19Q LOSS WILD-TYPE     59     21     56
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                 59
  CLUS_2                0                 21
  CLUS_3                4                 56

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4     10      0      3
  20P LOSS WILD-TYPE    143     86    152    110
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                143
  CLUS_2               10                 86
  CLUS_3                0                152
  CLUS_4                3                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        0     11      6
  20P LOSS WILD-TYPE    117    160    214
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                117
  CLUS_2               11                160
  CLUS_3                6                214
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        2      7      7      2
  20P LOSS WILD-TYPE    154    176     80    118
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                154
  CLUS_2                7                176
  CLUS_3                7                 80
  CLUS_4                2                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4     12      2
  20P LOSS WILD-TYPE    173    172    183
D76V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                173
  CLUS_2               12                172
  CLUS_3                2                183
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       13      0      5
  20P LOSS WILD-TYPE    137    220    185
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                137
  CLUS_2                0                220
  CLUS_3                5                185
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        0      0      2
  20P LOSS WILD-TYPE     35     41     31
D76V6, multiclass
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                107 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-15-1444         TCGA-19-4065         TCGA-19-5947 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-26-6173 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-6174         TCGA-28-2501         TCGA-28-2510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5211         TCGA-28-5213 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5214         TCGA-28-5215         TCGA-28-5216 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5218         TCGA-28-5219         TCGA-28-5220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-6450         TCGA-32-1979         TCGA-32-1980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-5651         TCGA-41-6646 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-74-6573         TCGA-74-6575         TCGA-74-6577 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-74-6578         TCGA-74-6581         TCGA-74-6584 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4928 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931         TCGA-76-4935 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6283 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6285         TCGA-76-6656         TCGA-76-6657 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6661         TCGA-76-6662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-81-5911         TCGA-87-5896 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        2      2      0      0
  20P LOSS WILD-TYPE     52     56     44     45
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                2                 56
  CLUS_3                0                 44
  CLUS_4                0                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        0      1      3
  20P LOSS WILD-TYPE     64     32    101
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 64
  CLUS_2                1                 32
  CLUS_3                3                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      0      0
  20P LOSS WILD-TYPE     40     67     36
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 40
  CLUS_2                0                 67
  CLUS_3                0                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        0      0      4
  20P LOSS WILD-TYPE     66     21     56
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 66
  CLUS_2                0                 21
  CLUS_3                4                 56

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        4      8      0      3
  20Q LOSS WILD-TYPE    143     88    152    110
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                143
  CLUS_2                8                 88
  CLUS_3                0                152
  CLUS_4                3                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0     10      5
  20Q LOSS WILD-TYPE    117    161    215
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                117
  CLUS_2               10                161
  CLUS_3                5                215
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      7      4      3
  20Q LOSS WILD-TYPE    154    176     83    117
D77V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                154
  CLUS_2                7                176
  CLUS_3                4                 83
  CLUS_4                3                117
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        5      8      3
  20Q LOSS WILD-TYPE    172    176    182
D77V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                172
  CLUS_2                8                176
  CLUS_3                3                182
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       13      1      2
  20Q LOSS WILD-TYPE    137    219    188
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               13                137
  CLUS_2                1                219
  CLUS_3                2                188
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      0      2
  20Q LOSS WILD-TYPE     35     41     31
D77V6, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                107 
        TCGA-06-0650         TCGA-06-1804         TCGA-06-1806 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-5856         TCGA-06-5858         TCGA-06-5859 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-6388         TCGA-06-6389         TCGA-06-6390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-6391         TCGA-06-6693         TCGA-06-6694 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-6695         TCGA-06-6697         TCGA-06-6698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-6699         TCGA-06-6700         TCGA-06-6701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-5295         TCGA-12-5299         TCGA-12-5301 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0862 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1450 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-15-1444         TCGA-19-4065         TCGA-19-5947 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1442         TCGA-26-5132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5135 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-5136         TCGA-26-5139         TCGA-26-6173 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-6174         TCGA-28-2501         TCGA-28-2510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5209         TCGA-28-5211         TCGA-28-5213 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5214         TCGA-28-5215         TCGA-28-5216 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5218         TCGA-28-5219         TCGA-28-5220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-6450         TCGA-32-1979         TCGA-32-1980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-5651         TCGA-41-6646 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-74-6573         TCGA-74-6575         TCGA-74-6577 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-74-6578         TCGA-74-6581         TCGA-74-6584 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4925         TCGA-76-4926         TCGA-76-4928 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4929         TCGA-76-4931         TCGA-76-4934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4935         TCGA-76-6191         TCGA-76-6192 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6193         TCGA-76-6280         TCGA-76-6282 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6283         TCGA-76-6656         TCGA-76-6657 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6660         TCGA-76-6661         TCGA-76-6662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6663         TCGA-76-6664         TCGA-81-5910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-81-5911         TCGA-87-5896 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      2      0      0
  20Q LOSS WILD-TYPE     52     56     44     45
D77V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                2                 56
  CLUS_3                0                 44
  CLUS_4                0                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      1      3
  20Q LOSS WILD-TYPE     64     32    101
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 64
  CLUS_2                1                 32
  CLUS_3                3                101
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        3      0      0
  20Q LOSS WILD-TYPE     41     67     36
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 41
  CLUS_2                0                 67
  CLUS_3                0                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      0      3
  20Q LOSS WILD-TYPE     66     21     57
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 66
  CLUS_2                0                 21
  CLUS_3                3                 57

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        4     12     10     10
  21Q LOSS WILD-TYPE    143     84    142    103
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                143
  CLUS_2               12                 84
  CLUS_3               10                142
  CLUS_4               10                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        7     19     10
  21Q LOSS WILD-TYPE    110    152    210
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                110
  CLUS_2               19                152
  CLUS_3               10                210
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        6     20      8      5
  21Q LOSS WILD-TYPE    150    163     79    115
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                150
  CLUS_2               20                163
  CLUS_3                8                 79
  CLUS_4                5                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       13     17      9
  21Q LOSS WILD-TYPE    164    167    176
D78V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                164
  CLUS_2               17                167
  CLUS_3                9                176
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       22      6     12
  21Q LOSS WILD-TYPE    128    214    178
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               22                128
  CLUS_2                6                214
  CLUS_3               12                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        0      3      4
  21Q LOSS WILD-TYPE     35     38     29
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                0                 35
  CLUS_2                3                 38
  CLUS_3                4                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        0      4      6      1
  21Q LOSS WILD-TYPE     54     54     38     44
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                4                 54
  CLUS_3                6                 38
  CLUS_4                1                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        6      0      5
  21Q LOSS WILD-TYPE     58     33     99
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 58
  CLUS_2                0                 33
  CLUS_3                5                 99
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        2      4      3
  21Q LOSS WILD-TYPE     42     63     33
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                 42
  CLUS_2                4                 63
  CLUS_3                3                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      3      3
  21Q LOSS WILD-TYPE     63     18     57
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                3                 18
  CLUS_3                3                 57

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       51     32     45     32
  22Q LOSS WILD-TYPE     96     64    107     81
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               51                 96
  CLUS_2               32                 64
  CLUS_3               45                107
  CLUS_4               32                 81
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       39     46     75
  22Q LOSS WILD-TYPE     78    125    145
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               39                 78
  CLUS_2               46                125
  CLUS_3               75                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       52     64     20     37
  22Q LOSS WILD-TYPE    104    119     67     83
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               52                104
  CLUS_2               64                119
  CLUS_3               20                 67
  CLUS_4               37                 83
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       55     52     66
  22Q LOSS WILD-TYPE    122    132    119
D79V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               55                122
  CLUS_2               52                132
  CLUS_3               66                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       68     49     56
  22Q LOSS WILD-TYPE     82    171    134
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               68                 82
  CLUS_2               49                171
  CLUS_3               56                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       13     16      6
  22Q LOSS WILD-TYPE     22     25     27
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               13                 22
  CLUS_2               16                 25
  CLUS_3                6                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       16     21     15     15
  22Q LOSS WILD-TYPE     38     37     29     30
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               16                 38
  CLUS_2               21                 37
  CLUS_3               15                 29
  CLUS_4               15                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       19     13     35
  22Q LOSS WILD-TYPE     45     20     69
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               19                 45
  CLUS_2               13                 20
  CLUS_3               35                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       14     22     18
  22Q LOSS WILD-TYPE     30     45     18
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               14                 30
  CLUS_2               22                 45
  CLUS_3               18                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       26      6     22
  22Q LOSS WILD-TYPE     40     15     38
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               26                 40
  CLUS_2                6                 15
  CLUS_3               22                 38

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       19     29     27     21
  XQ LOSS WILD-TYPE    128     67    125     92
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              19               128
  CLUS_2              29                67
  CLUS_3              27               125
  CLUS_4              21                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       19     41     36
  XQ LOSS WILD-TYPE     98    130    184
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              19                98
  CLUS_2              41               130
  CLUS_3              36               184
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       24     43     16     18
  XQ LOSS WILD-TYPE    132    140     71    102
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              24               132
  CLUS_2              43               140
  CLUS_3              16                71
  CLUS_4              18               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       38     34     29
  XQ LOSS WILD-TYPE    139    150    156
D80V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              38               139
  CLUS_2              34               150
  CLUS_3              29               156
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       52     28     22
  XQ LOSS WILD-TYPE     98    192    168
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              52                98
  CLUS_2              28               192
  CLUS_3              22               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3     10     11
  XQ LOSS WILD-TYPE     32     31     22
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                32
  CLUS_2              10                31
  CLUS_3              11                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       12     13     10     11
  XQ LOSS WILD-TYPE     42     45     34     34
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                42
  CLUS_2              13                45
  CLUS_3              10                34
  CLUS_4              11                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       13      7     26
  XQ LOSS WILD-TYPE     51     26     78
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              13                51
  CLUS_2               7                26
  CLUS_3              26                78
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       14     14      8
  XQ LOSS WILD-TYPE     30     53     28
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              14                30
  CLUS_2              14                53
  CLUS_3               8                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       14      6     16
  XQ LOSS WILD-TYPE     52     15     44
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              14                52
  CLUS_2               6                15
  CLUS_3              16                44
> q(save="no")
