
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/6158601/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/6154476/HNSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/6154476/HNSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/6158601/transformed.cor.cli.txt"

nPatients in clinical file=379, in cluster file=452, common to both=373
[1]  80 373
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               47               326 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               47               326 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               86               287 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               86               287 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               71               302 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               71               302 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               56               317 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               56               317 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               62               311 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               62               311 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              190               183 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              190               183 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               31               342 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               31               342 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               26               347 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               26               347 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              144               229 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              144               229 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               52               321 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               52               321 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               54               319 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               54               319 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               41               332 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               41               332 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              138               235 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              138               235 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               96               277 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               96               277 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              104               269 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              104               269 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              220               153 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              220               153 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               71               302 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               71               302 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               94               279 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               94               279 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                26                347 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                26                347 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                24                349 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                24                349 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                45                328 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                45                328 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                50                323 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                50                323 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               107                266 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               107                266 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                65                308 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                65                308 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                45                328 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                45                328 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               108                265 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               108                265 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                61                312 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                61                312 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                76                297 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                76                297 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                82                291 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                82                291 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                49                324 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                49                324 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                62                311 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                62                311 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                84                289 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                84                289 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                34                339 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                34                339 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                35                338 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                35                338 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                51                322 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                51                322 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               134                239 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               134                239 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               144                229 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               144                229 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                25                348 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                25                348 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                82                291 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                82                291 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               64               309 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               64               309 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               41               332 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               41               332 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               27               346 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               27               346 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               349 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               349 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               32               341 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               32               341 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              218               155 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              218               155 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               49               324 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               49               324 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              146               227 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              146               227 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              112               261 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              112               261 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               35               338 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               35               338 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              118               255 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              118               255 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51               322 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51               322 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               50               323 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               50               323 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               17               356 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               17               356 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               32               341 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               32               341 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              140               233 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              140               233 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               22               351 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               22               351 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              131               242 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              131               242 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               60               313 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               60               313 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               115                258 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               115                258 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                80                293 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                80                293 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               100                273 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               100                273 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               120                253 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               120                253 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                26                347 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                26                347 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                22                351 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                22                351 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               120                253 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               120                253 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                36                337 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                36                337 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                66                307 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                66                307 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                45                328 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                45                328 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                55                318 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                55                318 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                83                290 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                83                290 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                28                345 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                28                345 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                78                295 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                78                295 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               159                214 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               159                214 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                74                299 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                74                299 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                62                311 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                62                311 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                40                333 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                40                333 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                348 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                348 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               136                237 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               136                237 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                56                317 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                56                317 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               61               312 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               61               312 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 373 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415           NA          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         722         1287         1761          520          725          623 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          189          644          450           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
         395          113          236          895          512          351 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
         216           NA          181           NA          186         2891 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
         275          140          133          557          310          535 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
         422          687          638         1152          427          436 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
        2161          624            5            4          192          721 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
         485          142          194          613          156          462 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
         693          642          642          395          541          436 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
        1055          810         1085          397          488          512 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
         261          377         1081          252          493          351 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
         360          352          380           NA          683          274 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
         448          424          371          433          315          433 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
          45          391           97          276          201          424 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
         224           42          177           83          119           NA 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V 
         114          100           46          447          525          483 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
         175          367         1465         1207          654           NA 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        1659         1422          896         1399          317          341 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
         128          870           NA         1000         1057          984 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
          NA           NA           NA          814         1461         1377 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
        1006          508         1308          900         2562          358 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
        1662         1152          798         1777         1521           NA 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
        1050         1125           NA          514           NA          362 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
         311          345          354          233          379          350 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
         479           NA         1435         1190         1440         1244 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
          NA          104           NA          759          889           30 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
         972           NA         1036           NA          796           NA 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
         997         1430           NA          392          907          913 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
         946          908          898          929          216          156 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
         180         1077          910         1471         4240          522 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
        3930         3295         1438          584          546         3270 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
        2885         2326         2783         2437          519          406 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
         701         2641         1478         1840          215         1315 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
        1246          640         1899           NA           NA           NA 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
          NA         3835           NA           NA           NA           NA 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
          NA           NA           NA           NA           NA         3836 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
        3380           NA           NA           NA           NA           NA 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
        3496         1724           NA         1444         1095          953 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
         797           NA           NA           NA           NA           NA 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
          NA           NA         1099           NA           NA           NA 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
          NA           NA         4334           NA           NA           NA 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
          NA          750          316          321          236          828 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
          NA          773          292          700           77          490 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
         153          567          105          127          112          104 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        1777         1081          516         1030          548           NA 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
         575          775          621          299          369          368 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
         324          340          564          490           13           15 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
          92          584            3          384           14           13 
TCGA-F7-A622 TCGA-F7-A623 TCGA-F7-A624 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
          NA            6           NA          407           57          132 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 
           2            5           25           NA           NA           31 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
          55           44           30           30           NA           49 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
          28         1057          485          122          441          587 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
         360          411          440           NA          351          360 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
         223           14           34          392           56          111 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
         111          253          910           NA         1652          721 
TCGA-P3-A5QF 
          NA 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=133,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=243,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=91,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=79,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=23,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "NUMBERPACKYEARSSMOKED"                 
[10] "YEAROFTOBACCOSMOKINGONSET"             
[11] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 373 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 37  95  76 118 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 37  95  76 118 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 37  95  76 118 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 37  95  76 118 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
125  45 117   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
125  45 117   5 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
125  45 117   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
125  45 117   5 
PATHOLOGY.M.STAGE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=79, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=55, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=25, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    25  22
  1P GAIN WILD-TYPE 205 116
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               47               321 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               22               116 
$`1P GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-8596 
        8.15        17.10        14.79        12.99         3.72        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4727 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-6020 
       20.52         0.16         6.38        34.68        12.39         3.19 
TCGA-CN-6989 TCGA-CQ-7067 TCGA-CR-6478 TCGA-CR-6482 TCGA-CR-7379 TCGA-CR-7388 
        5.82        16.70         6.02        11.34        34.06        27.02 
TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6933 
       17.16        76.47        80.12        86.83        60.49        90.08 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7235 
        9.70        20.52       111.12        18.81         1.84        56.68 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-A6JE 
        2.10        18.41        22.85         0.07        34.09        24.66 
TCGA-CX-7082 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7596 TCGA-F7-8298 
       10.39        35.54        16.96        14.04        11.18        16.11 
TCGA-H7-7774 TCGA-IQ-A61K TCGA-IQ-A61O TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       13.38         5.29        11.84        29.92        15.75 

$`1P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
        6.21        21.17         2.07         7.76        29.42        16.83 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.65         5.95         7.82         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        14.33        26.63        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.04        16.83         8.58        35.54         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
       14.24         1.48        12.85         9.07         6.61        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        7.36         1.38         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.29         1.51        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       43.00        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       18.51        16.90        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 
        5.92        35.41        29.92        48.36       139.40       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.85 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       91.50        17.06        13.35        23.05        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       43.23        40.96        21.04        62.43         9.57         2.14 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 
        2.50         4.14        64.80       126.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        9.01         5.23        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       10.75       114.94         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97        36.13        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7423 
       89.33         9.67         0.46        25.02        25.94       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99         5.98        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.01         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       33.86        18.02        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G 
       12.13        12.10        10.65        18.54         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.20         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.20         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 
        1.02         1.81         1.45         0.99         0.99         1.61 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.92        34.75        15.95         4.01        14.50        19.30 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A51W 
       11.84        13.51        14.47        11.54         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.65         8.32 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.07              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           111.12            210.94 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            16.70             15.19 
[1] "0.1 - 111.1 (16.7)" "0.1 - 210.9 (15.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D1V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1P GAIN MUTATED         3        4         5        25         0
  1P GAIN WILD-TYPE      21       54        54       149         6
D1V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED     3   9  11  14
  1P GAIN WILD-TYPE  34  86  65 104
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               3                34
  T2               9                86
  T3              11                65
  T4              14               104
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED    10   7  17   0
  1P GAIN WILD-TYPE 115  38 100   5
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              10               115
  N1               7                38
  N2              17               100
  N3               0                 5
D1V6, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    6  5
  1P GAIN WILD-TYPE 83 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6    5
  1P GAIN WILD-TYPE   83   23
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0               6                83
  MX               5                23
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    16  31
  1P GAIN WILD-TYPE  91 235
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     16   31
  1P GAIN WILD-TYPE   91  235
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              16                91
  MALE                31               235
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                      45
  1P GAIN WILD-TYPE                                   323
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1P GAIN MUTATED                                                             1
  1P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1P GAIN MUTATED                                                     1
  1P GAIN WILD-TYPE                                                   3
D1V8, multiclass
                                                             clus
vv                                                            1P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    45
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            1P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     323
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D1V9, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    10  37
  1P GAIN WILD-TYPE  64 262
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     10   37
  1P GAIN WILD-TYPE   64  262
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO               10                64
  YES              37               262
D1V10, continuous
D1V11, continuous
D1V12, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    49  36
  1Q GAIN WILD-TYPE 181 102
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               85               283 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               36               102 
$`1Q GAIN MUTATED`
TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 
       17.10        14.79         2.07        12.99         7.76         9.04 
TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4727 
        4.37        37.87        14.04        71.05        20.52         6.38 
TCGA-CN-4728 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6010 
       20.15        34.68        12.39        11.57         9.01        14.73 
TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6023 TCGA-CN-6997 TCGA-CN-A63U TCGA-CQ-7064 
       14.24         3.19        13.94         3.29        17.26        45.27 
TCGA-CQ-7067 TCGA-CR-6478 TCGA-CR-6482 TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7388 
       16.70         6.02        11.34         3.42        34.06        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 
       12.89        29.82       139.40        17.16       108.33       107.51 
TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6933 
       76.47        80.12        60.49         7.07        43.23        90.08 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6951 
        9.70         5.46        20.52        26.43        11.24        30.05 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 
        4.14       111.12        18.81         5.23         1.84        71.21 
TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       56.68        31.33        95.34        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       18.41        35.54        17.82         0.07        34.09       100.54 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6827 
       16.60        21.99        24.66        10.39         7.76        18.64 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7596 TCGA-F7-8298 TCGA-H7-7774 
       35.54        16.96        18.90        11.18        16.11        13.38 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HL-7533 TCGA-IQ-A61H TCGA-IQ-A61O TCGA-P3-A5Q5 
        0.82         1.02        34.75        13.51        11.84        29.92 
TCGA-P3-A5Q6 
       15.75 

$`1Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        42.31        57.90        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 
       57.44         6.21        21.17         3.72        29.42        16.83 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.65         5.95         7.82         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
       95.05         4.60        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       22.59        20.98        14.33         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       23.70        15.95         4.67         5.13        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 
       21.11        21.11        12.99        17.79        14.33        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       35.67        13.05        16.04        16.83         8.58        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       22.45        13.94        12.20        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       12.85         9.07         6.61         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B 
        2.73         3.91         3.68         3.75         1.51        14.70 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        43.00        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 
       36.99        18.51        16.90        11.90        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       17.13        32.78        47.01        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       29.92        48.36       129.21        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       94.85        91.50        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       48.59        40.96        21.04        62.43         9.57         2.14 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
        4.70        21.86       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 
        8.38        28.31         2.50        64.80       126.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 
        7.99         9.01        52.31        12.89        21.76        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
      114.94         4.73        47.47        36.00        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 
       17.10         4.96        11.87        57.47       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7424 
        9.67         0.46        22.85        25.02        25.94        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CX-7085 
       19.73         7.13       142.49         6.38         5.98        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11         5.03         3.45         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       58.42        33.86        18.02        14.04        25.48        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 
        9.83        12.13        12.10        10.65        18.54         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.20         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.20         1.87         4.34         0.07         0.16 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61J 
       15.95         4.01        14.50        19.30        11.84        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
        5.29        11.54         7.33         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5QA TCGA-P3-A5QE 
        1.84         3.65         3.65         8.32        54.31        23.70 
TCGA-P3-A5QF 
       10.85 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.07              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           139.40            210.94 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            17.10             14.96 
[1] "0.1 - 139.4 (17.1)" "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1Q GAIN MUTATED         4       12        10        44         2
  1Q GAIN WILD-TYPE      20       46        49       130         4
D2V3, multiclass
                   vv
clus                T1 T2 T3 T4
  1Q GAIN MUTATED    4 23 15 30
  1Q GAIN WILD-TYPE 33 72 61 88
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1               4                33
  T2              23                72
  T3              15                61
  T4              30                88
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED    18  10  31   2
  1Q GAIN WILD-TYPE 107  35  86   3
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0              18               107
  N1              10                35
  N2              31                86
  N3               2                 3
D2V6, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED   10  7
  1Q GAIN WILD-TYPE 79 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     10    7
  1Q GAIN WILD-TYPE   79   21
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              10                79
  MX               7                21
D2V7, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    23  63
  1Q GAIN WILD-TYPE  84 203
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     23   63
  1Q GAIN WILD-TYPE   84  203
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              23                84
  MALE                63               203
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                      84
  1Q GAIN WILD-TYPE                                   284
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1Q GAIN MUTATED                                                             1
  1Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1Q GAIN MUTATED                                                     1
  1Q GAIN WILD-TYPE                                                   3
D2V8, multiclass
                                                             clus
vv                                                            1Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    84
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            1Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     284
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D2V9, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    20  66
  1Q GAIN WILD-TYPE  54 233
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     20   66
  1Q GAIN WILD-TYPE   54  233
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               20                54
  YES              66               233
D2V10, continuous
D2V11, continuous
D2V12, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    43  28
  2P GAIN WILD-TYPE 187 110
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               71               297 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               28               110 
$`2P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-A4IF TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4742 
        9.30        17.10        29.42        71.05         6.38        13.05 
TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6023 
       16.83        12.39         9.01        14.73        12.20        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CQ-5329 TCGA-CQ-5332 
        1.38         5.82         3.91         3.68        46.75        10.42 
TCGA-CQ-6225 TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7380 
       13.25        11.77        16.90        39.12        24.95        19.92 
TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 
       17.13        29.82         5.13         5.92       139.40       107.51 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 
       90.08        20.52        21.86        26.43        11.24        15.06 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7235 
        4.14       126.12       111.12        52.31        71.21        56.68 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7254 
       36.00        31.33        26.20        18.97        95.34        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       36.13        18.41        17.82         0.07        34.09       100.54 
TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 
        3.48       142.49        16.60         7.76        27.22        25.41 
TCGA-D6-6823 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7592 
       23.01         4.18         3.42        16.96        18.90         9.83 
TCGA-F7-A620 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-IQ-A61H 
        0.43         1.61         0.92        19.30        13.51 

$`2P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.21        21.17        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       37.87        14.04        14.33        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        23.70        15.95         4.67        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        22.78        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5358 
       14.33        34.68        26.63        35.67        16.04         8.58 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       12.49         8.52        22.45        13.94        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        7.36         2.73         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       17.26        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 
       21.50         2.93        54.54        29.46        45.99        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       16.70        43.00        29.59        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.51         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.34        40.90        35.84         3.42         3.06        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7385 
        0.99        31.96         9.17        34.06        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.85        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       23.05        86.83        48.59        60.49         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       40.96        21.04        62.43         9.57         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
        5.46         4.70       126.08        19.79        12.03        42.35 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7097 
        8.38        28.31         2.50        64.80        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23         1.84        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7248 TCGA-CV-7252 
       10.75       114.94         4.73        47.47        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       11.87         2.10        57.47        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7424 
        9.67         0.46        22.85        25.02        25.94        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
        7.13         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.55        13.25         9.60         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 
       18.64         3.45         3.68        58.42        35.54        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       18.02        14.04        25.48        20.42        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 
        3.02        19.20         0.10        12.62         0.46         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K 
       15.95         4.01        14.50        11.84        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.54        11.84         7.33         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
        1.84         3.65         3.65         8.32        29.92        15.75 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           142.49            210.94 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            17.13             14.86 
[1] "0.1 - 142.5 (17.1)" "0.1 - 210.9 (14.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2P GAIN MUTATED         4       13        13        33         2
  2P GAIN WILD-TYPE      20       45        46       141         4
D3V3, multiclass
                   vv
clus                T1 T2 T3 T4
  2P GAIN MUTATED    4 17 18 26
  2P GAIN WILD-TYPE 33 78 58 92
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               4                33
  T2              17                78
  T3              18                58
  T4              26                92
                   vv
clus                N0 N1 N2 N3
  2P GAIN MUTATED   31  7 19  1
  2P GAIN WILD-TYPE 94 38 98  4
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              31                94
  N1               7                38
  N2              19                98
  N3               1                 4
D3V6, binary
                   cls
clus                 0  1
  2P GAIN MUTATED   13  6
  2P GAIN WILD-TYPE 76 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     13    6
  2P GAIN WILD-TYPE   76   22
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              13                76
  MX               6                22
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    14  57
  2P GAIN WILD-TYPE  93 209
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     14   57
  2P GAIN WILD-TYPE   93  209
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              14                93
  MALE                57               209
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                      71
  2P GAIN WILD-TYPE                                   297
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2P GAIN MUTATED                                                             0
  2P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2P GAIN MUTATED                                                     0
  2P GAIN WILD-TYPE                                                   4
D3V8, multiclass
                                                             clus
vv                                                            2P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    71
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     297
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D3V9, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    13  58
  2P GAIN WILD-TYPE  61 241
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     13   58
  2P GAIN WILD-TYPE   61  241
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO               13                61
  YES              58               241
D3V10, continuous
D3V11, continuous
D3V12, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    33  23
  2Q GAIN WILD-TYPE 197 115
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               56               312 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               23               115 
$`2Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-A4IF TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4742 TCGA-CN-5356 
        9.30        29.42        71.05         6.38        13.05        16.83 
TCGA-CN-5359 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5332 
       12.39         9.01        12.20         3.91        46.75        10.42 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-7365 
       32.35        13.25        14.96        11.77        16.90        39.12 
TCGA-CR-7383 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       17.13        29.82       139.40       129.21       108.33       107.51 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7103 
       26.43        11.24        15.06         4.14       111.12        52.31 
TCGA-CV-7235 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7254 
       56.68        36.00        26.20        18.97        95.34        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7429 
       36.13        18.41         0.07        34.09       100.54         3.48 
TCGA-CV-7435 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 TCGA-D6-8569 TCGA-D6-A4ZB 
      142.49         7.76        27.22        23.01         4.18         3.42 
TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-HD-A6I0 TCGA-IQ-A61E 
       16.96        14.04        18.90         9.83         0.92        19.30 
TCGA-IQ-A61H TCGA-MT-A67D 
       13.51         1.84 

$`2Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         6.21        21.17        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        16.83        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z 
       20.98        37.87        14.04        14.33        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
        0.13         6.31        23.70        15.95         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        15.19        22.78        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 
       17.79        14.33        34.68        26.63        35.67        16.04 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        8.58        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52        22.45        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61        13.94         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        2.73         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       17.26        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 
       21.50         2.93        54.54        29.46        45.99        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6227 
        4.21        28.60        32.35        32.88        34.75         4.21 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 
       50.01        39.52        34.52        36.99        18.51         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        47.18        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
       31.96         9.17        34.06        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       29.92        48.36        17.16        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.85        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       23.05        86.83        48.59        60.49         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        21.04        62.43         9.57        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 
        9.70         5.46        20.52         4.70        21.86       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23         1.84        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7252 
      114.94         4.73        47.47        31.33        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       11.87         2.10        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 
       14.86        56.48       156.49        54.90        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
       19.73         7.13        16.60         6.38        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       24.66        10.39        10.55        13.25        25.41         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 
        2.53        16.11         5.03        18.64         3.45         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 
       58.42        35.54        33.86        18.02        25.48        20.42 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.99         1.61        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       14.50        11.84        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46         1.12        12.89         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.07              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           142.49            210.94 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            17.77             15.01 
[1] "0.1 - 142.5 (17.8)" "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2Q GAIN MUTATED         2       10        11        26         0
  2Q GAIN WILD-TYPE      22       48        48       148         6
D4V3, multiclass
                   vv
clus                T1 T2 T3 T4
  2Q GAIN MUTATED    3 14 13 19
  2Q GAIN WILD-TYPE 34 81 63 99
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               3                34
  T2              14                81
  T3              13                63
  T4              19                99
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    26   4  14   0
  2Q GAIN WILD-TYPE  99  41 103   5
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              26                99
  N1               4                41
  N2              14               103
  N3               0                 5
D4V6, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED   10  5
  2Q GAIN WILD-TYPE 79 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     10    5
  2Q GAIN WILD-TYPE   79   23
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              10                79
  MX               5                23
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    12  44
  2Q GAIN WILD-TYPE  95 222
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     12   44
  2Q GAIN WILD-TYPE   95  222
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              12                95
  MALE                44               222
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                      56
  2Q GAIN WILD-TYPE                                   312
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2Q GAIN MUTATED                                                             0
  2Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2Q GAIN MUTATED                                                     0
  2Q GAIN WILD-TYPE                                                   4
D4V8, multiclass
                                                             clus
vv                                                            2Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    56
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     312
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D4V9, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    12  44
  2Q GAIN WILD-TYPE  62 255
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     12   44
  2Q GAIN WILD-TYPE   62  255
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO               12                62
  YES              44               255
D4V10, continuous
D4V11, continuous
D4V12, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    41  21
  3P GAIN WILD-TYPE 189 117
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               62               306 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               21               117 
$`3P GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       37.28         9.07        57.90        20.48        57.44         6.21 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DD TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7864 
        3.72        29.42         5.65        95.05         4.60        22.59 
TCGA-CN-4723 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6021 
       23.70        15.19        22.78        14.24         3.19         9.07 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CQ-5323 TCGA-CQ-6223 TCGA-CQ-6225 
       13.94         1.38         3.91        48.16        34.75        13.25 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       58.42        50.01        18.51        11.64         7.66        12.46 
TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7397 TCGA-CV-5431 TCGA-CV-5442 
       15.75        39.12        40.90         7.10        17.16        76.47 
TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-7097 TCGA-CV-7103 
       60.49        21.04        21.86        26.43        12.66        52.31 
TCGA-CV-7178 TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 
       71.21         4.73        31.33        36.13        35.54        17.82 
TCGA-CV-7421 TCGA-CV-7437 TCGA-DQ-5624 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8489 
        0.07        16.60        58.42        10.65        11.18         0.43 
TCGA-F7-A623 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-IQ-A61E TCGA-MT-A67G 
        0.20         1.02         1.45         0.99        19.30         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q6 
        8.32        15.75 

$`3P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         8.15        23.74        42.31 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       17.10        23.84        53.75        21.17        14.79         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE 
       12.99         7.76        16.83        11.54         7.10         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.82         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       17.59        13.87        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4725 
       71.05        20.52         0.16         0.13         6.31        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 TCGA-CN-4735 
        4.67         6.38        20.15         5.13        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99        17.79        14.33        34.68        26.63        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05        16.04        16.83         8.58        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        22.45         9.01        14.73        13.94        12.20 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 
       10.36        14.24         1.48        12.85         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5324 
       14.70        17.26        15.88         5.75        12.07        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       54.64        37.87        26.24        39.52        34.52        36.99 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6491 
       16.90         6.02        11.90        10.22        11.34        11.51 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
        9.27        47.18        47.34        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      139.40       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
      107.51        94.85        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       23.05        86.83        48.59         7.07        43.23        40.96 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       62.43         9.57        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       20.52         4.70        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12       111.12        18.81         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 
        5.23         1.84        12.89        21.76        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       56.68        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       57.47       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
        7.13       142.49         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68         3.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       33.86        18.02        14.04        18.90        25.48        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50G 
        9.83        12.13        12.10        18.54        16.11         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.20         0.10        12.62         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         0.99         1.61         0.92        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
        4.01        14.50        11.84        13.51        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.54        11.84         7.33         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        1.84         3.65        29.92        54.31        23.70        10.85 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.07              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            95.05            210.94 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           16.175            15.520 
[1] "0.1 - 95.0 (16.2)"  "0.1 - 210.9 (15.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3P GAIN MUTATED         3        9         9        29         1
  3P GAIN WILD-TYPE      21       49        50       145         5
D5V3, multiclass
                   vv
clus                T1 T2 T3 T4
  3P GAIN MUTATED    7 19  7 19
  3P GAIN WILD-TYPE 30 76 69 99
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               7                30
  T2              19                76
  T3               7                69
  T4              19                99
                   vv
clus                 N0  N1  N2  N3
  3P GAIN MUTATED    17   9  21   1
  3P GAIN WILD-TYPE 108  36  96   4
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              17               108
  N1               9                36
  N2              21                96
  N3               1                 4
D5V6, binary
                   cls
clus                 0  1
  3P GAIN MUTATED   14  5
  3P GAIN WILD-TYPE 75 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     14    5
  3P GAIN WILD-TYPE   75   23
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              14                75
  MX               5                23
D5V7, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    15  47
  3P GAIN WILD-TYPE  92 219
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     15   47
  3P GAIN WILD-TYPE   92  219
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              15                92
  MALE                47               219
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                      61
  3P GAIN WILD-TYPE                                   307
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3P GAIN MUTATED                                                             0
  3P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3P GAIN MUTATED                                                     1
  3P GAIN WILD-TYPE                                                   3
D5V8, multiclass
                                                             clus
vv                                                            3P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    61
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            3P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     307
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D5V9, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    15  47
  3P GAIN WILD-TYPE  59 252
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     15   47
  3P GAIN WILD-TYPE   59  252
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO               15                59
  YES              47               252
D5V10, continuous
D5V11, continuous
D5V12, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED   114  75
  3Q GAIN WILD-TYPE 116  63
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              189               179 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               75                63 
$`3Q GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5557 
       37.28         9.07         8.15        23.74        57.90        20.48 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         6.21        14.79        12.99         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DD TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
       29.42        16.83         5.65        95.05         4.60         4.37 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       13.87        22.59        14.04        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.16        23.70        15.95         4.67         6.38        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 
        5.13        15.19        22.78        12.99        17.79        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       26.63        35.67        13.05        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6019 
       22.45         9.01        12.20        14.24        10.36        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07        13.94         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6998 TCGA-CN-A49B TCGA-CQ-5323 TCGA-CQ-5329 TCGA-CQ-6220 
        3.91         1.51        14.70        48.16        46.75        32.35 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       34.75        13.25        14.96        45.27        33.07        16.70 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 
       29.59        84.23        37.87        58.42        50.01        18.51 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
        6.02        11.90        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       15.75        39.12        40.90        35.84         3.06        24.95 
TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7397 
        9.17        19.92        32.78        47.01        27.02         7.10 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 
       29.92        48.36       139.40        17.16       129.21        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 
       17.95       107.51        76.47        80.12        86.83        60.49 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 
       40.96        21.04        90.08         9.70         5.46        21.86 
TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6962 
       26.43        12.03        42.35        30.05        65.82         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 
       64.80       126.12       111.12        12.66         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.89        71.21        10.75         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       11.87        47.97        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
       17.82       210.94         0.46        22.85        25.02         0.07 
TCGA-CV-7424 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7086 TCGA-CX-7219 
       14.86         7.13       142.49        16.60         7.76        27.22 
TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
        4.18         3.42        58.42        33.86        18.02        18.90 
TCGA-DQ-7592 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
        9.83        10.65        11.18        16.11         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A623 TCGA-HD-7754 TCGA-HD-7917 
        3.02        19.20        12.62         0.20         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-A61E TCGA-IQ-A61G 
        1.81         1.45         0.99        34.75        19.30        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       13.51        14.47         5.29         3.65         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF 
       15.75        54.31        10.85 

$`3Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 
       15.16         9.30        13.64        42.31        17.10        23.84 
TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE 
       53.75        21.17         2.07        11.54         7.10         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        7.82         6.12         9.04        18.31        10.19        17.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4733 TCGA-CN-4735 
       20.98        37.87         0.13         6.31        21.11        21.11 
TCGA-CN-4738 TCGA-CN-5355 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-6010 TCGA-CN-6011 
       14.33        16.04        12.49         8.52        14.73        13.94 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
       14.24         1.48         6.61         2.73         3.68         3.75 
TCGA-CN-6997 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5324 
        3.29        17.26        15.88         5.75        12.07        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        54.54        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 
       11.21         4.21        28.60        32.88        32.35         4.21 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5250 
       26.76        48.03        43.00        11.77        54.64        26.24 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6481 TCGA-CR-6482 
       39.52        34.52        36.99        16.90        10.22        11.34 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7373 TCGA-CR-7374 
        9.27        47.18        47.34         3.42        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7389 TCGA-CR-7390 
       31.96        34.06        26.17        17.13        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 
       30.02        31.10        29.85        29.52        30.54         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5441 TCGA-CV-5443 
        5.92        35.41       108.33        47.28        94.85        91.50 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        23.05        48.59         7.07        43.23 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 
       62.43         9.57         2.14        20.52         4.70        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
      126.08        19.79        15.06         6.08        53.92        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7099 
        7.13         8.38        28.31         2.50        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7252 TCGA-CV-7255 
        9.01        21.76       114.94        56.68         4.96         2.10 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       89.33         9.67        25.94        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        6.38        21.99         5.98        24.66        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.01         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 
        5.03        18.64         3.45         3.68        35.54        16.96 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 
       14.04        25.48        20.42        12.13        12.10        18.54 
TCGA-F7-A61S TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.10         0.46         0.43        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 
        0.07         0.16         0.99         1.61         0.92        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
        4.01        14.50        11.54        11.84         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5QE 
        1.12        12.89         1.84         3.65        23.70 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           210.94            156.49 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             16.6              14.5 
[1] "0.1 - 210.9 (16.6)" "0.1 - 156.5 (14.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3Q GAIN MUTATED        10       26        29        94         5
  3Q GAIN WILD-TYPE      14       32        30        80         1
D6V3, multiclass
                   vv
clus                T1 T2 T3 T4
  3Q GAIN MUTATED   17 49 36 65
  3Q GAIN WILD-TYPE 20 46 40 53
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              17                20
  T2              49                46
  T3              36                40
  T4              65                53
                   vv
clus                N0 N1 N2 N3
  3Q GAIN MUTATED   54 25 68  4
  3Q GAIN WILD-TYPE 71 20 49  1
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              54                71
  N1              25                20
  N2              68                49
  N3               4                 1
D6V6, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED   46 13
  3Q GAIN WILD-TYPE 43 15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     46   13
  3Q GAIN WILD-TYPE   43   15
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              46                43
  MX              13                15
D6V7, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    47 143
  3Q GAIN WILD-TYPE  60 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     47  143
  3Q GAIN WILD-TYPE   60  123
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              47                60
  MALE               143               123
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                     188
  3Q GAIN WILD-TYPE                                   180
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3Q GAIN MUTATED                                                             0
  3Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3Q GAIN MUTATED                                                     2
  3Q GAIN WILD-TYPE                                                   2
D6V8, multiclass
                                                             clus
vv                                                            3Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   188
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       2
                                                             clus
vv                                                            3Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     180
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         2
D6V9, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    47 143
  3Q GAIN WILD-TYPE  27 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     47  143
  3Q GAIN WILD-TYPE   27  156
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               47                27
  YES             143               156
D6V10, continuous
D6V11, continuous
D6V12, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    20  11
  4P GAIN WILD-TYPE 210 127
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               31               337 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               11               127 
$`4P GAIN MUTATED`
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4737 
       12.99         3.72         7.76         4.60         6.38        17.79 
TCGA-CN-4740 TCGA-CQ-6224 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-7389 TCGA-CV-5430 
       26.63        32.35        29.59        11.77        12.89       139.40 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6939 TCGA-CV-6945 
       86.83        48.59        60.49        40.96        21.86        12.03 
TCGA-CV-6954 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7255 TCGA-CV-7263 
       65.82       126.12         1.84        10.75         2.10        18.41 
TCGA-CV-7416 TCGA-CV-7433 TCGA-DQ-5625 TCGA-DQ-7592 TCGA-F7-A623 TCGA-IQ-A61L 
       25.02        19.73        35.54         9.83         0.20        11.54 
TCGA-MT-A67D 
        1.84 

$`4P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         6.21        21.17        14.79         2.07 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.04        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        23.70        15.95         4.67        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       15.19        22.78        21.11        21.11        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       34.68        35.67        13.05        16.04        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.29         1.51        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        32.88        34.75        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       43.00        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        5.13         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.85        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       23.05         7.07        43.23        21.04        62.43         9.57 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 
       26.43        11.24       126.08        19.79        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       30.05         6.08        53.92        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        71.21       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 
        4.96        11.87        47.97        36.13        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
      156.49        54.90         3.48        16.27        84.49         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
      142.49        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 
        3.45         4.18         3.68         3.42        58.42        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       33.86        18.02        14.04        18.90        25.48        20.42 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       14.50        19.30        11.84        13.51        14.47         5.29 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F 
       11.84         7.33         0.46         1.12        12.89         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         8.32        29.92        15.75        54.31        23.70 
TCGA-P3-A5QF 
       10.85 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.20              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           139.40            210.94 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            17.79             15.75 
[1] "0.2 - 139.4 (17.8)" "0.1 - 210.9 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4P GAIN MUTATED         0        6         3        16         0
  4P GAIN WILD-TYPE      24       52        56       158         6
D7V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     1  10   3  11
  4P GAIN WILD-TYPE  36  85  73 107
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               1                36
  T2              10                85
  T3               3                73
  T4              11               107
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED     6   3  11   0
  4P GAIN WILD-TYPE 119  42 106   5
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               6               119
  N1               3                42
  N2              11               106
  N3               0                 5
D7V6, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    5  0
  4P GAIN WILD-TYPE 84 28
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      5    0
  4P GAIN WILD-TYPE   84   28
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0               5                84
  MX               0                28
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     9  22
  4P GAIN WILD-TYPE  98 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      9   22
  4P GAIN WILD-TYPE   98  244
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               9                98
  MALE                22               244
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                      31
  4P GAIN WILD-TYPE                                   337
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4P GAIN MUTATED                                                             0
  4P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4P GAIN MUTATED                                                     0
  4P GAIN WILD-TYPE                                                   4
D7V8, multiclass
                                                             clus
vv                                                            4P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    31
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            4P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     337
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D7V9, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     7  24
  4P GAIN WILD-TYPE  67 275
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      7   24
  4P GAIN WILD-TYPE   67  275
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                7                67
  YES              24               275
D7V10, continuous
D7V11, continuous
D7V12, continuous

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED    15  11
  4Q GAIN WILD-TYPE 215 127
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               26               342 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               11               127 
$`4Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4740 TCGA-CN-5363 TCGA-CQ-7069 
       12.99         4.60         6.38        26.63         8.28        29.59 
TCGA-CR-5247 TCGA-CR-6491 TCGA-CR-7389 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-6939 
       11.77        11.51        12.89        19.20        60.49        21.86 
TCGA-CV-6945 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7263 
       12.03       126.12         1.84        36.00        26.20        18.41 
TCGA-CV-7415 TCGA-CV-7433 TCGA-D6-6826 TCGA-DQ-5625 TCGA-F7-A623 TCGA-HD-7753 
       22.85        19.73         5.03        35.54         0.20         0.16 
TCGA-IQ-A61L TCGA-MT-A67D 
       11.54         1.84 

$`4Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         6.21        21.17        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.65         5.95         7.82         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        14.33        34.68        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
       16.04        16.83         8.58        12.39        35.54        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U 
        3.68         3.75         3.29         1.51        14.70        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       45.27        33.07        16.70        43.00        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.66        12.46        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       139.40        17.16       129.21       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       17.06        13.35        23.05        86.83        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        21.04        62.43         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 
        2.14         9.70         5.46        20.52         4.70        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
       11.24       126.08        19.79        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.82       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
      156.49        54.90         3.48        16.27        84.49         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
      142.49        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 
        9.60        23.01         2.53        16.11        18.64         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68         3.42        58.42        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O 
       19.30        11.84        13.51        14.47         5.29        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46         1.12        12.89         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.16              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           126.12            210.94 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           12.940            15.915 
[1] "0.2 - 126.1 (12.9)" "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D8V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4Q GAIN MUTATED         1        6         0        13         1
  4Q GAIN WILD-TYPE      23       52        59       161         5
D8V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     2   6   3  10
  4Q GAIN WILD-TYPE  35  89  73 108
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               2                35
  T2               6                89
  T3               3                73
  T4              10               108
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED     8   0  10   1
  4Q GAIN WILD-TYPE 117  45 107   4
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               8               117
  N1               0                45
  N2              10               107
  N3               1                 4
D8V6, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    6  0
  4Q GAIN WILD-TYPE 83 28
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      6    0
  4Q GAIN WILD-TYPE   83   28
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               6                83
  MX               0                28
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     7  19
  4Q GAIN WILD-TYPE 100 247
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      7   19
  4Q GAIN WILD-TYPE  100  247
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               7               100
  MALE                19               247
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                      26
  4Q GAIN WILD-TYPE                                   342
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4Q GAIN MUTATED                                                             0
  4Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4Q GAIN MUTATED                                                     0
  4Q GAIN WILD-TYPE                                                   4
D8V8, multiclass
                                                             clus
vv                                                            4Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    26
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            4Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     342
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D8V9, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     2  24
  4Q GAIN WILD-TYPE  72 275
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2   24
  4Q GAIN WILD-TYPE   72  275
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                2                72
  YES              24               275
D8V10, continuous
D8V11, continuous
D8V12, continuous

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    91  51
  5P GAIN WILD-TYPE 139  87
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              142               226 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               51                87 
$`5P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 
       15.16         9.30         9.07        17.10        23.84        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         6.21        21.17        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BB-4217 TCGA-BB-4223 
        7.76        29.42        16.83         7.10         6.12        95.05 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-8596 
        4.37        18.31        10.19        22.59        37.87        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       20.52         0.16        23.70         6.38         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4742 
       22.78        12.99        17.79        14.33        34.68        13.05 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6019 
       12.39         8.28        11.84        14.73        13.94        12.85 
TCGA-CN-6020 TCGA-CN-6023 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A49B 
        3.19        13.94         2.73         3.91         3.29        14.70 
TCGA-CQ-5330 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-7064 TCGA-CQ-7067 
       29.46        32.88        32.35        13.25        45.27        16.70 
TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       84.23        58.42        39.52        36.99        18.51        16.90 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.64        12.46        15.75        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7389 TCGA-CR-7392 
       35.84        34.06        19.92        17.13        12.89        31.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5439 
        5.13         5.92        48.36        17.16        47.28        17.95 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5978 
      107.51        76.47        80.12        17.06        13.35         7.07 
TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6945 
       43.23         9.57         5.46        20.52        11.24        12.03 
TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 
       65.82         7.13         8.38         2.50       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       18.81         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7409 TCGA-CV-7416 
       71.21        10.75        56.68        26.20        17.82        25.02 
TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-A6JE TCGA-CX-7086 
        0.07        14.86         3.48        16.60        24.66         7.76 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
        3.45         4.18        16.96        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7596 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A620 
       25.48         9.83        11.18        19.20         0.10         0.43 
TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 TCGA-HL-7533 
        4.34         0.16         1.02         1.81         0.99        34.75 
TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
       15.95        19.30        14.47        11.84         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5Q6 TCGA-P3-A5QA 
        1.12         1.84        15.75        54.31 

$`5P GAIN WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       13.64        37.28         8.15        23.74        42.31        57.90 
TCGA-BA-5557 TCGA-BA-6871 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       20.48         2.07        11.54         5.65         5.95         7.82 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 
        9.04         4.60        17.59        13.87        20.98        14.04 
TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
       14.33         0.13         6.31        15.95         4.67        20.15 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 
       21.11        21.11        26.63        35.67        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
        8.58        35.54        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45         9.01        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
       14.24         1.48         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V 
        5.82         3.68         3.75         1.51        17.26        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       54.54        46.75        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       28.60        32.35        34.75         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 
       48.03        33.07        43.00        29.59        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6478 TCGA-CR-6480 
       37.87        26.24        50.01        34.52         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 
       10.22        11.34         7.66        11.51         9.27        47.18 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
        9.17        26.17        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 
       30.02        29.85        29.52        30.54         7.10        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5441 
       29.92       139.40       129.21       108.33        19.20        94.85 
TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 
       91.50        23.05        86.83        48.59        60.49        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6938 
       21.04        62.43        90.08         2.14         9.70         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 
       21.86        26.43       126.08        19.79        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 
       30.05         6.08        53.92        10.98        28.31         4.14 
TCGA-CV-7089 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7183 TCGA-CV-7236 
       64.80        12.66         7.99         9.01       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.94        34.09       100.54        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
        6.38        21.99         5.98        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.01         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        5.03        18.64         3.68         3.42        58.42        35.54 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       14.04        20.42        12.13        12.10        10.65        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W 
       16.11         0.43         0.49         3.02        12.62         0.46 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8314 
        0.20        13.38         1.87         0.07         0.82         1.45 
TCGA-HD-8634 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G 
        0.99         1.61         0.92         4.01        14.50        11.84 
TCGA-IQ-A61H TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
       13.51         5.29        11.54        12.89         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        23.70        10.85 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           126.12            210.94 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           15.470            15.995 
[1] "0.1 - 126.1 (15.5)" "0.1 - 210.9 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5P GAIN MUTATED         7       17        25        68         4
  5P GAIN WILD-TYPE      17       41        34       106         2
D9V3, multiclass
                   vv
clus                T1 T2 T3 T4
  5P GAIN MUTATED   12 36 28 47
  5P GAIN WILD-TYPE 25 59 48 71
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              12                25
  T2              36                59
  T3              28                48
  T4              47                71
                   vv
clus                N0 N1 N2 N3
  5P GAIN MUTATED   39 21 47  3
  5P GAIN WILD-TYPE 86 24 70  2
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              39                86
  N1              21                24
  N2              47                70
  N3               3                 2
D9V6, binary
                   cls
clus                 0  1
  5P GAIN MUTATED   36 11
  5P GAIN WILD-TYPE 53 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     36   11
  5P GAIN WILD-TYPE   53   17
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              36                53
  MX              11                17
D9V7, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    33 111
  5P GAIN WILD-TYPE  74 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     33  111
  5P GAIN WILD-TYPE   74  155
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              33                74
  MALE               111               155
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                     142
  5P GAIN WILD-TYPE                                   226
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5P GAIN MUTATED                                                             1
  5P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5P GAIN MUTATED                                                     1
  5P GAIN WILD-TYPE                                                   3
D9V8, multiclass
                                                             clus
vv                                                            5P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   142
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            5P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     226
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D9V9, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    38 106
  5P GAIN WILD-TYPE  36 193
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     38  106
  5P GAIN WILD-TYPE   36  193
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               38                36
  YES             106               193
D9V10, continuous
D9V11, continuous
D9V12, continuous

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    33  17
  5Q GAIN WILD-TYPE 197 121
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               50               318 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               17               121 
$`5Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-A4IF 
       15.16         8.15        23.84        21.17        14.79        29.42 
TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7864 TCGA-CN-4737 TCGA-CN-4738 
       95.05         4.37        10.19        22.59        17.79        14.33 
TCGA-CN-4739 TCGA-CN-5363 TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6997 TCGA-CN-A49B 
       34.68         8.28        13.94        13.94         3.29        14.70 
TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 
       32.35        16.70        84.23        58.42        39.52        36.99 
TCGA-CR-6484 TCGA-CR-7389 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5444 
       11.64        12.89        17.16        17.95        76.47        80.12 
TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-7102 
        9.57         5.46        12.03        65.82         7.13         1.84 
TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7416 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5630 
       56.68        26.20        25.02         4.18        16.96        33.86 
TCGA-DQ-7590 TCGA-F7-A50J TCGA-F7-A61S TCGA-HD-8635 TCGA-IQ-A61O TCGA-MT-A51W 
       25.48        19.20         0.10         0.99        11.84         0.46 
TCGA-P3-A5Q6 TCGA-P3-A5QA 
       15.75        54.31 

$`5Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         9.07        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90        17.10        20.48        53.75        57.44         6.21 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA 
        2.07        12.99         3.72         7.76        16.83        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 
        7.10         5.65         5.95         7.82         6.12         9.04 
TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 
        4.60        18.31        17.59        13.87        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.04        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        23.70        15.95         4.67         6.38        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        15.19        22.78        21.11        21.11        12.99 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        35.67        13.05        16.04        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        35.54        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 
       12.49         8.52        22.45         9.01        14.73        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V 
        3.91         3.68         3.75         1.51        17.26        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.54        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.21        28.60        32.35        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       43.00        29.59        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        34.52        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       139.40       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 
       19.20       107.51        94.85        91.50        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       23.05        86.83        48.59        60.49         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        21.04        62.43        90.08         2.14         9.70 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 
      114.94         4.73        47.47        36.00        31.33        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.01         2.53        16.11         5.03        18.64         3.45 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68         3.42        58.42        35.54        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11         0.43         0.49         3.02 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        1.45         0.99         1.61         0.92        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        5.29        11.54         7.33         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         3.65         8.32        29.92        23.70        10.85 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.10              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            95.05            210.94 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            16.83             15.47 
[1] "0.1 - 95.0 (16.8)"  "0.1 - 210.9 (15.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5Q GAIN MUTATED         3        3         9        28         1
  5Q GAIN WILD-TYPE      21       55        50       146         5
D10V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED     5  11  12  16
  5Q GAIN WILD-TYPE  32  84  64 102
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               5                32
  T2              11                84
  T3              12                64
  T4              16               102
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    14   7  19   1
  5Q GAIN WILD-TYPE 111  38  98   4
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              14               111
  N1               7                38
  N2              19                98
  N3               1                 4
D10V6, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED   12  6
  5Q GAIN WILD-TYPE 77 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     12    6
  5Q GAIN WILD-TYPE   77   22
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              12                77
  MX               6                22
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    10  42
  5Q GAIN WILD-TYPE  97 224
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     10   42
  5Q GAIN WILD-TYPE   97  224
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              10                97
  MALE                42               224
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                      51
  5Q GAIN WILD-TYPE                                   317
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5Q GAIN MUTATED                                                             1
  5Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5Q GAIN MUTATED                                                     0
  5Q GAIN WILD-TYPE                                                   4
D10V8, multiclass
                                                             clus
vv                                                            5Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    51
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            5Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     317
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D10V9, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    17  35
  5Q GAIN WILD-TYPE  57 264
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     17   35
  5Q GAIN WILD-TYPE   57  264
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO               17                57
  YES              35               264
D10V10, continuous
D10V11, continuous
D10V12, continuous

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    36  17
  6P GAIN WILD-TYPE 194 121
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               53               315 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               17               121 
$`6P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4224 TCGA-BB-7870 
        9.30        17.10        14.79         3.72         9.04        37.87 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5367 TCGA-CN-6020 
        0.16        23.70        16.83         8.28        11.57         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5329 
        6.61        13.94         5.82        17.26        12.07        46.75 
TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6487 
       45.99         4.21        32.35        16.70        11.77         7.66 
TCGA-CR-7368 TCGA-CR-7389 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-5977 
       40.90        12.89        29.92       139.40        76.47        60.49 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6954 TCGA-CV-6959 TCGA-CV-7235 
       40.96        90.08        20.52        65.82         8.38        56.68 
TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7415 TCGA-CV-7440 
       31.33        95.34         2.10        35.54        22.85        21.99 
TCGA-CV-A6JE TCGA-DQ-5625 TCGA-F7-A50I TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 
       24.66        35.54         3.02         4.34         0.16         1.02 
TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A67D 
        0.92        19.30        11.54         0.46         1.84 

$`6P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF 
        6.21        21.17         2.07        12.99         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       17.59        13.87        22.59        20.98        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         0.13         6.31        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        20.15         5.13        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       35.67        13.05        16.04         8.58        12.39        35.54 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 
       14.24         1.48        12.85         9.07         7.36         1.38 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       14.70        15.88         5.75        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 
        2.93        54.54        29.46        10.42        11.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 
       26.76        48.03        45.27        33.07        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.36        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95       107.51        94.85        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        86.83        48.59         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43         9.57         2.14         9.70         5.46 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
       10.75       114.94         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        57.47        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        5.98        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.01         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S 
       18.54        16.11         0.43         0.49        19.20         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.87 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.82         1.81         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G 
        1.61        34.75        15.95         4.01        14.50        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X 
       13.51        14.47         5.29        11.84         7.33         1.12 
TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       12.89         3.65         3.65         8.32        29.92        15.75 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.16              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           139.40            210.94 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            16.70             15.75 
[1] "0.2 - 139.4 (16.7)" "0.1 - 210.9 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D11V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6P GAIN MUTATED         4        8        10        24         1
  6P GAIN WILD-TYPE      20       50        49       150         5
D11V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED     4  15  12  17
  6P GAIN WILD-TYPE  33  80  64 101
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               4                33
  T2              15                80
  T3              12                64
  T4              17               101
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    20   8  15   1
  6P GAIN WILD-TYPE 105  37 102   4
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              20               105
  N1               8                37
  N2              15               102
  N3               1                 4
D11V6, binary
                   cls
clus                 0  1
  6P GAIN MUTATED   12  5
  6P GAIN WILD-TYPE 77 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     12    5
  6P GAIN WILD-TYPE   77   23
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              12                77
  MX               5                23
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    14  40
  6P GAIN WILD-TYPE  93 226
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     14   40
  6P GAIN WILD-TYPE   93  226
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              14                93
  MALE                40               226
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                      54
  6P GAIN WILD-TYPE                                   314
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6P GAIN MUTATED                                                             0
  6P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6P GAIN MUTATED                                                     0
  6P GAIN WILD-TYPE                                                   4
D11V8, multiclass
                                                             clus
vv                                                            6P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    54
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            6P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     314
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D11V9, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     6  48
  6P GAIN WILD-TYPE  68 251
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      6   48
  6P GAIN WILD-TYPE   68  251
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                6                68
  YES              48               251
D11V10, continuous
D11V11, continuous
D11V12, continuous

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    25  15
  6Q GAIN WILD-TYPE 205 123
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               40               328 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               15               123 
$`6Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6873 TCGA-BB-7870 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-5356 
        9.30         3.72        37.87         0.16        23.70        16.83 
TCGA-CN-5363 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-A63U TCGA-CQ-5331 TCGA-CQ-5334 
        8.28         3.19         6.61        17.26        45.99         4.21 
TCGA-CQ-6220 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-7380 TCGA-CR-7389 TCGA-CV-5430 
       32.35        16.70        11.77        19.92        12.89       139.40 
TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6959 
       76.47        86.83        60.49        40.96        90.08         8.38 
TCGA-CV-6962 TCGA-CV-7255 TCGA-CV-7415 TCGA-CV-7434 TCGA-CV-7440 TCGA-CX-7219 
        4.14         2.10        22.85         7.13        21.99        27.22 
TCGA-DQ-5625 TCGA-F7-A50I TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-A6I0 TCGA-IQ-A61E 
       35.54         3.02         0.16         1.02         0.92        19.30 
TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A67D TCGA-P3-A5Q6 
       11.54         0.46         1.84        15.75 

$`6Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         6.21        21.17        14.79         2.07        12.99 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.83        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        14.04        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        22.78        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        34.68        26.63        35.67        13.05        16.04 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        8.58        12.39        35.54        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       12.85         9.07        13.94         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       14.70        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5332 
       21.50         2.93        54.54        46.75        29.46        10.42 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       11.21        28.60        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       43.00        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        5.13         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       94.85        91.50        80.12        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       48.59         7.07        43.23        21.04        62.43         9.57 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        7.13        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        84.49        19.73       142.49        16.60 
TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
        6.38         5.98        24.66        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.01         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.03        18.64         3.45         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       58.42        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J 
       11.18        18.54        16.11         0.43         0.49        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        1.87         4.34         0.07         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.99         1.61        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O 
       14.50        11.84        13.51        14.47         5.29        11.84 
TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        7.33         1.12        12.89         3.65         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        54.31        23.70        10.85 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.16              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           139.40            210.94 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           14.320            15.915 
[1] "0.2 - 139.4 (14.3)" "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6Q GAIN MUTATED         3        4        10        18         2
  6Q GAIN WILD-TYPE      21       54        49       156         4
D12V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED     3   9  10  16
  6Q GAIN WILD-TYPE  34  86  66 102
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               3                34
  T2               9                86
  T3              10                66
  T4              16               102
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    16   8  10   1
  6Q GAIN WILD-TYPE 109  37 107   4
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              16               109
  N1               8                37
  N2              10               107
  N3               1                 4
D12V6, binary
                   cls
clus                 0  1
  6Q GAIN MUTATED    8  4
  6Q GAIN WILD-TYPE 81 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      8    4
  6Q GAIN WILD-TYPE   81   24
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0               8                81
  MX               4                24
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    11  30
  6Q GAIN WILD-TYPE  96 236
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     11   30
  6Q GAIN WILD-TYPE   96  236
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              11                96
  MALE                30               236
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                      41
  6Q GAIN WILD-TYPE                                   327
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6Q GAIN MUTATED                                                             0
  6Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6Q GAIN MUTATED                                                     0
  6Q GAIN WILD-TYPE                                                   4
D12V8, multiclass
                                                             clus
vv                                                            6Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    41
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            6Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     327
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D12V9, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     3  38
  6Q GAIN WILD-TYPE  71 261
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      3   38
  6Q GAIN WILD-TYPE   71  261
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                3                71
  YES              38               261
D12V10, continuous
D12V11, continuous
D12V12, continuous

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    74  62
  7P GAIN WILD-TYPE 156  76
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              136               232 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               62                76 
$`7P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-6870 
       15.16         9.30        13.64         8.15        17.10        14.79 
TCGA-BB-4224 TCGA-BB-7863 TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
        9.04        13.87        37.87        71.05        20.52         0.16 
TCGA-CN-4722 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4738 
        6.31         5.13        15.19        22.78        17.79        14.33 
TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 
       34.68        16.83         8.58        12.39         8.28        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6020 
       11.84        11.57        13.94        12.20        14.24         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6995 
        6.61        13.94         7.36         1.38         5.82         3.68 
TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A641 TCGA-CQ-5329 TCGA-CQ-5334 
        3.29        14.70        15.88        12.07        46.75         4.21 
TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-6474 
       32.35        13.25        16.70        43.00        29.59        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6484 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       16.90         6.02        11.64        47.18        39.12        47.34 
TCGA-CR-7370 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7389 TCGA-CR-7390 
        3.42         9.17        19.92        26.17        12.89        29.82 
TCGA-CR-7398 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 
        5.13       139.40        17.16       129.21       108.33        17.95 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6935 
      107.51        76.47        80.12         7.07        90.08         9.70 
TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 
        5.46        26.43        12.03        15.06        30.05        53.92 
TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7177 
       65.82         4.14       126.12       111.12         5.23        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7245 
       71.21        10.75        56.68         4.73        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       18.97        17.10        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       35.54        17.82        25.02        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 
       56.48       142.49        16.60        21.99         7.76        27.22 
TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5625 
       25.41        23.01         5.03        18.64         4.18        35.54 
TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 
       16.96        18.02        14.04        18.90         9.83        16.11 
TCGA-F7-A50I TCGA-F7-A61S TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 
        3.02         0.10         0.07         0.16         1.02         0.99 
TCGA-HD-A633 TCGA-IQ-7631 TCGA-IQ-A61H TCGA-IQ-A61K TCGA-IQ-A61O TCGA-MT-A51W 
        1.61         4.01        13.51         5.29        11.84         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67G TCGA-P3-A5Q6 
        1.12        12.89         3.65        15.75 

$`7P GAIN WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07        23.74        42.31        57.90        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 
       20.48        53.75        57.44         6.21        21.17         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
       12.99         3.72         7.76        29.42        16.83        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.65         5.95         7.82         6.12        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
        4.60         4.37        18.31        10.19        17.59        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4725 
       20.98        14.04        14.33         0.13        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        4.67         6.38        20.15        21.11        21.11        12.99 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5364 
       26.63        35.67        13.05        16.04        35.54        16.21 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6016 
       12.49         8.52        22.45         9.01        14.73        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6992 TCGA-CN-6994 
       14.24         1.48        12.85         9.07         2.73         3.91 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 
        3.75         1.51        17.26         5.75        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        54.54        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
       11.21        28.60        32.88        34.75        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CR-5243 
       14.96        26.76        48.03        45.27        33.07        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       39.52        34.52        36.99        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7368 
        7.66        12.46        11.51        15.75         9.27        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 
       34.06        17.13        32.78        47.01        27.02        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 
       35.41        29.92        48.36        47.28        19.20        94.85 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       91.50        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       60.49        43.23        40.96        21.04        62.43         9.57 
TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        2.14        20.52         4.70        21.86        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       19.79        42.35         6.08        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       28.31         2.50        64.80        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7238 
        9.01         1.84        52.31        12.89       114.94        47.47 
TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7410 
       36.00        95.34         4.96        11.87        57.47       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        7.13         6.38         5.98        24.66        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-A4Z9 
       13.25         9.60         2.53        16.11         3.45         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
        3.42        58.42        33.86        25.48        20.42        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        11.18        18.54         0.43         0.49 
TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
       19.20        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 
        1.87         4.34         0.82         1.81         1.45         0.99 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
        0.92        34.75        15.95        14.50        19.30        11.84 
TCGA-IQ-A61J TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 
       14.47        11.54         7.33         1.84         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        54.31        23.70        10.85 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           142.49            210.94 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           15.110            16.075 
[1] "0.1 - 142.5 (15.1)" "0.1 - 210.9 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D13V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7P GAIN MUTATED         9       22        21        69         5
  7P GAIN WILD-TYPE      15       36        38       105         1
D13V3, multiclass
                   vv
clus                T1 T2 T3 T4
  7P GAIN MUTATED   11 35 31 49
  7P GAIN WILD-TYPE 26 60 45 69
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              11                26
  T2              35                60
  T3              31                45
  T4              49                69
                   vv
clus                N0 N1 N2 N3
  7P GAIN MUTATED   46 14 46  4
  7P GAIN WILD-TYPE 79 31 71  1
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              46                79
  N1              14                31
  N2              46                71
  N3               4                 1
D13V6, binary
                   cls
clus                 0  1
  7P GAIN MUTATED   29 12
  7P GAIN WILD-TYPE 60 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     29   12
  7P GAIN WILD-TYPE   60   16
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              29                60
  MX              12                16
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    39  99
  7P GAIN WILD-TYPE  68 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     39   99
  7P GAIN WILD-TYPE   68  167
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              39                68
  MALE                99               167
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                     137
  7P GAIN WILD-TYPE                                   231
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7P GAIN MUTATED                                                             1
  7P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7P GAIN MUTATED                                                     0
  7P GAIN WILD-TYPE                                                   4
D13V8, multiclass
                                                             clus
vv                                                            7P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   137
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            7P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     231
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D13V9, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    29 109
  7P GAIN WILD-TYPE  45 190
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     29  109
  7P GAIN WILD-TYPE   45  190
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               29                45
  YES             109               190
D13V10, continuous
D13V11, continuous
D13V12, continuous

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    53  42
  7Q GAIN WILD-TYPE 177  96
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               95               273 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               42                96 
$`7Q GAIN MUTATED`
TCGA-BA-6870 TCGA-BB-7863 TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       14.79        13.87        37.87        71.05        20.52         0.16 
TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5356 
        6.31         6.38         5.13        14.33        34.68        16.83 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-6012 
        8.58        35.54         8.28        11.54        11.57        12.20 
TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       14.24         3.19        13.94         7.36         1.38         5.82 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A641 TCGA-CQ-6225 
        3.68         3.29        14.70        15.88        12.07        13.25 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-6478 TCGA-CR-7370 TCGA-CR-7389 TCGA-CR-7390 
       16.70        29.59         6.02         3.42        12.89        29.82 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 
      139.40        17.16       129.21       108.33        47.28        17.95 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6941 
      107.51        76.47         7.07        90.08         9.70        11.24 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 
       12.03        15.06        30.05         4.14       126.12       111.12 
TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7247 
        5.23        21.76        71.21        56.68        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7416 
       17.10        47.97        36.13        18.41        35.54        25.02 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7086 
       34.09        14.86        56.48       142.49        16.60         7.76 
TCGA-D6-6516 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5629 
       25.41         5.03        18.64         4.18        35.54        16.96 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-A50I 
       18.02        14.04        18.90         9.83        16.11         3.02 
TCGA-F7-A61S TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-7631 TCGA-IQ-A61H TCGA-IQ-A61K 
        0.10         0.16         1.02         4.01        13.51         5.29 
TCGA-IQ-A61O TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67G TCGA-P3-A5Q6 
       11.84         0.46        12.89         3.65        15.75 

$`7Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 
       53.75        57.44         6.21        21.17         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.65         5.95         7.82         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
        4.60         4.37        18.31        10.19        17.59        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4725 
       20.98        14.04        14.33         0.13        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
        4.67        20.15        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       12.99        17.79        26.63        35.67        13.05        16.04 
TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       12.39        16.21        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01        14.73        13.94        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 
       12.85         9.07         6.61         2.73         3.91         3.75 
TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        1.51        17.26         5.75        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        43.00        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.51        16.90        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 
       26.17        17.13        32.78        47.01        27.02        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5436 TCGA-CV-5441 
        5.92        35.41        29.92        48.36        19.20        94.85 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.50        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49        43.23        40.96        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        9.57         2.14         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
       26.43       126.08        19.79        42.35         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.80        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.89        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       36.00        31.33        95.34         4.96        11.87         2.10 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7428 
       22.85        25.94         0.07       100.54       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 
        3.48        16.27        84.49        19.73         7.13         6.38 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       21.99         5.98        24.66        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 
       13.25         9.60        23.01         2.53        16.11         3.45 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 
        3.68         3.42        58.42        33.86        25.48        20.42 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        18.54         0.43 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        0.49        19.20        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 
       13.38         1.87         4.34         0.07         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61L 
       15.95        14.50        19.30        11.84        14.47        11.54 
TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        7.33         1.12         1.84         3.65         8.32        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.10              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           142.49            210.94 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            14.79             16.11 
[1] "0.1 - 142.5 (14.8)" "0.1 - 210.9 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7Q GAIN MUTATED         8       15        15        45         3
  7Q GAIN WILD-TYPE      16       43        44       129         3
D14V3, multiclass
                   vv
clus                T1 T2 T3 T4
  7Q GAIN MUTATED    9 21 23 33
  7Q GAIN WILD-TYPE 28 74 53 85
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1               9                28
  T2              21                74
  T3              23                53
  T4              33                85
                   vv
clus                N0 N1 N2 N3
  7Q GAIN MUTATED   34  8 30  3
  7Q GAIN WILD-TYPE 91 37 87  2
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              34                91
  N1               8                37
  N2              30                87
  N3               3                 2
D14V6, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED   16 10
  7Q GAIN WILD-TYPE 73 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     16   10
  7Q GAIN WILD-TYPE   73   18
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              16                73
  MX              10                18
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    28  68
  7Q GAIN WILD-TYPE  79 198
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     28   68
  7Q GAIN WILD-TYPE   79  198
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              28                79
  MALE                68               198
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                      95
  7Q GAIN WILD-TYPE                                   273
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7Q GAIN MUTATED                                                             1
  7Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7Q GAIN MUTATED                                                     0
  7Q GAIN WILD-TYPE                                                   4
D14V8, multiclass
                                                             clus
vv                                                            7Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    95
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            7Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     273
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D14V9, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    19  77
  7Q GAIN WILD-TYPE  55 222
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     19   77
  7Q GAIN WILD-TYPE   55  222
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               19                55
  YES              77               222
D14V10, continuous
D14V11, continuous
D14V12, continuous

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    68  34
  8P GAIN WILD-TYPE 162 104
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              102               266 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               34               104 
$`8P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 
        9.30        17.10        20.48        57.44         6.21         2.07 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7861 
        3.72         6.12        95.05         9.04         4.60        10.19 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       22.59        37.87        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       23.70         5.13        22.78        14.33        34.68        26.63 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6012 
       16.04        16.83        12.39        11.84        14.73        12.20 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A63U 
        6.61         7.36         3.91         3.68         1.51        17.26 
TCGA-CN-A63V TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5330 TCGA-CQ-6224 TCGA-CQ-7068 
       15.88        39.68        21.50        29.46        32.35        43.00 
TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6482 
       84.23        58.42        50.01        16.90         6.02        11.34 
TCGA-CR-6487 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7382 
        7.66        39.12        47.34         3.42        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7389 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 
       17.13        12.89        48.36       139.40        17.16        47.28 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 
      107.51        76.47        48.59        60.49        40.96        21.04 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6945 
        2.14         5.46        20.52         4.70        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7180 
       42.35        53.92       111.12        18.81        12.66        10.75 
TCGA-CV-7243 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7424 
       31.33        11.87        47.97        18.41        17.82        14.86 
TCGA-CV-7428 TCGA-CV-A6JE TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-8568 
       54.90        24.66         7.76        25.41        23.01         3.45 
TCGA-DQ-5629 TCGA-DQ-7588 TCGA-F7-7848 TCGA-F7-A61S TCGA-HD-7917 TCGA-HD-8314 
       16.96        14.04        18.54         0.10         1.02         1.45 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5QE 
       11.84         7.33         0.46         1.84         3.65        23.70 

$`8P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 
       42.31        57.90        23.84        53.75        21.17        14.79 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
       12.99         7.76        29.42        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        5.65         5.95         7.82         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 
       13.87        20.98        14.04         0.16         0.13        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 
        4.67         6.38        20.15        15.19        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5360 
       12.99        17.79        35.67        13.05         8.58        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       22.45         9.01        13.94        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
        1.48        12.85         3.19         9.07        13.94         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63Y 
        5.82         2.73         3.75         3.29        14.70         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       12.07        48.16         2.93        54.54        46.75        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       34.75        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 
       45.27        33.07        16.70        29.59        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       37.87        26.24        39.52        34.52        36.99        18.51 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.64        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
        9.27        47.18        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7385 
       29.23         0.99        31.96         9.17        19.92        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       29.92       129.21       108.33        19.20        17.95        94.85 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.50        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
        7.07        43.23        62.43         9.57        90.08         9.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6950 TCGA-CV-6951 
       21.86        26.43        11.24       126.08        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
        6.08        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 
        2.50         4.14        64.80       126.12         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7261 
       18.97        17.10        95.34         4.96         2.10        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
        7.13       142.49        16.60         6.38        21.99         5.98 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 
       10.39        10.55        27.22        13.25         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11         5.03        18.64         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       58.42        35.54        33.86        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61V 
       16.11         0.43         0.49         3.02        19.20        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.16         0.82         1.81         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       19.30        11.84        13.51        14.47         5.29        11.54 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
        1.12        12.89         3.65         8.32        29.92        15.75 
TCGA-P3-A5QA TCGA-P3-A5QF 
       54.31        10.85 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.10              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           139.40            210.94 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           17.115            14.875 
[1] "0.1 - 139.4 (17.1)" "0.1 - 210.9 (14.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8P GAIN MUTATED         7       16        17        48         2
  8P GAIN WILD-TYPE      17       42        42       126         4
D15V3, multiclass
                   vv
clus                T1 T2 T3 T4
  8P GAIN MUTATED   12 28 17 33
  8P GAIN WILD-TYPE 25 67 59 85
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              12                25
  T2              28                67
  T3              17                59
  T4              33                85
                   vv
clus                N0 N1 N2 N3
  8P GAIN MUTATED   32 14 33  2
  8P GAIN WILD-TYPE 93 31 84  3
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              32                93
  N1              14                31
  N2              33                84
  N3               2                 3
D15V6, binary
                   cls
clus                 0  1
  8P GAIN MUTATED   22  8
  8P GAIN WILD-TYPE 67 20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     22    8
  8P GAIN WILD-TYPE   67   20
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              22                67
  MX               8                20
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    21  83
  8P GAIN WILD-TYPE  86 183
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     21   83
  8P GAIN WILD-TYPE   86  183
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              21                86
  MALE                83               183
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                     100
  8P GAIN WILD-TYPE                                   268
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8P GAIN MUTATED                                                             1
  8P GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8P GAIN MUTATED                                                     3
  8P GAIN WILD-TYPE                                                   1
D15V8, multiclass
                                                             clus
vv                                                            8P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   100
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       3
                                                             clus
vv                                                            8P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     268
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         1
D15V9, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    24  80
  8P GAIN WILD-TYPE  50 219
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     24   80
  8P GAIN WILD-TYPE   50  219
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               24                50
  YES              80               219
D15V10, continuous
D15V11, continuous
D15V12, continuous

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   134  83
  8Q GAIN WILD-TYPE  96  55
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              217               151 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               83                55 
$`8Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5557 
        9.30        37.28         8.15        42.31        17.10        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75        57.44         6.21        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-4217 TCGA-BB-4223 
        3.72         7.76        11.54         5.65         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.04         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       22.59        37.87        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
        0.13         6.31        23.70        20.15         5.13        22.78 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 
       12.99        17.79        14.33        34.68        26.63        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       16.04        16.83         8.28        16.21        11.54        11.84 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6012 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 
        8.52        22.45        12.20         3.19         6.61         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
        1.38         2.73         3.91         3.68         3.75         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       14.70        17.26        15.88        39.68        21.50         2.93 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6224 TCGA-CQ-6227 
       46.75        29.46         4.21        28.60        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       14.96        26.76        33.07        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6473 TCGA-CR-6477 
       84.23        11.77        58.42        50.01        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7365 
        6.02        11.34        11.64         7.66        12.46        39.12 
TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 
       47.34        35.84         3.42        24.95        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        17.13        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 
       12.89         7.10         5.92        35.41        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 
       17.16       129.21        47.28        19.20       107.51        94.85 
TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       76.47        80.12        17.06        48.59        60.49         7.07 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       40.96        21.04        62.43         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6959 
       42.35        15.06        30.05         6.08        53.92         8.38 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
        1.84        12.89        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        31.33        26.20        18.97        17.10 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 
       11.87        47.97         2.10        18.41        35.54        17.82 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7427 
        0.46        25.02         0.07       100.54        14.86       156.49 
TCGA-CV-7428 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JE TCGA-CX-7082 
       54.90         7.13        16.60         6.38        24.66        10.39 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 
        7.76        27.22        25.41         9.60        23.01         5.03 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.45         4.18         3.68         3.42        58.42        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-7848 
       16.96        33.86        14.04        18.90         9.83        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A620 
       16.11         0.43         3.02        19.20         0.10         0.43 
TCGA-H7-8501 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.87         1.02         1.45         0.99         0.99        34.75 
TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       15.95        19.30         5.29        11.54        11.84         7.33 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
        0.46         1.12         1.84         3.65        15.75        54.31 
TCGA-P3-A5QE 
       23.70 

$`8Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 
       15.16        13.64         9.07        23.74        57.90        23.84 
TCGA-BA-6869 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BA-A6DF 
       21.17        29.42        16.83         7.10         5.95         7.82 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       17.59        20.98        14.04        15.95         4.67         6.38 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4741 TCGA-CN-5358 TCGA-CN-5359 
       15.19        21.11        21.11        35.67         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       35.54        11.57        12.49         9.01        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 
       14.24        10.36        14.24         1.48        12.85         9.07 
TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6997 TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       13.94         5.82         3.29         5.75        12.07        48.16 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6220 TCGA-CQ-6221 
       54.54        45.99        10.42        11.21        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CR-5248 TCGA-CR-5249 
       34.75        13.25        48.03        45.27        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6481 
       26.24        39.52        34.52        18.51        11.90        10.22 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7371 
       11.51        15.75         9.27        47.18        40.90         3.06 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       29.23         0.99        32.78        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5434 
       29.85        29.52        30.54         5.13        29.92       108.33 
TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5979 
       17.95        91.50        13.35        23.05        86.83        43.23 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-6954 TCGA-CV-6955 
        9.57        90.08         9.70        21.86        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
        7.13        28.31         2.50         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7261 
       52.31        21.76        36.00        95.34         4.96        36.13 
TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 
       57.47       210.94        89.33         9.67        22.85        25.94 
TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       34.09        56.48         3.48        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 
      142.49        21.99         5.98        10.55        13.25         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       16.11        18.64        18.02        25.48        20.42        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-A50G TCGA-F7-A61V TCGA-F7-A61W 
       12.10        10.65        11.18         0.49        12.62         0.46 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.20        13.38         4.34         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G 
        1.81         1.61         0.92         4.01        14.50        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-MT-A67A TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       13.51        14.47        12.89         3.65         8.32        29.92 
TCGA-P3-A5QF 
       10.85 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.07              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           156.49            210.94 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            16.21             14.50 
[1] "0.1 - 156.5 (16.2)" "0.1 - 210.9 (14.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8Q GAIN MUTATED        15       34        38       100         6
  8Q GAIN WILD-TYPE       9       24        21        74         0
D16V3, multiclass
                   vv
clus                T1 T2 T3 T4
  8Q GAIN MUTATED   24 56 46 68
  8Q GAIN WILD-TYPE 13 39 30 50
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              24                13
  T2              56                39
  T3              46                30
  T4              68                50
                   vv
clus                N0 N1 N2 N3
  8Q GAIN MUTATED   69 27 72  5
  8Q GAIN WILD-TYPE 56 18 45  0
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              69                56
  N1              27                18
  N2              72                45
  N3               5                 0
D16V6, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED   53 15
  8Q GAIN WILD-TYPE 36 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     53   15
  8Q GAIN WILD-TYPE   36   13
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              53                36
  MX              15                13
D16V7, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    65 155
  8Q GAIN WILD-TYPE  42 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     65  155
  8Q GAIN WILD-TYPE   42  111
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              65                42
  MALE               155               111
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                     216
  8Q GAIN WILD-TYPE                                   152
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8Q GAIN MUTATED                                                             1
  8Q GAIN WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8Q GAIN MUTATED                                                     3
  8Q GAIN WILD-TYPE                                                   1
D16V8, multiclass
                                                             clus
vv                                                            8Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   216
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       3
                                                             clus
vv                                                            8Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     152
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         1
D16V9, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    42 178
  8Q GAIN WILD-TYPE  32 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     42  178
  8Q GAIN WILD-TYPE   32  121
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               42                32
  YES             178               121
D16V10, continuous
D16V11, continuous
D16V12, continuous

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    46  24
  9P GAIN WILD-TYPE 184 114
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               70               298 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               24               114 
$`9P GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DA 
        8.15        23.84        20.48        57.44         3.72        11.54 
TCGA-BB-7870 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5370 TCGA-CN-6010 
       37.87        16.04        12.39         8.28         8.52        14.73 
TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5329 
       13.94        13.94         3.91         3.68         3.75        46.75 
TCGA-CQ-5330 TCGA-CQ-6223 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-6467 
       29.46        34.75        26.76        48.03        43.00        58.42 
TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7395 TCGA-CV-5431 
        7.66         3.42         3.06        29.23        30.54        17.16 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 
      107.51        94.85        76.47        17.06        60.49        21.04 
TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6962 
       62.43         4.70        21.86        11.24         6.08         4.14 
TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7254 
       64.80         7.99        56.68        47.47        18.97        47.97 
TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       36.13        35.54        17.82        56.48       156.49         3.48 
TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5625 TCGA-F7-A61S TCGA-H7-7774 
        5.98        27.22        25.41        35.54         0.10        13.38 
TCGA-H7-8502 TCGA-HD-7917 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-A61K TCGA-IQ-A61L 
        4.34         1.02         0.92        34.75         5.29        11.54 
TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        0.46        12.89         3.65         3.65 

$`9P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       42.31        57.90        17.10        53.75         6.21        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       14.79         2.07        12.99         7.76        29.42        16.83 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.65         5.95         7.82         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        22.59        20.98        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       20.52         0.16         0.13         6.31        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        20.15         5.13        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       26.63        35.67        13.05        16.83         8.58        35.54 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       16.21        11.54        11.84        11.57        12.49        22.45 
TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
       12.85         3.19         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U 
        5.82         2.73         3.29         1.51        14.70        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
        2.93        54.54        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        32.88        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 
       14.96        45.27        33.07        16.70        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       11.77        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 
       29.82        30.02        31.10        29.85        29.52         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5443 
      129.21       108.33        47.28        19.20        17.95        91.50 
TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       80.12        13.35        23.05        86.83        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96         9.57        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        5.46        20.52        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06        30.05        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 
        7.13         8.38        28.31         2.50       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       18.81        12.66         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       12.89        21.76        71.21        10.75       114.94         4.73 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 
       11.87         2.10        18.41        57.47       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 
       34.09       100.54        14.86        54.90        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 
       24.66        10.39        10.55         7.76        13.25         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.01         2.53        16.11         5.03        18.64         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68         3.42        58.42        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W 
        0.43         0.49         3.02        19.20        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.20         1.87         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99         1.61        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67D TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       11.84         7.33         1.12         1.84         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       15.75        54.31        23.70        10.85 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.10              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           156.49            210.94 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            17.11             15.47 
[1] "0.1 - 156.5 (17.1)" "0.1 - 210.9 (15.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D17V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9P GAIN MUTATED         5       16         9        34         2
  9P GAIN WILD-TYPE      19       42        50       140         4
D17V3, multiclass
                   vv
clus                T1 T2 T3 T4
  9P GAIN MUTATED    7 17 15 27
  9P GAIN WILD-TYPE 30 78 61 91
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               7                30
  T2              17                78
  T3              15                61
  T4              27                91
                   vv
clus                N0 N1 N2 N3
  9P GAIN MUTATED   27  7 21  2
  9P GAIN WILD-TYPE 98 38 96  3
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              27                98
  N1               7                38
  N2              21                96
  N3               2                 3
D17V6, binary
                   cls
clus                 0  1
  9P GAIN MUTATED   16  5
  9P GAIN WILD-TYPE 73 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     16    5
  9P GAIN WILD-TYPE   73   23
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              16                73
  MX               5                23
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    28  43
  9P GAIN WILD-TYPE  79 223
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     28   43
  9P GAIN WILD-TYPE   79  223
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              28                79
  MALE                43               223
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                      71
  9P GAIN WILD-TYPE                                   297
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9P GAIN MUTATED                                                             0
  9P GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9P GAIN MUTATED                                                     0
  9P GAIN WILD-TYPE                                                   4
D17V8, multiclass
                                                             clus
vv                                                            9P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    71
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            9P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     297
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D17V9, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    11  60
  9P GAIN WILD-TYPE  63 239
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     11   60
  9P GAIN WILD-TYPE   63  239
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO               11                63
  YES              60               239
D17V10, continuous
D17V11, continuous
D17V12, continuous

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    56  36
  9Q GAIN WILD-TYPE 174 102
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               92               276 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               36               102 
$`9Q GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6873 
        8.15        17.10        23.84        20.48        57.44         3.72 
TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-4224 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4723 
       11.54         5.65         9.04        22.59        37.87        23.70 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5363 
        6.38        20.15        35.67        16.04        12.39         8.28 
TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6994 
       11.57        14.73        13.94         9.07        13.94         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5330 TCGA-CQ-6223 
        3.68         3.75        48.16        21.50        29.46        34.75 
TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-6477 
       13.25        26.76        48.03        43.00        58.42        16.90 
TCGA-CR-7368 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7389 TCGA-CV-5431 
       40.90        29.23        34.06        19.92        12.89        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
      129.21       108.33        17.95       107.51        76.47        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6938 
       17.06        13.35        60.49        21.04        62.43         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 
       21.86        11.24         6.08         4.14        64.80         7.99 
TCGA-CV-7100 TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7261 
        9.01        56.68        47.47        26.20        18.97        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7422 TCGA-CV-7425 
       18.41        35.54        17.82        22.85        34.09        56.48 
TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-A6JD 
      156.49         3.48        16.27        84.49         7.13         5.98 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-8569 TCGA-DQ-5625 TCGA-F7-A61S TCGA-H7-7774 
       27.22        25.41         4.18        35.54         0.10        13.38 
TCGA-H7-8502 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-A6I0 TCGA-IQ-A61L TCGA-MT-A51W 
        4.34         1.02         1.45         0.92        11.54         0.46 
TCGA-MT-A67A TCGA-MT-A67G 
       12.89         3.65 

$`9Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       42.31        57.90        53.75         6.21        21.17        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB 
        2.07        12.99         7.76        29.42        16.83         7.10 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
        5.95         7.82         6.12        95.05         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 
       18.31        10.19        17.59        13.87        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13         6.31 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
       15.95         4.67         5.13        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.63 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 
       13.05        16.83         8.58        35.54        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 
       11.84        12.49         8.52        22.45         9.01        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
        6.61         7.36         1.38         5.82         2.73         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        1.51        14.70        17.26        15.88         5.75        12.07 
TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68         2.93        54.54        46.75        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       11.21         4.21        28.60        32.35        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 
        4.21        14.96        45.27        33.07        16.70        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        36.99        18.51         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        24.95         0.99        31.96         9.17 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-5973 
       47.28        19.20        94.85        91.50        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 
       48.59         7.07        43.23        40.96         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 
        2.14         9.70         5.46        20.52        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 
       19.79        12.03        42.35        15.06        30.05        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 
      126.12       111.12        18.81        12.66         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
        4.73        36.00        31.33        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 
       11.87        47.97         2.10        57.47       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 
        9.67         0.46        25.02        25.94         0.07       100.54 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       14.86        54.90        19.73       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
       21.99        24.66        10.39        10.55         7.76        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         3.68         3.42        58.42        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W 
        0.43         0.49         3.02        19.20        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.20         1.87         0.07         0.16         0.82 
TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         0.99         0.99         1.61        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67F 
        5.29        11.84         7.33         1.12         1.84         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.10              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           156.49            210.94 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           17.885            14.825 
[1] "0.1 - 156.5 (17.9)" "0.1 - 210.9 (14.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9Q GAIN MUTATED         6       16        11        52         3
  9Q GAIN WILD-TYPE      18       42        48       122         3
D18V3, multiclass
                   vv
clus                T1 T2 T3 T4
  9Q GAIN MUTATED    9 20 17 42
  9Q GAIN WILD-TYPE 28 75 59 76
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               9                28
  T2              20                75
  T3              17                59
  T4              42                76
                   vv
clus                N0 N1 N2 N3
  9Q GAIN MUTATED   36 11 30  2
  9Q GAIN WILD-TYPE 89 34 87  3
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              36                89
  N1              11                34
  N2              30                87
  N3               2                 3
D18V6, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED   17  4
  9Q GAIN WILD-TYPE 72 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     17    4
  9Q GAIN WILD-TYPE   72   24
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              17                72
  MX               4                24
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    27  67
  9Q GAIN WILD-TYPE  80 199
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     27   67
  9Q GAIN WILD-TYPE   80  199
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              27                80
  MALE                67               199
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                      93
  9Q GAIN WILD-TYPE                                   275
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9Q GAIN MUTATED                                                             0
  9Q GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9Q GAIN MUTATED                                                     1
  9Q GAIN WILD-TYPE                                                   3
D18V8, multiclass
                                                             clus
vv                                                            9Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    93
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            9Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     275
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D18V9, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    18  76
  9Q GAIN WILD-TYPE  56 223
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     18   76
  9Q GAIN WILD-TYPE   56  223
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               18                56
  YES              76               223
D18V10, continuous
D18V11, continuous
D18V12, continuous

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    20   6
  10P GAIN WILD-TYPE 210 132
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                26                342 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                132 
$`10P GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6872 TCGA-BB-7861 TCGA-CN-4727 
       23.74        17.10        21.17        12.99        10.19         6.38 
TCGA-CN-5356 TCGA-CN-6013 TCGA-CN-6994 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6488 
       16.83        14.24         3.91        16.70        11.77        12.46 
TCGA-CR-7399 TCGA-CV-5441 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-7091 
        5.92        94.85        40.96         2.14        20.52       111.12 
TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7421 TCGA-CV-7435 TCGA-DQ-7589 TCGA-F7-7848 
       95.34        47.97         0.07       142.49        18.90        18.54 
TCGA-HD-7917 TCGA-P3-A5QE 
        1.02        23.70 

$`10P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
        6.21        14.79         2.07         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       23.70        15.95         4.67        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       34.68        26.63        35.67        13.05        16.04         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
       13.94        12.20        10.36        14.24         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61        13.94         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       14.70        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 
       26.76        48.03        45.27        33.07        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 
      108.33        47.28        19.20        17.95       107.51        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.50        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
        9.57        90.08         9.70         5.46         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       26.20        18.97        17.10         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.48        16.27        84.49        19.73         7.13        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        6.38        21.99         5.98        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        25.41         9.60        23.01 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.11         5.03        18.64         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.42        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        25.48        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        11.18        16.11         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.20         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 
        0.82         1.81         1.45         0.99         0.99         1.61 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.92        34.75        15.95         4.01        14.50        19.30 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       11.84        13.51        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF 
        3.65         8.32        29.92        15.75        54.31        10.85 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.07               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            142.49             210.94 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            16.965             15.470 
[1] "0.1 - 142.5 (17.0)" "0.1 - 210.9 (15.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D19V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10P GAIN MUTATED         2        4         5        12         0
  10P GAIN WILD-TYPE      22       54        54       162         6
D19V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED     3   6   6   8
  10P GAIN WILD-TYPE  34  89  70 110
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                3                 34
  T2                6                 89
  T3                6                 70
  T4                8                110
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED    12   4   6   0
  10P GAIN WILD-TYPE 113  41 111   5
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0               12                113
  N1                4                 41
  N2                6                111
  N3                0                  5
D19V6, binary
                    cls
clus                  0  1
  10P GAIN MUTATED    2  1
  10P GAIN WILD-TYPE 87 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2    1
  10P GAIN WILD-TYPE   87   27
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0                2                 87
  MX                1                 27
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     6  20
  10P GAIN WILD-TYPE 101 246
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      6   20
  10P GAIN WILD-TYPE  101  246
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                6                101
  MALE                 20                246
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                      25
  10P GAIN WILD-TYPE                                   343
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10P GAIN MUTATED                                                             0
  10P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10P GAIN MUTATED                                                     1
  10P GAIN WILD-TYPE                                                   3
D19V8, multiclass
                                                             clus
vv                                                            10P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     25
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            10P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      343
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D19V9, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     5  21
  10P GAIN WILD-TYPE  69 278
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      5   21
  10P GAIN WILD-TYPE   69  278
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 5                 69
  YES               21                278
D19V10, continuous
D19V11, continuous
D19V12, continuous

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    17   6
  10Q GAIN WILD-TYPE 213 132
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                23                345 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                132 
$`10Q GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6872 TCGA-BA-6873 TCGA-CN-4727 TCGA-CN-6013 TCGA-CN-6023 
       23.74        12.99         3.72         6.38        14.24        13.94 
TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-7067 TCGA-CR-7390 TCGA-CR-7399 TCGA-CV-5441 
        3.91        46.75        16.70        29.82         5.92        94.85 
TCGA-CV-5966 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6937 TCGA-CV-7091 TCGA-CV-7435 
       17.06        40.96         9.57        20.52       111.12       142.49 
TCGA-D6-6825 TCGA-DQ-5629 TCGA-F7-A620 TCGA-HD-7917 TCGA-P3-A5Q6 
       16.11        16.96         0.43         1.02        15.75 

$`10Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 
       57.44         6.21        21.17        14.79         2.07         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       37.87        14.04        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
        0.13         6.31        23.70        15.95         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        15.19        22.78        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.63        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       16.04        16.83         8.58        12.39        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 
       22.45         9.01        14.73        13.94        12.20        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
        7.36         1.38         5.82         2.73         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.29         1.51        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 
       14.96        26.76        48.03        45.27        33.07        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 
      107.51        76.47        91.50        80.12        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       86.83        48.59        60.49         7.07        43.23        21.04 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 
       62.43        90.08         2.14         9.70         5.46         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13        16.60         6.38        21.99 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 
       13.25        25.41         9.60        23.01         2.53         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11         0.43         0.49         3.02        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.07         0.16         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.99         0.99         1.61         0.92        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.65         8.32        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.43               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            142.49             210.94 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             16.11              15.75 
[1] "0.4 - 142.5 (16.1)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D20V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10Q GAIN MUTATED         3        3         3        13         0
  10Q GAIN WILD-TYPE      21       55        56       161         6
D20V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     3   5   5   9
  10Q GAIN WILD-TYPE  34  90  71 109
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                3                 34
  T2                5                 90
  T3                5                 71
  T4                9                109
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED    11   3   8   0
  10Q GAIN WILD-TYPE 114  42 109   5
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0               11                114
  N1                3                 42
  N2                8                109
  N3                0                  5
D20V6, binary
                    cls
clus                  0  1
  10Q GAIN MUTATED    4  1
  10Q GAIN WILD-TYPE 85 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      4    1
  10Q GAIN WILD-TYPE   85   27
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                4                 85
  MX                1                 27
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     6  18
  10Q GAIN WILD-TYPE 101 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      6   18
  10Q GAIN WILD-TYPE  101  248
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                6                101
  MALE                 18                248
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                      24
  10Q GAIN WILD-TYPE                                   344
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10Q GAIN MUTATED                                                             0
  10Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10Q GAIN MUTATED                                                     0
  10Q GAIN WILD-TYPE                                                   4
D20V8, multiclass
                                                             clus
vv                                                            10Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     24
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            10Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      344
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D20V9, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     6  18
  10Q GAIN WILD-TYPE  68 281
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      6   18
  10Q GAIN WILD-TYPE   68  281
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 6                 68
  YES               18                281
D20V10, continuous
D20V11, continuous
D20V12, continuous

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    27  17
  11P GAIN WILD-TYPE 203 121
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                44                324 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                121 
$`11P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5556 TCGA-BA-6868 TCGA-BB-4225 TCGA-BB-7861 TCGA-C9-A47Z 
        9.30        23.84         6.21         4.60        10.19         0.16 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6997 
       17.79        14.33        13.05        16.04        11.57         3.29 
TCGA-CQ-5323 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7069 
       48.16        11.21         4.21        48.03        33.07        29.59 
TCGA-CR-6484 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7382 TCGA-CV-6003 TCGA-CV-6433 
       11.64        39.12        47.34        26.17        40.96        21.04 
TCGA-CV-6937 TCGA-CV-6950 TCGA-CV-6959 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7255 
       20.52        15.06         8.38        18.97        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7416 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6827 
       36.13        17.82        25.02        27.22        25.41        18.64 
TCGA-D6-8569 TCGA-DQ-7588 TCGA-F7-A50J TCGA-HD-7229 TCGA-IQ-7630 TCGA-IQ-A61K 
        4.18        14.04        19.20         0.07        15.95         5.29 
TCGA-IQ-A61L TCGA-P3-A5QA 
       11.54        54.31 

$`11P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        17.10        20.48        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       21.17        14.79         2.07        12.99         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05        20.52         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4739 TCGA-CN-4740 
       22.78        21.11        21.11        12.99        34.68        26.63 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       35.67        16.83         8.58        12.39        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V 
        3.68         3.75         1.51        14.70        17.26        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        5.75        12.07        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 
       46.75        29.46        45.99        10.42        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       26.76        45.27        16.70        43.00        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
        9.27        47.18        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.40        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
        7.07        43.23        62.43         9.57        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        9.70         5.46         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        12.03        42.35        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 
       53.92        65.82        10.98         7.13        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
        4.96        11.87        18.41        57.47        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.55         7.76        13.25         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       16.11         5.03         3.45         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S 
       18.54        16.11         0.43         0.49         3.02         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.99         0.99         1.61         0.92        34.75         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O 
       14.50        19.30        11.84        13.51        14.47        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         8.32        29.92        15.75        23.70        10.85 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             54.31             210.94 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            16.915             15.470 
[1] "0.1 - 54.3 (16.9)"  "0.1 - 210.9 (15.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11P GAIN MUTATED         5       10         8        18         1
  11P GAIN WILD-TYPE      19       48        51       156         5
D21V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED     6  14   9  13
  11P GAIN WILD-TYPE  31  81  67 105
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                6                 31
  T2               14                 81
  T3                9                 67
  T4               13                105
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    22   4  10   1
  11P GAIN WILD-TYPE 103  41 107   4
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               22                103
  N1                4                 41
  N2               10                107
  N3                1                  4
D21V6, binary
                    cls
clus                  0  1
  11P GAIN MUTATED   17  1
  11P GAIN WILD-TYPE 72 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     17    1
  11P GAIN WILD-TYPE   72   27
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               17                 72
  MX                1                 27
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    14  31
  11P GAIN WILD-TYPE  93 235
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     14   31
  11P GAIN WILD-TYPE   93  235
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               14                 93
  MALE                 31                235
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                      45
  11P GAIN WILD-TYPE                                   323
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11P GAIN MUTATED                                                             0
  11P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11P GAIN MUTATED                                                     0
  11P GAIN WILD-TYPE                                                   4
D21V8, multiclass
                                                             clus
vv                                                            11P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     45
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            11P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      323
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D21V9, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    10  35
  11P GAIN WILD-TYPE  64 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     10   35
  11P GAIN WILD-TYPE   64  264
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                10                 64
  YES               35                264
D21V10, continuous
D21V11, continuous
D21V12, continuous

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    28  20
  11Q GAIN WILD-TYPE 202 118
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                48                320 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                118 
$`11Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5556 TCGA-BA-5558 TCGA-BB-4225 TCGA-BB-7861 TCGA-CN-4731 
        9.30        23.84        53.75         4.60        10.19        22.78 
TCGA-CN-4737 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6018 TCGA-CN-6997 
       17.79        13.05        16.04        11.57         1.48         3.29 
TCGA-CN-A63U TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6225 TCGA-CQ-7063 TCGA-CQ-7065 
       17.26        11.21         4.21        13.25        48.03        33.07 
TCGA-CQ-7069 TCGA-CR-6484 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7383 
       29.59        11.64        39.12        47.34        24.95        17.13 
TCGA-CV-6003 TCGA-CV-6937 TCGA-CV-6950 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7235 
       40.96        20.52        15.06         8.38        28.31        56.68 
TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7440 
       17.10         2.10        36.13        25.02       100.54        21.99 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5631 
       27.22        25.41         5.03        18.64         3.42        18.02 
TCGA-F7-A50J TCGA-HD-7229 TCGA-IQ-7630 TCGA-IQ-A61K TCGA-P3-A5Q6 TCGA-P3-A5QA 
       19.20         0.07        15.95         5.29        15.75        54.31 

$`11Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       42.31        57.90        17.10        20.48        57.44         6.21 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       21.17        14.79         2.07        12.99         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       15.19        21.11        21.11        12.99        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       26.63        35.67        16.83         8.58        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       22.45         9.01        14.73        13.94        12.20        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       10.36        14.24        12.85         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y 
        3.68         3.75         1.51        14.70        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 
       46.75        29.46        45.99        10.42        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       45.27        16.70        43.00        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.18        40.90        35.84         3.42         3.06        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.85        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       23.05        86.83        48.59        60.49         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.04        62.43         9.57        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       65.82        10.98         7.13         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       10.75       114.94         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        18.97        95.34         4.96        11.87        47.97 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
        5.98        24.66        10.39        10.55         7.76        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 
        9.60        23.01         2.53        16.11         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        3.68        58.42        35.54        16.96        33.86        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        25.48        20.42         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        3.02         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.87         4.34         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       34.75         4.01        14.50        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       14.47        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.65         8.32        29.92 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            100.54             210.94 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            17.525             14.825 
[1] "0.1 - 100.5 (17.5)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11Q GAIN MUTATED         6        9         9        23         0
  11Q GAIN WILD-TYPE      18       49        50       151         6
D22V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED     7  12  12  16
  11Q GAIN WILD-TYPE  30  83  64 102
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                7                 30
  T2               12                 83
  T3               12                 64
  T4               16                102
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    22   3  16   0
  11Q GAIN WILD-TYPE 103  42 101   5
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               22                103
  N1                3                 42
  N2               16                101
  N3                0                  5
D22V6, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED   15  3
  11Q GAIN WILD-TYPE 74 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     15    3
  11Q GAIN WILD-TYPE   74   25
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               15                 74
  MX                3                 25
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    17  33
  11Q GAIN WILD-TYPE  90 233
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     17   33
  11Q GAIN WILD-TYPE   90  233
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               17                 90
  MALE                 33                233
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                      50
  11Q GAIN WILD-TYPE                                   318
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11Q GAIN MUTATED                                                             0
  11Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11Q GAIN MUTATED                                                     0
  11Q GAIN WILD-TYPE                                                   4
D22V8, multiclass
                                                             clus
vv                                                            11Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     50
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            11Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      318
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D22V9, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     7  43
  11Q GAIN WILD-TYPE  67 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      7   43
  11Q GAIN WILD-TYPE   67  256
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 7                 67
  YES               43                256
D22V10, continuous
D22V11, continuous
D22V12, continuous

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    68  37
  12P GAIN WILD-TYPE 162 101
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               105                263 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                37                101 
$`12P GAIN MUTATED`
TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BB-4223 TCGA-BB-4224 
       17.10        57.44         2.07        29.42        95.05         9.04 
TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7870 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4728 
        4.60        17.59        37.87         0.16        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-5359 
        5.13        17.79        14.33        34.68        16.83        12.39 
TCGA-CN-5366 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
       11.84        12.20         1.48        13.94         7.36         1.38 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A49B TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CQ-6220 
        3.91         3.68        14.70        46.75        10.42        32.35 
TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6487 
       32.35        16.70        84.23        11.77        58.42         7.66 
TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7383 
       12.46        47.18        39.12        24.95        34.06        17.13 
TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 
       29.82         7.10         5.13         5.92       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6933 
      129.21       108.33       107.51         7.07        40.96        90.08 
TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6959 TCGA-CV-6962 
       20.52        26.43        11.24        12.03         8.38         4.14 
TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7243 
      111.12         1.84        52.31        21.76        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 
       26.20        18.97        17.10        47.97        36.13        35.54 
TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7435 
       17.82        25.02        25.94         0.07        34.09       142.49 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       16.60        21.99         7.76        27.22        13.25        25.41 
TCGA-D6-6823 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       23.01        58.42        16.96        14.04        18.90        20.42 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-F7-A50J TCGA-F7-A61S TCGA-H7-7774 TCGA-H7-8501 
        9.83        18.54        19.20         0.10        13.38         1.87 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
        0.16         0.82         1.02         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 
        1.84         3.65        15.75 

$`12P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        42.31        57.90        23.84        20.48        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        6.21        21.17        14.79        12.99         3.72         7.76 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 
        6.12         4.37        18.31        10.19        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        14.04        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
        6.31        23.70         4.67         6.38        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       21.11        21.11        12.99        26.63        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
       16.04         8.58        35.54         8.28        16.21        11.54 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 
       13.94        14.24        10.36        14.24        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 
        9.07         6.61         5.82         2.73         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        54.54        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
       11.21         4.21        28.60        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       43.00        29.59        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.34        11.64        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
        9.27        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       29.85        29.52        30.54        35.41        29.92        48.36 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        94.85        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       60.49        43.23        21.04        62.43         9.57         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 
        9.70         5.46         4.70        21.86       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
       10.98         7.13        28.31         2.50        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7104 
       18.81        12.66         7.99         9.01         5.23        12.89 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87         2.10        18.41        57.47 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7423 
      210.94        89.33         9.67         0.46        22.85       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE 
       84.49        19.73         7.13         6.38         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.39        10.55         9.60         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 
       18.64         3.45         4.18         3.68         3.42        35.54 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       33.86        18.02        25.48        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V 
       11.18        16.11         0.43         0.49         3.02        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-8224 
        0.46         0.43         0.20         4.34         0.07         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67F 
       14.47         5.29        11.54        11.84         7.33         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        54.31        23.70        10.85 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.07               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            142.49             210.94 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             17.10              14.79 
[1] "0.1 - 142.5 (17.1)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
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  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
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"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12P GAIN MUTATED         9       16        19        49         2
  12P GAIN WILD-TYPE      15       42        40       125         4
D23V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  12P GAIN MUTATED   11 29 23 32
  12P GAIN WILD-TYPE 26 66 53 86
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               11                 26
  T2               29                 66
  T3               23                 53
  T4               32                 86
                    vv
clus                 N0 N1 N2 N3
  12P GAIN MUTATED   40 12 33  2
  12P GAIN WILD-TYPE 85 33 84  3
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               40                 85
  N1               12                 33
  N2               33                 84
  N3                2                  3
D23V6, binary
                    cls
clus                  0  1
  12P GAIN MUTATED   24  6
  12P GAIN WILD-TYPE 65 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     24    6
  12P GAIN WILD-TYPE   65   22
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               24                 65
  MX                6                 22
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    27  80
  12P GAIN WILD-TYPE  80 186
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     27   80
  12P GAIN WILD-TYPE   80  186
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               27                 80
  MALE                 80                186
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                     107
  12P GAIN WILD-TYPE                                   261
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12P GAIN MUTATED                                                             0
  12P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12P GAIN MUTATED                                                     0
  12P GAIN WILD-TYPE                                                   4
D23V8, multiclass
                                                             clus
vv                                                            12P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    107
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      261
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D23V9, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    22  85
  12P GAIN WILD-TYPE  52 214
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     22   85
  12P GAIN WILD-TYPE   52  214
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                22                 52
  YES               85                214
D23V10, continuous
D23V11, continuous
D23V12, continuous

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    41  23
  12Q GAIN WILD-TYPE 189 115
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                64                304 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                23                115 
$`12Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7870 
       57.44         2.07        29.42        95.05         4.60        37.87 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4737 TCGA-CN-4739 
        0.16        15.95         6.38        20.15        17.79        34.68 
TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6023 
       16.83        12.39        11.84        14.73        12.20        13.94 
TCGA-CN-6988 TCGA-CN-6995 TCGA-CN-A49B TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CQ-6224 
        1.38         3.68        14.70        10.42        32.35        32.35 
TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7365 TCGA-CR-7379 TCGA-CR-7383 
       16.70        11.77        58.42        39.12        34.06        17.13 
TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-6940 TCGA-CV-6941 
        5.92       139.40        17.16       108.33        26.43        11.24 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7102 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
        8.38         4.14         1.84        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7435 
       18.97        17.10        25.02         0.07        34.09       142.49 
TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-7588 
       16.60        21.99        13.25        25.41        23.01        14.04 
TCGA-DQ-7589 TCGA-DQ-7591 TCGA-F7-A50J TCGA-F7-A61S TCGA-H7-7774 TCGA-HD-7753 
       18.90        20.42        19.20         0.10        13.38         0.16 
TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G 
        0.46        12.89         1.84         3.65 

$`12Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         6.21        21.17        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.82         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       17.59        13.87        22.59        20.98        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       71.05        20.52         0.13         6.31        23.70         4.67 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        15.19        22.78        21.11        21.11        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       14.33        26.63        35.67        13.05        16.04         8.58 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
       35.54         8.28        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45         9.01        13.94        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        7.36         5.82         2.73         3.91         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       45.99        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       33.07        43.00        29.59        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 
       35.41        29.92        48.36       129.21        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        21.04        62.43         9.57 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       21.86       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       47.47        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7423 
       89.33         9.67         0.46        22.85        25.94       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE 
       84.49        19.73         7.13         6.38         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6824 
       10.39        10.55         7.76        27.22         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.11         5.03        18.64         3.45         4.18         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.42        35.54        16.96        33.86        18.02 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       25.48         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V 
       18.54        16.11         0.43         0.49         3.02        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.20         1.87         4.34         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       19.30        11.84        13.51        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       11.84         7.33         1.12         3.65         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       15.75        54.31        23.70        10.85 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.07               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            142.49             210.94 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            16.765             15.175 
[1] "0.1 - 142.5 (16.8)" "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
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        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12Q GAIN MUTATED         6        8        13        30         0
  12Q GAIN WILD-TYPE      18       50        46       144         6
D24V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  12Q GAIN MUTATED    7 15 16 19
  12Q GAIN WILD-TYPE 30 80 60 99
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                7                 30
  T2               15                 80
  T3               16                 60
  T4               19                 99
                    vv
clus                 N0 N1 N2 N3
  12Q GAIN MUTATED   27  6 19  0
  12Q GAIN WILD-TYPE 98 39 98  5
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               27                 98
  N1                6                 39
  N2               19                 98
  N3                0                  5
D24V6, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED   15  4
  12Q GAIN WILD-TYPE 74 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     15    4
  12Q GAIN WILD-TYPE   74   24
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               15                 74
  MX                4                 24
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    18  47
  12Q GAIN WILD-TYPE  89 219
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     18   47
  12Q GAIN WILD-TYPE   89  219
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               18                 89
  MALE                 47                219
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                      65
  12Q GAIN WILD-TYPE                                   303
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12Q GAIN MUTATED                                                             0
  12Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12Q GAIN MUTATED                                                     0
  12Q GAIN WILD-TYPE                                                   4
D24V8, multiclass
                                                             clus
vv                                                            12Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     65
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      303
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D24V9, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    18  47
  12Q GAIN WILD-TYPE  56 252
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     18   47
  12Q GAIN WILD-TYPE   56  252
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                18                 56
  YES               47                252
D24V10, continuous
D24V11, continuous
D24V12, continuous

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    27  18
  13Q GAIN WILD-TYPE 203 120
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                45                323 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                18                120 
$`13Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BB-4225 TCGA-CN-4726 TCGA-CN-4728 
        9.30        14.79        29.42         4.60         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4742 TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6989 
        5.13        17.79        13.05         8.52        14.24         5.82 
TCGA-CN-6996 TCGA-CN-A63V TCGA-CN-A63Y TCGA-CR-5247 TCGA-CR-6484 TCGA-CR-6488 
        3.75        15.88         5.75        11.77        11.64        12.46 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7380 TCGA-CR-7390 TCGA-CV-5440 
       39.12        47.34         3.42        19.92        29.82       107.51 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6939 TCGA-CV-6956 TCGA-CV-7090 TCGA-CV-7095 
       40.96        90.08        21.86         7.13       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7416 TCGA-CV-7423 
       12.66        71.21        31.33        18.97        25.02       100.54 
TCGA-CV-7437 TCGA-D6-6823 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-F7-A50J 
       16.60        23.01         4.18        16.96        18.02        19.20 
TCGA-IQ-A61G TCGA-MT-A51W TCGA-MT-A51X 
       11.84         0.46         1.12 

$`13Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         6.21        21.17         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.04        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
        6.31        23.70        15.95         6.38        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        21.11        12.99        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       35.67        16.04        16.83         8.58        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 
       22.45         9.01        14.73        13.94        12.20        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
       13.94         7.36         1.38         2.73         3.91         3.68 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5323 
        3.29         1.51        14.70        17.26        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 
        6.02        11.90        10.22        11.34         7.66        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       15.75         9.27        47.18        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.85        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       23.05        86.83        48.59        60.49         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43         9.57         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       64.80       111.12         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
        0.46        22.85        25.94         0.07        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
       19.73         7.13       142.49         6.38        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 
        3.45         3.68         3.42        58.42        35.54        33.86 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        0.49         3.02         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       19.30        13.51        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        7.33        12.89         1.84         3.65         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        15.75        54.31        23.70        10.85 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.46               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            126.12             210.94 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             16.60              15.75 
[1] "0.5 - 126.1 (16.6)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D25V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  13Q GAIN MUTATED         1        9         9        18         1
  13Q GAIN WILD-TYPE      23       49        50       156         5
D25V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     2  13  10  13
  13Q GAIN WILD-TYPE  35  82  66 105
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                2                 35
  T2               13                 82
  T3               10                 66
  T4               13                105
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED    12   7  13   0
  13Q GAIN WILD-TYPE 113  38 104   5
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0               12                113
  N1                7                 38
  N2               13                104
  N3                0                  5
D25V6, binary
                    cls
clus                  0  1
  13Q GAIN MUTATED   11  4
  13Q GAIN WILD-TYPE 78 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     11    4
  13Q GAIN WILD-TYPE   78   24
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               11                 78
  MX                4                 24
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    12  33
  13Q GAIN WILD-TYPE  95 233
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     12   33
  13Q GAIN WILD-TYPE   95  233
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE               12                 95
  MALE                 33                233
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                      45
  13Q GAIN WILD-TYPE                                   323
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  13Q GAIN MUTATED                                                             0
  13Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  13Q GAIN MUTATED                                                     0
  13Q GAIN WILD-TYPE                                                   4
D25V8, multiclass
                                                             clus
vv                                                            13Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     45
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            13Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      323
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D25V9, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    13  32
  13Q GAIN WILD-TYPE  61 267
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     13   32
  13Q GAIN WILD-TYPE   61  267
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                13                 61
  YES               32                267
D25V10, continuous
D25V11, continuous
D25V12, continuous

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    59  47
  14Q GAIN WILD-TYPE 171  91
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               106                262 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                47                 91 
$`14Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
        9.30        17.10        12.99         3.72         7.76        29.42 
TCGA-BA-A6DA TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4730 
       11.54        20.52         0.16         0.13        23.70        15.19 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-5367 
       14.33        26.63        16.83         8.28        11.84        11.57 
TCGA-CN-6021 TCGA-CN-6994 TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5330 
        9.07         3.91        48.16         2.93        46.75        29.46 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 
        4.21        32.35        32.35        13.25         4.21        26.76 
TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 
       16.70        29.59        18.51        16.90        12.46        11.51 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       47.34         3.42        24.95         9.17        34.06        19.92 
TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7390 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 
       17.13        27.02        29.82       129.21       108.33        17.95 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
      107.51        80.12        13.35        86.83        60.49        40.96 
TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 
        2.14        26.43        11.24       126.08        12.03        15.06 
TCGA-CV-6954 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7178 
       65.82       126.12       111.12        18.81         5.23        71.21 
TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7254 
       10.75        47.47        31.33        26.20        17.10        47.97 
TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
        2.10        17.82         9.67        22.85        25.02        25.94 
TCGA-CV-7429 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7086 
        3.48         7.13        16.60        21.99        24.66         7.76 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-A4Z9 TCGA-DQ-5625 
       27.22        25.41        23.01        16.11         3.68        35.54 
TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-F7-A50I 
       16.96        14.04        18.90         9.83        12.13         3.02 
TCGA-F7-A50J TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-A61E TCGA-IQ-A61J TCGA-IQ-A61K 
       19.20         0.16         1.02        19.30        14.47         5.29 
TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X TCGA-P3-A5Q6 
       11.54         0.46         1.12        15.75 

$`14Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BA-A6DB 
        6.21        21.17        14.79         2.07        16.83         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.65         5.95         7.82         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 
       22.78        21.11        21.11        12.99        17.79        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       35.67        13.05        16.04         8.58        12.39        35.54 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.54        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        12.20        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        1.48        12.85         3.19         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         2.73         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        1.51        14.70        17.26        15.88         5.75        12.07 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       39.68        21.50        54.54        45.99        10.42        11.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 
       28.60        32.88        34.75        14.96        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        43.00        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7385 
        3.06        29.23         0.99        31.96        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       47.01        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 
       48.36       139.40        17.16        47.28        19.20        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       76.47        91.50        17.06        23.05        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
       43.23        21.04        62.43         9.57        90.08         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6948 
        5.46        20.52         4.70        21.86        19.79        42.35 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       30.05         6.08        53.92        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7097 TCGA-CV-7099 
       28.31         2.50         4.14        64.80        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7183 
        9.01         1.84        52.31        12.89        21.76       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 
       56.68         4.73        36.00        18.97        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
       11.87        36.13        18.41        57.47        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       89.33         0.46         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 
      142.49         6.38         5.98        10.39        10.55        13.25 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        9.60         2.53         5.03        18.64         3.45         4.18 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 
        3.42        58.42        33.86        18.02        25.48        20.42 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
        0.49         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 
       13.38         1.87         4.34         0.07         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61O 
       15.95         4.01        14.50        11.84        13.51        11.84 
TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        7.33        12.89         1.84         3.65         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        54.31        23.70        10.85 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.13               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            129.21             210.94 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            17.030             14.715 
[1] "0.1 - 129.2 (17.0)" "0.1 - 210.9 (14.7)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  14Q GAIN MUTATED         9       18        18        47         3
  14Q GAIN WILD-TYPE      15       40        41       127         3
D26V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  14Q GAIN MUTATED   10 28 21 36
  14Q GAIN WILD-TYPE 27 67 55 82
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               10                 27
  T2               28                 67
  T3               21                 55
  T4               36                 82
                    vv
clus                 N0 N1 N2 N3
  14Q GAIN MUTATED   36 12 34  2
  14Q GAIN WILD-TYPE 89 33 83  3
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               36                 89
  N1               12                 33
  N2               34                 83
  N3                2                  3
D26V6, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED   26  4
  14Q GAIN WILD-TYPE 63 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     26    4
  14Q GAIN WILD-TYPE   63   24
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               26                 63
  MX                4                 24
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    34  74
  14Q GAIN WILD-TYPE  73 192
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     34   74
  14Q GAIN WILD-TYPE   73  192
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               34                 73
  MALE                 74                192
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                     108
  14Q GAIN WILD-TYPE                                   260
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  14Q GAIN MUTATED                                                             0
  14Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  14Q GAIN MUTATED                                                     0
  14Q GAIN WILD-TYPE                                                   4
D26V8, multiclass
                                                             clus
vv                                                            14Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    108
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            14Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      260
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D26V9, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    20  88
  14Q GAIN WILD-TYPE  54 211
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     20   88
  14Q GAIN WILD-TYPE   54  211
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                20                 54
  YES               88                211
D26V10, continuous
D26V11, continuous
D26V12, continuous

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    35  26
  15Q GAIN WILD-TYPE 195 112
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                61                307 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                26                112 
$`15Q GAIN MUTATED`
TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-7861 TCGA-BB-8596 TCGA-C9-A47Z TCGA-CN-4729 
        2.07         3.72        10.19        71.05         0.16         5.13 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5365 TCGA-CN-5366 
       17.79        34.68        26.63        16.83        11.54        11.84 
TCGA-CN-6010 TCGA-CN-6995 TCGA-CN-A63U TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7069 
       14.73         3.68        17.26        13.25        14.96        29.59 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-7364 TCGA-CR-7365 
       18.51        16.90        11.64        11.51        47.18        39.12 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7390 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6959 
       34.06        19.92        29.82        40.96         2.14         8.38 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7254 
      126.12       111.12         5.23        71.21        56.68        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
        2.10        36.13         9.67        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7427 TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-A6JD TCGA-D6-6516 
        0.07       156.49        19.73        16.60         5.98        25.41 
TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-F7-7848 TCGA-H7-8501 
        4.18        16.96        14.04        18.90        18.54         1.87 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7632 TCGA-MT-A67A 
        0.16         1.02         1.61         0.92        14.50        12.89 
TCGA-MT-A67G 
        3.65 

$`15Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         6.21        21.17        14.79        12.99 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.83        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 
       37.87        14.04        14.33        20.52         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       23.70        15.95         4.67         6.38        20.15        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4741 
       22.78        21.11        21.11        12.99        14.33        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.04         8.58        12.39        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         2.73         3.91         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        14.70        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 
       32.88        34.75        32.35         4.21        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       45.27        33.07        16.70        43.00        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       34.52        36.99         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 
        7.66        12.46        15.75         9.27        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96         9.17        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       139.40        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95       107.51        94.85        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       60.49         7.07        43.23        21.04        62.43         9.57 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7095 
        7.13        28.31         2.50         4.14        64.80        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       21.76        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       11.87        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       89.33         0.46        34.09       100.54        14.86        56.48 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        16.27        84.49         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
        6.38        21.99        24.66        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         9.60        23.01         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
        5.03        18.64         3.45         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       35.54        33.86        18.02        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65        11.18        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.20         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 
        0.43         0.20        13.38         4.34         0.07         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
        4.01        19.30        11.84        13.51        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D 
       11.54        11.84         7.33         0.46         1.12         1.84 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         8.32        29.92        15.75        54.31        23.70 
TCGA-P3-A5QF 
       10.85 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.07               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            156.49             210.94 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             16.60              15.75 
[1] "0.1 - 156.5 (16.6)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  15Q GAIN MUTATED         4       10         8        31         2
  15Q GAIN WILD-TYPE      20       48        51       143         4
D27V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  15Q GAIN MUTATED    7 16  6 26
  15Q GAIN WILD-TYPE 30 79 70 92
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                7                 30
  T2               16                 79
  T3                6                 70
  T4               26                 92
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    24   7  16   1
  15Q GAIN WILD-TYPE 101  38 101   4
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               24                101
  N1                7                 38
  N2               16                101
  N3                1                  4
D27V6, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED   14  7
  15Q GAIN WILD-TYPE 75 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     14    7
  15Q GAIN WILD-TYPE   75   21
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               14                 75
  MX                7                 21
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    19  42
  15Q GAIN WILD-TYPE  88 224
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     19   42
  15Q GAIN WILD-TYPE   88  224
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               19                 88
  MALE                 42                224
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                      61
  15Q GAIN WILD-TYPE                                   307
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  15Q GAIN MUTATED                                                             0
  15Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  15Q GAIN MUTATED                                                     0
  15Q GAIN WILD-TYPE                                                   4
D27V8, multiclass
                                                             clus
vv                                                            15Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     61
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            15Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      307
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D27V9, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    11  50
  15Q GAIN WILD-TYPE  63 249
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     11   50
  15Q GAIN WILD-TYPE   63  249
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                11                 63
  YES               50                249
D27V10, continuous
D27V11, continuous
D27V12, continuous

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    45  30
  16P GAIN WILD-TYPE 185 108
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                75                293 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                30                108 
$`16P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        9.30        17.10        57.44         6.21        21.17        14.79 
TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-A4IF TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 
        2.07         3.72        29.42         0.16        20.15        15.19 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-5356 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6022 
       17.79        34.68        16.83        14.24         3.19         6.61 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-A63U TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-6220 
        3.91         3.75        17.26         2.93        46.75        32.35 
TCGA-CQ-6223 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 
       34.75        16.70        11.77        16.90         6.02        10.22 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7380 
       39.12        47.34         3.42        24.95        34.06        19.92 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7402 TCGA-CV-5439 TCGA-CV-5978 TCGA-CV-6003 
       27.02        29.82        29.92        17.95         7.07        40.96 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6954 
       90.08        20.52        21.86        11.24        12.03        65.82 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
      111.12        18.81        10.75        36.00        31.33        26.20 
TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7423 
       17.10         2.10        18.41        17.82        22.85       100.54 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-8569 
       19.73       142.49         7.76        25.41        23.01         4.18 
TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-F7-A50J TCGA-F7-A623 TCGA-HD-8634 
       35.54        18.02        14.04        19.20         0.20         0.99 
TCGA-IQ-7631 TCGA-IQ-A61L TCGA-MT-A51W 
        4.01        11.54         0.46 

$`16P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6872 
       42.31        57.90        23.84        20.48        53.75        12.99 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        7.76        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       37.87        14.04        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
        6.31        23.70        15.95         4.67         6.38         5.13 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 
       22.78        21.11        21.11        12.99        14.33        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       35.67        13.05        16.04         8.58        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        22.45         9.01        14.73        13.94        12.20 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 
       10.36        14.24         1.48        12.85         9.07        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 
        7.36         1.38         5.82         2.73         3.68         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        14.70        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68        21.50        54.54        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 
       11.21         4.21        28.60        32.88        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       43.00        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       15.75         9.27        47.18        40.90        35.84         3.06 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 
       29.23         0.99        31.96         9.17        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       139.40        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        21.04        62.43         9.57         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        5.46         4.70        26.43       126.08        19.79        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        71.21       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       47.47        18.97        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        57.47        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
        0.46        25.02        25.94         0.07        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
        7.13        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 
       10.39        10.55        27.22        13.25         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11         5.03        18.64         3.45         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       58.42        16.96        33.86        18.90        25.48        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V 
       16.11         0.43         0.49         3.02         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.61         0.92        34.75        15.95        14.50        19.30 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       11.84        13.51        14.47         5.29        11.84         7.33 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        15.75        54.31        23.70        10.85 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.16               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            142.49             210.94 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             17.82              14.70 
[1] "0.2 - 142.5 (17.8)" "0.1 - 210.9 (14.7)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16P GAIN MUTATED         6       12        12        28         3
  16P GAIN WILD-TYPE      18       46        47       146         3
D28V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  16P GAIN MUTATED    7 18 14 22
  16P GAIN WILD-TYPE 30 77 62 96
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                7                 30
  T2               18                 77
  T3               14                 62
  T4               22                 96
                    vv
clus                 N0 N1 N2 N3
  16P GAIN MUTATED   27  9 18  2
  16P GAIN WILD-TYPE 98 36 99  3
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               27                 98
  N1                9                 36
  N2               18                 99
  N3                2                  3
D28V6, binary
                    cls
clus                  0  1
  16P GAIN MUTATED   14  3
  16P GAIN WILD-TYPE 75 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     14    3
  16P GAIN WILD-TYPE   75   25
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               14                 75
  MX                3                 25
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    23  53
  16P GAIN WILD-TYPE  84 213
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     23   53
  16P GAIN WILD-TYPE   84  213
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               23                 84
  MALE                 53                213
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                      76
  16P GAIN WILD-TYPE                                   292
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16P GAIN MUTATED                                                             0
  16P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16P GAIN MUTATED                                                     0
  16P GAIN WILD-TYPE                                                   4
D28V8, multiclass
                                                             clus
vv                                                            16P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     76
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            16P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      292
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D28V9, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    16  60
  16P GAIN WILD-TYPE  58 239
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     16   60
  16P GAIN WILD-TYPE   58  239
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                16                 58
  YES               60                239
D28V10, continuous
D28V11, continuous
D28V12, continuous

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    44  37
  16Q GAIN WILD-TYPE 186 101
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                81                287 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                37                101 
$`16Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-A4IF 
        9.30         6.21        14.79         2.07         3.72        29.42 
TCGA-BA-A6DA TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4737 TCGA-CN-4739 
       11.54         0.16        20.15        15.19        17.79        34.68 
TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 
       14.24         3.19         6.61         5.82         3.91         3.75 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7067 
       46.75        29.46        32.35        34.75        13.25        16.70 
TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7374 
       11.77        16.90         6.02        39.12        24.95         0.99 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7390 TCGA-CV-5439 TCGA-CV-5977 
       34.06        19.92        27.02        29.82        17.95        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 
        7.07        43.23        40.96        90.08        20.52        21.86 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 
       11.24        12.03        65.82       111.12        18.81         7.99 
TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 
        1.84        21.76        71.21        10.75        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7415 
       26.20        17.10        18.41        57.47        17.82        22.85 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7433 TCGA-CV-7435 TCGA-D6-6516 TCGA-D6-6823 
       25.02       100.54        19.73       142.49        25.41        23.01 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-F7-A50J TCGA-F7-A623 
        3.45         4.18        18.02        14.04        19.20         0.20 
TCGA-HD-7753 TCGA-HD-8314 TCGA-HD-8634 TCGA-IQ-7631 TCGA-IQ-A61K TCGA-IQ-A61L 
        0.16         1.45         0.99         4.01         5.29        11.54 
TCGA-MT-A51W TCGA-MT-A51X TCGA-P3-A5Q6 
        0.46         1.12        15.75 

$`16Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DB 
       57.44        21.17        12.99         7.76        16.83         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.65         5.95         7.82         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       20.52         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        6.38         5.13        22.78        21.11        21.11        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       14.33        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        13.94        12.20        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
       12.85         9.07        13.94         7.36         1.38         2.73 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V 
        3.68         3.29         1.51        14.70        17.26        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       54.54        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.88        32.35         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       45.27        33.07        43.00        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       36.99        18.51        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.34        40.90        35.84         3.42         3.06        29.23 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96         9.17        26.17        17.13        32.78        47.01 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.40        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6433 TCGA-CV-6436 
       13.35        23.05        86.83        48.59        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6940 
        9.57         2.14         9.70         5.46         4.70        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.92        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
        4.14        64.80       126.12        12.66         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.89       114.94        56.68         4.73        47.47 
TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       18.97        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       36.13        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94         0.07        34.09        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7437 
       54.90         3.48        16.27        84.49         7.13        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        6.38        21.99         5.98        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
        7.76        27.22        13.25         9.60         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        5.03        18.64         3.68         3.42        58.42        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        33.86        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.43         0.49         3.02         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 
        0.43        13.38         1.87         4.34         0.07         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.02         1.81         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
       15.95        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
       11.84         7.33        12.89         1.84         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        54.31        23.70        10.85 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.16               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            142.49             210.94 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             17.79              14.96 
[1] "0.2 - 142.5 (17.8)" "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16Q GAIN MUTATED         7       16        11        34         3
  16Q GAIN WILD-TYPE      17       42        48       140         3
D29V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  16Q GAIN MUTATED   10 23 15 23
  16Q GAIN WILD-TYPE 27 72 61 95
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1               10                 27
  T2               23                 72
  T3               15                 61
  T4               23                 95
                    vv
clus                 N0 N1 N2 N3
  16Q GAIN MUTATED   28  8 25  2
  16Q GAIN WILD-TYPE 97 37 92  3
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               28                 97
  N1                8                 37
  N2               25                 92
  N3                2                  3
D29V6, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED   17  3
  16Q GAIN WILD-TYPE 72 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     17    3
  16Q GAIN WILD-TYPE   72   25
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               17                 72
  MX                3                 25
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    29  53
  16Q GAIN WILD-TYPE  78 213
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     29   53
  16Q GAIN WILD-TYPE   78  213
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               29                 78
  MALE                 53                213
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                      81
  16Q GAIN WILD-TYPE                                   287
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16Q GAIN MUTATED                                                             0
  16Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16Q GAIN MUTATED                                                     1
  16Q GAIN WILD-TYPE                                                   3
D29V8, multiclass
                                                             clus
vv                                                            16Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     81
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            16Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      287
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D29V9, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    16  66
  16Q GAIN WILD-TYPE  58 233
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     16   66
  16Q GAIN WILD-TYPE   58  233
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                16                 58
  YES               66                233
D29V10, continuous
D29V11, continuous
D29V12, continuous

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    30  19
  17P GAIN WILD-TYPE 200 119
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                49                319 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                19                119 
$`17P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BB-4225 TCGA-BB-8601 
        9.30        12.99         7.76        29.42         4.60        20.52 
TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-5356 TCGA-CN-5366 TCGA-CN-5370 TCGA-CN-6023 
        0.16        20.15        16.83        11.84         8.52        13.94 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-A63U TCGA-CQ-5329 TCGA-CQ-6229 TCGA-CR-5247 
        5.82         3.91        17.26        46.75        26.76        11.77 
TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7383 
       58.42         6.02        12.46        39.12         3.42        17.13 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5977 
       48.36       139.40       129.21       108.33       107.51        60.49 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 
       40.96        90.08        26.43        11.24        12.03        15.06 
TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7248 TCGA-CV-7254 
       30.05         4.14        18.81         5.23        17.10        47.97 
TCGA-CV-7261 TCGA-CV-7414 TCGA-F7-8298 TCGA-F7-A50I TCGA-HD-7917 TCGA-IQ-A61L 
       36.13         0.46        16.11         3.02         1.02        11.54 
TCGA-IQ-A61O 
       11.84 

$`17P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         6.21        21.17        14.79         2.07         3.72 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05         0.13         6.31        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38         5.13        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       35.67        13.05        16.04         8.58        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
        8.28        16.21        11.54        11.57        12.49        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        7.36         1.38         2.73         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        14.70        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        54.54        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 
       34.75        32.35        13.25         4.21        14.96        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        43.00        29.59        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        18.51        16.90        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64         7.66        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
        5.92        35.41        29.92        17.16        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        86.83        48.59         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43         9.57         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
       20.52         4.70        21.86       126.08        19.79        42.35 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       28.31         2.50        64.80       126.12       111.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        18.97        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87         2.10        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
      142.49        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.45         4.18         3.68         3.42        58.42        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       18.54         0.43         0.49        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         0.82         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       14.50        19.30        11.84        13.51        14.47         5.29 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         8.32        29.92        15.75        54.31        23.70 
TCGA-P3-A5QF 
       10.85 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.16               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            139.40             210.94 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             16.11              15.75 
[1] "0.2 - 139.4 (16.1)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17P GAIN MUTATED         2        8        12        20         0
  17P GAIN WILD-TYPE      22       50        47       154         6
D30V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED     2  14  13  13
  17P GAIN WILD-TYPE  35  81  63 105
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                2                 35
  T2               14                 81
  T3               13                 63
  T4               13                105
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED    15   8  15   0
  17P GAIN WILD-TYPE 110  37 102   5
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0               15                110
  N1                8                 37
  N2               15                102
  N3                0                  5
D30V6, binary
                    cls
clus                  0  1
  17P GAIN MUTATED   11  4
  17P GAIN WILD-TYPE 78 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     11    4
  17P GAIN WILD-TYPE   78   24
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               11                 78
  MX                4                 24
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    11  38
  17P GAIN WILD-TYPE  96 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     11   38
  17P GAIN WILD-TYPE   96  228
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               11                 96
  MALE                 38                228
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                      48
  17P GAIN WILD-TYPE                                   320
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17P GAIN MUTATED                                                             1
  17P GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17P GAIN MUTATED                                                     0
  17P GAIN WILD-TYPE                                                   4
D30V8, multiclass
                                                             clus
vv                                                            17P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     48
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            17P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      320
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D30V9, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    11  38
  17P GAIN WILD-TYPE  63 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     11   38
  17P GAIN WILD-TYPE   63  261
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                11                 63
  YES               38                261
D30V10, continuous
D30V11, continuous
D30V12, continuous

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    36  26
  17Q GAIN WILD-TYPE 194 112
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                62                306 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                26                112 
$`17Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BB-4225 TCGA-BB-8601 TCGA-C9-A47Z 
       12.99         7.76        29.42         4.60        20.52         0.16 
TCGA-CN-4728 TCGA-CN-4737 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-6022 
       20.15        17.79        16.83        12.39        11.84         6.61 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-A63U TCGA-CN-A641 
       13.94         1.38         5.82         3.91        17.26        12.07 
TCGA-CQ-6225 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-6478 
       13.25        29.59        11.77        58.42        36.99         6.02 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7399 TCGA-CR-7404 
       39.12         3.42        17.13        29.82         5.92        48.36 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6003 
      139.40       129.21       107.51        13.35        60.49        40.96 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 
       90.08        26.43        11.24        12.03        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7248 
        6.08         4.14        18.81         5.23         1.84        17.10 
TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7424 
       95.34        47.97        36.13        22.85         0.07        14.86 
TCGA-D6-8569 TCGA-DQ-7588 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-A61L 
        4.18        14.04         4.34         0.16         1.02        11.54 
TCGA-IQ-A61O TCGA-MT-A67D 
       11.84         1.84 

$`17Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         6.21        21.17        14.79         2.07 
TCGA-BA-6873 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
        3.72        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       15.95         4.67         6.38         5.13        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        21.11        12.99        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 
       35.67        13.05        16.04         8.58        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6024 
       14.24         1.48        12.85         3.19         9.07         7.36 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        2.73         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
       15.88         5.75        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.54        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       16.70        43.00        84.23        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 
       50.01        39.52        34.52        18.51        16.90        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5431 TCGA-CV-5434 
        7.10         5.13        35.41        29.92        17.16       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        94.85        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       80.12        17.06        23.05        86.83        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        21.04        62.43         9.57         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 
        5.46        20.52         4.70        21.86       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       42.35        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       28.31         2.50        64.80       126.12       111.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       31.33        26.20        18.97         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 
        9.67         0.46        25.02        25.94        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.01         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
        5.03        18.64         3.45         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        18.02        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11         0.43         0.49         3.02        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        1.87         0.07         0.82         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       14.50        19.30        11.84        13.51        14.47         5.29 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46         1.12        12.89         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            139.40             210.94 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            13.645             16.075 
[1] "0.1 - 139.4 (13.6)" "0.1 - 210.9 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17Q GAIN MUTATED         2        8        11        32         0
  17Q GAIN WILD-TYPE      22       50        48       142         6
D31V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  17Q GAIN MUTATED    2 15 16 20
  17Q GAIN WILD-TYPE 35 80 60 98
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                2                 35
  T2               15                 80
  T3               16                 60
  T4               20                 98
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED    17   8  24   0
  17Q GAIN WILD-TYPE 108  37  93   5
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               17                108
  N1                8                 37
  N2               24                 93
  N3                0                  5
D31V6, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED   14  6
  17Q GAIN WILD-TYPE 75 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     14    6
  17Q GAIN WILD-TYPE   75   22
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               14                 75
  MX                6                 22
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    13  49
  17Q GAIN WILD-TYPE  94 217
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     13   49
  17Q GAIN WILD-TYPE   94  217
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               13                 94
  MALE                 49                217
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                      61
  17Q GAIN WILD-TYPE                                   307
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17Q GAIN MUTATED                                                             1
  17Q GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17Q GAIN MUTATED                                                     0
  17Q GAIN WILD-TYPE                                                   4
D31V8, multiclass
                                                             clus
vv                                                            17Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     61
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            17Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      307
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D31V9, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    12  50
  17Q GAIN WILD-TYPE  62 249
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     12   50
  17Q GAIN WILD-TYPE   62  249
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                12                 62
  YES               50                249
D31V10, continuous
D31V11, continuous
D31V12, continuous

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    47  36
  18P GAIN WILD-TYPE 183 102
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                83                285 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                36                102 
$`18P GAIN MUTATED`
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       13.64        23.74        17.10        53.75        57.44        21.17 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        2.07        12.99         3.72        95.05         9.04         4.60 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7870 TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 
       10.19        17.59        37.87         0.16        20.15        15.19 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-6012 TCGA-CN-6020 
       12.99        17.79         8.28        11.84        12.20         3.19 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-A641 TCGA-CQ-5332 TCGA-CQ-6227 
        6.61         7.36         1.38        12.07        10.42         4.21 
TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-6493 TCGA-CR-7364 
       16.70        11.77        58.42        11.34         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7390 TCGA-CR-7399 TCGA-CR-7401 
       39.12         3.42        24.95        29.82         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5441 
       29.92        48.36       129.21       108.33       107.51        94.85 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6935 
       86.83        60.49        43.23        21.04         9.57         9.70 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 
       11.24        12.03        15.06        30.05         4.14         5.23 
TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 
        1.84        10.75        31.33        18.97        11.87         2.10 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7434 TCGA-CV-7435 
       57.47        17.82        22.85         0.07         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7590 
       16.60        21.99         3.45         4.18        18.02        25.48 
TCGA-DQ-7595 TCGA-H7-8502 TCGA-IQ-A61G TCGA-IQ-A61K TCGA-P3-A5Q6 
       10.65         4.34        11.84         5.29        15.75 

$`18P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5152 
       15.16         9.30        37.28         9.07         8.15        42.31 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 
       57.90        23.84        20.48         6.21        14.79         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7864 
        7.82         6.12         4.37        18.31        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        14.04        14.33        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
        6.31        23.70        15.95         4.67         6.38         5.13 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       22.78        21.11        21.11        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       35.67        13.05        16.04        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       35.54        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.01        14.73        13.94        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6989 
       14.24         1.48        12.85         9.07        13.94         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 
       14.70        17.26        15.88         5.75        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35        13.25        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       33.07        43.00        29.59        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       12.46        11.51        15.75        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.06        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
        7.10         5.13       139.40        17.16        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       17.95        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 
       23.05        48.59         7.07        40.96        62.43        90.08 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
      126.08        19.79        42.35         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        71.21       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
        4.96        47.97        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67         0.46        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE 
       16.27        84.49        19.73         6.38         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.42        35.54        16.96        33.86 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        20.42         9.83        12.13        12.10 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11         0.43         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.20         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.30        13.51 
TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       14.47        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.65         8.32        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.07               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            142.49             210.94 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             13.64              16.04 
[1] "0.1 - 142.5 (13.6)" "0.1 - 210.9 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18P GAIN MUTATED         3        8        13        43         2
  18P GAIN WILD-TYPE      21       50        46       131         4
D32V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  18P GAIN MUTATED    5 17 21 27
  18P GAIN WILD-TYPE 32 78 55 91
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                5                 32
  T2               17                 78
  T3               21                 55
  T4               27                 91
                    vv
clus                  N0  N1  N2  N3
  18P GAIN MUTATED    21   9  32   2
  18P GAIN WILD-TYPE 104  36  85   3
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               21                104
  N1                9                 36
  N2               32                 85
  N3                2                  3
D32V6, binary
                    cls
clus                  0  1
  18P GAIN MUTATED   15  4
  18P GAIN WILD-TYPE 74 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     15    4
  18P GAIN WILD-TYPE   74   24
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               15                 74
  MX                4                 24
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    10  74
  18P GAIN WILD-TYPE  97 192
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     10   74
  18P GAIN WILD-TYPE   97  192
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               10                 97
  MALE                 74                192
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                      84
  18P GAIN WILD-TYPE                                   284
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18P GAIN MUTATED                                                             0
  18P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18P GAIN MUTATED                                                     0
  18P GAIN WILD-TYPE                                                   4
D32V8, multiclass
                                                             clus
vv                                                            18P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     84
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            18P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      284
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D32V9, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    15  69
  18P GAIN WILD-TYPE  59 230
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     15   69
  18P GAIN WILD-TYPE   59  230
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                15                 59
  YES               69                230
D32V10, continuous
D32V11, continuous
D32V12, continuous

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    20  14
  18Q GAIN WILD-TYPE 210 124
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                34                334 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                124 
$`18Q GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 
       23.74        17.10        57.44         2.07        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7870 TCGA-CN-4736 TCGA-CN-6012 TCGA-CN-6020 
       18.31        10.19        37.87        12.99        12.20         3.19 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 
        7.36         1.38        58.42        11.34        47.34         3.42 
TCGA-CR-7372 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-6433 
       24.95        35.41        48.36       129.21       108.33        21.04 
TCGA-CV-6441 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7103 TCGA-CV-7406 
        9.57        15.06        30.05         4.14        52.31        57.47 
TCGA-CV-7415 TCGA-CV-7421 TCGA-DQ-7590 TCGA-P3-A5Q6 
       22.85         0.07        25.48        15.75 

$`18Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       42.31        57.90        23.84        20.48        53.75         6.21 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       21.17        14.79        12.99         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        6.12         9.04         4.37        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       20.98        14.04        14.33        71.05        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13         6.31        23.70        15.95         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.63        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       16.04        16.83         8.58        12.39        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.01        14.73        13.94        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
       14.24         1.48        12.85         9.07         6.61        13.94 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        1.51        14.70        17.26        15.88         5.75        12.07 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        54.54        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       43.00        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       40.90        35.84         3.06        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       29.92       139.40        17.16        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        23.05        86.83        48.59        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96        62.43        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        12.03        42.35         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        9.01         5.23         1.84        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.82       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
      142.49        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.45         4.18         3.68         3.42        58.42        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       16.96        33.86        18.02        14.04        18.90        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       16.11         0.43         0.49         3.02        19.20         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
       14.47         5.29        11.54        11.84         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 
        1.12        12.89         1.84         3.65         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        54.31        23.70        10.85 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.07               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            129.21             210.94 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            19.675             15.175 
[1] "0.1 - 129.2 (19.7)" "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18Q GAIN MUTATED         2        2         6        16         0
  18Q GAIN WILD-TYPE      22       56        53       158         6
D33V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED     4   6   6  11
  18Q GAIN WILD-TYPE  33  89  70 107
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                4                 33
  T2                6                 89
  T3                6                 70
  T4               11                107
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED     9   4  11   0
  18Q GAIN WILD-TYPE 116  41 106   5
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                9                116
  N1                4                 41
  N2               11                106
  N3                0                  5
D33V6, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    5  1
  18Q GAIN WILD-TYPE 84 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5    1
  18Q GAIN WILD-TYPE   84   27
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                5                 84
  MX                1                 27
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     2  32
  18Q GAIN WILD-TYPE 105 234
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   32
  18Q GAIN WILD-TYPE  105  234
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                2                105
  MALE                 32                234
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                      34
  18Q GAIN WILD-TYPE                                   334
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18Q GAIN MUTATED                                                             0
  18Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18Q GAIN MUTATED                                                     0
  18Q GAIN WILD-TYPE                                                   4
D33V8, multiclass
                                                             clus
vv                                                            18Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     34
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            18Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      334
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D33V9, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     6  28
  18Q GAIN WILD-TYPE  68 271
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      6   28
  18Q GAIN WILD-TYPE   68  271
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 6                 68
  YES               28                271
D33V10, continuous
D33V11, continuous
D33V12, continuous

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    27   8
  19P GAIN WILD-TYPE 203 130
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                35                333 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 8                130 
$`19P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7861 TCGA-BB-7871 TCGA-BB-8601 
       57.44        95.05         4.60        10.19        14.04        20.52 
TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-A63V TCGA-CN-A641 
        9.07        13.94         7.36         5.82        15.88        12.07 
TCGA-CQ-5323 TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7389 TCGA-CR-7404 
       48.16        58.42         7.66        12.46        12.89        48.36 
TCGA-CV-5431 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-7101 TCGA-CV-7235 
       17.16       107.51        76.47        60.49         5.23        56.68 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7261 TCGA-CV-7415 TCGA-CX-7219 TCGA-F7-8298 
       26.20        18.97        36.13        22.85        27.22        16.11 
TCGA-F7-A50J TCGA-F7-A623 TCGA-IQ-A61K TCGA-MT-A67G TCGA-P3-A5Q6 
       19.20         0.20         5.29         3.65        15.75 

$`19P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         6.21        21.17        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 
        5.65         5.95         7.82         6.12         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05         0.16         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        12.20        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6988 TCGA-CN-6992 
        1.48        12.85         3.19         6.61         1.38         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       17.26         5.75        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        43.00        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       11.64        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 
        5.13         5.92        35.41        29.92       139.40       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 
      108.33        47.28        19.20        17.95        94.85        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        21.04        62.43         9.57 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        9.01         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       10.75       114.94         4.73        47.47        36.00        31.33 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        6.38        21.99         5.98        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.11         5.03        18.64         3.45         4.18         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.42        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        11.18        18.54         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        3.02         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
       34.75        15.95         4.01        14.50        19.30        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
       13.51        14.47        11.54        11.84         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        1.12        12.89         1.84         3.65         8.32        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.20               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            107.51             210.94 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             16.11              15.19 
[1] "0.2 - 107.5 (16.1)" "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D34V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19P GAIN MUTATED         3        3         5        19         0
  19P GAIN WILD-TYPE      21       55        54       155         6
D34V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED     6   5   8  11
  19P GAIN WILD-TYPE  31  90  68 107
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                6                 31
  T2                5                 90
  T3                8                 68
  T4               11                107
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    10   3  16   0
  19P GAIN WILD-TYPE 115  42 101   5
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               10                115
  N1                3                 42
  N2               16                101
  N3                0                  5
D34V6, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    8  5
  19P GAIN WILD-TYPE 81 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      8    5
  19P GAIN WILD-TYPE   81   23
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                8                 81
  MX                5                 23
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     7  28
  19P GAIN WILD-TYPE 100 238
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   28
  19P GAIN WILD-TYPE  100  238
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                7                100
  MALE                 28                238
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                      35
  19P GAIN WILD-TYPE                                   333
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19P GAIN MUTATED                                                             0
  19P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19P GAIN MUTATED                                                     0
  19P GAIN WILD-TYPE                                                   4
D34V8, multiclass
                                                             clus
vv                                                            19P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     35
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            19P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      333
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D34V9, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     7  28
  19P GAIN WILD-TYPE  67 271
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   28
  19P GAIN WILD-TYPE   67  271
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 7                 67
  YES               28                271
D34V10, continuous
D34V11, continuous
D34V12, continuous

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    36  15
  19Q GAIN WILD-TYPE 194 123
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                51                317 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                15                123 
$`19Q GAIN MUTATED`
TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-7269 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7861 
       57.90        57.44         7.76        95.05         4.60        10.19 
TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-A63V TCGA-CN-A641 
       12.20         9.07        13.94         7.36        15.88        12.07 
TCGA-CQ-5324 TCGA-CQ-5330 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-6467 TCGA-CR-6487 
       39.68        29.46        34.75        13.25        58.42         7.66 
TCGA-CR-6488 TCGA-CR-7367 TCGA-CR-7389 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5440 
       12.46        47.34        12.89        48.36        17.16       107.51 
TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6937 TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7243 
       76.47        60.49        20.52         5.23        56.68        31.33 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7415 
       18.97        11.87        57.47        35.54        17.82        22.85 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7219 TCGA-D6-6825 TCGA-DQ-7592 TCGA-F7-8298 
      142.49        16.60        27.22        16.11         9.83        16.11 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A623 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-A61G 
        3.02        19.20         0.20        34.75         4.01        11.84 
TCGA-IQ-A61K TCGA-MT-A67G TCGA-P3-A5Q5 
        5.29         3.65        29.92 

$`19Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        42.31        17.10        23.84        20.48        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.21        21.17        14.79         2.07        12.99         3.72 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        7.82         6.12         9.04         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        13.94        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
       12.85         3.19         6.61         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       17.26         5.75        48.16        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.35        32.88        32.35         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.34        11.64        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      139.40       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       94.85        91.50        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       86.83        48.59         7.07        43.23        40.96        21.04 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       62.43         9.57        90.08         2.14         9.70         5.46 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
       26.20        17.10        95.34         4.96        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       36.13        18.41       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
       19.73         7.13         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.39        10.55         7.76        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
       23.01         2.53         5.03        18.64         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.42        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       18.02        14.04        18.90        25.48        20.42        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G 
       12.10        10.65        11.18        18.54         0.43         0.49 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 
        1.45         0.99         0.99         1.61         0.92        15.95 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O 
       14.50        19.30        13.51        14.47        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        15.75        54.31        23.70        10.85 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.20               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            142.49             210.94 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             17.16              15.06 
[1] "0.2 - 142.5 (17.2)" "0.1 - 210.9 (15.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D35V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19Q GAIN MUTATED         3        9         8        22         1
  19Q GAIN WILD-TYPE      21       49        51       152         5
D35V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED     6  15  11  12
  19Q GAIN WILD-TYPE  31  80  65 106
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                6                 31
  T2               15                 80
  T3               11                 65
  T4               12                106
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED    16   5  18   1
  19Q GAIN WILD-TYPE 109  40  99   4
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               16                109
  N1                5                 40
  N2               18                 99
  N3                1                  4
D35V6, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED   10  5
  19Q GAIN WILD-TYPE 79 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     10    5
  19Q GAIN WILD-TYPE   79   23
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               10                 79
  MX                5                 23
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    10  41
  19Q GAIN WILD-TYPE  97 225
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     10   41
  19Q GAIN WILD-TYPE   97  225
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               10                 97
  MALE                 41                225
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                      50
  19Q GAIN WILD-TYPE                                   318
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19Q GAIN MUTATED                                                             0
  19Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19Q GAIN MUTATED                                                     1
  19Q GAIN WILD-TYPE                                                   3
D35V8, multiclass
                                                             clus
vv                                                            19Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     50
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            19Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      318
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D35V9, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    10  41
  19Q GAIN WILD-TYPE  64 258
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     10   41
  19Q GAIN WILD-TYPE   64  258
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                10                 64
  YES               41                258
D35V10, continuous
D35V11, continuous
D35V12, continuous

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    84  49
  20P GAIN WILD-TYPE 146  89
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               133                235 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                49                 89 
$`20P GAIN MUTATED`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5559 TCGA-BA-6868 
        9.07         8.15        23.74        23.84        57.44         6.21 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6DB TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7861 
       12.99         7.76         7.10         9.04         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7872 TCGA-C9-A47Z TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 
       17.59        14.33         0.16        20.15        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       35.67        13.05        16.83        12.39        35.54         8.28 
TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6022 
       11.84         9.01        12.20        14.24         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-A63U TCGA-CQ-5329 
       13.94         7.36         1.38         5.82        17.26        46.75 
TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 
       29.46        32.35        34.75        32.35        13.25        26.76 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 
       45.27        16.70        29.59        84.23        11.77        58.42 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 
       11.64        12.46        39.12        47.34         3.42        24.95 
TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7399 
       29.23         9.17        19.92        12.89        31.10         5.92 
TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 
       35.41       139.40       108.33        47.28        19.20        76.47 
TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 
       80.12        13.35        23.05        86.83        60.49         7.07 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6945 
       40.96        90.08        20.52        21.86        26.43        12.03 
TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7090 
       42.35        65.82         7.13         8.38         4.14       126.12 
TCGA-CV-7095 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 
       18.81        21.76        71.21        10.75        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7416 TCGA-CV-7421 
       26.20        17.10         2.10        18.41        25.02         0.07 
TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JE TCGA-CX-7082 
      100.54         3.48        16.60         6.38        24.66        10.39 
TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6825 TCGA-D6-8569 TCGA-D6-A4ZB 
        7.76        25.41         9.60        16.11         4.18         3.42 
TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-A50J TCGA-F7-A61S 
       58.42        14.04        20.42         9.83        19.20         0.10 
TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8314 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
        1.87         0.16         1.45        14.50        19.30        11.84 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 
        5.29        11.54        12.89         1.84         3.65        15.75 
TCGA-P3-A5QA 
       54.31 

$`20P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5152 TCGA-BA-5153 
       15.16         9.30        13.64        37.28        42.31        57.90 
TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       17.10        20.48        53.75        21.17        14.79         2.07 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE 
        3.72        29.42        16.83        11.54         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
        7.82         6.12        95.05         4.37        18.31        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 
       22.59        20.98        37.87        14.04        71.05        20.52 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13         6.31        23.70        15.95         4.67         6.38 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5364 TCGA-CN-5365 
        5.13        21.11        16.04         8.58        16.21        11.54 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52        22.45        14.73        13.94 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6992 
       10.36        14.24         1.48        12.85         9.07         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
        2.93        54.54        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7065 
       28.60        32.88         4.21        14.96        48.03        33.07 
TCGA-CQ-7068 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       43.00        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       10.22        11.34         7.66        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7376 
       47.18        40.90        35.84         3.06         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       34.06        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       29.82        30.02        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 
        5.13        29.92        48.36        17.16       129.21        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-5979 
      107.51        94.85        91.50        17.06        48.59        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43         9.57         2.14         9.70         5.46 
TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
        4.70        11.24       126.08        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
        6.08        53.92        10.98        28.31         2.50        64.80 
TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
      111.12        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.89       114.94        56.68         4.73        47.47 
TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
        0.46        22.85        25.94        34.09        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
      142.49        21.99         5.98        10.55        27.22        13.25 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 
       23.01         2.53         5.03        18.64         3.45         3.68 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        18.02        18.90        25.48 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        0.43         0.49         3.02        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
        0.20        13.38         4.34         0.07         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.81         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S 
       15.95         4.01        13.51        14.47        11.84         7.33 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE 
        0.46         1.12         3.65         8.32        29.92        23.70 
TCGA-P3-A5QF 
       10.85 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            139.40             210.94 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             16.60              15.16 
[1] "0.1 - 139.4 (16.6)" "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20P GAIN MUTATED        11       18        24        62         4
  20P GAIN WILD-TYPE      13       40        35       112         2
D36V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  20P GAIN MUTATED   16 31 27 46
  20P GAIN WILD-TYPE 21 64 49 72
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               16                 21
  T2               31                 64
  T3               27                 49
  T4               46                 72
                    vv
clus                 N0 N1 N2 N3
  20P GAIN MUTATED   41 21 42  3
  20P GAIN WILD-TYPE 84 24 75  2
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               41                 84
  N1               21                 24
  N2               42                 75
  N3                3                  2
D36V6, binary
                    cls
clus                  0  1
  20P GAIN MUTATED   35  8
  20P GAIN WILD-TYPE 54 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     35    8
  20P GAIN WILD-TYPE   54   20
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               35                 54
  MX                8                 20
D36V7, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    40  94
  20P GAIN WILD-TYPE  67 172
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     40   94
  20P GAIN WILD-TYPE   67  172
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               40                 67
  MALE                 94                172
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                     133
  20P GAIN WILD-TYPE                                   235
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20P GAIN MUTATED                                                             0
  20P GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20P GAIN MUTATED                                                     1
  20P GAIN WILD-TYPE                                                   3
D36V8, multiclass
                                                             clus
vv                                                            20P GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    133
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            20P GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      235
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D36V9, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    33 101
  20P GAIN WILD-TYPE  41 198
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     33  101
  20P GAIN WILD-TYPE   41  198
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                33                 41
  YES              101                198
D36V10, continuous
D36V11, continuous
D36V12, continuous

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    87  56
  20Q GAIN WILD-TYPE 143  82
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               143                225 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                56                 82 
$`20Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-6868 
        9.30         9.07         8.15        23.74        23.84         6.21 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BB-4225 TCGA-BB-7861 
       12.99         7.76        29.42         7.10         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7872 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4728 
       17.59        22.59        14.33         0.16        15.95        20.15 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       15.19        22.78        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5359 
       34.68        26.63        35.67        13.05        16.83        12.39 
TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.28        11.84         9.01        13.94        12.20        14.24 
TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        1.48         6.61        13.94         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A63U TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 
        3.91         3.68        17.26        46.75        29.46        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7067 
       34.75        32.35        13.25        26.76        45.27        16.70 
TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6484 
       29.59        11.77        58.42        18.51        16.90        11.64 
TCGA-CR-6488 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7373 
       12.46         9.27        39.12        47.34        24.95        29.23 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7401 
        9.17        34.06        19.92        12.89        31.10        35.41 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 
      139.40       129.21       108.33        47.28        19.20        76.47 
TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6933 
       80.12        86.83        60.49         7.07        40.96        90.08 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
        5.46        20.52        26.43        12.03        42.35        30.05 
TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 
       65.82         7.13         8.38        28.31         4.14       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7242 
       18.81        12.66        21.76        71.21        10.75        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7409 
       31.33        26.20        17.10         2.10        18.41        17.82 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-7438 
       25.02         0.07       100.54         3.48        16.60         6.38 
TCGA-CV-A6JE TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-8569 
       24.66         7.76        25.41        23.01        16.11         4.18 
TCGA-DQ-5624 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-A50J 
       58.42        18.02        14.04        18.90         9.83        19.20 
TCGA-F7-A61S TCGA-F7-A623 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8314 TCGA-IQ-7632 
        0.10         0.20         1.87         0.16         1.45        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X 
       19.30        11.84         5.29        11.54         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
       12.89         1.84         3.65        15.75        54.31 

$`20Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 
       15.16        13.64        37.28        42.31        57.90        17.10 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       20.48        53.75        57.44        21.17        14.79         2.07 
TCGA-BA-6873 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
        3.72        16.83        11.54         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
        6.12        95.05         9.04         4.37        18.31        13.87 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 
       20.98        37.87        14.04        71.05        20.52         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4735 
        6.31        23.70         4.67         6.38         5.13        21.11 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 
       16.04         8.58        35.54        16.21        11.54        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 TCGA-CN-6017 
       12.49         8.52        22.45        14.73        10.36        14.24 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 
       12.85         3.19         9.07         2.73         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        14.70        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68        21.50         2.93        54.54        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6228 
       11.21         4.21        28.60        32.88         4.21        14.96 
TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       48.03        33.07        43.00        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       26.24        50.01        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.34         7.66        11.51        15.75 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 
       47.18        40.90        35.84         3.42         3.06         0.99 
TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       31.96        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       29.82        30.02        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 
        5.13         5.92        29.92        48.36        17.16        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
      107.51        94.85        91.50        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       48.59        43.23        21.04        62.43         9.57         2.14 
TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        9.70         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-7089 
       15.06         6.08        53.92        10.98         2.50        64.80 
TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
      111.12         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 
       12.89       114.94        56.68         4.73        47.47        18.97 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 
       95.34         4.96        11.87        47.97        36.13        57.47 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09        14.86        56.48       156.49        54.90 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7440 
       16.27        84.49        19.73         7.13       142.49        21.99 
TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
        5.98        10.39        10.55        27.22        13.25         9.60 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        2.53         5.03        18.64         3.45         3.68         3.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       35.54        16.96        33.86        25.48        20.42        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        0.49         3.02        12.62         0.46         0.43        13.38 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 
        4.34         0.07         0.82         1.02         1.81         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67F TCGA-MZ-A6I9 
       13.51        14.47        11.84         7.33         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        23.70        10.85 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            139.40             210.94 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             16.70              14.96 
[1] "0.1 - 139.4 (16.7)" "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20Q GAIN MUTATED        12       21        24        67         5
  20Q GAIN WILD-TYPE      12       37        35       107         1
D37V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  20Q GAIN MUTATED   19 33 28 50
  20Q GAIN WILD-TYPE 18 62 48 68
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               19                 18
  T2               33                 62
  T3               28                 48
  T4               50                 68
                    vv
clus                 N0 N1 N2 N3
  20Q GAIN MUTATED   47 20 45  4
  20Q GAIN WILD-TYPE 78 25 72  1
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               47                 78
  N1               20                 25
  N2               45                 72
  N3                4                  1
D37V6, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   38  9
  20Q GAIN WILD-TYPE 51 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     38    9
  20Q GAIN WILD-TYPE   51   19
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               38                 51
  MX                9                 19
D37V7, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    42 102
  20Q GAIN WILD-TYPE  65 164
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     42  102
  20Q GAIN WILD-TYPE   65  164
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               42                 65
  MALE                102                164
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                     143
  20Q GAIN WILD-TYPE                                   225
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20Q GAIN MUTATED                                                             0
  20Q GAIN WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20Q GAIN MUTATED                                                     1
  20Q GAIN WILD-TYPE                                                   3
D37V8, multiclass
                                                             clus
vv                                                            20Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    143
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            20Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      225
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D37V9, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    35 109
  20Q GAIN WILD-TYPE  39 190
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     35  109
  20Q GAIN WILD-TYPE   39  190
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                35                 39
  YES              109                190
D37V10, continuous
D37V11, continuous
D37V12, continuous

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    16   9
  21Q GAIN WILD-TYPE 214 129
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                25                343 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                129 
$`21Q GAIN MUTATED`
TCGA-BA-6873 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4740 TCGA-CN-5356 
        3.72         4.60         6.38         5.13        26.63        16.83 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-A63U TCGA-CR-6467 TCGA-CR-6478 
        7.36         2.73         3.68        17.26        58.42         6.02 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5441 TCGA-CV-6940 TCGA-CV-6945 
       29.92       139.40       129.21        94.85        26.43        12.03 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7433 TCGA-DQ-7591 TCGA-HD-8224 TCGA-HD-8314 
        0.46        22.85        19.73        20.42         1.81         1.45 
TCGA-IQ-A61O 
       11.84 

$`21Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         6.21        21.17        14.79         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
       12.99         7.76        29.42        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.65         5.95         7.82         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       20.15        15.19        22.78        21.11        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       17.79        14.33        34.68        35.67        13.05        16.04 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        12.20        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.19         9.07         6.61        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         3.91         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       14.70        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 
       39.52        34.52        36.99        18.51        16.90        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
        5.92        35.41        48.36        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95       107.51        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        21.04        62.43         9.57 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 
       21.86        11.24       126.08        19.79        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 
       17.82       210.94        89.33         9.67        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        16.27        84.49         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.01         2.53        16.11         5.03        18.64         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.68         3.42        58.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 
       33.86        18.02        14.04        18.90        25.48         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8634 TCGA-HD-8635 
        0.07         0.16         0.82         1.02         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       19.30        11.84        13.51        14.47         5.29        11.54 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         8.32        29.92        15.75        54.31        23.70 
TCGA-P3-A5QF 
       10.85 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.46               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            139.40             210.94 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             12.03              15.88 
[1] "0.5 - 139.4 (12.0)" "0.1 - 210.9 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  21Q GAIN MUTATED         0        0         6        15         0
  21Q GAIN WILD-TYPE      24       58        53       159         6
D38V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     1   4   5  11
  21Q GAIN WILD-TYPE  36  91  71 107
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                1                 36
  T2                4                 91
  T3                5                 71
  T4               11                107
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED     5   4  12   0
  21Q GAIN WILD-TYPE 120  41 105   5
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                5                120
  N1                4                 41
  N2               12                105
  N3                0                  5
D38V6, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    3  2
  21Q GAIN WILD-TYPE 86 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      3    2
  21Q GAIN WILD-TYPE   86   26
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0                3                 86
  MX                2                 26
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     3  22
  21Q GAIN WILD-TYPE 104 244
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      3   22
  21Q GAIN WILD-TYPE  104  244
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                3                104
  MALE                 22                244
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                      23
  21Q GAIN WILD-TYPE                                   345
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  21Q GAIN MUTATED                                                             1
  21Q GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  21Q GAIN MUTATED                                                     1
  21Q GAIN WILD-TYPE                                                   3
D38V8, multiclass
                                                             clus
vv                                                            21Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     23
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            21Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      345
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D38V9, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     5  20
  21Q GAIN WILD-TYPE  69 279
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      5   20
  21Q GAIN WILD-TYPE   69  279
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 5                 69
  YES               20                279
D38V10, continuous
D38V11, continuous
D38V12, continuous

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    44  37
  22Q GAIN WILD-TYPE 186 101
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                81                287 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                37                101 
$`22Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-7269 TCGA-BA-A6DA 
       15.16         9.07        17.10        20.48         7.76        11.54 
TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4728 TCGA-CN-4737 
       37.87        71.05        20.52         0.13        20.15        17.79 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 
       13.05        16.83        11.57        14.73        12.20        10.36 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6994 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6220 
        7.36         5.82         3.91         2.93        10.42        32.35 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7069 
       32.88        32.35        13.25        26.76        16.70        29.59 
TCGA-CR-6471 TCGA-CR-6474 TCGA-CR-6482 TCGA-CR-7365 TCGA-CR-7371 TCGA-CR-7383 
       39.52        18.51        11.34        39.12         3.06        17.13 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5432 
       12.89        29.82         7.10        35.41       139.40       129.21 
TCGA-CV-5434 TCGA-CV-5970 TCGA-CV-5978 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 
      108.33        13.35         7.07        90.08        26.43        11.24 
TCGA-CV-6950 TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7245 
       15.06       126.12         5.23         1.84        71.21        26.20 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7422 
       17.10        95.34        47.97        36.13        35.54        34.09 
TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 
       14.86         3.48        19.73         7.13        16.60        21.99 
TCGA-CV-A6JE TCGA-CX-7219 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 
       24.66        27.22         3.42        35.54        16.96        18.90 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 TCGA-IQ-A61H TCGA-IQ-A61L TCGA-IQ-A61O 
        0.16         1.02         0.99        13.51        11.54        11.84 
TCGA-MT-A51X TCGA-P3-A5Q6 TCGA-P3-A5QF 
        1.12        15.75        10.85 

$`22Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.90        23.84        53.75        57.44         6.21        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 
       14.79         2.07        12.99         3.72        29.42        16.83 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.65         5.95         7.82         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A47Z 
       13.87        22.59        20.98        14.04        14.33         0.16 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
        6.31        23.70        15.95         4.67         6.38         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       15.19        22.78        21.11        21.11        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       34.68        26.63        35.67        16.04         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
       35.54         8.28        16.21        11.54        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6017 
        8.52        22.45         9.01        13.94        14.24        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.19         9.07         6.61        13.94 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         2.73         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       14.70        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6228 
       11.21         4.21        28.60        34.75         4.21        14.96 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       48.03        45.27        33.07        43.00        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 
       54.64        37.87        26.24        58.42        50.01        34.52 
TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 
       36.99        16.90         6.02        11.90        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.42        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        27.02        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         5.13         5.92        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
       17.16        47.28        19.20        17.95       107.51        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       76.47        91.50        80.12        17.06        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49        43.23        40.96        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        9.57         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       21.86       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       12.66         7.99         9.01        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 
       31.33        18.97         4.96        11.87         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7425 
       22.85        25.02        25.94         0.07       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7438 
      156.49        54.90        16.27        84.49       142.49         6.38 
TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
        5.98        10.39        10.55         7.76        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 
        3.45         4.18         3.68        58.42        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        25.48        20.42         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
       10.65        11.18        18.54        16.11         0.43         0.49 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        3.02        19.20         0.10        12.62         0.46         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 
        0.20        13.38         1.87         4.34         0.07         0.82 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.81         1.45         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61J 
       15.95         4.01        14.50        19.30        11.84        14.47 
TCGA-IQ-A61K TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        5.29         7.33         0.46        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         8.32        29.92        54.31        23.70 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.13               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            139.40             210.94 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             16.70              15.19 
[1] "0.1 - 139.4 (16.7)" "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
[1] "hr=" "1.2"
D39V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  22Q GAIN MUTATED         5       11        14        43         1
  22Q GAIN WILD-TYPE      19       47        45       131         5
D39V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  22Q GAIN MUTATED    7 20 19 29
  22Q GAIN WILD-TYPE 30 75 57 89
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                7                 30
  T2               20                 75
  T3               19                 57
  T4               29                 89
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED    25  10  31   1
  22Q GAIN WILD-TYPE 100  35  86   4
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0               25                100
  N1               10                 35
  N2               31                 86
  N3                1                  4
D39V6, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED   18  7
  22Q GAIN WILD-TYPE 71 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     18    7
  22Q GAIN WILD-TYPE   71   21
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               18                 71
  MX                7                 21
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    20  62
  22Q GAIN WILD-TYPE  87 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     20   62
  22Q GAIN WILD-TYPE   87  204
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               20                 87
  MALE                 62                204
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                      81
  22Q GAIN WILD-TYPE                                   287
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  22Q GAIN MUTATED                                                             1
  22Q GAIN WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  22Q GAIN MUTATED                                                     0
  22Q GAIN WILD-TYPE                                                   4
D39V8, multiclass
                                                             clus
vv                                                            22Q GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     81
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            22Q GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      287
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D39V9, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    19  63
  22Q GAIN WILD-TYPE  55 236
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     19   63
  22Q GAIN WILD-TYPE   55  236
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                19                 55
  YES               63                236
D39V10, continuous
D39V11, continuous
D39V12, continuous

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    34  29
  XQ GAIN WILD-TYPE 196 109
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               305 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               29               109 
$`XQ GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4223 
        9.30        37.28         8.15        12.99         7.76        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-CN-4728 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 
        4.60         4.37        20.15        17.79        26.63        13.05 
TCGA-CN-5359 TCGA-CN-5367 TCGA-CN-6012 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
       12.39        11.57        12.20        13.94         1.38         5.82 
TCGA-CN-A49B TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-6220 TCGA-CQ-6229 TCGA-CR-5247 
       14.70        54.54        46.75        32.35        26.76        11.77 
TCGA-CR-6467 TCGA-CR-6477 TCGA-CR-6493 TCGA-CR-7370 TCGA-CR-7380 TCGA-CV-5434 
       58.42        16.90         9.27         3.42        19.92       108.33 
TCGA-CV-5435 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6936 
       47.28        76.47        80.12        13.35        60.49         5.46 
TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 
       30.05         8.38         1.84        71.21        31.33        26.20 
TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7416 
       95.34        47.97        35.54        17.82        22.85        25.02 
TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-8568 TCGA-DQ-5625 
       16.60         7.76        25.41        23.01         3.45        35.54 
TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-HD-7917 TCGA-HD-A6I0 TCGA-IQ-A61G 
       16.96        18.02         9.83         1.02         0.92        11.84 
TCGA-IQ-A61J TCGA-MT-A51X TCGA-P3-A5Q6 
       14.47         1.12        15.75 

$`XQ GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64         9.07        23.74        42.31        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       17.10        23.84        20.48        53.75        57.44         6.21 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 
       21.17        14.79         2.07         3.72        29.42        16.83 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.65         5.95         7.82         6.12 
TCGA-BB-4224 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        9.04        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
        6.38         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 
       12.99        14.33        34.68        35.67        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        8.58        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        22.45         9.01        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        9.07         6.61         7.36         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.75         3.29         1.51        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5330 
       12.07        48.16        39.68        21.50         2.93        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 
       34.75        32.35        13.25         4.21        14.96        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        43.00        29.59        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        18.51         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.64         7.66        12.46        11.51        15.75        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 
       29.23         0.99        31.96         9.17        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
       17.16       129.21        19.20        17.95       107.51        94.85 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       91.50        17.06        23.05        86.83        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        21.04        62.43         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 
        6.08        53.92        65.82        10.98         7.13        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       36.00        18.97        17.10         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        57.47       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
       19.73         7.13       142.49         6.38        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       24.66        10.39        10.55        27.22        13.25         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4Z9 
        2.53        16.11         5.03        18.64         4.18         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
        3.42        58.42        33.86        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
       20.42        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       16.11         0.43         0.49         3.02        19.20         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.07         0.16         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.99         1.61        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       14.50        19.30        13.51         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46        12.89         1.84         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        54.31        23.70        10.85 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.92              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           108.33            210.94 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            16.90             15.19 
[1] "0.9 - 108.3 (16.9)" "0.1 - 210.9 (15.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  XQ GAIN MUTATED         1        8         8        36         2
  XQ GAIN WILD-TYPE      23       50        51       138         4
D40V3, multiclass
                   vv
clus                T1 T2 T3 T4
  XQ GAIN MUTATED    2 14 14 25
  XQ GAIN WILD-TYPE 35 81 62 93
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               2                35
  T2              14                81
  T3              14                62
  T4              25                93
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED    15   7  28   1
  XQ GAIN WILD-TYPE 110  38  89   4
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0              15               110
  N1               7                38
  N2              28                89
  N3               1                 4
D40V6, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED   11  4
  XQ GAIN WILD-TYPE 78 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     11    4
  XQ GAIN WILD-TYPE   78   24
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0              11                78
  MX               4                24
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    14  50
  XQ GAIN WILD-TYPE  93 216
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     14   50
  XQ GAIN WILD-TYPE   93  216
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE              14                93
  MALE                50               216
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                      64
  XQ GAIN WILD-TYPE                                   304
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  XQ GAIN MUTATED                                                             0
  XQ GAIN WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  XQ GAIN MUTATED                                                     0
  XQ GAIN WILD-TYPE                                                   4
D40V8, multiclass
                                                             clus
vv                                                            XQ GAIN MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    64
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            XQ GAIN WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     304
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D40V9, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    21  43
  XQ GAIN WILD-TYPE  53 256
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     21   43
  XQ GAIN WILD-TYPE   53  256
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO               21                53
  YES              43               256
D40V10, continuous
D40V11, continuous
D40V12, continuous

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    24  17
  1P LOSS WILD-TYPE 206 121
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               41               327 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               17               121 
$`1P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5152 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-CN-4736 
        9.30        42.31         2.07         7.76        16.83        12.99 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6024 
       16.04        35.54        12.20         1.48         9.07         7.36 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CQ-6225 
        2.73         3.91         3.68         3.29        10.42        13.25 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CV-5432 TCGA-CV-5434 
       39.12         3.42         3.06        24.95       129.21       108.33 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6962 
       17.95       107.51        40.96        26.43        15.06         4.14 
TCGA-CV-7101 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7424 TCGA-D6-6516 TCGA-DQ-7589 
        5.23        47.97        36.13        14.86        25.41        18.90 
TCGA-F7-8489 TCGA-F7-A61W TCGA-HD-8634 TCGA-IQ-A61L TCGA-MZ-A6I9 
        0.43         0.46         0.99        11.54         8.32 

$`1P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90        17.10        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A4IF 
        6.21        21.17        14.79        12.99         3.72        29.42 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.65         5.95         7.82         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 
       15.19        22.78        21.11        21.11        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       34.68        26.63        35.67        13.05        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        22.45         9.01        14.73        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
       14.24        10.36        14.24        12.85         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B 
       13.94         1.38         5.82         3.75         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       17.26        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.90        35.84 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 
      139.40        17.16        47.28        19.20        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.50        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.57        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         2.50        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
      111.12        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.54        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        6.38        21.99         5.98        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        27.22        13.25         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
       16.11         5.03        18.64         3.45         4.18         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.42        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        25.48        20.42         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I 
       10.65        11.18        18.54        16.11         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
       19.20         0.10        12.62         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.81         1.45         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       14.47         5.29        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       12.89         1.84         3.65         3.65        29.92        15.75 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.43              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           129.21            210.94 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            12.20             16.11 
[1] "0.4 - 129.2 (12.2)" "0.1 - 210.9 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D41V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1P LOSS MUTATED         3        4         8        20         0
  1P LOSS WILD-TYPE      21       54        51       154         6
D41V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED     4   8  11  13
  1P LOSS WILD-TYPE  33  87  65 105
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               4                33
  T2               8                87
  T3              11                65
  T4              13               105
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED    16   4  12   0
  1P LOSS WILD-TYPE 109  41 105   5
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              16               109
  N1               4                41
  N2              12               105
  N3               0                 5
D41V6, binary
                   cls
clus                 0  1
  1P LOSS MUTATED   11  1
  1P LOSS WILD-TYPE 78 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     11    1
  1P LOSS WILD-TYPE   78   27
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              11                78
  MX               1                27
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     9  32
  1P LOSS WILD-TYPE  98 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      9   32
  1P LOSS WILD-TYPE   98  234
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               9                98
  MALE                32               234
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                      41
  1P LOSS WILD-TYPE                                   327
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1P LOSS MUTATED                                                             0
  1P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1P LOSS MUTATED                                                     0
  1P LOSS WILD-TYPE                                                   4
D41V8, multiclass
                                                             clus
vv                                                            1P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    41
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            1P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     327
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D41V9, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     7  34
  1P LOSS WILD-TYPE  67 265
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      7   34
  1P LOSS WILD-TYPE   67  265
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                7                67
  YES              34               265
D41V10, continuous
D41V11, continuous
D41V12, continuous

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    16  11
  1Q LOSS WILD-TYPE 214 127
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               27               341 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               11               127 
$`1Q LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5152 TCGA-C9-A47Z TCGA-CN-4736 TCGA-CN-5355 TCGA-CN-6012 
        8.15        42.31         0.16        12.99        16.04        12.20 
TCGA-CN-6018 TCGA-CN-6994 TCGA-CN-6995 TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CQ-6227 
        1.48         3.91         3.68        32.35        13.25         4.21 
TCGA-CR-7365 TCGA-CR-7372 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-6003 
       39.12        24.95       129.21        17.95        94.85        40.96 
TCGA-CV-6950 TCGA-CV-7416 TCGA-CV-7424 TCGA-DQ-7588 TCGA-F7-8489 TCGA-F7-A61W 
       15.06        25.02        14.86        14.04         0.43         0.46 
TCGA-HD-8634 TCGA-IQ-A61L TCGA-MZ-A6I9 
        0.99        11.54         8.32 

$`1Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90        17.10        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.21        21.17        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.83        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13         6.31        23.70        15.95         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       17.79        14.33        34.68        26.63        35.67        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.83         8.58        12.39        35.54         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01        14.73        13.94        14.24        10.36        14.24 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         2.73         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       14.70        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       34.75        32.35        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       139.40        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20       107.51        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        23.05        86.83        48.59        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       43.23        21.04        62.43         9.57        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       23.01         2.53        16.11         5.03        18.64         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.68         3.42        58.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       33.86        18.02        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 
        0.49         3.02        19.20         0.10        12.62         0.43 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.20        13.38         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A633 
        0.82         1.02         1.81         1.45         0.99         1.61 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        0.92        34.75        15.95         4.01        14.50        19.30 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S 
       11.84        13.51        14.47         5.29        11.84         7.33 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.65 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        15.75        54.31        23.70        10.85 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.16              0.07 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           129.21            210.94 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            13.25             16.11 
[1] "0.2 - 129.2 (13.2)" "0.1 - 210.9 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1Q LOSS MUTATED         2        2         5        15         0
  1Q LOSS WILD-TYPE      22       56        54       159         6
D42V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED     3   5   9   8
  1Q LOSS WILD-TYPE  34  90  67 110
D42V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               3                34
  T2               5                90
  T3               9                67
  T4               8               110
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED    12   2   9   0
  1Q LOSS WILD-TYPE 113  43 108   5
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0              12               113
  N1               2                43
  N2               9               108
  N3               0                 5
D42V6, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED    7  1
  1Q LOSS WILD-TYPE 82 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      7    1
  1Q LOSS WILD-TYPE   82   27
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               7                82
  MX               1                27
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     7  20
  1Q LOSS WILD-TYPE 100 246
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      7   20
  1Q LOSS WILD-TYPE  100  246
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               7               100
  MALE                20               246
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                      27
  1Q LOSS WILD-TYPE                                   341
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  1Q LOSS MUTATED                                                             0
  1Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  1Q LOSS MUTATED                                                     0
  1Q LOSS WILD-TYPE                                                   4
D42V8, multiclass
                                                             clus
vv                                                            1Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    27
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            1Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     341
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D42V9, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     5  22
  1Q LOSS WILD-TYPE  69 277
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      5   22
  1Q LOSS WILD-TYPE   69  277
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                5                69
  YES              22               277
D42V10, continuous
D42V11, continuous
D42V12, continuous

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED    16   8
  2P LOSS WILD-TYPE 214 130
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               344 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                8               130 
$`2P LOSS MUTATED`
TCGA-BA-5559 TCGA-BA-6873 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-C9-A47Z 
       57.44         3.72        10.19        17.59        22.59         0.16 
TCGA-CN-6011 TCGA-CN-A49B TCGA-CQ-6218 TCGA-CQ-7064 TCGA-CV-5966 TCGA-CV-5973 
       13.94        14.70        28.60        45.27        17.06        86.83 
TCGA-CV-6003 TCGA-CV-6961 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7432 TCGA-D6-6826 
       40.96         2.50         4.96         2.10        84.49         5.03 
TCGA-DQ-7588 TCGA-F7-A50J TCGA-F7-A623 TCGA-IQ-A61L TCGA-MZ-A6I9 TCGA-P3-A5Q6 
       14.04        19.20         0.20        11.54         8.32        15.75 

$`2P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         6.21        21.17        14.79         2.07        12.99 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.83        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
        4.37        18.31        13.87        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05        20.52         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        3.29         1.51        17.26        15.88         5.75        12.07 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        54.54        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 
       29.46        45.99        10.42        11.21         4.21        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       26.76        48.03        33.07        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.40        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        23.05        48.59        60.49         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.04        62.43         9.57        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       17.10        95.34        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       21.99         5.98        24.66        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11        18.64         3.45         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       58.42        35.54        16.96        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11         0.43         0.49         3.02 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       14.47         5.29        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QA 
       12.89         1.84         3.65         3.65        29.92        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.16              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            86.83            210.94 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            14.37             15.95 
[1] "0.2 - 86.8 (14.4)"  "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D43V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2P LOSS MUTATED         0        3         7        11         0
  2P LOSS WILD-TYPE      24       55        52       163         6
D43V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     2   6   6   7
  2P LOSS WILD-TYPE  35  89  70 111
D43V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               2                35
  T2               6                89
  T3               6                70
  T4               7               111
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED     7   7   7   0
  2P LOSS WILD-TYPE 118  38 110   5
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               7               118
  N1               7                38
  N2               7               110
  N3               0                 5
D43V6, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    5  2
  2P LOSS WILD-TYPE 84 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5    2
  2P LOSS WILD-TYPE   84   26
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               5                84
  MX               2                26
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED    11  13
  2P LOSS WILD-TYPE  96 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     11   13
  2P LOSS WILD-TYPE   96  253
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE              11                96
  MALE                13               253
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                      24
  2P LOSS WILD-TYPE                                   344
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2P LOSS MUTATED                                                             0
  2P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2P LOSS MUTATED                                                     0
  2P LOSS WILD-TYPE                                                   4
D43V8, multiclass
                                                             clus
vv                                                            2P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    24
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     344
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D43V9, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     2  22
  2P LOSS WILD-TYPE  72 277
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2   22
  2P LOSS WILD-TYPE   72  277
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                72
  YES              22               277
D43V10, continuous
D43V11, continuous
D43V12, continuous

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    22  10
  2Q LOSS WILD-TYPE 208 128
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               32               336 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               128 
$`2Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-7861 TCGA-BB-7862 
       42.31        57.44         2.07         3.72        10.19        17.59 
TCGA-BB-7864 TCGA-C9-A47Z TCGA-CN-4736 TCGA-CN-6018 TCGA-CN-6995 TCGA-CN-A49B 
       22.59         0.16        12.99         1.48         3.68        14.70 
TCGA-CQ-5327 TCGA-CQ-7064 TCGA-CR-6472 TCGA-CR-6484 TCGA-CR-7371 TCGA-CR-7399 
       54.54        45.27        34.52        11.64         3.06         5.92 
TCGA-CR-7402 TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6961 TCGA-CV-7252 
       29.92        86.83        40.96        90.08         2.50         4.96 
TCGA-CV-7255 TCGA-D6-6826 TCGA-DQ-7593 TCGA-F7-A50J TCGA-F7-A620 TCGA-IQ-A61L 
        2.10         5.03        12.13        19.20         0.43        11.54 
TCGA-MZ-A6I9 TCGA-P3-A5Q6 
        8.32        15.75 

$`2Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF 
        6.21        21.17        14.79        12.99         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       20.52         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        20.15         5.13        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       21.11        17.79        14.33        34.68        26.63        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05        16.04        16.83         8.58        12.39        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        22.45         9.01        14.73        13.94        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       14.24        10.36        14.24        12.85         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61        13.94         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63V 
        3.91         3.75         3.29         1.51        17.26        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 
        4.21        14.96        26.76        48.03        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       43.00        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.34         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.42        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.13        35.41        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        91.50        80.12        17.06        13.35        23.05 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        9.57         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
       31.33        26.20        18.97        17.10        95.34        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
        7.13       142.49        16.60         6.38        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 
       25.41         9.60        23.01         2.53        16.11        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.45         4.18         3.68         3.42        58.42        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
       20.42         9.83        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V 
       16.11         0.43         0.49         3.02         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.20        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       14.50        19.30        11.84        13.51        14.47         5.29 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.84         7.33         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         3.65        29.92        54.31        23.70        10.85 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.16              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            90.08            210.94 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           11.885            16.075 
[1] "0.2 - 90.1 (11.9)"  "0.1 - 210.9 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2Q LOSS MUTATED         0        2        10        13         0
  2Q LOSS WILD-TYPE      24       56        49       161         6
D44V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     2   5  10   9
  2Q LOSS WILD-TYPE  35  90  66 109
D44V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               2                35
  T2               5                90
  T3              10                66
  T4               9               109
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED     7   9   9   0
  2Q LOSS WILD-TYPE 118  36 108   5
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               7               118
  N1               9                36
  N2               9               108
  N3               0                 5
D44V6, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    9  2
  2Q LOSS WILD-TYPE 80 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      9    2
  2Q LOSS WILD-TYPE   80   26
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               9                80
  MX               2                26
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    15  17
  2Q LOSS WILD-TYPE  92 249
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     15   17
  2Q LOSS WILD-TYPE   92  249
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE              15                92
  MALE                17               249
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                      32
  2Q LOSS WILD-TYPE                                   336
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  2Q LOSS MUTATED                                                             0
  2Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  2Q LOSS MUTATED                                                     0
  2Q LOSS WILD-TYPE                                                   4
D44V8, multiclass
                                                             clus
vv                                                            2Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    32
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            2Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     336
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D44V9, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     2  30
  2Q LOSS WILD-TYPE  72 269
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      2   30
  2Q LOSS WILD-TYPE   72  269
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                2                72
  YES              30               269
D44V10, continuous
D44V11, continuous
D44V12, continuous

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED   123  92
  3P LOSS WILD-TYPE 107  46
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              215               153 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               92                46 
$`3P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5558 
       15.16         9.30        13.64         8.15        17.10        53.75 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 
       21.17        14.79         2.07        12.99         7.76        16.83 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 
       11.54         7.10         5.95         9.04         4.37        17.59 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
       37.87        14.04        14.33        71.05        20.52         0.16 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4736 
       15.95         4.67        20.15         5.13        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 
       17.79        14.33        34.68        26.63        13.05        16.04 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       16.83         8.58        12.39        35.54         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 
       11.54        11.84        11.57        22.45        14.73        13.94 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6024 TCGA-CN-6989 
       12.20        10.36         1.48        12.85         7.36         5.82 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        2.73         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6218 
       17.26        12.07         2.93        29.46        10.42        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.35        32.88        32.35         4.21        14.96        26.76 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       45.27        33.07        16.70        29.59        84.23        11.77 
TCGA-CR-5250 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6482 
       26.24        36.99        16.90         6.02        11.90        11.34 
TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
       11.51         9.27        47.18        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95        29.23         9.17        34.06        19.92 
TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7398 
       17.13        47.01        27.02        12.89        29.82         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       35.41        29.92       139.40       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95       107.51        94.85        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       13.35        86.83        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.57        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       11.24        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       65.82         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.80       111.12        18.81         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7242 
        1.84        12.89        21.76        10.75        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        18.97        17.10         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
        2.10        18.41       210.94         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7429 
       25.94        34.09       100.54        14.86        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-A6JE TCGA-CX-7082 
       16.27        84.49         7.13       142.49        24.66        10.39 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 
        7.76        27.22        25.41         9.60        23.01        16.11 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         3.45         4.18         3.42        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       18.02        14.04        18.90        20.42         9.83        18.54 
TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61W 
       16.11         0.49         3.02        19.20         0.10         0.46 
TCGA-F7-A620 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 
        0.43         4.34         0.07         0.16         1.81         0.99 
TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61L 
        1.61        15.95        11.84        13.51        14.47        11.54 
TCGA-IQ-A61O TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5QA 
       11.84         0.46         1.12         1.84        54.31 

$`3P LOSS WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07        23.74        42.31        57.90        23.84 
TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DD 
       20.48        57.44         6.21         3.72        29.42         5.65 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        7.82         6.12        95.05         4.60        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       13.87        22.59        20.98         0.13         6.31        23.70 
TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4741 TCGA-CN-5369 
        6.38        15.19        22.78        21.11        35.67        12.49 
TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6013 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6021 
        8.52         9.01        14.24        14.24         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-A63V TCGA-CN-A63Y 
        6.61        13.94         1.38         3.91        15.88         5.75 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       48.16        39.68        21.50        54.54        46.75        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-7063 TCGA-CQ-7068 
       11.21         4.21        34.75        13.25        48.03        43.00 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        58.42        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 
       18.51        10.22        11.64         7.66        12.46        15.75 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7385 
       39.12        40.90         0.99        31.96        26.17        32.78 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5971 
        5.92        48.36        17.16        76.47        91.50        23.05 
TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
       60.49        21.04        62.43         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7090 TCGA-CV-7097 
      126.08        19.79        53.92        10.98       126.12        12.66 
TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7243 
       52.31        71.21       114.94        56.68         4.73        31.33 
TCGA-CV-7250 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7411 
       95.34        36.13        57.47        35.54        17.82        89.33 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7433 TCGA-CV-7437 
       22.85         0.07        56.48       156.49        19.73        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 
        6.38        21.99         5.98        10.55        13.25         2.53 
TCGA-D6-6827 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7590 TCGA-DQ-7593 
       18.64         3.68        58.42        35.54        25.48        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8489 TCGA-F7-A61V TCGA-F7-A623 
       12.10        10.65        11.18         0.43        12.62         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 
       13.38         1.87         0.82         1.02         1.45         0.99 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61K 
        0.92        34.75         4.01        14.50        19.30         5.29 
TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        7.33        12.89         3.65         3.65         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
       15.75        23.70        10.85 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           210.94            156.49 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            14.73             18.51 
[1] "0.1 - 210.9 (14.7)" "0.1 - 156.5 (18.5)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D45V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3P LOSS MUTATED        14       28        34       110         5
  3P LOSS WILD-TYPE      10       30        25        64         1
D45V3, multiclass
                   vv
clus                T1 T2 T3 T4
  3P LOSS MUTATED   18 47 54 74
  3P LOSS WILD-TYPE 19 48 22 44
D45V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              18                19
  T2              47                48
  T3              54                22
  T4              74                44
                   vv
clus                N0 N1 N2 N3
  3P LOSS MUTATED   69 25 79  4
  3P LOSS WILD-TYPE 56 20 38  1
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              69                56
  N1              25                20
  N2              79                38
  N3               4                 1
D45V6, binary
                   cls
clus                 0  1
  3P LOSS MUTATED   50 12
  3P LOSS WILD-TYPE 39 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     50   12
  3P LOSS WILD-TYPE   39   16
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0              50                39
  MX              12                16
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    54 164
  3P LOSS WILD-TYPE  53 102
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     54  164
  3P LOSS WILD-TYPE   53  102
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              54                53
  MALE               164               102
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                     217
  3P LOSS WILD-TYPE                                   151
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3P LOSS MUTATED                                                             1
  3P LOSS WILD-TYPE                                                           0
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3P LOSS MUTATED                                                     0
  3P LOSS WILD-TYPE                                                   4
D45V8, multiclass
                                                             clus
vv                                                            3P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   217
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            3P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     151
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D45V9, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    46 172
  3P LOSS WILD-TYPE  28 127
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     46  172
  3P LOSS WILD-TYPE   28  127
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               46                28
  YES             172               127
D45V10, continuous
D45V11, continuous
D45V12, continuous

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    24  24
  3Q LOSS WILD-TYPE 206 114
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               48               320 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               24               114 
$`3Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6871 TCGA-BA-A6DB TCGA-BB-7870 
       13.64        17.10        53.75         2.07         7.10        37.87 
TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-6010 TCGA-CN-6018 TCGA-CN-6995 TCGA-CN-6997 
       21.11        14.33        14.73         1.48         3.68         3.29 
TCGA-CN-A63U TCGA-CQ-5332 TCGA-CQ-6224 TCGA-CQ-6229 TCGA-CR-6473 TCGA-CR-6493 
       17.26        10.42        32.35        26.76        36.99         9.27 
TCGA-CR-7373 TCGA-CR-7383 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7401 
       29.23        17.13        12.89        29.82         5.13        35.41 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-6441 TCGA-CV-6937 
      108.33        47.28        17.06        48.59         9.57        20.52 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7100 TCGA-CV-7252 
       15.06         6.08         8.38         2.50         9.01         4.96 
TCGA-CV-7255 TCGA-CV-7418 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-A6JE TCGA-D6-6826 
        2.10        25.94        54.90        16.27        24.66         5.03 
TCGA-DQ-7588 TCGA-F7-A620 TCGA-HD-7753 TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X 
       14.04         0.43         0.16        11.54         0.46         1.12 

$`3Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       42.31        57.90        23.84        20.48        57.44         6.21 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       21.17        14.79        12.99         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       16.83        11.54         5.65         5.95         7.82         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       17.59        13.87        22.59        20.98        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 
       22.78        21.11        12.99        17.79        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       35.67        13.05        16.04        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52        22.45         9.01        13.94        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       14.24        10.36        14.24        12.85         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61        13.94         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y 
        3.91         3.75         1.51        14.70        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        13.25         4.21        14.96 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.42         3.06        24.95         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 
        9.17        34.06        19.92        26.17        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       27.02        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.92        29.92        48.36       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21        19.20        17.95       107.51        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 
       91.50        80.12        13.35        23.05        86.83        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        40.96        21.04        62.43        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70         5.46         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6962 
       53.92        65.82        10.98         7.13        28.31         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
       31.33        26.20        18.97        17.10        95.34        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
        6.38        21.99         5.98        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11        18.64         3.45         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       58.42        35.54        16.96        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11         0.43         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 
       19.20         0.10        12.62         0.46         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         4.34         0.07         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
       15.95         4.01        14.50        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67D 
       14.47         5.29        11.84         7.33        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.65         8.32        29.92        15.75        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           108.33            210.94 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           14.185            15.995 
[1] "0.2 - 108.3 (14.2)" "0.1 - 210.9 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D46V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3Q LOSS MUTATED         5        5         5        27         0
  3Q LOSS WILD-TYPE      19       53        54       147         6
D46V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED     6   7  11  18
  3Q LOSS WILD-TYPE  31  88  65 100
D46V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               6                31
  T2               7                88
  T3              11                65
  T4              18               100
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED    21   4  17   0
  3Q LOSS WILD-TYPE 104  41 100   5
D46V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              21               104
  N1               4                41
  N2              17               100
  N3               0                 5
D46V6, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED   10  1
  3Q LOSS WILD-TYPE 79 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     10    1
  3Q LOSS WILD-TYPE   79   27
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              10                79
  MX               1                27
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    11  38
  3Q LOSS WILD-TYPE  96 228
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     11   38
  3Q LOSS WILD-TYPE   96  228
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              11                96
  MALE                38               228
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                      49
  3Q LOSS WILD-TYPE                                   319
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  3Q LOSS MUTATED                                                             0
  3Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  3Q LOSS MUTATED                                                     0
  3Q LOSS WILD-TYPE                                                   4
D46V8, multiclass
                                                             clus
vv                                                            3Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    49
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            3Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     319
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D46V9, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     6  43
  3Q LOSS WILD-TYPE  68 256
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6   43
  3Q LOSS WILD-TYPE   68  256
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                6                68
  YES              43               256
D46V10, continuous
D46V11, continuous
D46V12, continuous

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    88  57
  4P LOSS WILD-TYPE 142  81
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              145               223 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               57                81 
$`4P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BA-A6D8 
       17.10        20.48        14.79         2.07        29.42        16.83 
TCGA-BA-A6DB TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-7861 TCGA-BB-7871 TCGA-BB-8596 
        7.10        95.05         9.04        10.19        14.04        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       20.52         0.16         0.13        23.70        15.95         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4739 TCGA-CN-4742 
       20.15         5.13        15.19        21.11        34.68        13.05 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6010 
       16.04        35.54         8.28        16.21         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6989 
       13.94        12.20         1.48        12.85         9.07         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        2.73         3.91         3.68         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
       17.26        12.07        48.16        32.35        34.75        13.25 
TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6487 
       14.96        45.27        16.70        54.64        34.52         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
       12.46        11.51        39.12        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7388 
        3.06        24.95        29.23         0.99        17.13        27.02 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.82         5.13        48.36        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5978 TCGA-CV-6441 
       47.28        19.20       107.51        80.12         7.07         9.57 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       90.08         2.14         9.70        26.43        11.24       126.08 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-6962 
       42.35        15.06        30.05         7.13         2.50         4.14 
TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7235 TCGA-CV-7236 
      111.12        12.66         5.23        52.31        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7261 
       47.47        36.00        26.20        18.97        17.10        36.13 
TCGA-CV-7407 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 
       35.54         9.67        22.85        25.94        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       14.86        16.27        84.49       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-A4Z9 TCGA-DQ-5629 
       10.39        27.22        25.41        23.01         3.68        16.96 
TCGA-DQ-7589 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V TCGA-H7-8502 
       18.90        16.11         0.49         0.10        12.62         4.34 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-A633 TCGA-IQ-A61E 
        0.16         1.02         1.81         1.45         1.61        19.30 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q6 
       11.84        13.51        14.47         3.65         8.32        15.75 
TCGA-P3-A5QA 
       54.31 

$`4P LOSS WILD-TYPE`
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 
       23.74        42.31        57.90        23.84        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA 
        6.21        21.17        12.99         3.72         7.76        11.54 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4225 TCGA-BB-4227 
        5.65         5.95         7.82         6.12         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       14.33         6.31         6.38        22.78        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 
       17.79        14.33        26.63        35.67        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       12.39        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6022 
       22.45        14.24        10.36        14.24         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6996 TCGA-CN-A63V TCGA-CN-A63Y 
       13.94         7.36         1.38         3.75        15.88         5.75 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 
       32.35         4.21        26.76        48.03        33.07        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        11.77        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6492 TCGA-CR-6493 
       11.90        10.22        11.34        11.64        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       47.18        40.90        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       26.17        32.78        47.01        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       29.92       139.40        17.95        94.85        76.47        91.50 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 
       43.23        40.96        21.04        62.43         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 
        4.70        21.86        19.79        12.03         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7090 
       65.82        10.98         8.38        28.31        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 
       18.81         7.99         9.01         1.84        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7252 
       71.21        10.75       114.94        31.33        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       11.87        47.97         2.10        18.41        57.47        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7425 
      210.94        89.33         0.46        25.02         0.07        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
      156.49        54.90         3.48        19.73         7.13        16.60 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 
        5.98        24.66        10.55         7.76        13.25         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.11         5.03        18.64         3.45         4.18 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.42        58.42        35.54        33.86        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61W 
       11.18        18.54         0.43         3.02        19.20         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 
        0.43         0.20        13.38         1.87         0.07         0.82 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.99         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
       14.50         5.29        11.54        11.84         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QE 
        1.12        12.89         1.84         3.65        29.92        23.70 
TCGA-P3-A5QF 
       10.85 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.10              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           142.49            210.94 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            15.19             15.95 
[1] "0.1 - 142.5 (15.2)" "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4P LOSS MUTATED        12       20        24        72         3
  4P LOSS WILD-TYPE      12       38        35       102         3
D47V3, multiclass
                   vv
clus                T1 T2 T3 T4
  4P LOSS MUTATED   17 32 37 45
  4P LOSS WILD-TYPE 20 63 39 73
D47V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              17                20
  T2              32                63
  T3              37                39
  T4              45                73
                   vv
clus                N0 N1 N2 N3
  4P LOSS MUTATED   49 18 51  3
  4P LOSS WILD-TYPE 76 27 66  2
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              49                76
  N1              18                27
  N2              51                66
  N3               3                 2
D47V6, binary
                   cls
clus                 0  1
  4P LOSS MUTATED   29 14
  4P LOSS WILD-TYPE 60 14
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     29   14
  4P LOSS WILD-TYPE   60   14
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              29                60
  MX              14                14
D47V7, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    38 108
  4P LOSS WILD-TYPE  69 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     38  108
  4P LOSS WILD-TYPE   69  158
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              38                69
  MALE               108               158
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                     145
  4P LOSS WILD-TYPE                                   223
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4P LOSS MUTATED                                                             0
  4P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4P LOSS MUTATED                                                     1
  4P LOSS WILD-TYPE                                                   3
D47V8, multiclass
                                                             clus
vv                                                            4P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   145
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            4P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     223
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D47V9, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    27 119
  4P LOSS WILD-TYPE  47 180
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     27  119
  4P LOSS WILD-TYPE   47  180
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               27                47
  YES             119               180
D47V10, continuous
D47V11, continuous
D47V12, continuous

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    70  41
  4Q LOSS WILD-TYPE 160  97
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              111               257 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               41                97 
$`4Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-6870 TCGA-BA-6873 
        9.30         9.07        17.10        20.48        14.79         3.72 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 
       29.42        16.83         7.10         4.37        37.87        14.04 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 TCGA-CN-4728 
       71.05        20.52         0.16         0.13        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4742 TCGA-CN-5359 
        5.13        21.11        17.79        34.68        13.05        12.39 
TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 
       35.54        14.73        13.94        12.20         1.48        12.85 
TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 
        9.07         5.82         3.91         3.68         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-6225 
       14.70        17.26        48.16        32.35        32.35        13.25 
TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6484 
       14.96        45.27        16.70        54.64        34.52        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7371 
        7.66        12.46        39.12        47.34         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7392 TCGA-CR-7398 
       24.95        29.23         0.99        17.13        31.10         5.13 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 
       48.36        17.16       129.21       108.33        47.28        17.95 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5976 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6935 
      107.51        80.12        48.59        40.96         9.57         9.70 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7091 
       11.24       126.08        65.82         7.13         4.14       111.12 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7247 
       12.66         5.23        52.31        12.89        10.75        18.97 
TCGA-CV-7248 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 
       17.10        36.13        35.54         9.67        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7435 
       34.09       100.54        14.86         3.48        16.27       142.49 
TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-7589 
       21.99         7.76        27.22        23.01        16.96        18.90 
TCGA-DQ-7592 TCGA-F7-A50G TCGA-F7-A61S TCGA-HD-8634 TCGA-IQ-A61H TCGA-IQ-A61J 
        9.83         0.49         0.10         0.99        13.51        14.47 
TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65        15.75        54.31 

$`4Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64        37.28         8.15        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.90        23.84        53.75        57.44         6.21        21.17 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE 
        2.07        12.99         7.76        11.54         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 
       10.19        17.59        13.87        22.59        20.98        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
        6.31        23.70         4.67         6.38        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 
       21.11        12.99        14.33        26.63        35.67        16.04 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       16.83         8.58         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6013 
       11.57        12.49         8.52        22.45         9.01        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       10.36        14.24         3.19         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        1.38         2.73         3.75        15.88         5.75        12.07 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 
       34.75         4.21        26.76        48.03        33.07        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        11.77        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.90        10.22        11.34        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       47.18        40.90        35.84        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       29.82        30.02        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5436 TCGA-CV-5441 
        5.92        35.41        29.92       139.40        19.20        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       76.47        91.50        17.06        13.35        23.05        86.83 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       60.49         7.07        43.23        21.04        62.43        90.08 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       53.92        10.98         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7177 
      126.12        18.81         7.99         9.01         1.84        21.76 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       31.33        26.20        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
        2.10        18.41        57.47        17.82       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.46        22.85         0.07        56.48       156.49        54.90 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JD 
       84.49        19.73         7.13        16.60         6.38         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       24.66        10.39        10.55        13.25        25.41         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.11         5.03        18.64         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68         3.42        58.42        35.54        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       14.04        25.48        20.42        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J 
       11.18        18.54        16.11         0.43         3.02        19.20 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       12.62         0.46         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        1.45         0.99         1.61         0.92        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61K TCGA-IQ-A61L 
        4.01        14.50        19.30        11.84         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.84         7.33         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         8.32        29.92        23.70        10.85 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.10              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           142.49            210.94 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            16.27             15.19 
[1] "0.1 - 142.5 (16.3)" "0.1 - 210.9 (15.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4Q LOSS MUTATED         9       13        20        58         0
  4Q LOSS WILD-TYPE      15       45        39       116         6
D48V3, multiclass
                   vv
clus                T1 T2 T3 T4
  4Q LOSS MUTATED   12 22 30 36
  4Q LOSS WILD-TYPE 25 73 46 82
D48V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              12                25
  T2              22                73
  T3              30                46
  T4              36                82
                   vv
clus                N0 N1 N2 N3
  4Q LOSS MUTATED   33 15 40  0
  4Q LOSS WILD-TYPE 92 30 77  5
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              33                92
  N1              15                30
  N2              40                77
  N3               0                 5
D48V6, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED   22 10
  4Q LOSS WILD-TYPE 67 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     22   10
  4Q LOSS WILD-TYPE   67   18
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              22                67
  MX              10                18
D48V7, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    32  80
  4Q LOSS WILD-TYPE  75 186
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     32   80
  4Q LOSS WILD-TYPE   75  186
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              32                75
  MALE                80               186
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                     112
  4Q LOSS WILD-TYPE                                   256
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  4Q LOSS MUTATED                                                             0
  4Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  4Q LOSS MUTATED                                                     0
  4Q LOSS WILD-TYPE                                                   4
D48V8, multiclass
                                                             clus
vv                                                            4Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   112
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            4Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     256
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D48V9, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    27  85
  4Q LOSS WILD-TYPE  47 214
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     27   85
  4Q LOSS WILD-TYPE   47  214
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               27                47
  YES              85               214
D48V10, continuous
D48V11, continuous
D48V12, continuous

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    20  15
  5P LOSS WILD-TYPE 210 123
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               35               333 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               15               123 
$`5P LOSS MUTATED`
TCGA-BA-6871 TCGA-BA-A6DA TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-7871 TCGA-CN-5355 
        2.07        11.54         5.95         9.04        14.04        16.04 
TCGA-CN-5356 TCGA-CN-6988 TCGA-CN-A63U TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-7069 
       16.83         1.38        17.26         2.93        10.42        29.59 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7372 TCGA-CV-5432 TCGA-CV-5976 TCGA-CV-5977 
        9.27        47.18        24.95       129.21        48.59        60.49 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 
       40.96        90.08        26.43        15.06        30.05         4.14 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7435 
       36.00        17.10        18.41        35.54         0.46       142.49 
TCGA-CV-7438 TCGA-F7-A50G TCGA-IQ-A61G TCGA-IQ-A61H TCGA-P3-A5QF 
        6.38         0.49        11.84        13.51        10.85 

$`5P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         6.21        21.17        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        29.42        16.83         7.10         5.65 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.33        71.05        20.52         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        22.78        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 
       14.33        34.68        26.63        35.67        13.05         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
        1.51        14.70        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       45.27        33.07        16.70        43.00        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       15.75        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.06        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.36       139.40        17.16       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        23.05        86.83         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43         9.57         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       12.03        42.35         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         2.50        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       18.97        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        57.47        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD 
       84.49        19.73         7.13        16.60        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.01         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       35.54        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J 
       11.18        18.54        16.11         0.43         3.02        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61J 
       34.75        15.95         4.01        14.50        19.30        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.65         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
       15.75        54.31        23.70 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.46              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           142.49            210.94 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            16.04             15.75 
[1] "0.5 - 142.5 (16.0)" "0.1 - 210.9 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
[1] "hr=" "1.1"
D49V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5P LOSS MUTATED         2        6         8        18         0
  5P LOSS WILD-TYPE      22       52        51       156         6
D49V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED     2   9  11  12
  5P LOSS WILD-TYPE  35  86  65 106
D49V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               2                35
  T2               9                86
  T3              11                65
  T4              12               106
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    10   4  16   0
  5P LOSS WILD-TYPE 115  41 101   5
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              10               115
  N1               4                41
  N2              16               101
  N3               0                 5
D49V6, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    6  4
  5P LOSS WILD-TYPE 83 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      6    4
  5P LOSS WILD-TYPE   83   24
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0               6                83
  MX               4                24
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    11  24
  5P LOSS WILD-TYPE  96 242
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     11   24
  5P LOSS WILD-TYPE   96  242
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              11                96
  MALE                24               242
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                      35
  5P LOSS WILD-TYPE                                   333
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5P LOSS MUTATED                                                             0
  5P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5P LOSS MUTATED                                                     0
  5P LOSS WILD-TYPE                                                   4
D49V8, multiclass
                                                             clus
vv                                                            5P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    35
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            5P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     333
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D49V9, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     1  34
  5P LOSS WILD-TYPE  73 265
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      1   34
  5P LOSS WILD-TYPE   73  265
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                1                73
  YES              34               265
D49V10, continuous
D49V11, continuous
D49V12, continuous

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    76  41
  5Q LOSS WILD-TYPE 154  97
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              117               251 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               41                97 
$`5Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        9.30         9.07        17.10         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-4217 
        7.76        16.83        11.54         7.10         5.95         6.12 
TCGA-BB-4224 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z 
        9.04        37.87        14.04        71.05        20.52         0.16 
TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4742 
       15.95         6.38         5.13        15.19        22.78        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6012 
       16.04        16.83        35.54        11.84        14.73        12.20 
TCGA-CN-6019 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-A63U TCGA-CN-A641 
       12.85         7.36         1.38         2.73        17.26        12.07 
TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 
        2.93        10.42        13.25         4.21        26.76        45.27 
TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 
       33.07        29.59        11.77        18.51        16.90        12.46 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 
        3.06        24.95        34.06        29.82         5.13         5.92 
TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5973 
       48.36       129.21        47.28       107.51        94.85        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 
       48.59        60.49         7.07        43.23        40.96        90.08 
TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 
       26.43        15.06        30.05         8.38        28.31         4.14 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 
      126.12       111.12        18.81         5.23        52.31        21.76 
TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 
       10.75        36.00        31.33        17.10        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7429 
       18.41        35.54         0.46         0.07        14.86         3.48 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 
      142.49         6.38        24.66        10.39         7.76        23.01 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 
       18.02        14.04        18.90         9.83        12.10        10.65 
TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A61W TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-A61G 
       18.54         0.49         0.46         0.16         1.02        11.84 
TCGA-IQ-A61H TCGA-MT-A67D TCGA-P3-A5QF 
       13.51         1.84        10.85 

$`5Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64        37.28         8.15        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90        23.84        20.48        53.75        57.44         6.21 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4223 
       21.17        14.79        29.42         5.65         7.82        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       22.59        20.98        14.33         0.13         6.31        23.70 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
        4.67        20.15        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5358 TCGA-CN-5359 
       14.33        34.68        26.63        35.67         8.58        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       22.45         9.01        13.94        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 
        1.48         3.19         9.07         6.61        13.94         5.82 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
       15.88         5.75        48.16        39.68        21.50        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       46.75        29.46        45.99        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-7063 
       32.35        32.88        34.75        32.35        14.96        48.03 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       16.70        43.00        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       58.42        50.01        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
       15.75        47.34        29.23         0.99        31.96         9.17 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 
        7.10        35.41        29.92       139.40        17.16       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       13.35        23.05        21.04        62.43         9.57         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        12.03        42.35         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7097 
       65.82        10.98         7.13         2.50        64.80        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7183 
        7.99         9.01         1.84        12.89        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7250 
       56.68         4.73        47.47        26.20        18.97        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
        4.96        11.87         2.10        57.47        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67        22.85        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 
      100.54        56.48       156.49        54.90        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7085 
       19.73         7.13        16.60        21.99         5.98        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        25.41         9.60         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.03        18.64         3.45         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 
       58.42        35.54        16.96        33.86        25.48        20.42 
TCGA-DQ-7593 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J 
       12.13        11.18        16.11         0.43         3.02        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        4.34         0.07         0.82         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       14.50        19.30        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46         1.12        12.89         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        8.32        29.92        15.75        54.31        23.70 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           142.49            210.94 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            14.86             16.11 
[1] "0.1 - 142.5 (14.9)" "0.1 - 210.9 (16.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
[1] "hr=" "1.1"
D50V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5Q LOSS MUTATED         5       20        22        56         1
  5Q LOSS WILD-TYPE      19       38        37       118         5
D50V3, multiclass
                   vv
clus                T1 T2 T3 T4
  5Q LOSS MUTATED    5 32 27 40
  5Q LOSS WILD-TYPE 32 63 49 78
D50V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1               5                32
  T2              32                63
  T3              27                49
  T4              40                78
                   vv
clus                N0 N1 N2 N3
  5Q LOSS MUTATED   33 16 42  1
  5Q LOSS WILD-TYPE 92 29 75  4
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              33                92
  N1              16                29
  N2              42                75
  N3               1                 4
D50V6, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED   27  7
  5Q LOSS WILD-TYPE 62 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     27    7
  5Q LOSS WILD-TYPE   62   21
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              27                62
  MX               7                21
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    28  90
  5Q LOSS WILD-TYPE  79 176
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     28   90
  5Q LOSS WILD-TYPE   79  176
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              28                79
  MALE                90               176
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                     118
  5Q LOSS WILD-TYPE                                   250
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  5Q LOSS MUTATED                                                             0
  5Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  5Q LOSS MUTATED                                                     0
  5Q LOSS WILD-TYPE                                                   4
D50V8, multiclass
                                                             clus
vv                                                            5Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   118
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            5Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     250
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D50V9, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    20  98
  5Q LOSS WILD-TYPE  54 201
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     20   98
  5Q LOSS WILD-TYPE   54  201
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               20                54
  YES              98               201
D50V10, continuous
D50V11, continuous
D50V12, continuous

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    27  24
  6P LOSS WILD-TYPE 203 114
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51               317 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               24               114 
$`6P LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4725 TCGA-CN-4728 
       42.31        57.44         4.60        17.59        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-5359 TCGA-CN-6010 TCGA-CN-6024 
        5.13        21.11        26.63        12.39        14.73         7.36 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CQ-6223 TCGA-CR-6488 
        1.38         3.91         3.29        10.42        34.75        12.46 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7399 TCGA-CR-7404 
        9.27        39.12         3.06        29.23         5.92        48.36 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5444 TCGA-CV-6441 TCGA-CV-6940 TCGA-CV-6960 
      108.33        19.20        80.12         9.57        26.43        28.31 
TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 
        4.14        18.81         5.23        18.97        17.10        11.87 
TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7416 TCGA-CV-7418 TCGA-D6-6823 TCGA-D6-6826 
       47.97        18.41        25.02        25.94        23.01         5.03 
TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-F7-A623 TCGA-IQ-A61G 
       58.42        14.04        18.90        20.42         0.20        11.84 
TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65        15.75        54.31 

$`6P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.21        21.17        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        7.76        29.42        16.83        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        5.95         7.82         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.04        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
        6.31        23.70         4.67         6.38        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 
       21.11        12.99        17.79        14.33        34.68        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.04        16.83         8.58        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.01        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
       13.94         5.82         2.73         3.68         3.75         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       14.70        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       45.99        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        43.00        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       15.75        47.18        47.34        40.90        35.84         3.42 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.13        35.41        29.92       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21        47.28        17.95       107.51        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       91.50        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        40.96        21.04        62.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        7.13         8.38         2.50        64.80       126.12       111.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        31.33        26.20        95.34         4.96 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        36.13        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 
       89.33         9.67         0.46        22.85         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
        6.38        21.99         5.98        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
        7.76        27.22        13.25        25.41         9.60         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11        18.64         3.45         4.18         3.68         3.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7592 
       35.54        16.96        33.86        18.02        25.48         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       14.50        19.30        13.51        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.84         7.33         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         8.32        29.92        23.70        10.85 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.20              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           108.33            210.94 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            17.59             15.16 
[1] "0.2 - 108.3 (17.6)" "0.1 - 210.9 (15.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D51V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6P LOSS MUTATED         1        8         7        28         0
  6P LOSS WILD-TYPE      23       50        52       146         6
D51V3, multiclass
                   vv
clus                T1 T2 T3 T4
  6P LOSS MUTATED    3 10 12 19
  6P LOSS WILD-TYPE 34 85 64 99
D51V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               3                34
  T2              10                85
  T3              12                64
  T4              19                99
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED    13   5  19   0
  6P LOSS WILD-TYPE 112  40  98   5
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              13               112
  N1               5                40
  N2              19                98
  N3               0                 5
D51V6, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    9  4
  6P LOSS WILD-TYPE 80 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      9    4
  6P LOSS WILD-TYPE   80   24
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0               9                80
  MX               4                24
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    11  40
  6P LOSS WILD-TYPE  96 226
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     11   40
  6P LOSS WILD-TYPE   96  226
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              11                96
  MALE                40               226
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                      51
  6P LOSS WILD-TYPE                                   317
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6P LOSS MUTATED                                                             0
  6P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6P LOSS MUTATED                                                     0
  6P LOSS WILD-TYPE                                                   4
D51V8, multiclass
                                                             clus
vv                                                            6P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    51
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            6P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     317
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D51V9, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    11  40
  6P LOSS WILD-TYPE  63 259
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     11   40
  6P LOSS WILD-TYPE   63  259
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO               11                63
  YES              40               259
D51V10, continuous
D51V11, continuous
D51V12, continuous

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    32  18
  6Q LOSS WILD-TYPE 198 120
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               50               318 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               18               120 
$`6Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5559 TCGA-BB-4225 TCGA-CN-4725 TCGA-CN-4728 
       42.31        17.10        57.44         4.60        15.95        20.15 
TCGA-CN-4729 TCGA-CN-4740 TCGA-CN-5359 TCGA-CN-6010 TCGA-CN-6024 TCGA-CN-6988 
        5.13        26.63        12.39        14.73         7.36         1.38 
TCGA-CN-6994 TCGA-CN-A641 TCGA-CQ-6223 TCGA-CR-5248 TCGA-CR-6473 TCGA-CR-6491 
        3.91        12.07        34.75        54.64        36.99        11.51 
TCGA-CR-7365 TCGA-CR-7373 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5440 
       39.12        29.23         5.92        48.36       108.33       107.51 
TCGA-CV-5444 TCGA-CV-6441 TCGA-CV-6940 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7091 
       80.12         9.57        26.43        53.92        65.82       111.12 
TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7254 
       18.81         5.23        56.68        18.97        11.87        47.97 
TCGA-CV-7263 TCGA-CV-7416 TCGA-D6-6823 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5631 
       18.41        25.02        23.01         5.03        58.42        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-F7-A50G TCGA-F7-A623 TCGA-HD-A633 
       14.04        18.90        20.42         0.49         0.20         1.61 
TCGA-IQ-A61G TCGA-MT-A67G 
       11.84         3.65 

$`6Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       23.74        57.90        23.84        20.48        53.75         6.21 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       21.17        14.79         2.07        12.99         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.04        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
        6.31        23.70         4.67         6.38        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       35.67        13.05        16.04        16.83         8.58        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45         9.01        13.94        12.20        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       10.36        14.24         1.48        12.85         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
        6.61        13.94         5.82         2.73         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.29         1.51        14.70        17.26        15.88         5.75 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        54.54        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        11.77        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        24.95         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      139.40        17.16       129.21        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       94.85        76.47        91.50        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 
       12.03        42.35        15.06        30.05         6.08        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
      126.12        12.66         7.99         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       12.89        21.76        71.21        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        4.96         2.10        36.13        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
      142.49        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        9.60         2.53        16.11        18.64         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7590 
        3.68         3.42        35.54        16.96        33.86        25.48 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       16.11         0.43         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       19.30        13.51        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.20              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           111.12            210.94 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           18.855            15.010 
[1] "0.2 - 111.1 (18.9)" "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6Q LOSS MUTATED         1        8         6        25         0
  6Q LOSS WILD-TYPE      23       50        53       149         6
D52V3, multiclass
                   vv
clus                T1 T2 T3 T4
  6Q LOSS MUTATED    3 10  7 20
  6Q LOSS WILD-TYPE 34 85 69 98
D52V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               3                34
  T2              10                85
  T3               7                69
  T4              20                98
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED    14   5  15   0
  6Q LOSS WILD-TYPE 111  40 102   5
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              14               111
  N1               5                40
  N2              15               102
  N3               0                 5
D52V6, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED    9  4
  6Q LOSS WILD-TYPE 80 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      9    4
  6Q LOSS WILD-TYPE   80   24
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0               9                80
  MX               4                24
D52V7, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED     9  41
  6Q LOSS WILD-TYPE  98 225
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      9   41
  6Q LOSS WILD-TYPE   98  225
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               9                98
  MALE                41               225
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                      50
  6Q LOSS WILD-TYPE                                   318
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  6Q LOSS MUTATED                                                             0
  6Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  6Q LOSS MUTATED                                                     0
  6Q LOSS WILD-TYPE                                                   4
D52V8, multiclass
                                                             clus
vv                                                            6Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    50
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            6Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     318
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D52V9, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    12  38
  6Q LOSS WILD-TYPE  62 261
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     12   38
  6Q LOSS WILD-TYPE   62  261
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO               12                62
  YES              38               261
D52V10, continuous
D52V11, continuous
D52V12, continuous

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    13   4
  7P LOSS WILD-TYPE 217 134
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               17               351 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                4               134 
$`7P LOSS MUTATED`
TCGA-BA-5559 TCGA-BA-A6DE TCGA-CN-5374 TCGA-CN-6992 TCGA-CN-6998 TCGA-CN-A63U 
       57.44         5.95         9.01         2.73         1.51        17.26 
TCGA-CR-6473 TCGA-CV-5435 TCGA-CV-6003 TCGA-CV-7242 TCGA-CV-7429 TCGA-CV-7430 
       36.99        47.28        40.96        36.00         3.48        16.27 
TCGA-CV-7433 TCGA-CX-7082 TCGA-F7-A50G TCGA-F7-A623 TCGA-MZ-A6I9 
       19.73        10.39         0.49         0.20         8.32 

$`7P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         6.21        21.17        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        3.72         7.76        29.42        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.65         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        20.15         5.13        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       35.67        13.05        16.04        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52        22.45        14.73        13.94        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61        13.94         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V 
        3.91         3.68         3.75         3.29        14.70        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.54        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        19.20        17.95       107.51        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.50        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        60.49         7.07        43.23        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.57        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 
      100.54        14.86        56.48       156.49        54.90        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
        7.13       142.49        16.60         6.38        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       24.66        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        9.60        23.01         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 
        3.45         4.18         3.68         3.42        58.42        35.54 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        33.86        18.02        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       18.54        16.11         0.43         3.02        19.20         0.10 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.62         0.46         0.43        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.99         0.99         1.61         0.92        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       12.89         1.84         3.65         3.65        29.92        15.75 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.20              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            57.44            210.94 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            10.39             15.88 
[1] "0.2 - 57.4 (10.4)"  "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7P LOSS MUTATED         0        2         2        10         0
  7P LOSS WILD-TYPE      24       56        57       164         6
D53V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     1   5   4   4
  7P LOSS WILD-TYPE  36  90  72 114
D53V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               1                36
  T2               5                90
  T3               4                72
  T4               4               114
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED     3   2   9   0
  7P LOSS WILD-TYPE 122  43 108   5
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0               3               122
  N1               2                43
  N2               9               108
  N3               0                 5
D53V6, binary
                   cls
clus                 0  1
  7P LOSS MUTATED    4  1
  7P LOSS WILD-TYPE 85 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      4    1
  7P LOSS WILD-TYPE   85   27
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               4                85
  MX               1                27
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     4  13
  7P LOSS WILD-TYPE 103 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      4   13
  7P LOSS WILD-TYPE  103  253
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               4               103
  MALE                13               253
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                      17
  7P LOSS WILD-TYPE                                   351
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7P LOSS MUTATED                                                             0
  7P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7P LOSS MUTATED                                                     0
  7P LOSS WILD-TYPE                                                   4
D53V8, multiclass
                                                             clus
vv                                                            7P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    17
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            7P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     351
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D53V9, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     2  15
  7P LOSS WILD-TYPE  72 284
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      2   15
  7P LOSS WILD-TYPE   72  284
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                2                72
  YES              15               284
D53V10, continuous
D53V11, continuous
D53V12, continuous

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    22  10
  7Q LOSS WILD-TYPE 208 128
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               32               336 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               10               128 
$`7Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-A6DE TCGA-BB-4224 
       15.16        13.64        42.31        57.44         5.95         9.04 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-5359 TCGA-CN-5374 TCGA-CN-6998 
       15.19        22.78        17.79        12.39         9.01         1.51 
TCGA-CN-A63U TCGA-CQ-6220 TCGA-CR-6474 TCGA-CR-7365 TCGA-CR-7374 TCGA-CR-7398 
       17.26        32.35        18.51        39.12         0.99         5.13 
TCGA-CV-5444 TCGA-CV-6003 TCGA-CV-6954 TCGA-CV-7180 TCGA-CV-7429 TCGA-CV-7433 
       80.12        40.96        65.82        10.75         3.48        19.73 
TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6823 TCGA-F7-8489 TCGA-F7-A50G TCGA-IQ-7632 
        6.38        10.39        23.01         0.43         0.49        14.50 
TCGA-MZ-A6I9 TCGA-P3-A5QE 
        8.32        23.70 

$`7Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        37.28         9.07         8.15        23.74        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       17.10        23.84        20.48        53.75         6.21        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       14.79         2.07        12.99         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 
       16.83        11.54         7.10         5.65         7.82         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
       95.05         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 
       15.95         4.67         6.38        20.15         5.13        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       21.11        12.99        14.33        34.68        26.63        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.04        16.83         8.58        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       22.45        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24         1.48        12.85         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y 
        3.68         3.75         3.29        14.70        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       43.00        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       94.85        76.47        91.50        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       86.83        48.59        60.49         7.07        43.23        21.04 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       62.43         9.57        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.92        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        71.21       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 
      100.54        14.86        56.48       156.49        54.90        16.27 
TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD 
       84.49         7.13       142.49        16.60        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       24.66        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        9.60         2.53        16.11         5.03        18.64         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.68         3.42        58.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       33.86        18.02        14.04        18.90        25.48        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        9.83        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
       16.11         3.02        19.20         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.43         0.20        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       19.30        11.84        13.51        14.47         5.29        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.84         7.33         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF 
        3.65         3.65        29.92        15.75        54.31        10.85 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.43              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            80.12            210.94 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            14.83             15.95 
[1] "0.4 - 80.1 (14.8)"  "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D54V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7Q LOSS MUTATED         1        5         4        18         0
  7Q LOSS WILD-TYPE      23       53        55       156         6
D54V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     1  13   4  10
  7Q LOSS WILD-TYPE  36  82  72 108
D54V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               1                36
  T2              13                82
  T3               4                72
  T4              10               108
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED     8   5  12   0
  7Q LOSS WILD-TYPE 117  40 105   5
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               8               117
  N1               5                40
  N2              12               105
  N3               0                 5
D54V6, binary
                   cls
clus                 0  1
  7Q LOSS MUTATED   10  2
  7Q LOSS WILD-TYPE 79 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     10    2
  7Q LOSS WILD-TYPE   79   26
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              10                79
  MX               2                26
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     8  24
  7Q LOSS WILD-TYPE  99 242
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      8   24
  7Q LOSS WILD-TYPE   99  242
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               8                99
  MALE                24               242
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                      31
  7Q LOSS WILD-TYPE                                   337
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  7Q LOSS MUTATED                                                             0
  7Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  7Q LOSS MUTATED                                                     1
  7Q LOSS WILD-TYPE                                                   3
D54V8, multiclass
                                                             clus
vv                                                            7Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    31
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            7Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     337
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D54V9, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     8  24
  7Q LOSS WILD-TYPE  66 275
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      8   24
  7Q LOSS WILD-TYPE   66  275
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                8                66
  YES              24               275
D54V10, continuous
D54V11, continuous
D54V12, continuous

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    80  59
  8P LOSS WILD-TYPE 150  79
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              139               229 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               59                79 
$`8P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5558 TCGA-BA-6870 
       15.16        13.64         8.15        23.74        53.75        14.79 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DE TCGA-BB-4227 TCGA-BB-7862 
       12.99         7.76        16.83         5.95         4.37        17.59 
TCGA-BB-7863 TCGA-BB-7871 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 TCGA-CN-4726 
       13.87        14.04         0.16         0.13        15.95         4.67 
TCGA-CN-4736 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5367 
       12.99        13.05        35.54         8.28        11.54        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45         9.01        13.94        14.24        10.36 
TCGA-CN-6020 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A641 
        3.19         2.73         3.75         3.29        14.70        12.07 
TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
        2.93        10.42         4.21        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 
       26.76        48.03        45.27        33.07        16.70        29.59 
TCGA-CR-5247 TCGA-CR-6471 TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-7364 
       11.77        39.52        18.51        11.64        12.46        47.18 
TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
       35.84        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5432 TCGA-CV-5434 
       19.92        27.02         5.92        35.41       129.21       108.33 
TCGA-CV-5441 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5973 TCGA-CV-6436 TCGA-CV-6933 
       94.85        80.12        17.06        86.83        62.43        90.08 
TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 
        9.70        26.43       126.08         6.08        65.82         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7100 
        8.38        28.31         4.14        64.80       126.12         9.01 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
        1.84        12.89        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7414 
       18.97        17.10         2.10        36.13        35.54         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7427 
       22.85        25.02         0.07        34.09       100.54       156.49 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6517 
        7.13         6.38        21.99         5.98        27.22         9.60 
TCGA-D6-6825 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
       16.11         3.68        58.42        35.54        33.86        18.02 
TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J 
       18.90         9.83        16.11         0.43         3.02        19.20 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-8224 
        0.46         0.43         1.87         4.34         0.16         1.81 
TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
        0.99         1.61        15.95        19.30        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A51X TCGA-MZ-A6I9 TCGA-P3-A5Q6 
       14.47         5.29        11.54         1.12         8.32        15.75 
TCGA-P3-A5QA 
       54.31 

$`8P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 
        9.30        37.28         9.07        42.31        57.90        17.10 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 
       23.84        20.48        57.44         6.21        21.17         2.07 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF 
        3.72        29.42        11.54         7.10         5.65         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.60        18.31        10.19 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       22.59        20.98        37.87        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
        6.31        23.70         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       22.78        21.11        21.11        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       26.63        35.67        16.04        16.83         8.58        12.39 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6017 
       16.21        11.84        12.49        14.73        12.20        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        1.48        12.85         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A63U 
        1.38         5.82         3.91         3.68         1.51        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
       15.88         5.75        48.16        39.68        21.50        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 
       46.75        29.46        45.99        11.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       32.88        34.75        32.35        43.00        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        58.42        50.01        34.52        36.99 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.34         7.66 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        3.42         3.06        34.06        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10         5.13        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      139.40        17.16        47.28        19.20        17.95       107.51 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       76.47        91.50        13.35        23.05        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6934 
        7.07        43.23        40.96        21.04         9.57         2.14 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        5.46        20.52         4.70        21.86        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 
       12.03        42.35        15.06        30.05        53.92        10.98 
TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 
        2.50       111.12        18.81        12.66         7.99         5.23 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 
       52.31        21.76        71.21        10.75       114.94        31.33 
TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 
       26.20        95.34         4.96        11.87        47.97        18.41 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7418 
       57.47        17.82       210.94        89.33         9.67        25.94 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       14.86        56.48        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
       19.73       142.49        16.60        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 
        7.76        13.25        25.41        23.01         2.53         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7588 
       18.64         3.45         4.18         3.42        16.96        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       25.48        20.42        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A623 TCGA-H7-7774 
       18.54         0.49         0.10        12.62         0.20        13.38 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A6I0 
        0.07         0.82         1.02         1.45         0.99         0.92 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
       34.75         4.01        14.50        11.84         7.33         0.46 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QE 
       12.89         1.84         3.65         3.65        29.92        23.70 
TCGA-P3-A5QF 
       10.85 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           156.49            210.94 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            14.04             16.96 
[1] "0.1 - 156.5 (14.0)" "0.1 - 210.9 (17.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D55V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8P LOSS MUTATED        10       19        28        64         3
  8P LOSS WILD-TYPE      14       39        31       110         3
D55V3, multiclass
                   vv
clus                T1 T2 T3 T4
  8P LOSS MUTATED   14 33 35 43
  8P LOSS WILD-TYPE 23 62 41 75
D55V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              14                23
  T2              33                62
  T3              35                41
  T4              43                75
                   vv
clus                N0 N1 N2 N3
  8P LOSS MUTATED   42 22 45  2
  8P LOSS WILD-TYPE 83 23 72  3
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              42                83
  N1              22                23
  N2              45                72
  N3               2                 3
D55V6, binary
                   cls
clus                 0  1
  8P LOSS MUTATED   38 11
  8P LOSS WILD-TYPE 51 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     38   11
  8P LOSS WILD-TYPE   51   17
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              38                51
  MX              11                17
D55V7, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    47  93
  8P LOSS WILD-TYPE  60 173
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     47   93
  8P LOSS WILD-TYPE   60  173
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              47                60
  MALE                93               173
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                     140
  8P LOSS WILD-TYPE                                   228
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8P LOSS MUTATED                                                             0
  8P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8P LOSS MUTATED                                                     0
  8P LOSS WILD-TYPE                                                   4
D55V8, multiclass
                                                             clus
vv                                                            8P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   140
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            8P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     228
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D55V9, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    26 114
  8P LOSS WILD-TYPE  48 185
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     26  114
  8P LOSS WILD-TYPE   48  185
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               26                48
  YES             114               185
D55V10, continuous
D55V11, continuous
D55V12, continuous

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    12   9
  8Q LOSS WILD-TYPE 218 129
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               21               347 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9               129 
$`8Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-A6D8 TCGA-CN-4726 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-6011 
       13.64        16.83         4.67        35.54        11.57        13.94 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-A641 TCGA-CQ-6225 TCGA-CQ-7063 TCGA-CQ-7064 
       14.24        10.36        12.07        13.25        48.03        45.27 
TCGA-CR-6471 TCGA-CV-6956 TCGA-CV-7242 TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7440 
       39.52         7.13        36.00        36.13        22.85        21.99 
TCGA-CV-A6JD TCGA-H7-8502 TCGA-MZ-A6I9 
        5.98         4.34         8.32 

$`8Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         6.21        21.17        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        29.42        11.54         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4727 
        0.16         0.13         6.31        23.70        15.95         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99        17.79        14.33        34.68        26.63        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05        16.04        16.83         8.58        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        9.01        14.73        12.20        14.24         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61        13.94         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 
        1.51        14.70        17.26        15.88         5.75        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 
       54.64        37.87        26.24        58.42        50.01        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        91.50        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.04        62.43         9.57        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 
        6.08        53.92        65.82        10.98         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.01         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       35.54        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       11.18        18.54        16.11         0.43         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.20         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
       34.75        15.95         4.01        14.50        19.30        11.84 
TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       13.51        14.47         5.29        11.54        11.84         7.33 
TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        0.46         1.12        12.89         1.84         3.65         3.65 
TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        15.75        54.31        23.70        10.85 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             4.34              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            48.03            210.94 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            13.94             15.95 
[1] "4.3 - 48.0 (13.9)"  "0.1 - 210.9 (15.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D56V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8Q LOSS MUTATED         1        2         4        12         0
  8Q LOSS WILD-TYPE      23       56        55       162         6
D56V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     1   2   5  11
  8Q LOSS WILD-TYPE  36  93  71 107
D56V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               1                36
  T2               2                93
  T3               5                71
  T4              11               107
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED     5   4   7   0
  8Q LOSS WILD-TYPE 120  41 110   5
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               5               120
  N1               4                41
  N2               7               110
  N3               0                 5
D56V6, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    7  2
  8Q LOSS WILD-TYPE 82 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      7    2
  8Q LOSS WILD-TYPE   82   26
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               7                82
  MX               2                26
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     5  17
  8Q LOSS WILD-TYPE 102 249
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5   17
  8Q LOSS WILD-TYPE  102  249
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               5               102
  MALE                17               249
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                      22
  8Q LOSS WILD-TYPE                                   346
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  8Q LOSS MUTATED                                                             0
  8Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  8Q LOSS MUTATED                                                     0
  8Q LOSS WILD-TYPE                                                   4
D56V8, multiclass
                                                             clus
vv                                                            8Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    22
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            8Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     346
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D56V9, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     6  16
  8Q LOSS WILD-TYPE  68 283
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      6   16
  8Q LOSS WILD-TYPE   68  283
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                6                68
  YES              16               283
D56V10, continuous
D56V11, continuous
D56V12, continuous

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    75  56
  9P LOSS WILD-TYPE 155  82
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              131               237 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               56                82 
$`9P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6868 TCGA-BA-6869 
       15.16        13.64         9.07        17.10         6.21        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       14.79         2.07        12.99         7.76        29.42        16.83 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 TCGA-BB-8601 
        5.65         5.95         9.04        17.59        14.33        20.52 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       23.70         4.67         6.38         5.13        15.19        22.78 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5373 TCGA-CN-6018 
       21.11        17.79        26.63        35.54        22.45         1.48 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        3.19         9.07         7.36         1.38         5.82         2.73 
TCGA-CN-6997 TCGA-CN-A641 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 
        3.29        12.07        21.50         2.93        10.42        32.88 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 
       13.25        14.96        45.27        33.07        16.70        29.59 
TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 
       11.77        34.52        18.51        16.90        12.46        11.51 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7383 
       47.18        39.12        40.90        24.95         0.99        17.13 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5432 
       27.02        29.82         5.13        35.41       139.40       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5976 
       47.28        19.20        17.95        80.12        86.83        48.59 
TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6940 
       43.23         9.57        90.08         2.14        20.52        26.43 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 
       12.03        42.35        28.31       111.12        12.66         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7242 
       52.31        12.89        21.76        10.75         4.73        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7413 
       31.33        26.20         4.96         2.10        18.41         9.67 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7430 TCGA-CV-7432 
       22.85         0.07        34.09       100.54        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 
        7.13       142.49        21.99        10.39         7.76        23.01 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5629 
        5.03         3.45         4.18         3.68         3.42        16.96 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-A50I TCGA-F7-A61W 
       18.02        14.04        10.65        18.54         3.02         0.46 
TCGA-F7-A623 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-7630 
        0.20         0.16         0.82         0.99         1.61        15.95 
TCGA-IQ-A61G TCGA-IQ-A61J TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5Q6 
       11.84        14.47         1.12         1.84        15.75 

$`9P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15        23.74        42.31        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DA 
       23.84        20.48        53.75        57.44         3.72        11.54 
TCGA-BA-A6DB TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
        7.10         7.82         6.12        95.05         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4725 
       14.04        71.05         0.16         0.13         6.31        15.95 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 
       20.15        21.11        12.99        14.33        34.68        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05        16.04        16.83         8.58        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01        14.73        13.94        12.20        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6994 TCGA-CN-6995 
       14.24        12.85         6.61        13.94         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.75         1.51        14.70        17.26        15.88         5.75 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       48.16        39.68        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21         4.21        28.60        32.35        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
        4.21        26.76        48.03        43.00        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 
       37.87        26.24        58.42        50.01        39.52        36.99 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       15.75         9.27        47.34        35.84         3.42         3.06 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10         5.92        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       17.16       108.33       107.51        94.85        76.47        91.50 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 
       17.06        13.35        23.05        60.49         7.07        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
       21.04        62.43         9.70         5.46         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       11.24       126.08        19.79        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       53.92        65.82        10.98         7.13         8.38         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 
        4.14        64.80       126.12        18.81         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7238 TCGA-CV-7247 
        1.84        71.21       114.94        56.68        47.47        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 
       17.10        95.34        11.87        47.97        36.13        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 
       35.54        17.82       210.94        89.33         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       25.94        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 
       19.73        16.60         6.38         5.98        24.66        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        25.41         9.60         2.53        16.11 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 
       18.64        58.42        35.54        33.86        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-8298 
       20.42         9.83        12.13        12.10        11.18        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 
        0.43         0.49        19.20         0.10        12.62         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8224 
       13.38         1.87         4.34         0.07         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45         0.99         0.92        34.75         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S 
       19.30        13.51         5.29        11.54        11.84         7.33 
TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
        0.46        12.89         3.65         3.65         8.32        29.92 
TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       54.31        23.70        10.85 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.07              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           142.49            210.94 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            15.16             16.04 
[1] "0.1 - 142.5 (15.2)" "0.1 - 210.9 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D57V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9P LOSS MUTATED         9       21        20        62         1
  9P LOSS WILD-TYPE      15       37        39       112         5
D57V3, multiclass
                   vv
clus                T1 T2 T3 T4
  9P LOSS MUTATED   13 39 25 37
  9P LOSS WILD-TYPE 24 56 51 81
D57V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              13                24
  T2              39                56
  T3              25                51
  T4              37                81
                   vv
clus                N0 N1 N2 N3
  9P LOSS MUTATED   44 17 44  1
  9P LOSS WILD-TYPE 81 28 73  4
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              44                81
  N1              17                28
  N2              44                73
  N3               1                 4
D57V6, binary
                   cls
clus                 0  1
  9P LOSS MUTATED   29  7
  9P LOSS WILD-TYPE 60 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     29    7
  9P LOSS WILD-TYPE   60   21
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              29                60
  MX               7                21
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    32  99
  9P LOSS WILD-TYPE  75 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     32   99
  9P LOSS WILD-TYPE   75  167
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              32                75
  MALE                99               167
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                     131
  9P LOSS WILD-TYPE                                   237
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9P LOSS MUTATED                                                             0
  9P LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9P LOSS MUTATED                                                     0
  9P LOSS WILD-TYPE                                                   4
D57V8, multiclass
                                                             clus
vv                                                            9P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                   131
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            9P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     237
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D57V9, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    25 106
  9P LOSS WILD-TYPE  49 193
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     25  106
  9P LOSS WILD-TYPE   49  193
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               25                49
  YES             106               193
D57V10, continuous
D57V11, continuous
D57V12, continuous

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    33  27
  9Q LOSS WILD-TYPE 197 111
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               60               308 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               27               111 
$`9Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       15.16        14.79         2.07         7.76        29.42        16.83 
TCGA-BB-8601 TCGA-CN-4740 TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6024 TCGA-CQ-6221 
       20.52        26.63         1.48         3.19         7.36        32.88 
TCGA-CQ-6228 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-6474 
       14.96        16.70        29.59        11.77        34.52        18.51 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7390 TCGA-CV-5430 
       47.18        39.12        24.95         0.99        29.82       139.40 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5979 TCGA-CV-6441 
       47.28        19.20        94.85        86.83        43.23         9.57 
TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-7091 TCGA-CV-7095 
       90.08        20.52        26.43        12.03       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7252 
       12.66         5.23        10.75         4.73        31.33         4.96 
TCGA-CV-7255 TCGA-CV-7413 TCGA-CV-7423 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 
        2.10         9.67       100.54       142.49        21.99        10.39 
TCGA-D6-6823 TCGA-DQ-5631 TCGA-F7-7848 TCGA-F7-A50I TCGA-F7-A623 TCGA-HD-7753 
       23.01        18.02        18.54         3.02         0.20         0.16 
TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-MT-A67D TCGA-P3-A5Q6 
        0.99        15.95        11.84        14.47         1.84        15.75 

$`9Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A6DA 
       57.44         6.21        21.17        12.99         3.72        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.65         5.95         7.82         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       71.05         0.16         0.13         6.31        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        20.15         5.13        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       35.67        13.05        16.04        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        22.45         9.01        14.73        13.94 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6021 
       12.20        14.24        10.36        14.24        12.85         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61        13.94         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U 
        3.68         3.75         3.29         1.51        14.70        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21         4.21        28.60        32.35        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       13.25         4.21        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       43.00        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        39.52        36.99        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       15.75         9.27        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
        3.06        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        5.13         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
      129.21       108.33        17.95       107.51        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       80.12        17.06        13.35        23.05        48.59        60.49 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
        7.07        40.96        21.04        62.43         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        5.46         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
       64.80       126.12         7.99         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7238 
       12.89        21.76        71.21       114.94        56.68        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
       36.00        26.20        18.97        17.10        95.34        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.48        16.27        84.49        19.73         7.13        16.60 
TCGA-CV-7438 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38         5.98        24.66        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        25.41         9.60         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       20.42         9.83        12.13        12.10        10.65        11.18 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       16.11         0.43         0.49        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A633 
        0.82         1.02         1.81         1.45         0.99         1.61 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
        0.92        34.75         4.01        14.50        19.30        13.51 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QA 
       12.89         3.65         3.65         8.32        29.92        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           142.49            210.94 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           16.765            15.125 
[1] "0.2 - 142.5 (16.8)" "0.1 - 210.9 (15.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9Q LOSS MUTATED         4       12        10        26         0
  9Q LOSS WILD-TYPE      20       46        49       148         6
D58V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED     7  22   8  16
  9Q LOSS WILD-TYPE  30  73  68 102
D58V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1               7                30
  T2              22                73
  T3               8                68
  T4              16               102
                   vv
clus                 N0  N1  N2  N3
  9Q LOSS MUTATED    18   9  19   0
  9Q LOSS WILD-TYPE 107  36  98   5
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              18               107
  N1               9                36
  N2              19                98
  N3               0                 5
D58V6, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED   16  5
  9Q LOSS WILD-TYPE 73 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     16    5
  9Q LOSS WILD-TYPE   73   23
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              16                73
  MX               5                23
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    16  44
  9Q LOSS WILD-TYPE  91 222
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     16   44
  9Q LOSS WILD-TYPE   91  222
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              16                91
  MALE                44               222
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                      60
  9Q LOSS WILD-TYPE                                   308
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  9Q LOSS MUTATED                                                             0
  9Q LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  9Q LOSS MUTATED                                                     0
  9Q LOSS WILD-TYPE                                                   4
D58V8, multiclass
                                                             clus
vv                                                            9Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    60
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       0
                                                             clus
vv                                                            9Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     308
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         4
D58V9, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    14  46
  9Q LOSS WILD-TYPE  60 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     14   46
  9Q LOSS WILD-TYPE   60  253
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO               14                60
  YES              46               253
D58V10, continuous
D58V11, continuous
D58V12, continuous

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    65  49
  10P LOSS WILD-TYPE 165  89
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               114                254 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                49                 89 
$`10P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 
        9.30         9.07        42.31        57.44         6.21        14.79 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8601 
        3.72        29.42        16.83        37.87        14.33        20.52 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5359 
        0.16        23.70        15.95        17.79        16.04        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 
       35.54         8.28         9.01        13.94        12.20         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6996 TCGA-CN-6998 
       12.85         3.19         7.36         1.38         3.75         1.51 
TCGA-CN-A63U TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       17.26        48.16         2.93        34.75        32.35        13.25 
TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7069 TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-7365 
       14.96        45.27        29.59        18.51        11.64        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.42        24.95        29.23 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7398 
       19.92        26.17        17.13        47.01        12.89         5.13 
TCGA-CV-5435 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6936 
       47.28        80.12        17.06        60.49        43.23         5.46 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6954 
       26.43        11.24       126.08        15.06         6.08        65.82 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
        2.50         4.14       126.12        12.66         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        1.84        71.21        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7418 
       17.10         4.96        18.41        57.47         0.46        25.94 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7438 
      100.54        14.86        54.90        84.49         7.13         6.38 
TCGA-CV-A6JD TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-A4ZB 
        5.98        27.22         9.60        23.01         5.03         3.42 
TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-F7-8489 
       16.96        18.02        14.04        25.48        12.13         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A61V TCGA-F7-A620 TCGA-HD-8635 TCGA-HD-A633 
        0.49         3.02        12.62         0.43         0.99         1.61 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-MT-A51X TCGA-MZ-A6I9 
       11.84        13.51        14.47         5.29         1.12         8.32 

$`10P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
       15.16        13.64        37.28         8.15        23.74        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6871 
       17.10        23.84        20.48        53.75        21.17         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       12.99         7.76        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7871 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4727 
       14.04        71.05         0.13         6.31         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        34.68        26.63        35.67        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       16.83         8.58        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 
       12.49         8.52        22.45        14.73        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 
       14.24         9.07         6.61        13.94         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y 
        3.91         3.68         3.29        14.70        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       12.07        39.68        21.50        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 
       32.88         4.21        26.76        48.03        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       43.00        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 
       58.42        50.01        39.52        34.52        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.34         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7374 
       11.51        15.75         9.27        47.18         3.06         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7390 
       31.96         9.17        34.06        32.78        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        19.20        17.95       107.51        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       76.47        91.50        13.35        23.05        86.83        48.59 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        40.96        21.04        62.43         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 
        2.14         9.70        20.52         4.70        21.86        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       12.03        42.35        30.05        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 
        8.38        28.31        64.80       111.12        18.81         7.99 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
        4.73        47.47        95.34        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.02         0.07        34.09        56.48       156.49 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 
        3.48        16.27        19.73       142.49        16.60        21.99 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
       24.66        10.39        10.55         7.76        13.25        25.41 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        2.53        16.11        18.64         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       58.42        35.54        33.86        18.90        20.42         9.83 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50J 
       12.10        10.65        11.18        18.54        16.11        19.20 
TCGA-F7-A61S TCGA-F7-A61W TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.10         0.46         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A 
       19.30        11.54        11.84         7.33         0.46        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        1.84         3.65         3.65        29.92        15.75        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.16               0.07 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            126.12             210.94 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            14.825             16.110 
[1] "0.2 - 126.1 (14.8)" "0.1 - 210.9 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D59V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10P LOSS MUTATED         5       18        16        60         2
  10P LOSS WILD-TYPE      19       40        43       114         4
D59V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  10P LOSS MUTATED    8 31 20 42
  10P LOSS WILD-TYPE 29 64 56 76
D59V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                8                 29
  T2               31                 64
  T3               20                 56
  T4               42                 76
                    vv
clus                 N0 N1 N2 N3
  10P LOSS MUTATED   35 16 40  1
  10P LOSS WILD-TYPE 90 29 77  4
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               35                 90
  N1               16                 29
  N2               40                 77
  N3                1                  4
D59V6, binary
                    cls
clus                  0  1
  10P LOSS MUTATED   31  7
  10P LOSS WILD-TYPE 58 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     31    7
  10P LOSS WILD-TYPE   58   21
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               31                 58
  MX                7                 21
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    26  89
  10P LOSS WILD-TYPE  81 177
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     26   89
  10P LOSS WILD-TYPE   81  177
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               26                 81
  MALE                 89                177
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                     115
  10P LOSS WILD-TYPE                                   253
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10P LOSS MUTATED                                                             0
  10P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10P LOSS MUTATED                                                     0
  10P LOSS WILD-TYPE                                                   4
D59V8, multiclass
                                                             clus
vv                                                            10P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    115
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            10P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      253
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D59V9, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    26  89
  10P LOSS WILD-TYPE  48 210
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     26   89
  10P LOSS WILD-TYPE   48  210
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                26                 48
  YES               89                210
D59V10, continuous
D59V11, continuous
D59V12, continuous

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    45  35
  10Q LOSS WILD-TYPE 185 103
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                80                288 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                35                103 
$`10Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5559 
       15.16         9.30         9.07        42.31        17.10        57.44 
TCGA-BA-A6D8 TCGA-BB-7870 TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-5355 
       16.83        37.87        20.52         0.16        15.95        16.04 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 
       12.39        35.54         9.01        12.20         1.48        12.85 
TCGA-CN-6020 TCGA-CN-6024 TCGA-CN-6998 TCGA-CN-A63U TCGA-CQ-5332 TCGA-CQ-6224 
        3.19         7.36         1.51        17.26        10.42        32.35 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6477 
       13.25        14.96        45.27        50.01        18.51        16.90 
TCGA-CR-6484 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 
       11.64        39.12        40.90        35.84         3.42        24.95 
TCGA-CR-7373 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5431 
       29.23        17.13        47.01        12.89         5.13        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6936 
      129.21       108.33        47.28        60.49        43.23         5.46 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 
       26.43        11.24        15.06         2.50         4.14       126.12 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7263 
       12.66         5.23        36.00        26.20        17.10        18.41 
TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7432 
       57.47         0.46        25.94       100.54        14.86        84.49 
TCGA-CV-7438 TCGA-D6-6823 TCGA-D6-A4ZB TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        6.38        23.01         3.42        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7593 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       25.48        12.13        11.84        13.51        14.47         5.29 
TCGA-MT-A51X TCGA-MZ-A6I9 
        1.12         8.32 

$`10Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 
       13.64        37.28         8.15        23.74        57.90        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       20.48        53.75         6.21        21.17        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB 
       12.99         3.72         7.76        29.42        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        5.65         5.95         7.82         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A480 
       22.59        20.98        14.04        14.33        71.05         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        23.70         4.67         6.38        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        22.78        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        34.68        26.63        35.67        13.05        16.83 
TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
        8.58         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 
       12.49         8.52        22.45        14.73        13.94        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
       10.36        14.24         9.07         6.61        13.94         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       14.70        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        26.76        48.03        33.07        16.70        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 
       58.42        39.52        34.52        36.99         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7376 
        9.27        47.18        47.34         3.06         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7388 
        9.17        34.06        19.92        26.17        32.78        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95       107.51        94.85        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        40.96        21.04        62.43         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 
        2.14         9.70        20.52         4.70        21.86       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 
       65.82        10.98         7.13         8.38        28.31        64.80 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
      111.12        18.81         7.99         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7250 TCGA-CV-7252 
        4.73        47.47        31.33        18.97        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 
       11.87        47.97         2.10        36.13        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
      210.94        89.33         9.67        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       34.09        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD 
       19.73         7.13       142.49        16.60        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       24.66        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60         2.53        16.11         5.03        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        58.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       33.86        20.42         9.83        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       18.54        16.11         0.43         0.49         3.02        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61L 
       34.75        15.95         4.01        14.50        19.30        11.54 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
       11.84         7.33         0.46        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65        29.92        15.75        54.31        23.70        10.85 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.16               0.07 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            129.21             210.94 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            16.435             15.470 
[1] "0.2 - 129.2 (16.4)" "0.1 - 210.9 (15.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
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        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10Q LOSS MUTATED         3       14        11        41         0
  10Q LOSS WILD-TYPE      21       44        48       133         6
D60V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  10Q LOSS MUTATED    5 23 17 24
  10Q LOSS WILD-TYPE 32 72 59 94
D60V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                5                 32
  T2               23                 72
  T3               17                 59
  T4               24                 94
                    vv
clus                  N0  N1  N2  N3
  10Q LOSS MUTATED    24   7  31   0
  10Q LOSS WILD-TYPE 101  38  86   5
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               24                101
  N1                7                 38
  N2               31                 86
  N3                0                  5
D60V6, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED   24  4
  10Q LOSS WILD-TYPE 65 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     24    4
  10Q LOSS WILD-TYPE   65   24
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               24                 65
  MX                4                 24
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    15  65
  10Q LOSS WILD-TYPE  92 201
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     15   65
  10Q LOSS WILD-TYPE   92  201
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               15                 92
  MALE                 65                201
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                      80
  10Q LOSS WILD-TYPE                                   288
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  10Q LOSS MUTATED                                                             0
  10Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  10Q LOSS MUTATED                                                     0
  10Q LOSS WILD-TYPE                                                   4
D60V8, multiclass
                                                             clus
vv                                                            10Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     80
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            10Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      288
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D60V9, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    20  60
  10Q LOSS WILD-TYPE  54 239
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     20   60
  10Q LOSS WILD-TYPE   54  239
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                20                 54
  YES               60                239
D60V10, continuous
D60V11, continuous
D60V12, continuous

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    59  40
  11P LOSS WILD-TYPE 171  98
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                99                269 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                40                 98 
$`11P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       15.16         9.07         2.07        12.99         3.72         7.76 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-8596 TCGA-CN-4728 
        5.65         5.95         4.37        37.87        71.05        20.15 
TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5359 
        5.13        21.11        34.68        26.63        16.83        12.39 
TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
        8.28        11.54        11.84         9.01        13.94        12.20 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        3.19         9.07         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5332 TCGA-CQ-6227 
        3.68         1.51        17.26         5.75        10.42         4.21 
TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 
       14.96        11.77        54.64        16.90         6.02        10.22 
TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7399 
        3.42         0.99        17.13        32.78        27.02         5.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5977 
       48.36        17.16       129.21        17.95       107.51        60.49 
TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6942 
        7.07         9.57        90.08         5.46        26.43       126.08 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 
       12.03        42.35       111.12        18.81        12.66         5.23 
TCGA-CV-7102 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7415 
        1.84        56.68        26.20        11.87        18.41        22.85 
TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7430 TCGA-CV-7435 TCGA-CX-7082 TCGA-D6-8568 
        0.07       100.54        16.27       142.49        10.39         3.45 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7594 
        3.68         3.42        58.42        16.96        18.90        12.10 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A623 TCGA-HD-7753 
       11.18        18.54        16.11         3.02         0.20         0.16 
TCGA-HD-7917 TCGA-HD-8635 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-MT-A51W TCGA-MT-A67D 
        1.02         0.99        11.84        14.47         0.46         1.84 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q6 
        3.65         8.32        15.75 

$`11P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90        17.10        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
        6.21        21.17        14.79        29.42        16.83        11.54 
TCGA-BA-A6DB TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        7.10         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.04        14.33        20.52         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 
       23.70        15.95         4.67         6.38        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 
       21.11        12.99        17.79        14.33        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5367 TCGA-CN-5369 
       16.04         8.58        35.54        16.21        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        8.52        22.45        14.73        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6996 
        1.48        12.85         6.61        13.94         7.36         3.75 
TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
        3.29        14.70        15.88        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       32.35        13.25        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-5250 
       16.70        43.00        29.59        84.23        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 
       35.84         3.06        24.95        29.23        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       34.06        19.92        26.17        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 
        5.13        35.41        29.92       139.40       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 
       13.35        23.05        86.83        48.59        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 
       21.04        62.43         2.14         9.70        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       21.86        11.24        19.79        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 
        2.50         4.14        64.80       126.12         7.99         9.01 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 
       95.34         4.96        47.97         2.10        36.13        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.02        25.94        34.09        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
       54.90         3.48        84.49        19.73         7.13        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 
        6.38        21.99         5.98        24.66        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5630 
       16.11         5.03        18.64         4.18        35.54        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        25.48        20.42         9.83        12.13 
TCGA-DQ-7595 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
       10.65         0.43         0.49        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43        13.38         1.87         4.34         0.07 
TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A633 TCGA-HD-A6I0 
        0.82         1.81         1.45         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.30        13.51 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67A 
        5.29        11.54        11.84         7.33         1.12        12.89 
TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65        29.92        54.31        23.70        10.85 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.07               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            142.49             210.94 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             11.84              17.59 
[1] "0.1 - 142.5 (11.8)" "0.1 - 210.9 (17.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D61V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11P LOSS MUTATED         5       12        12        47         4
  11P LOSS WILD-TYPE      19       46        47       127         2
D61V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  11P LOSS MUTATED   10 23 20 28
  11P LOSS WILD-TYPE 27 72 56 90
D61V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               10                 27
  T2               23                 72
  T3               20                 56
  T4               28                 90
                    vv
clus                 N0 N1 N2 N3
  11P LOSS MUTATED   27  7 35  4
  11P LOSS WILD-TYPE 98 38 82  1
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               27                 98
  N1                7                 38
  N2               35                 82
  N3                4                  1
D61V6, binary
                    cls
clus                  0  1
  11P LOSS MUTATED   22  7
  11P LOSS WILD-TYPE 67 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     22    7
  11P LOSS WILD-TYPE   67   21
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               22                 67
  MX                7                 21
D61V7, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    24  76
  11P LOSS WILD-TYPE  83 190
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     24   76
  11P LOSS WILD-TYPE   83  190
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               24                 83
  MALE                 76                190
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                     100
  11P LOSS WILD-TYPE                                   268
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11P LOSS MUTATED                                                             0
  11P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11P LOSS MUTATED                                                     0
  11P LOSS WILD-TYPE                                                   4
D61V8, multiclass
                                                             clus
vv                                                            11P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    100
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            11P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      268
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D61V9, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    21  79
  11P LOSS WILD-TYPE  53 220
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     21   79
  11P LOSS WILD-TYPE   53  220
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                21                 53
  YES               79                220
D61V10, continuous
D61V11, continuous
D61V12, continuous

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    74  46
  11Q LOSS WILD-TYPE 156  92
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               120                248 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                46                 92 
$`11Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 
       15.16        13.64        37.28         9.07         8.15         6.21 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-7866 
       12.99         3.72         7.76        11.54         5.65        20.98 
TCGA-BB-7870 TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4735 
       37.87        71.05         6.38        20.15         5.13        21.11 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 
       34.68        35.67        12.39        35.54         8.28        11.54 
TCGA-CN-5366 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6020 
       11.84         9.01        13.94        12.20        14.24         3.19 
TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 
        9.07         5.82         2.73         3.91         3.68         1.51 
TCGA-CN-A49B TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 
       14.70         5.75        12.07        48.16        10.42        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CR-5243 TCGA-CR-5248 
       32.35         4.21        14.96        26.76        84.23        54.64 
TCGA-CR-5249 TCGA-CR-6470 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6487 
       37.87        50.01        16.90         6.02        10.22         7.66 
TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7399 
        3.42         0.99         9.17        19.92        27.02         5.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
       48.36        17.16       129.21        17.95       107.51        94.85 
TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
       13.35        60.49        21.04         9.57        90.08         9.70 
TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6961 
        5.46        21.86        26.43       126.08        12.03         2.50 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7247 
      111.12        18.81        12.66         5.23         1.84        18.97 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7422 TCGA-CV-7433 
       18.41        57.47         0.46        22.85        34.09        19.73 
TCGA-CV-7435 TCGA-CV-A6JE TCGA-CX-7082 TCGA-D6-6825 TCGA-D6-A4Z9 TCGA-DQ-5624 
      142.49        24.66        10.39        16.11         3.68        58.42 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 
       14.04        18.90        25.48        12.13        12.10        11.18 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A623 TCGA-H7-8502 
       18.54        16.11         0.49         3.02         0.20         4.34 
TCGA-HD-7753 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        0.16         1.45        34.75        11.84        13.51        14.47 
TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67D TCGA-MT-A67G TCGA-P3-A5QF 
       11.54         0.46         1.12         1.84         3.65        10.85 

$`11Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 
        9.30        23.74        42.31        57.90        17.10        23.84 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       20.48        53.75        57.44        21.17        14.79         2.07 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       29.42        16.83         7.10         5.95         7.82         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 
       17.59        13.87        22.59        14.04        14.33        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        0.16         0.13         6.31        23.70        15.95         4.67 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       15.19        22.78        21.11        12.99        17.79        14.33 
TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5364 
       26.63        13.05        16.04        16.83         8.58        16.21 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 
       11.57        12.49         8.52        22.45        14.73        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       14.24         1.48        12.85         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A63U TCGA-CN-A63V TCGA-CQ-5324 
        1.38         3.75         3.29        17.26        15.88        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
       11.21         4.21        28.60        32.35        34.75        13.25 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        43.00        29.59 
TCGA-CR-5247 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       11.77        26.24        58.42        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       18.51        11.90        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 
       35.84         3.06        24.95        29.23        31.96        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 
        5.13        35.41        29.92       139.40       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 
       19.20        76.47        91.50        80.12        17.06        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 
       86.83        48.59         7.07        43.23        40.96        62.43 
TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6948 
        2.14        20.52         4.70        11.24        19.79        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         4.14        64.80       126.12 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        36.13        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 
       89.33         9.67        25.02        25.94         0.07       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD 
       84.49         7.13        16.60         6.38        21.99         5.98 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
       23.01         2.53         5.03        18.64         3.45         4.18 
TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7591 
        3.42        35.54        16.96        33.86        18.02        20.42 
TCGA-DQ-7592 TCGA-DQ-7595 TCGA-F7-8489 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        9.83        10.65         0.43        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 
        0.46         0.43        13.38         1.87         0.07         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.02         1.81         0.99         0.99         1.61         0.92 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61K TCGA-IQ-A61O 
       15.95         4.01        14.50        19.30         5.29        11.84 
TCGA-KU-A66S TCGA-MT-A67A TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 
        7.33        12.89         3.65         8.32        29.92        15.75 
TCGA-P3-A5QA TCGA-P3-A5QE 
       54.31        23.70 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.16               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            142.49             210.94 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            12.825             17.010 
[1] "0.2 - 142.5 (12.8)" "0.1 - 210.9 (17.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
[1] "hr=" "1.2"
D62V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11Q LOSS MUTATED         7       15        13        57         3
  11Q LOSS WILD-TYPE      17       43        46       117         3
D62V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  11Q LOSS MUTATED   12 27 22 35
  11Q LOSS WILD-TYPE 25 68 54 83
D62V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1               12                 25
  T2               27                 68
  T3               22                 54
  T4               35                 83
                    vv
clus                 N0 N1 N2 N3
  11Q LOSS MUTATED   32 10 45  2
  11Q LOSS WILD-TYPE 93 35 72  3
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               32                 93
  N1               10                 35
  N2               45                 72
  N3                2                  3
D62V6, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED   27  9
  11Q LOSS WILD-TYPE 62 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     27    9
  11Q LOSS WILD-TYPE   62   19
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               27                 62
  MX                9                 19
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    23  97
  11Q LOSS WILD-TYPE  84 169
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     23   97
  11Q LOSS WILD-TYPE   84  169
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               23                 84
  MALE                 97                169
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                     119
  11Q LOSS WILD-TYPE                                   249
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  11Q LOSS MUTATED                                                             0
  11Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  11Q LOSS MUTATED                                                     1
  11Q LOSS WILD-TYPE                                                   3
D62V8, multiclass
                                                             clus
vv                                                            11Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    119
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            11Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      249
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D62V9, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    29  91
  11Q LOSS WILD-TYPE  45 208
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     29   91
  11Q LOSS WILD-TYPE   45  208
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                29                 45
  YES               91                208
D62V10, continuous
D62V11, continuous
D62V12, continuous

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    13  13
  12P LOSS WILD-TYPE 217 125
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                26                342 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                13                125 
$`12P LOSS MUTATED`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       37.28         8.15         6.21        12.99         3.72         7.76 
TCGA-BA-A6DA TCGA-BA-A6DE TCGA-BB-8596 TCGA-CN-5355 TCGA-CN-5365 TCGA-CN-5374 
       11.54         5.95        71.05        16.04        11.54         9.01 
TCGA-CR-6484 TCGA-CR-7377 TCGA-CR-7389 TCGA-CV-6441 TCGA-CV-7090 TCGA-CV-7100 
       11.64         9.17        12.89         9.57       126.12         9.01 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7432 TCGA-D6-6826 TCGA-DQ-5631 TCGA-HD-8224 
        2.10        18.41        84.49         5.03        18.02         1.81 
TCGA-IQ-A61E TCGA-MZ-A6I9 
       19.30         8.32 

$`12P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         9.07        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90        17.10        23.84        20.48        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB 
       21.17        14.79         2.07        29.42        16.83         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.65         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z 
       20.98        37.87        14.04        14.33        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
        0.13         6.31        23.70        15.95         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       20.15         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99        17.79        14.33        34.68        26.63        35.67 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       13.05        16.83         8.58        12.39        35.54         8.28 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        12.20        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48        12.85         3.19         9.07         6.61        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V 
        3.75         3.29         1.51        14.70        17.26        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       54.54        46.75        29.46        45.99        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       139.40        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95       107.51        94.85        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        40.96        21.04        62.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 
       64.80       111.12        18.81        12.66         7.99         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97        36.13        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        16.27        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
       23.01         2.53        16.11        18.64         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.42        35.54        16.96        33.86 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.20         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.43         0.20        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.02         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       11.84        13.51        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65        29.92        15.75        54.31        23.70        10.85 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              1.81               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            126.12             210.94 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            10.555             16.160 
[1] "1.8 - 126.1 (10.6)" "0.1 - 210.9 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D63V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12P LOSS MUTATED         0        4         4        12         1
  12P LOSS WILD-TYPE      24       54        55       162         5
D63V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     0   8   4   9
  12P LOSS WILD-TYPE  37  87  72 109
D63V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                0                 37
  T2                8                 87
  T3                4                 72
  T4                9                109
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED     7   2   8   1
  12P LOSS WILD-TYPE 118  43 109   4
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                7                118
  N1                2                 43
  N2                8                109
  N3                1                  4
D63V6, binary
                    cls
clus                  0  1
  12P LOSS MUTATED    6  2
  12P LOSS WILD-TYPE 83 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      6    2
  12P LOSS WILD-TYPE   83   26
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                6                 83
  MX                2                 26
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     9  17
  12P LOSS WILD-TYPE  98 249
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      9   17
  12P LOSS WILD-TYPE   98  249
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                9                 98
  MALE                 17                249
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                      26
  12P LOSS WILD-TYPE                                   342
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12P LOSS MUTATED                                                             0
  12P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12P LOSS MUTATED                                                     0
  12P LOSS WILD-TYPE                                                   4
D63V8, multiclass
                                                             clus
vv                                                            12P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     26
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      342
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D63V9, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     6  20
  12P LOSS WILD-TYPE  68 279
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      6   20
  12P LOSS WILD-TYPE   68  279
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 6                 68
  YES               20                279
D63V10, continuous
D63V11, continuous
D63V12, continuous

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    15   7
  12Q LOSS WILD-TYPE 215 131
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                22                346 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 7                131 
$`12Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DE TCGA-BB-8596 TCGA-CN-5355 
        6.21         3.72         7.76         5.95        71.05        16.04 
TCGA-CN-5374 TCGA-CN-6024 TCGA-CN-6994 TCGA-CR-6493 TCGA-CR-7390 TCGA-CV-6003 
        9.01         7.36         3.91         9.27        29.82        40.96 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7432 
      126.12       111.12        47.97         2.10        18.41        84.49 
TCGA-CX-7219 TCGA-F7-7848 TCGA-IQ-A61G TCGA-MZ-A6I9 
       27.22        18.54        11.84         8.32 

$`12Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
       23.74        42.31        57.90        17.10        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75        57.44        21.17        14.79         2.07        12.99 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF 
       29.42        16.83        11.54         7.10         5.65         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.04        14.33        20.52         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       15.19        22.78        21.11        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        34.68        26.63        35.67        13.05        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        22.45        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
       12.85         3.19         9.07         6.61        13.94         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       14.70        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       45.99        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 
        7.66        12.46        11.51        15.75        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        23.05        86.83        48.59        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       43.23        21.04        62.43         9.57        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7095 
        8.38        28.31         2.50         4.14        64.80        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 TCGA-CV-7406 
       17.10        95.34         4.96        11.87        36.13        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
        5.98        24.66        10.39        10.55         7.76        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       25.41         9.60        23.01         2.53        16.11         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       18.64         3.45         4.18         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       35.54        16.96        33.86        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J 
       11.18        16.11         0.43         0.49         3.02        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        19.30        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W 
       14.47         5.29        11.54        11.84         7.33         0.46 
TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 
        1.12        12.89         1.84         3.65         3.65        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       15.75        54.31        23.70        10.85 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              2.10               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            126.12             210.94 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            13.940             15.815 
[1] "2.1 - 126.1 (13.9)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
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        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D64V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12Q LOSS MUTATED         1        5         2        12         0
  12Q LOSS WILD-TYPE      23       53        57       162         6
D64V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED     1   8   1  10
  12Q LOSS WILD-TYPE  36  87  75 108
D64V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                1                 36
  T2                8                 87
  T3                1                 75
  T4               10                108
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED     7   3   6   0
  12Q LOSS WILD-TYPE 118  42 111   5
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                7                118
  N1                3                 42
  N2                6                111
  N3                0                  5
D64V6, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    5  2
  12Q LOSS WILD-TYPE 84 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      5    2
  12Q LOSS WILD-TYPE   84   26
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                5                 84
  MX                2                 26
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     5  17
  12Q LOSS WILD-TYPE 102 249
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      5   17
  12Q LOSS WILD-TYPE  102  249
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                5                102
  MALE                 17                249
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                      22
  12Q LOSS WILD-TYPE                                   346
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  12Q LOSS MUTATED                                                             0
  12Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  12Q LOSS MUTATED                                                     0
  12Q LOSS WILD-TYPE                                                   4
D64V8, multiclass
                                                             clus
vv                                                            12Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     22
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            12Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      346
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D64V9, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     3  19
  12Q LOSS WILD-TYPE  71 280
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3   19
  12Q LOSS WILD-TYPE   71  280
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 3                 71
  YES               19                280
D64V10, continuous
D64V11, continuous
D64V12, continuous

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    80  39
  13Q LOSS WILD-TYPE 150  99
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               119                249 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                 99 
$`13Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
       15.16         9.07        42.31        17.10        57.44        21.17 
TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        2.07         3.72         7.76        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7864 
        5.65         5.95         9.04         4.37        17.59        22.59 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4723 
       37.87        14.04        71.05        20.52         0.16        23.70 
TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5363 
       15.95        15.19        34.68        26.63        35.54         8.28 
TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       11.57        22.45         9.01        14.73        13.94        12.20 
TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 
        1.48         3.19         9.07         7.36         1.38         3.91 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-6225 
        1.51        48.16        29.46        32.35        32.35        13.25 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CR-5249 TCGA-CR-6472 TCGA-CR-6477 TCGA-CR-6478 
       45.27        16.70        37.87        34.52        16.90         6.02 
TCGA-CR-6481 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7379 
       10.22         7.66        47.18        24.95         0.99        34.06 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7397 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5434 
       17.13        32.78         7.10        29.92        48.36       108.33 
TCGA-CV-5441 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       94.85        60.49         7.07        26.43        11.24       126.08 
TCGA-CV-6950 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7099 
       15.06        65.82         4.14        64.80       111.12         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7235 
        9.01         1.84        52.31        12.89        21.76        56.68 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7415 
       36.00        26.20        17.10        18.41        57.47        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7440 
       25.94         0.07        34.09         3.48       142.49        21.99 
TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-A4Z9 
       24.66        10.39        27.22        16.11         3.45         3.68 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
       33.86        14.04        18.90        10.65        11.18        18.54 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A623 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8635 
        0.49         3.02         0.20         0.16         1.02         0.99 
TCGA-IQ-A61O TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q6 TCGA-P3-A5QA 
       11.84         3.65         8.32        15.75        54.31 

$`13Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        13.64        37.28         8.15        23.74        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 
       23.84        20.48        53.75         6.21        14.79        12.99 
TCGA-BA-A4IF TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 
       29.42         7.82         6.12        95.05         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 
       10.19        13.87        20.98        14.33         0.13         6.31 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        20.15         5.13        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 
       21.11        12.99        17.79        14.33        35.67        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 
       16.04        16.83         8.58        12.39        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       11.84        12.49         8.52        14.24        10.36        14.24 
TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 
       12.85         6.61        13.94         5.82         2.73         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.75         3.29        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       12.07        39.68        21.50         2.93        54.54        46.75 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 
       34.75         4.21        14.96        26.76        48.03        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5250 
       43.00        29.59        84.23        11.77        54.64        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6480 
       58.42        50.01        39.52        36.99        18.51        11.90 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64        12.46        11.51        15.75         9.27 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7386 
       29.23        31.96         9.17        19.92        26.17        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 
       29.52        30.54         5.13         5.92        35.41       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21        47.28        19.20        17.95       107.51 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        91.50        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       86.83        48.59        43.23        40.96        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.57        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
        4.70        21.86        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
        6.08        53.92        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7178 
        2.50       126.12        18.81        12.66         5.23        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 
       10.75       114.94         4.73        47.47        31.33        18.97 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.02       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-A6JD TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
        5.98        10.55         7.76        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4ZB 
       23.01         2.53         5.03        18.64         4.18         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 
       58.42        35.54        16.96        18.02        25.48        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50J 
        9.83        12.13        12.10        16.11         0.43        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.46         0.43        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        4.34         0.07         0.82         1.81         1.45         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L 
       19.30        11.84        13.51        14.47         5.29        11.54 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        23.70        10.85 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.07               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            142.49             210.94 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             15.95              15.75 
[1] "0.1 - 142.5 (15.9)" "0.1 - 210.9 (15.8)"
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"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  13Q LOSS MUTATED        11       13        15        60         2
  13Q LOSS WILD-TYPE      13       45        44       114         4
D65V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  13Q LOSS MUTATED   15 29 18 40
  13Q LOSS WILD-TYPE 22 66 58 78
D65V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               15                 22
  T2               29                 66
  T3               18                 58
  T4               40                 78
                    vv
clus                 N0 N1 N2 N3
  13Q LOSS MUTATED   34 12 44  2
  13Q LOSS WILD-TYPE 91 33 73  3
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               34                 91
  N1               12                 33
  N2               44                 73
  N3                2                  3
D65V6, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED   30  7
  13Q LOSS WILD-TYPE 59 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     30    7
  13Q LOSS WILD-TYPE   59   21
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               30                 59
  MX                7                 21
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    34  86
  13Q LOSS WILD-TYPE  73 180
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     34   86
  13Q LOSS WILD-TYPE   73  180
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               34                 73
  MALE                 86                180
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                     119
  13Q LOSS WILD-TYPE                                   249
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  13Q LOSS MUTATED                                                             1
  13Q LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  13Q LOSS MUTATED                                                     0
  13Q LOSS WILD-TYPE                                                   4
D65V8, multiclass
                                                             clus
vv                                                            13Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    119
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            13Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      249
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D65V9, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    23  97
  13Q LOSS WILD-TYPE  51 202
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     23   97
  13Q LOSS WILD-TYPE   51  202
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                23                 51
  YES               97                202
D65V10, continuous
D65V11, continuous
D65V12, continuous

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    19  17
  14Q LOSS WILD-TYPE 211 121
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                36                332 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                17                121 
$`14Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 
        9.07        42.31        21.17        14.79         2.07        16.83 
TCGA-BB-7862 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-A63U 
       17.59        12.85         3.19         2.73         3.68        17.26 
TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CR-5247 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-7365 
       10.42        32.88        11.77        50.01        34.52        39.12 
TCGA-CR-7398 TCGA-CV-5966 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-6962 
        5.13        17.06        90.08         9.70        21.86         4.14 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7435 TCGA-D6-6826 
       18.41        57.47        34.09       100.54       142.49         5.03 
TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-F7-7848 TCGA-HD-8224 TCGA-MZ-A6I9 
        4.18        18.02        25.48        18.54         1.81         8.32 

$`14Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90        17.10        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA 
        6.21        12.99         3.72         7.76        29.42        11.54 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.65         5.95         7.82         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.04         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       20.52         0.16         0.13         6.31        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        20.15         5.13        15.19        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        35.67        13.05        16.04        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61        13.94         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V 
        3.91         3.75         3.29         1.51        14.70        15.88 
TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        5.75        12.07        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       54.54        46.75        29.46        45.99        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       43.00        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       58.42        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        47.18        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95       107.51        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       76.47        91.50        80.12        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        60.49         7.07        43.23        40.96        21.04 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       62.43         9.57         2.14         5.46        20.52         4.70 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         2.50        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        36.13        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
        0.07        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       21.99         5.98        24.66        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 
       16.11        18.64         3.45         3.68         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       35.54        16.96        33.86        14.04        18.90        20.42 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 
        9.83        12.13        12.10        10.65        11.18        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        0.46         0.43         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         0.82         1.02         1.45         0.99 
TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         1.61         0.92        34.75        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       14.50        19.30        11.84        13.51        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.54        11.84         7.33         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        1.84         3.65         3.65        29.92        15.75        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              1.81               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            142.49             210.94 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             17.16              15.47 
[1] "1.8 - 142.5 (17.2)" "0.1 - 210.9 (15.5)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
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        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D66V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  14Q LOSS MUTATED         0        6         4        17         0
  14Q LOSS WILD-TYPE      24       52        55       157         6
D66V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED     0   8   9  11
  14Q LOSS WILD-TYPE  37  87  67 107
D66V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                0                 37
  T2                8                 87
  T3                9                 67
  T4               11                107
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED    10   5   9   0
  14Q LOSS WILD-TYPE 115  40 108   5
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               10                115
  N1                5                 40
  N2                9                108
  N3                0                  5
D66V6, binary
                    cls
clus                  0  1
  14Q LOSS MUTATED    6  1
  14Q LOSS WILD-TYPE 83 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      6    1
  14Q LOSS WILD-TYPE   83   27
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0                6                 83
  MX                1                 27
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     6  30
  14Q LOSS WILD-TYPE 101 236
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      6   30
  14Q LOSS WILD-TYPE  101  236
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                6                101
  MALE                 30                236
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                      36
  14Q LOSS WILD-TYPE                                   332
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  14Q LOSS MUTATED                                                             0
  14Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  14Q LOSS MUTATED                                                     0
  14Q LOSS WILD-TYPE                                                   4
D66V8, multiclass
                                                             clus
vv                                                            14Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     36
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            14Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      332
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D66V9, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     9  27
  14Q LOSS WILD-TYPE  65 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      9   27
  14Q LOSS WILD-TYPE   65  272
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 9                 65
  YES               27                272
D66V10, continuous
D66V11, continuous
D66V12, continuous

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    36  29
  15Q LOSS WILD-TYPE 194 109
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                65                303 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                29                109 
$`15Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-7269 
       42.31        57.90        17.10        57.44         6.21         7.76 
TCGA-BA-A4IF TCGA-BA-A6DE TCGA-BB-4225 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-4728 
       29.42         5.95         4.60        37.87        15.95        20.15 
TCGA-CN-4730 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5370 TCGA-CN-6012 TCGA-CN-6021 
       15.19        12.39         8.28         8.52        12.20         9.07 
TCGA-CN-6024 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5326 TCGA-CQ-5330 
        7.36         3.75         3.29         1.51         2.93        29.46 
TCGA-CQ-5332 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CR-6478 
       10.42        32.35         4.21        26.76        16.70         6.02 
TCGA-CR-7402 TCGA-CV-5435 TCGA-CV-5441 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5976 
       29.92        47.28        94.85        17.06        13.35        48.59 
TCGA-CV-5977 TCGA-CV-6441 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6954 
       60.49         9.57        20.52        26.43        42.35        65.82 
TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7104 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7407 
        4.14        18.81        12.89        36.00        18.97        35.54 
TCGA-CV-7424 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7219 TCGA-D6-6517 
       14.86        84.49       142.49         6.38        27.22         9.60 
TCGA-D6-6823 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-F7-A50I 
       23.01         5.03        58.42        18.02         9.83         3.02 
TCGA-F7-A61S TCGA-F7-A623 TCGA-IQ-A61E TCGA-IQ-A61O TCGA-P3-A5QA 
        0.10         0.20        19.30        11.84        54.31 

$`15Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 
       23.74        23.84        20.48        53.75        21.17        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB 
        2.07        12.99         3.72        16.83        11.54         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        5.65         7.82         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 
       14.04        14.33        71.05        20.52         0.16         0.13 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4731 
        6.31        23.70         4.67         6.38         5.13        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        35.67        13.05        16.04        16.83         8.58 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       35.54        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       22.45         9.01        14.73        13.94        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 
       14.24         1.48        12.85         3.19         6.61        13.94 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-A49B 
        1.38         5.82         2.73         3.91         3.68        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       17.26        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       21.50        54.54        46.75        45.99        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 
       28.60        32.35        32.88        34.75        13.25        14.96 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       48.03        45.27        33.07        43.00        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 
       39.52        34.52        36.99        18.51        16.90        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
      108.33        19.20        17.95       107.51        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       80.12        23.05        86.83         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       21.04        62.43        90.08         2.14         9.70         5.46 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       25.02        25.94         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        16.27        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 
       16.60        21.99         5.98        24.66        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 
        7.76        13.25        25.41         2.53        16.11        18.64 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68         3.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       33.86        14.04        18.90        25.48        20.42        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
        0.49        19.20        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 
        1.81         1.45         0.99         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61H 
       34.75        15.95         4.01        14.50        11.84        13.51 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       14.47         5.29        11.54         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.65         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
       15.75        23.70        10.85 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.10               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            142.49             210.94 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             16.70              15.75 
[1] "0.1 - 142.5 (16.7)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D67V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  15Q LOSS MUTATED         3       10         9        31         2
  15Q LOSS WILD-TYPE      21       48        50       143         4
D67V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED     4  16  18  18
  15Q LOSS WILD-TYPE  33  79  58 100
D67V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                4                 33
  T2               16                 79
  T3               18                 58
  T4               18                100
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED    17   5  24   2
  15Q LOSS WILD-TYPE 108  40  93   3
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               17                108
  N1                5                 40
  N2               24                 93
  N3                2                  3
D67V6, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED   10  4
  15Q LOSS WILD-TYPE 79 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     10    4
  15Q LOSS WILD-TYPE   79   24
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               10                 79
  MX                4                 24
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    18  48
  15Q LOSS WILD-TYPE  89 218
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     18   48
  15Q LOSS WILD-TYPE   89  218
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               18                 89
  MALE                 48                218
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                      65
  15Q LOSS WILD-TYPE                                   303
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  15Q LOSS MUTATED                                                             1
  15Q LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  15Q LOSS MUTATED                                                     0
  15Q LOSS WILD-TYPE                                                   4
D67V8, multiclass
                                                             clus
vv                                                            15Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     65
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            15Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      303
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D67V9, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    15  51
  15Q LOSS WILD-TYPE  59 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     15   51
  15Q LOSS WILD-TYPE   59  248
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                15                 59
  YES               51                248
D67V10, continuous
D67V11, continuous
D67V12, continuous

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    27  18
  16P LOSS WILD-TYPE 203 120
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                45                323 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                18                120 
$`16P LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-7269 TCGA-BA-A6DE TCGA-BB-7870 TCGA-BB-8596 
       13.64         9.07         7.76         5.95        37.87        71.05 
TCGA-BB-8601 TCGA-CN-4729 TCGA-CN-5363 TCGA-CN-5374 TCGA-CQ-5330 TCGA-CQ-6224 
       20.52         5.13         8.28         9.01        29.46        32.35 
TCGA-CR-6473 TCGA-CR-6484 TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7398 
       36.99        11.64        40.90         0.99        17.13         5.13 
TCGA-CR-7399 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6962 
        5.92        19.20        60.49        26.43        15.06         4.14 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7407 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7424 
       56.68         4.73        35.54        25.02        25.94        14.86 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-A4Z9 TCGA-F7-A50G 
        3.48        84.49         6.38        10.39         3.68         0.49 
TCGA-F7-A50I TCGA-HD-7753 TCGA-HD-8224 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H 
        3.02         0.16         1.81        19.30        11.84        13.51 
TCGA-IQ-A61K TCGA-MZ-A6I9 TCGA-P3-A5Q6 
        5.29         8.32        15.75 

$`16P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90        17.10        23.84        20.48        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        6.21        21.17        14.79         2.07        12.99         3.72 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF 
       29.42        16.83        11.54         7.10         5.65         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        20.98        14.04 
TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33         0.16         0.13         6.31        23.70        15.95 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        20.15        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       21.11        12.99        17.79        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       35.67        13.05        16.04        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       35.54        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45        14.73        13.94        12.20        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       10.36        14.24         1.48        12.85         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61        13.94         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        3.91         3.68         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       17.26        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        54.54        46.75        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        43.00        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        39.12        47.34        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       139.40        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        17.95       107.51        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       91.50        80.12        17.06        13.35        23.05        86.83 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59         7.07        43.23        40.96        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.57        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         2.50        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
      114.94        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        57.47        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67         0.46        22.85         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 
       56.48       156.49        54.90        16.27        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 
      142.49        16.60        21.99         5.98        24.66        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        25.41         9.60        23.01 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53        16.11         5.03        18.64         3.45         4.18 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.42        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 
       19.20         0.10        12.62         0.46         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.87         4.34         0.07         0.82         1.02 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61J TCGA-IQ-A61L TCGA-IQ-A61O 
       15.95         4.01        14.50        14.47        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65        29.92        54.31        23.70        10.85 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.16               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             84.49             210.94 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             11.84              16.11 
[1] "0.2 - 84.5 (11.8)"  "0.1 - 210.9 (16.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
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        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D68V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16P LOSS MUTATED         3        6         7        23         1
  16P LOSS WILD-TYPE      21       52        52       151         5
D68V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED     3  13  12  12
  16P LOSS WILD-TYPE  34  82  64 106
D68V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                3                 34
  T2               13                 82
  T3               12                 64
  T4               12                106
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED    10   6  18   1
  16P LOSS WILD-TYPE 115  39  99   4
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               10                115
  N1                6                 39
  N2               18                 99
  N3                1                  4
D68V6, binary
                    cls
clus                  0  1
  16P LOSS MUTATED   11  6
  16P LOSS WILD-TYPE 78 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     11    6
  16P LOSS WILD-TYPE   78   22
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               11                 78
  MX                6                 22
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    16  29
  16P LOSS WILD-TYPE  91 237
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     16   29
  16P LOSS WILD-TYPE   91  237
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               16                 91
  MALE                 29                237
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                      45
  16P LOSS WILD-TYPE                                   323
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16P LOSS MUTATED                                                             0
  16P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16P LOSS MUTATED                                                     0
  16P LOSS WILD-TYPE                                                   4
D68V8, multiclass
                                                             clus
vv                                                            16P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     45
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            16P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      323
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D68V9, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     5  40
  16P LOSS WILD-TYPE  69 259
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      5   40
  16P LOSS WILD-TYPE   69  259
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 5                 69
  YES               40                259
D68V10, continuous
D68V11, continuous
D68V12, continuous

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    39  16
  16Q LOSS WILD-TYPE 191 122
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                55                313 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                16                122 
$`16Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7861 
       13.64         9.07        57.90        57.44         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4729 
       17.59        20.98        37.87        71.05        20.52         5.13 
TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6021 
       16.83        35.54         8.28         9.01        12.20         9.07 
TCGA-CN-A63U TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-6481 
       17.26        32.35        84.23        58.42        36.99        10.22 
TCGA-CR-6484 TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5443 
       11.64        40.90         3.42         5.13        29.92        91.50 
TCGA-CV-5444 TCGA-CV-6940 TCGA-CV-6962 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7407 
       80.12        26.43         4.14        56.68         4.73        35.54 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 
        0.46        25.94        14.86        54.90         3.48        84.49 
TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6827 TCGA-D6-A4Z9 TCGA-DQ-7589 TCGA-DQ-7590 
        6.38        10.39        18.64         3.68        18.90        25.48 
TCGA-DQ-7591 TCGA-F7-A50I TCGA-HD-8224 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-MZ-A6I9 
       20.42         3.02         1.81        19.30        13.51         8.32 
TCGA-P3-A5QE 
       23.70 

$`16Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15        23.74        42.31 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       17.10        23.84        20.48        53.75         6.21        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       14.79         2.07        12.99         3.72         7.76        29.42 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF 
       16.83        11.54         7.10         5.65         5.95         7.82 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
        6.12        95.05         9.04         4.37        18.31        13.87 
TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       22.59        14.04        14.33         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       23.70        15.95         4.67         6.38        20.15        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       34.68        26.63        35.67        13.05        16.04         8.58 
TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
        8.52        22.45        14.73        13.94        14.24        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 
       14.24         1.48        12.85         3.19         6.61        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y 
        3.75         3.29         1.51        14.70        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        32.88        34.75        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       43.00        29.59        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.90        11.34         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7371 
        9.27        47.18        39.12        47.34        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 
       30.54         7.10         5.92        35.41        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
      107.51        94.85        76.47        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.04        62.43         9.57        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 
       21.76        71.21        10.75       114.94        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       17.82       210.94        89.33         9.67        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7430 
        0.07        34.09       100.54        56.48       156.49        16.27 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD 
       19.73         7.13       142.49        16.60        21.99         5.98 
TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       24.66        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 
        9.60        23.01         2.53        16.11         5.03         3.45 
TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.42        58.42        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.02        14.04         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J 
       11.18        18.54        16.11         0.43         0.49        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 
        0.10        12.62         0.46         0.43         0.20        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K 
       15.95         4.01        14.50        11.84        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.54        11.84         7.33         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        1.84         3.65         3.65        29.92        15.75        54.31 
TCGA-P3-A5QF 
       10.85 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.46               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             91.50             210.94 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             17.59              15.19 
[1] "0.5 - 91.5 (17.6)"  "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D69V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16Q LOSS MUTATED         2        5        10        21         1
  16Q LOSS WILD-TYPE      22       53        49       153         5
D69V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED     3  14  10  13
  16Q LOSS WILD-TYPE  34  81  66 105
D69V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1                3                 34
  T2               14                 81
  T3               10                 66
  T4               13                105
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED    11   8  15   1
  16Q LOSS WILD-TYPE 114  37 102   4
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               11                114
  N1                8                 37
  N2               15                102
  N3                1                  4
D69V6, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED    8  6
  16Q LOSS WILD-TYPE 81 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      8    6
  16Q LOSS WILD-TYPE   81   22
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0                8                 81
  MX                6                 22
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    12  43
  16Q LOSS WILD-TYPE  95 223
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     12   43
  16Q LOSS WILD-TYPE   95  223
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               12                 95
  MALE                 43                223
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                      54
  16Q LOSS WILD-TYPE                                   314
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  16Q LOSS MUTATED                                                             0
  16Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  16Q LOSS MUTATED                                                     1
  16Q LOSS WILD-TYPE                                                   3
D69V8, multiclass
                                                             clus
vv                                                            16Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     54
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            16Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      314
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D69V9, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     8  47
  16Q LOSS WILD-TYPE  66 252
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      8   47
  16Q LOSS WILD-TYPE   66  252
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 8                 66
  YES               47                252
D69V10, continuous
D69V11, continuous
D69V12, continuous

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    49  33
  17P LOSS WILD-TYPE 181 105
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                82                286 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                33                105 
$`17P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 
        8.15        42.31        20.48        57.44         6.21        14.79 
TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BA-A6DE TCGA-BB-4223 TCGA-BB-7862 TCGA-BB-7866 
        2.07        16.83         5.95        95.05        17.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4739 
       37.87        14.04        15.95        15.19        21.11        34.68 
TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6988 TCGA-CQ-6220 
       13.05        35.54        16.21         9.01         1.38        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7067 
       32.88        34.75        32.35        13.25        14.96        16.70 
TCGA-CQ-7069 TCGA-CR-6472 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-7364 TCGA-CR-7371 
       29.59        34.52        10.22        11.64        47.18         3.06 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5444 TCGA-CV-5966 
       29.82         5.13        17.16        17.95        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6961 TCGA-CV-7102 
       13.35         7.07         9.57        53.92         2.50         1.84 
TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 
       10.75        26.20        18.97        11.87        18.41        57.47 
TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7435 TCGA-CV-7440 
        0.07       100.54        14.86        54.90       142.49        21.99 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-8569 TCGA-DQ-5629 
        7.76        27.22        23.01         5.03         4.18        16.96 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7595 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A620 
       14.04        20.42        10.65         0.49        19.20         0.43 
TCGA-F7-A623 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-MT-A67D 
        0.20         0.99        15.95        11.84        13.51         1.84 
TCGA-MT-A67G TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65        15.75        54.31        23.70 

$`17P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07        23.74 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6872 
       57.90        17.10        23.84        53.75        21.17        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD 
        3.72         7.76        29.42        11.54         7.10         5.65 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.82         6.12         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       10.19        13.87        22.59        14.33        71.05        20.52 
TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
        0.16         0.13         6.31        23.70         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
       20.15         5.13        22.78        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       14.33        26.63        35.67        16.04        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39         8.28        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        22.45        14.73        13.94        12.20        14.24 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
       10.36        14.24         1.48        12.85         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61        13.94         7.36         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U 
        3.68         3.75         3.29         1.51        14.70        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 
       11.21         4.21        28.60         4.21        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       45.27        33.07        43.00        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 
       37.87        26.24        58.42        50.01        39.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6487 
       18.51        16.90         6.02        11.90        11.34         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 
       12.46        11.51        15.75         9.27        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       139.40       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5971 
       19.20       107.51        94.85        76.47        91.50        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       86.83        48.59        60.49        43.23        40.96        21.04 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       62.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 
       12.03        42.35        15.06        30.05         6.08        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        5.23        52.31        12.89        21.76        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        31.33        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 
       95.34         4.96        47.97         2.10        36.13        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       25.02        25.94        34.09        56.48       156.49         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 
        5.98        24.66        10.39        10.55        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 
        9.60         2.53        16.11        18.64         3.45         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
        3.42        58.42        35.54        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 TCGA-F7-7848 
       25.48         9.83        12.13        12.10        11.18        18.54 
TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
       16.11         0.43         3.02         0.10        12.62         0.46 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A633 TCGA-HD-A6I0 
        1.02         1.81         1.45         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61J TCGA-IQ-A61K 
       34.75         4.01        14.50        19.30        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.54        11.84         7.33         0.46         1.12        12.89 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QF 
        3.65         8.32        29.92        10.85 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.07               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            142.49             210.94 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             16.08              15.11 
[1] "0.1 - 142.5 (16.1)" "0.1 - 210.9 (15.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D70V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17P LOSS MUTATED         2       16        14        38         1
  17P LOSS WILD-TYPE      22       42        45       136         5
D70V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  17P LOSS MUTATED    7 22 19 24
  17P LOSS WILD-TYPE 30 73 57 94
D70V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1                7                 30
  T2               22                 73
  T3               19                 57
  T4               24                 94
                    vv
clus                 N0 N1 N2 N3
  17P LOSS MUTATED   28 10 27  1
  17P LOSS WILD-TYPE 97 35 90  4
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               28                 97
  N1               10                 35
  N2               27                 90
  N3                1                  4
D70V6, binary
                    cls
clus                  0  1
  17P LOSS MUTATED   20  7
  17P LOSS WILD-TYPE 69 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     20    7
  17P LOSS WILD-TYPE   69   21
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               20                 69
  MX                7                 21
D70V7, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    21  62
  17P LOSS WILD-TYPE  86 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     21   62
  17P LOSS WILD-TYPE   86  204
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               21                 86
  MALE                 62                204
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                      82
  17P LOSS WILD-TYPE                                   286
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17P LOSS MUTATED                                                             0
  17P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17P LOSS MUTATED                                                     1
  17P LOSS WILD-TYPE                                                   3
D70V8, multiclass
                                                             clus
vv                                                            17P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     82
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            17P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      286
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D70V9, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    19  64
  17P LOSS WILD-TYPE  55 235
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     19   64
  17P LOSS WILD-TYPE   55  235
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                19                 55
  YES               64                235
D70V10, continuous
D70V11, continuous
D70V12, continuous

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    19   8
  17Q LOSS WILD-TYPE 211 130
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                27                341 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 8                130 
$`17Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-4223 
        9.30        57.44         6.21        14.79         2.07        95.05 
TCGA-CN-4739 TCGA-CN-5374 TCGA-CN-6011 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       34.68         9.01        13.94        32.35        32.88        32.35 
TCGA-CQ-7067 TCGA-CR-6484 TCGA-CV-5966 TCGA-D6-6823 TCGA-D6-6826 TCGA-F7-A50G 
       16.70        11.64        17.06        23.01         5.03         0.49 
TCGA-F7-A620 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61H TCGA-MT-A67G 
        0.43         0.99        15.95        11.84        13.51         3.65 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
       15.75        54.31        23.70 

$`17Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       42.31        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       21.17        12.99         3.72         7.76        29.42        16.83 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 
       11.54         7.10         5.65         5.95         7.82         6.12 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       71.05        20.52         0.16         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        35.67        13.05        16.04        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 
       11.57        12.49         8.52        22.45        14.73        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61        13.94         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 
       14.70        17.26        15.88         5.75        12.07        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        54.54        46.75        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6223 
       45.99        10.42        11.21         4.21        28.60        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        43.00        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       139.40        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95       107.51        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       91.50        80.12        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       60.49         7.07        43.23        40.96        21.04        62.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        9.57        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        2.53        16.11        18.64         3.45         4.18         3.68 
TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.42        58.42        35.54        16.96        33.86        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        25.48        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A623 
        3.02        19.20         0.10        12.62         0.46         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A633 TCGA-HD-A6I0 
        1.02         1.81         1.45         0.99         1.61         0.92 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61J TCGA-IQ-A61K 
       34.75         4.01        14.50        19.30        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A 
       11.54        11.84         7.33         0.46         1.12        12.89 
TCGA-MT-A67D TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QF 
        1.84         3.65         8.32        29.92        10.85 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.43               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             95.05             210.94 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             14.79              15.95 
[1] "0.4 - 95.0 (14.8)"  "0.1 - 210.9 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17Q LOSS MUTATED         2        3         6        12         0
  17Q LOSS WILD-TYPE      22       55        53       162         6
D71V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED     4   9   4   7
  17Q LOSS WILD-TYPE  33  86  72 111
D71V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                4                 33
  T2                9                 86
  T3                4                 72
  T4                7                111
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED     8   5   9   0
  17Q LOSS WILD-TYPE 117  40 108   5
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                8                117
  N1                5                 40
  N2                9                108
  N3                0                  5
D71V6, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    7  7
  17Q LOSS WILD-TYPE 82 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      7    7
  17Q LOSS WILD-TYPE   82   21
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                7                 82
  MX                7                 21
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     8  20
  17Q LOSS WILD-TYPE  99 246
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8   20
  17Q LOSS WILD-TYPE   99  246
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                8                 99
  MALE                 20                246
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                      27
  17Q LOSS WILD-TYPE                                   341
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  17Q LOSS MUTATED                                                             0
  17Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  17Q LOSS MUTATED                                                     1
  17Q LOSS WILD-TYPE                                                   3
D71V8, multiclass
                                                             clus
vv                                                            17Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     27
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            17Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      341
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D71V9, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     8  20
  17Q LOSS WILD-TYPE  66 279
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8   20
  17Q LOSS WILD-TYPE   66  279
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 8                 66
  YES               20                279
D71V10, continuous
D71V11, continuous
D71V12, continuous

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    44  34
  18P LOSS WILD-TYPE 186 104
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                78                290 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                34                104 
$`18P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5557 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-A4IF TCGA-BA-A6D8 
        9.30        20.48         6.21        14.79        29.42        16.83 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BB-8601 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-4739 
        7.10         5.65        20.52         6.38        21.11        34.68 
TCGA-CN-4740 TCGA-CN-5370 TCGA-CN-6010 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6994 
       26.63         8.52        14.73         1.48        12.85         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63U TCGA-CQ-5325 TCGA-CQ-6220 
        3.68         3.75         1.51        17.26        21.50        32.35 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-6484 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7374 
       34.75        13.25        11.64        47.34        29.23         0.99 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-6003 TCGA-CV-6933 
       47.28        17.95        80.12        17.06        40.96        90.08 
TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6961 
       20.52        26.43       126.08        42.35        53.92         2.50 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7236 
      111.12        18.81        52.31        12.89        56.68         4.73 
TCGA-CV-7245 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7416 TCGA-CV-7423 
       26.20        36.13        18.41        35.54        25.02       100.54 
TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7438 TCGA-CX-7219 
       14.86         3.48        84.49        19.73         6.38        27.22 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-F7-7848 TCGA-F7-8489 
       58.42        16.96        33.86        14.04        18.54         0.43 
TCGA-F7-A50I TCGA-F7-A620 TCGA-F7-A623 TCGA-HD-7229 TCGA-IQ-7630 TCGA-IQ-A61E 
        3.02         0.43         0.20         0.07        15.95        19.30 
TCGA-IQ-A61H TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67D 
       13.51        11.54        11.84         7.33         0.46         1.84 

$`18P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 
       42.31        57.90        17.10        23.84        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DA 
       21.17         2.07        12.99         3.72         7.76        11.54 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z 
       20.98        37.87        14.04        14.33        71.05         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
        0.13         6.31        23.70        15.95         4.67        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
        5.13        15.19        22.78        21.11        12.99        17.79 
TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       14.33        35.67        13.05        16.04        16.83         8.58 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        35.54         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       11.57        12.49        22.45         9.01        13.94        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
       14.24        10.36        14.24         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
       13.94         7.36         1.38         5.82         2.73         3.29 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       14.70        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 
       11.21         4.21        28.60        32.88        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       43.00        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21       108.33        19.20       107.51        94.85        76.47 
TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       91.50        13.35        23.05        86.83        48.59        60.49 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        43.23        21.04        62.43         9.57         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        9.70         5.46         4.70        21.86        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 
       12.03        15.06        30.05         6.08        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         4.14        64.80       126.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7177 
       12.66         7.99         9.01         5.23         1.84        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       71.21        10.75       114.94        47.47        36.00        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        2.10        57.47        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 
        0.46        22.85        25.94         0.07        34.09        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
      156.49        54.90        16.27         7.13       142.49        16.60 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       21.99         5.98        24.66        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        25.41         9.60        23.01         2.53        16.11 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
        5.03        18.64         3.45         4.18         3.68         3.42 
TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       35.54        18.02        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-A50G 
       12.13        12.10        10.65        11.18        16.11         0.49 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-H7-7774 TCGA-H7-8501 
       19.20         0.10        12.62         0.46        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 
        0.99         0.99         1.61         0.92        34.75         4.01 
TCGA-IQ-7632 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K TCGA-MT-A51X TCGA-MT-A67A 
       14.50        11.84        14.47         5.29         1.12        12.89 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA 
        3.65         3.65         8.32        29.92        15.75        54.31 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            126.08             210.94 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             17.16              15.11 
[1] "0.1 - 126.1 (17.2)" "0.1 - 210.9 (15.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18P LOSS MUTATED         5       15        13        36         1
  18P LOSS WILD-TYPE      19       43        46       138         5
D72V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  18P LOSS MUTATED    8 20 16 26
  18P LOSS WILD-TYPE 29 75 60 92
D72V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                8                 29
  T2               20                 75
  T3               16                 60
  T4               26                 92
                    vv
clus                 N0 N1 N2 N3
  18P LOSS MUTATED   29 13 20  1
  18P LOSS WILD-TYPE 96 32 97  4
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               29                 96
  N1               13                 32
  N2               20                 97
  N3                1                  4
D72V6, binary
                    cls
clus                  0  1
  18P LOSS MUTATED   19  7
  18P LOSS WILD-TYPE 70 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     19    7
  18P LOSS WILD-TYPE   70   21
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               19                 70
  MX                7                 21
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    25  53
  18P LOSS WILD-TYPE  82 213
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     25   53
  18P LOSS WILD-TYPE   82  213
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               25                 82
  MALE                 53                213
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                      76
  18P LOSS WILD-TYPE                                   292
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18P LOSS MUTATED                                                             1
  18P LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18P LOSS MUTATED                                                     1
  18P LOSS WILD-TYPE                                                   3
D72V8, multiclass
                                                             clus
vv                                                            18P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     76
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            18P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      292
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D72V9, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    14  64
  18P LOSS WILD-TYPE  60 235
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     14   64
  18P LOSS WILD-TYPE   60  235
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                14                 60
  YES               64                235
D72V10, continuous
D72V11, continuous
D72V12, continuous

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    94  64
  18Q LOSS WILD-TYPE 136  74
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               158                210 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                64                 74 
$`18Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6870 
       15.16         9.30        20.48        53.75         6.21        14.79 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DB 
       12.99         3.72         7.76        29.42        16.83         7.10 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 TCGA-BB-8601 
        5.65         5.95         9.04        17.59        14.33        20.52 
TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.16        23.70        15.95         4.67         6.38        20.15 
TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
       15.19        21.11        17.79        34.68        26.63        16.04 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 
        8.28        16.21        11.84        11.57         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6994 
       14.73        13.94         1.48        12.85         6.61         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5325 
        3.68         3.75         1.51        17.26        12.07        21.50 
TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
        2.93        10.42        28.60        32.35        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.21        14.96        26.76        45.27        33.07        16.70 
TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6484 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7373 
       11.77        18.51        11.64         9.27        39.12        29.23 
TCGA-CR-7374 TCGA-CR-7377 TCGA-CR-7386 TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5435 
        0.99         9.17        47.01         5.92        29.92        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       17.95       107.51        94.85        80.12        17.06        13.35 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 
       86.83        48.59        60.49        43.23        40.96        90.08 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6948 
        9.70        20.52        26.43       126.08        12.03        42.35 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       53.92        65.82        28.31        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7235 
       18.81        12.66         5.23        12.89        10.75        56.68 
TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 
        4.73        31.33        26.20        18.97        17.10        11.87 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7423 
        2.10        18.41        35.54        17.82        25.02       100.54 
TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       14.86         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 
        6.38        21.99         7.76        27.22        25.41        23.01 
TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
       16.11         3.45         3.68        58.42        16.96        33.86 
TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       14.04        10.65        18.54         0.43         0.49         3.02 
TCGA-F7-A61W TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.20         1.87         4.34         0.07 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61G 
        1.02         1.81         0.99        15.95        19.30        11.84 
TCGA-IQ-A61H TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
       13.51        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67D TCGA-P3-A5QA 
        1.84        54.31 

$`18Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        37.28         9.07         8.15        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 
       57.90        17.10        23.84        57.44        21.17         2.07 
TCGA-BA-A6DA TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
       11.54         7.82         6.12        95.05         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4729 TCGA-CN-4731 
       14.04        71.05         0.13         6.31         5.13        22.78 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       21.11        12.99        14.33        35.67        13.05        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5374 
        8.58        12.39        35.54        11.54        12.49         9.01 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6021 
       12.20        14.24        10.36        14.24         3.19         9.07 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
       13.94         7.36         1.38         5.82         2.73         3.29 
TCGA-CN-A49B TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5327 
       14.70        15.88         5.75        48.16        39.68        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6221 
       46.75        29.46        45.99        11.21         4.21        32.88 
TCGA-CQ-6224 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       32.35        48.03        43.00        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7367 
        7.66        12.46        11.51        15.75        47.18        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7376 
       40.90        35.84         3.42         3.06        24.95        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 
       34.06        19.92        26.17        17.13        32.78        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 
       30.54         7.10         5.13        35.41        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5443 
       17.16       129.21       108.33        19.20        76.47        91.50 
TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       23.05         7.07        21.04        62.43         9.57         2.14 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6950 
        5.46         4.70        21.86        11.24        19.79        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       30.05         6.08        10.98         7.13         8.38         2.50 
TCGA-CV-6962 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 
        4.14         7.99         9.01         1.84        52.31        21.76 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 
       71.21       114.94        47.47        36.00        95.34         4.96 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       47.97        36.13        57.47       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 
        0.46        22.85        25.94         0.07        34.09        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-A6JD TCGA-CV-A6JE 
      156.49        54.90       142.49        16.60         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 
       10.39        10.55        13.25         9.60         2.53         5.03 
TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7589 
       18.64         4.18         3.42        35.54        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 
       25.48        20.42         9.83        12.13        12.10        11.18 
TCGA-F7-8298 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-H7-7774 TCGA-HD-7753 
       16.11        19.20         0.10        12.62        13.38         0.16 
TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        0.82         1.45         0.99         1.61         0.92        34.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61J TCGA-IQ-A61K TCGA-MT-A67A TCGA-MT-A67F 
        4.01        14.50        14.47         5.29        12.89         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         8.32        29.92        15.75        23.70        10.85 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            126.12             210.94 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            15.175             15.995 
[1] "0.1 - 126.1 (15.2)" "0.1 - 210.9 (16.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D73V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18Q LOSS MUTATED        11       26        25        81         3
  18Q LOSS WILD-TYPE      13       32        34        93         3
D73V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  18Q LOSS MUTATED   17 41 33 55
  18Q LOSS WILD-TYPE 20 54 43 63
D73V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               17                 20
  T2               41                 54
  T3               33                 43
  T4               55                 63
                    vv
clus                 N0 N1 N2 N3
  18Q LOSS MUTATED   49 24 56  3
  18Q LOSS WILD-TYPE 76 21 61  2
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               49                 76
  N1               24                 21
  N2               56                 61
  N3                3                  2
D73V6, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED   37 13
  18Q LOSS WILD-TYPE 52 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     37   13
  18Q LOSS WILD-TYPE   52   15
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               37                 52
  MX               13                 15
D73V7, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    38 121
  18Q LOSS WILD-TYPE  69 145
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     38  121
  18Q LOSS WILD-TYPE   69  145
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               38                 69
  MALE                121                145
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                     157
  18Q LOSS WILD-TYPE                                   211
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  18Q LOSS MUTATED                                                             1
  18Q LOSS WILD-TYPE                                                           0
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  18Q LOSS MUTATED                                                     1
  18Q LOSS WILD-TYPE                                                   3
D73V8, multiclass
                                                             clus
vv                                                            18Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    157
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        1
                                                             clus
vv                                                            18Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      211
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          3
D73V9, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    33 126
  18Q LOSS WILD-TYPE  41 173
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     33  126
  18Q LOSS WILD-TYPE   41  173
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                33                 41
  YES              126                173
D73V10, continuous
D73V11, continuous
D73V12, continuous

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    39  35
  19P LOSS WILD-TYPE 191 103
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                74                294 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                35                103 
$`19P LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-A4IF TCGA-BA-A6DA 
        9.30         8.15        57.90         6.21        29.42        11.54 
TCGA-BB-4227 TCGA-BB-8596 TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4729 TCGA-CN-4737 
        4.37        71.05         0.16        15.95         5.13        17.79 
TCGA-CN-4738 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6012 
       14.33        16.83         8.28         8.52         9.01        12.20 
TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        1.48         3.19         6.61         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
        3.75         2.93        29.46        32.35        34.75        13.25 
TCGA-CQ-7064 TCGA-CQ-7069 TCGA-CR-6477 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7370 
       45.27        29.59        16.90        47.18        39.12         3.42 
TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7398 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 
       29.23         9.17         5.13       108.33        47.28        17.95 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6940 
       43.23        40.96         9.57        90.08        20.52        26.43 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7097 
       11.24        12.03        15.06         7.13        18.81        12.66 
TCGA-CV-7180 TCGA-CV-7254 TCGA-CV-7416 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7440 
       10.75        47.97        25.02         3.48        16.27        21.99 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7592 
       16.11         5.03         4.18        58.42        14.04         9.83 
TCGA-F7-7848 TCGA-F7-A50I TCGA-F7-A61W TCGA-HD-7753 TCGA-HL-7533 TCGA-IQ-A61G 
       18.54         3.02         0.46         0.16        34.75        11.84 
TCGA-IQ-A61L TCGA-MT-A51X 
       11.54         1.12 

$`19P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64        37.28         9.07        23.74        42.31 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       17.10        23.84        20.48        53.75        57.44        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6D8 
       14.79         2.07        12.99         3.72         7.76        16.83 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
        7.10         5.65         5.95         7.82         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        9.04         4.60        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 
       22.59        20.98        37.87        14.04        14.33        20.52 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.13         6.31        23.70         4.67         6.38        20.15 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4739 
       15.19        22.78        21.11        21.11        12.99        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       26.63        35.67        13.05        16.04         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       35.54        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       22.45        14.73        13.94        14.24        10.36        14.24 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
       12.85         9.07        13.94         7.36         1.38         5.82 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.29         1.51        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
       12.07        48.16        39.68        21.50        54.54        46.75 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       45.99        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 
       32.35         4.21        14.96        26.76        48.03        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        43.00        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.51         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 
        7.66        12.46        11.51        15.75         9.27        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       40.90        35.84         3.06        24.95         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5440 
       48.36       139.40        17.16       129.21        19.20       107.51 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       94.85        76.47        91.50        80.12        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6433 
       23.05        86.83        48.59        60.49         7.07        21.04 
TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 
       62.43         2.14         9.70         5.46         4.70        21.86 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        42.35        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.80       126.12       111.12         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        1.84        52.31        12.89        21.76        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6827 
       13.25        25.41         9.60        23.01         2.53        18.64 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.45         3.68         3.42        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       18.02        18.90        25.48        20.42        12.13        12.10 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50J 
       10.65        11.18        16.11         0.43         0.49        19.20 
TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
        0.10        12.62         0.43         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.07         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.99         1.61         0.92        15.95         4.01 
TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O 
       14.50        19.30        13.51        14.47         5.29        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46        12.89         1.84         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.16               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            108.33             210.94 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            12.430             16.405 
[1] "0.2 - 108.3 (12.4)" "0.1 - 210.9 (16.4)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D74V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19P LOSS MUTATED         2       12        16        34         1
  19P LOSS WILD-TYPE      22       46        43       140         5
D74V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  19P LOSS MUTATED    3 22 18 23
  19P LOSS WILD-TYPE 34 73 58 95
D74V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1                3                 34
  T2               22                 73
  T3               18                 58
  T4               23                 95
                    vv
clus                  N0  N1  N2  N3
  19P LOSS MUTATED    22  12  23   1
  19P LOSS WILD-TYPE 103  33  94   4
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               22                103
  N1               12                 33
  N2               23                 94
  N3                1                  4
D74V6, binary
                    cls
clus                  0  1
  19P LOSS MUTATED   20  3
  19P LOSS WILD-TYPE 69 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     20    3
  19P LOSS WILD-TYPE   69   25
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               20                 69
  MX                3                 25
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    19  55
  19P LOSS WILD-TYPE  88 211
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     19   55
  19P LOSS WILD-TYPE   88  211
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               19                 88
  MALE                 55                211
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                      74
  19P LOSS WILD-TYPE                                   294
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19P LOSS MUTATED                                                             0
  19P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19P LOSS MUTATED                                                     0
  19P LOSS WILD-TYPE                                                   4
D74V8, multiclass
                                                             clus
vv                                                            19P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     74
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            19P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      294
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D74V9, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    16  58
  19P LOSS WILD-TYPE  58 241
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     16   58
  19P LOSS WILD-TYPE   58  241
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                16                 58
  YES               58                241
D74V10, continuous
D74V11, continuous
D74V12, continuous

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    35  27
  19Q LOSS WILD-TYPE 195 111
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                62                306 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                27                111 
$`19Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
        9.30         8.15        17.10         6.21        14.79         2.07 
TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DA TCGA-BB-4227 TCGA-BB-8596 TCGA-BB-8601 
        3.72        29.42        11.54         4.37        71.05        20.52 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4737 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5374 
        0.16        15.95        17.79        16.83         8.28         9.01 
TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 
        1.48         3.19         5.82         2.73         3.91         3.75 
TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-6220 TCGA-CQ-7064 TCGA-CQ-7069 TCGA-CR-6477 
        3.29         2.93        32.35        45.27        29.59        16.90 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7373 TCGA-CR-7377 TCGA-CR-7398 TCGA-CV-5432 
       39.12         3.42        29.23         9.17         5.13       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 
      108.33        47.28        17.95        43.23        40.96         9.57 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7097 
       90.08        26.43        11.24         7.13        28.31        12.66 
TCGA-CV-7180 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7429 TCGA-CV-7430 
       10.75        47.97        36.13        25.02         3.48        16.27 
TCGA-D6-6517 TCGA-D6-6826 TCGA-D6-8569 TCGA-DQ-7588 TCGA-F7-A61W TCGA-HD-7753 
        9.60         5.03         4.18        14.04         0.46         0.16 
TCGA-IQ-A61L TCGA-MT-A51X 
       11.54         1.12 

$`19Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64        37.28         9.07        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       57.90        23.84        20.48        53.75        57.44        21.17 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       12.99         7.76        16.83         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.04        14.33         0.13         6.31        23.70         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        20.15         5.13        15.19        22.78        21.11 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       21.11        12.99        14.33        34.68        26.63        35.67 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
       13.05        16.04         8.58        12.39        35.54        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        22.45 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       14.73        13.94        12.20        14.24        10.36        14.24 
TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
       12.85         9.07         6.61        13.94         7.36         1.38 
TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.68         1.51        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
       12.07        48.16        39.68        21.50        54.54        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       26.76        48.03        33.07        16.70        43.00        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        36.99        18.51         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.92        35.41        29.92        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       17.16        19.20       107.51        94.85        76.47        91.50 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       80.12        17.06        13.35        23.05        86.83        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
       60.49         7.07        21.04        62.43         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 
        5.46        20.52         4.70        21.86       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       65.82        10.98         8.38         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12       111.12        18.81         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        1.84        52.31        12.89        21.76        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 
      100.54        14.86        56.48       156.49        54.90        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        5.98        24.66        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 
       13.25        25.41        23.01         2.53        16.11        18.64 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         3.68         3.42        58.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       33.86        18.02        18.90        25.48        20.42         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       12.13        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V 
        0.43         0.49         3.02        19.20         0.10        12.62 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.43         0.20        13.38         1.87         4.34         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.61         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61O 
       19.30        11.84        13.51        14.47         5.29        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
        7.33         0.46        12.89         1.84         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        54.31        23.70        10.85 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.16               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            129.21             210.94 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             11.39              16.16 
[1] "0.2 - 129.2 (11.4)" "0.1 - 210.9 (16.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
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        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D75V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19Q LOSS MUTATED         1        8        16        29         1
  19Q LOSS WILD-TYPE      23       50        43       145         5
D75V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED     2  16  19  18
  19Q LOSS WILD-TYPE  35  79  57 100
D75V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                2                 35
  T2               16                 79
  T3               19                 57
  T4               18                100
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    18   9  22   1
  19Q LOSS WILD-TYPE 107  36  95   4
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               18                107
  N1                9                 36
  N2               22                 95
  N3                1                  4
D75V6, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED   14  3
  19Q LOSS WILD-TYPE 75 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     14    3
  19Q LOSS WILD-TYPE   75   25
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               14                 75
  MX                3                 25
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    17  45
  19Q LOSS WILD-TYPE  90 221
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     17   45
  19Q LOSS WILD-TYPE   90  221
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               17                 90
  MALE                 45                221
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                      62
  19Q LOSS WILD-TYPE                                   306
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  19Q LOSS MUTATED                                                             0
  19Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  19Q LOSS MUTATED                                                     0
  19Q LOSS WILD-TYPE                                                   4
D75V8, multiclass
                                                             clus
vv                                                            19Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     62
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            19Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      306
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D75V9, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    13  49
  19Q LOSS WILD-TYPE  61 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     13   49
  19Q LOSS WILD-TYPE   61  250
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                13                 61
  YES               49                250
D75V10, continuous
D75V11, continuous
D75V12, continuous

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    24  16
  20P LOSS WILD-TYPE 206 122
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                40                328 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                16                122 
$`20P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5152 TCGA-BA-5555 
       15.16         9.30        13.64        37.28        42.31        17.10 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4227 TCGA-BB-7866 TCGA-BB-8601 
       14.79         2.07         3.72         4.37        20.98        20.52 
TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CR-6474 TCGA-CR-6478 
       13.94         2.73         3.91         3.68        18.51         6.02 
TCGA-CR-7364 TCGA-CR-7374 TCGA-CR-7379 TCGA-CR-7383 TCGA-CV-5440 TCGA-CV-7091 
       47.18         0.99        34.06        17.13       107.51       111.12 
TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7407 
        5.23        12.89        56.68        18.97        47.97        35.54 
TCGA-CV-7418 TCGA-CV-7435 TCGA-D6-6823 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-F7-7848 
       25.94       142.49        23.01        18.90        25.48        18.54 
TCGA-F7-8298 TCGA-F7-A623 TCGA-HD-7917 TCGA-IQ-7630 
       16.11         0.20         1.02        15.95 

$`20P LOSS WILD-TYPE`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 
        9.07         8.15        23.74        57.90        23.84        20.48 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-7269 
       53.75        57.44         6.21        21.17        12.99         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        7.82         6.12        95.05         9.04         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
       14.33        71.05         0.16         0.13         6.31        23.70 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       15.95         4.67         6.38        20.15         5.13        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        8.58        12.39        35.54         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        22.45         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       14.73        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
        1.38         5.82         3.75         3.29         1.51        14.70 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
       17.26        15.88         5.75        12.07        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        54.54        46.75        29.46        45.99 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6480 
       50.01        39.52        34.52        36.99        16.90        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        24.95        29.23        31.96         9.17 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      139.40        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        23.05        86.83        48.59        60.49         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        21.04        62.43         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
      126.12        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       52.31        21.76        71.21        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87         2.10        36.13        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE 
        7.13        16.60         6.38        21.99         5.98        24.66 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        25.41 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        9.60         2.53        16.11         5.03        18.64         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.68         3.42        58.42        35.54        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       33.86        18.02        14.04        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8489 TCGA-F7-A50G TCGA-F7-A50I 
       12.10        10.65        11.18         0.43         0.49         3.02 
TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-H7-7774 
       19.20         0.10        12.62         0.46         0.43        13.38 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 
        1.87         4.34         0.07         0.16         0.82         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 
        1.45         0.99         0.99         1.61         0.92        34.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       12.89         1.84         3.65         3.65         8.32        29.92 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE TCGA-P3-A5QF 
       15.75        54.31        23.70        10.85 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.20               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            142.49             210.94 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            17.115             15.125 
[1] "0.2 - 142.5 (17.1)" "0.1 - 210.9 (15.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
  "20P LOSS MUTATED"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D76V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20P LOSS MUTATED         3        7         4        18         0
  20P LOSS WILD-TYPE      21       51        55       156         6
D76V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED     4  10   7  11
  20P LOSS WILD-TYPE  33  85  69 107
D76V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                4                 33
  T2               10                 85
  T3                7                 69
  T4               11                107
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED    15   2  12   0
  20P LOSS WILD-TYPE 110  43 105   5
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0               15                110
  N1                2                 43
  N2               12                105
  N3                0                  5
D76V6, binary
                    cls
clus                  0  1
  20P LOSS MUTATED   12  1
  20P LOSS WILD-TYPE 77 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     12    1
  20P LOSS WILD-TYPE   77   27
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               12                 77
  MX                1                 27
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     9  31
  20P LOSS WILD-TYPE  98 235
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      9   31
  20P LOSS WILD-TYPE   98  235
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                9                 98
  MALE                 31                235
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                      40
  20P LOSS WILD-TYPE                                   328
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20P LOSS MUTATED                                                             0
  20P LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20P LOSS MUTATED                                                     0
  20P LOSS WILD-TYPE                                                   4
D76V8, multiclass
                                                             clus
vv                                                            20P LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     40
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            20P LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      328
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D76V9, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     8  32
  20P LOSS WILD-TYPE  66 267
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      8   32
  20P LOSS WILD-TYPE   66  267
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 8                 66
  YES               32                267
D76V10, continuous
D76V11, continuous
D76V12, continuous

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    16   9
  20Q LOSS WILD-TYPE 214 129
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                343 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 9                129 
$`20Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-7866 TCGA-BB-8601 TCGA-CN-4729 
       42.31        14.79         2.07        20.98        20.52         5.13 
TCGA-CN-5360 TCGA-CR-5243 TCGA-CR-6473 TCGA-CR-7370 TCGA-CR-7383 TCGA-CR-7402 
       35.54        84.23        36.99         3.42        17.13        29.92 
TCGA-CV-5440 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7254 
      107.51       111.12         5.23        56.68        18.97        47.97 
TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7435 TCGA-D6-6826 TCGA-DQ-7590 TCGA-HD-7917 
       35.54        25.94       142.49         5.03        25.48         1.02 
TCGA-IQ-7630 
       15.95 

$`20Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       23.74        57.90        17.10        23.84        20.48        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         6.21        21.17        12.99         3.72         7.76 
TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE 
       29.42        16.83        11.54         7.10         5.65         5.95 
TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.82         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 
       18.31        10.19        17.59        13.87        22.59        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 
       14.04        14.33        71.05         0.16         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       23.70        15.95         4.67         6.38        20.15        15.19 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       22.78        21.11        21.11        12.99        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        8.58        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        22.45         9.01        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.94        12.20        14.24        10.36        14.24         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
       12.85         3.19         9.07         6.61        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.29         1.51        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
       12.07        48.16        39.68        21.50         2.93        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       46.75        29.46        45.99        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        43.00        29.59        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13         5.92        35.41        48.36       139.40        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        94.85 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        91.50        80.12        17.06        13.35        23.05 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       86.83        48.59        60.49         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       21.04        62.43         9.57        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       21.76        71.21        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       11.87         2.10        36.13        18.41        57.47        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 
       16.60         6.38        21.99         5.98        24.66        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        25.41         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
       23.01         2.53        16.11        18.64         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        3.68         3.42        58.42        35.54        16.96        33.86 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        20.42         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.10        10.65        11.18        18.54        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.20         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.43         0.20        13.38         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.81         1.45         0.99         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
        1.61         0.92        34.75         4.01        14.50        19.30 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
       11.84        13.51        14.47         5.29        11.54        11.84 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
        7.33         0.46         1.12        12.89         1.84         3.65 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
        3.65         8.32        29.92        15.75        54.31        23.70 
TCGA-P3-A5QF 
       10.85 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              1.02               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            142.49             210.94 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             25.48              14.96 
[1] "1.0 - 142.5 (25.5)" "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
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        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D77V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20Q LOSS MUTATED         2        6         3         6         0
  20Q LOSS WILD-TYPE      22       52        56       168         6
D77V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     2   7   3   5
  20Q LOSS WILD-TYPE  35  88  73 113
D77V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                2                 35
  T2                7                 88
  T3                3                 73
  T4                5                113
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED     8   2   4   0
  20Q LOSS WILD-TYPE 117  43 113   5
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                8                117
  N1                2                 43
  N2                4                113
  N3                0                  5
D77V6, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    4  1
  20Q LOSS WILD-TYPE 85 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      4    1
  20Q LOSS WILD-TYPE   85   27
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                4                 85
  MX                1                 27
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     6  19
  20Q LOSS WILD-TYPE 101 247
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      6   19
  20Q LOSS WILD-TYPE  101  247
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                6                101
  MALE                 19                247
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                      25
  20Q LOSS WILD-TYPE                                   343
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  20Q LOSS MUTATED                                                             0
  20Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  20Q LOSS MUTATED                                                     0
  20Q LOSS WILD-TYPE                                                   4
D77V8, multiclass
                                                             clus
vv                                                            20Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     25
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            20Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      343
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D77V9, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     4  21
  20Q LOSS WILD-TYPE  70 278
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      4   21
  20Q LOSS WILD-TYPE   70  278
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 4                 70
  YES               21                278
D77V10, continuous
D77V11, continuous
D77V12, continuous

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    81  54
  21Q LOSS WILD-TYPE 149  84
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               135                233 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                54                 84 
$`21Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
        9.30        53.75        57.44         6.21        14.79         2.07 
TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-8596 TCGA-BB-8601 
       16.83        11.54        17.59        22.59        71.05        20.52 
TCGA-C9-A47Z TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
        0.16        15.95        20.15        12.99        14.33        34.68 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5370 TCGA-CN-5374 
       35.67        13.05         8.28        11.54         8.52         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 
       14.73        12.20         1.48        12.85         9.07         6.61 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B TCGA-CQ-5323 
        3.91         3.75         3.29         1.51        14.70        48.16 
TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 
        2.93        29.46        10.42        32.35        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 
       13.25        26.76        45.27        33.07        16.70        29.59 
TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7367 
       11.77        16.90        11.64        11.51        39.12        47.34 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7388 TCGA-CR-7399 
       35.84         3.42         3.06        29.23        27.02         5.92 
TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5976 
       17.16        17.95       107.51        80.12        17.06        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6937 
       60.49         7.07        43.23        40.96         2.14        20.52 
TCGA-CV-6941 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
       11.24        65.82         7.13         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 
       64.80       126.12       111.12        12.66         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7235 TCGA-CV-7242 TCGA-CV-7245 
       12.89        21.76        10.75        56.68        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7409 
       18.97        17.10        47.97        36.13        18.41        17.82 
TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7432 TCGA-CV-7435 
       25.02        34.09       100.54        14.86        84.49       142.49 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 
       21.99        10.39         7.76        27.22        25.41        23.01 
TCGA-D6-6826 TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7588 
        5.03         3.68         3.42        58.42        16.96        14.04 
TCGA-DQ-7592 TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61W TCGA-F7-A620 
        9.83         0.49         3.02        19.20         0.46         0.43 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-A633 
        1.87         4.34         0.07         0.16         0.99         1.61 
TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61L TCGA-MT-A51X 
       19.30        11.84        13.51        14.47        11.54         1.12 
TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QF 
       15.75        54.31        10.85 

$`21Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15        23.74 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6869 
       42.31        57.90        17.10        23.84        20.48        21.17 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BA-A6DD 
       12.99         3.72         7.76        29.42         7.10         5.65 
TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        5.95         7.82         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 
        4.37        18.31        10.19        13.87        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.04        14.33         0.13         6.31        23.70         4.67 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
        6.38         5.13        15.19        22.78        21.11        21.11 
TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       17.79        26.63        16.04        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       35.54        16.21        11.84        11.57        12.49        22.45 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6023 
       13.94        14.24        10.36        14.24         3.19        13.94 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-A63U 
        7.36         1.38         5.82         2.73         3.68        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
       15.88         5.75        12.07        39.68        21.50        54.54 
TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       46.75        45.99        11.21         4.21        28.60        32.88 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
        4.21        14.96        48.03        43.00        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        18.51         6.02        11.90        10.22        11.34 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 
        7.66        12.46        15.75         9.27        47.18        40.90 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 
        5.13        35.41        29.92        48.36       139.40       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      108.33        47.28        19.20        94.85        76.47        91.50 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       13.35        23.05        86.83        21.04        62.43         9.57 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
       90.08         9.70         5.46         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-7095 TCGA-CV-7099 
        6.08        53.92        10.98        28.31        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
        9.01         1.84        71.21       114.94         4.73        47.47 
TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7406 
       31.33        95.34         4.96        11.87         2.10        57.47 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       25.94         0.07        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-A6JD 
       16.27        19.73         7.13        16.60         6.38         5.98 
TCGA-CV-A6JE TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       24.66        10.55        13.25         9.60         2.53        16.11 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
       18.64         3.45         4.18        35.54        33.86        18.02 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        25.48        20.42        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A61S TCGA-F7-A61V 
       11.18        18.54        16.11         0.43         0.10        12.62 
TCGA-F7-A623 TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.20        13.38         0.82         1.02         1.81         1.45 
TCGA-HD-8635 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.92        34.75        15.95         4.01        14.50 
TCGA-IQ-A61K TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67D 
        5.29        11.84         7.33         0.46        12.89         1.84 
TCGA-MT-A67F TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE 
        3.65         3.65         8.32        29.92        23.70 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            142.49             210.94 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             14.86              15.95 
[1] "0.1 - 142.5 (14.9)" "0.1 - 210.9 (15.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
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  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
[1] "hr=" "1.2"
D78V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  21Q LOSS MUTATED         7       22        22        66         4
  21Q LOSS WILD-TYPE      17       36        37       108         2
D78V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  21Q LOSS MUTATED    9 36 33 44
  21Q LOSS WILD-TYPE 28 59 43 74
D78V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1                9                 28
  T2               36                 59
  T3               33                 43
  T4               44                 74
                    vv
clus                 N0 N1 N2 N3
  21Q LOSS MUTATED   40 18 45  4
  21Q LOSS WILD-TYPE 85 27 72  1
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               40                 85
  N1               18                 27
  N2               45                 72
  N3                4                  1
D78V6, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED   31 13
  21Q LOSS WILD-TYPE 58 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     31   13
  21Q LOSS WILD-TYPE   58   15
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               31                 58
  MX               13                 15
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    37  99
  21Q LOSS WILD-TYPE  70 167
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     37   99
  21Q LOSS WILD-TYPE   70  167
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               37                 70
  MALE                 99                167
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                     136
  21Q LOSS WILD-TYPE                                   232
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  21Q LOSS MUTATED                                                             0
  21Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  21Q LOSS MUTATED                                                     0
  21Q LOSS WILD-TYPE                                                   4
D78V8, multiclass
                                                             clus
vv                                                            21Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    136
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            21Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      232
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D78V9, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    24 112
  21Q LOSS WILD-TYPE  50 187
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     24  112
  21Q LOSS WILD-TYPE   50  187
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                24                 50
  YES              112                187
D78V10, continuous
D78V11, continuous
D78V12, continuous

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    39  17
  22Q LOSS WILD-TYPE 191 121
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                56                312 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                17                121 
$`22Q LOSS MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6DE 
        9.30         8.15        53.75        14.79         2.07         5.95 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7861 TCGA-C9-A47Z TCGA-CN-4725 
       95.05         9.04         4.60        10.19         0.16        15.95 
TCGA-CN-4730 TCGA-CN-5355 TCGA-CN-5370 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6995 
       15.19        16.04         8.52         1.48         9.07         3.68 
TCGA-CN-6998 TCGA-CQ-5327 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CR-5248 TCGA-CR-6488 
        1.51        54.54        45.27        33.07        54.64        12.46 
TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5973 
        9.27        29.23        34.06         5.13         5.92        86.83 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6945 TCGA-CV-6962 TCGA-CV-7091 
       60.49        40.96         9.57        12.03         4.14       111.12 
TCGA-CV-7180 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7432 TCGA-D6-8569 
       10.75         9.67        25.02         0.07        84.49         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-F7-A50G TCGA-F7-A50J 
        3.68        18.02         9.83        12.13         0.49        19.20 
TCGA-F7-A623 TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-MT-A51W 
        0.20         1.61        15.95        19.30        11.84         0.46 
TCGA-MT-A67G TCGA-P3-A5QA 
        3.65        54.31 

$`22Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64        37.28         9.07        23.74        42.31 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       57.90        17.10        23.84        20.48        57.44         6.21 
TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 
       21.17        12.99         3.72         7.76        29.42        16.83 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4227 
       11.54         7.10         5.65         7.82         6.12         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A480 TCGA-CN-4722 
       14.04        14.33        71.05        20.52         0.13         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
       23.70         4.67         6.38        20.15         5.13        22.78 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       21.11        21.11        12.99        17.79        14.33        34.68 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       26.63        35.67        13.05        16.83         8.58        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       35.54         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49        22.45         9.01        14.73        13.94        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
       14.24        10.36        14.24        12.85         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
       13.94         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y 
        3.75         3.29        14.70        17.26        15.88         5.75 
TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5329 
       12.07        48.16        39.68        21.50         2.93        46.75 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        45.99        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       14.96        26.76        48.03        16.70        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        11.77        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        24.95         0.99        31.96         9.17 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       30.54         7.10        35.41        29.92        48.36       139.40 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
      107.51        94.85        76.47        91.50        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       13.35        23.05        48.59         7.07        43.23        21.04 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       62.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        1.84        52.31        12.89        21.76        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 
      210.94        89.33         0.46        22.85        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       21.99         5.98        24.66        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4ZB TCGA-DQ-5624 
       16.11         5.03        18.64         3.45         3.42        58.42 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       35.54        16.96        33.86        14.04        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 
       20.42        12.10        10.65        11.18        18.54        16.11 
TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
        0.43         3.02         0.10        12.62         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       13.38         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A6I0 
        1.02         1.81         1.45         0.99         0.99         0.92 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
       34.75         4.01        14.50        13.51        14.47         5.29 
TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
       11.54        11.84         7.33         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        3.65         8.32        29.92        15.75        23.70        10.85 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.07 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            111.12             210.94 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            10.470             16.765 
[1] "0.1 - 111.1 (10.5)" "0.1 - 210.9 (16.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
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        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A4IF         TCGA-BA-A6D8         TCGA-BA-A6DA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-A6DB         TCGA-BA-A6DD         TCGA-BA-A6DE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-A6DF         TCGA-BB-4217         TCGA-BB-4223 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4224         TCGA-BB-4225         TCGA-BB-4227 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4228         TCGA-BB-7861         TCGA-BB-7862 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7866 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-8596         TCGA-BB-8601         TCGA-C9-A47Z 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C9-A480         TCGA-CN-4722         TCGA-CN-4723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-A49B         TCGA-CN-A63U         TCGA-CN-A63V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-A63Y         TCGA-CN-A641         TCGA-CQ-5323 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5333 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5334         TCGA-CQ-6218         TCGA-CQ-6220 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7063         TCGA-CQ-7064 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7069         TCGA-CR-5243         TCGA-CR-5247 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5248         TCGA-CR-5249         TCGA-CR-5250 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6472         TCGA-CR-6473         TCGA-CR-6474 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6477         TCGA-CR-6478         TCGA-CR-6480 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6481         TCGA-CR-6482         TCGA-CR-6484 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7370         TCGA-CR-7371 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7374 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-A6JD         TCGA-CV-A6JE         TCGA-CX-7082 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-CX-7086         TCGA-CX-7219 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6515         TCGA-D6-6516         TCGA-D6-6517 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6823         TCGA-D6-6824         TCGA-D6-6825 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-D6-8568 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-8569         TCGA-D6-A4Z9         TCGA-D6-A4ZB 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-DQ-7596         TCGA-F7-7848 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-F7-8489         TCGA-F7-A50G 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-F7-A50I         TCGA-F7-A50J         TCGA-F7-A61S 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A61V         TCGA-F7-A61W         TCGA-F7-A620 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-A623         TCGA-H7-7774         TCGA-H7-8501 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-A633         TCGA-HD-A6I0         TCGA-HL-7533 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61E         TCGA-IQ-A61G         TCGA-IQ-A61H 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61J         TCGA-IQ-A61K         TCGA-IQ-A61L 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-A61O         TCGA-KU-A66S         TCGA-MT-A51W 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-MT-A51X         TCGA-MT-A67A         TCGA-MT-A67D 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MT-A67F         TCGA-MT-A67G         TCGA-MZ-A6I9 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-P3-A5Q5         TCGA-P3-A5Q6         TCGA-P3-A5QA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-P3-A5QE         TCGA-P3-A5QF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D79V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  22Q LOSS MUTATED         3       10        12        22         0
  22Q LOSS WILD-TYPE      21       48        47       152         6
D79V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED     6  15  14  12
  22Q LOSS WILD-TYPE  31  80  62 106
D79V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                6                 31
  T2               15                 80
  T3               14                 62
  T4               12                106
                    vv
clus                  N0  N1  N2  N3
  22Q LOSS MUTATED    19   9  15   0
  22Q LOSS WILD-TYPE 106  36 102   5
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               19                106
  N1                9                 36
  N2               15                102
  N3                0                  5
D79V6, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED   15  5
  22Q LOSS WILD-TYPE 74 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     15    5
  22Q LOSS WILD-TYPE   74   23
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               15                 74
  MX                5                 23
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    19  37
  22Q LOSS WILD-TYPE  88 229
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     19   37
  22Q LOSS WILD-TYPE   88  229
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               19                 88
  MALE                 37                229
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                      56
  22Q LOSS WILD-TYPE                                   312
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  22Q LOSS MUTATED                                                             0
  22Q LOSS WILD-TYPE                                                           1
                    vv
clus                 HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  22Q LOSS MUTATED                                                     0
  22Q LOSS WILD-TYPE                                                   4
D79V8, multiclass
                                                             clus
vv                                                            22Q LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     56
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                        0
                                                             clus
vv                                                            22Q LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                      312
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                  1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                          4
D79V9, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     7  49
  22Q LOSS WILD-TYPE  67 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      7   49
  22Q LOSS WILD-TYPE   67  250
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 7                 67
  YES               49                250
D79V10, continuous
D79V11, continuous
D79V12, continuous

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    36  25
  XQ LOSS WILD-TYPE 194 113
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               61               307 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               25               113 
$`XQ LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-A6D8 TCGA-BA-A6DE 
       15.16        13.64         9.07         6.21        16.83         5.95 
TCGA-BB-7862 TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-4736 
       17.59        14.04        71.05        15.95        21.11        12.99 
TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6997 TCGA-CQ-6218 
       35.54        14.73        13.94         2.73         3.29        28.60 
TCGA-CQ-6221 TCGA-CQ-6227 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CR-5248 TCGA-CR-6472 
       32.88         4.21        45.27        16.70        54.64        34.52 
TCGA-CR-6487 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7390 
        7.66         3.06         0.99        17.13        27.02        29.82 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5439 TCGA-CV-5973 TCGA-CV-5976 
        7.10         5.13         5.92        17.95        86.83        48.59 
TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7095 
        9.57         9.70        26.43        42.35        28.31        18.81 
TCGA-CV-7101 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7255 TCGA-CV-7418 TCGA-CV-7421 
        5.23        56.68         4.73         2.10        25.94         0.07 
TCGA-CV-7425 TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6827 
       56.48        16.27       142.49         6.38        10.39        18.64 
TCGA-DQ-7588 TCGA-F7-7848 TCGA-F7-A50G TCGA-F7-A61W TCGA-MZ-A6I9 TCGA-P3-A5QA 
       14.04        18.54         0.49         0.46         8.32        54.31 
TCGA-P3-A5QE 
       23.70 

$`XQ LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15        23.74        42.31        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       17.10        23.84        20.48        53.75        57.44        21.17 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF 
       14.79         2.07        12.99         3.72         7.76        29.42 
TCGA-BA-A6DA TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
       11.54         7.10         5.65         7.82         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.04         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8601 TCGA-C9-A47Z 
       22.59        20.98        37.87        14.33        20.52         0.16 
TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        0.13         6.31        23.70         4.67         6.38        20.15 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4737 TCGA-CN-4738 
        5.13        15.19        22.78        21.11        17.79        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       34.68        26.63        35.67        13.05        16.04        16.83 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        8.58        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 
       11.57        12.49         8.52        22.45         9.01        12.20 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
       14.24        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61        13.94         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U 
        3.91         3.68         3.75         1.51        14.70        17.26 
TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
       15.88         5.75        12.07        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        54.54        46.75        29.46        45.99        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       11.21         4.21        32.35        34.75        32.35        13.25 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 
       14.96        26.76        48.03        33.07        43.00        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        11.77        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.42        24.95        29.23        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 
       19.92        26.17        32.78        47.01        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7401 TCGA-CR-7402 
       31.10        29.85        29.52        30.54        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       139.40        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20       107.51        94.85        76.47        91.50        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        23.05        60.49         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 
       40.96        21.04        62.43        90.08         2.14         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       12.03        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.38         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
      126.12       111.12        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        22.85        25.02        34.09       100.54        14.86 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7085 TCGA-CX-7086 
       16.60        21.99         5.98        24.66        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        25.41         9.60        23.01         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
       16.11         5.03         3.45         4.18         3.68         3.42 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       58.42        35.54        16.96        33.86        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       25.48        20.42         9.83        12.13        12.10        10.65 
TCGA-DQ-7596 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S 
       11.18        16.11         0.43         3.02        19.20         0.10 
TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.62         0.43         0.20        13.38         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 
        0.99         0.99         1.61         0.92        34.75        15.95 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J 
        4.01        14.50        19.30        11.84        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X 
        5.29        11.54        11.84         7.33         0.46         1.12 
TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 
       12.89         1.84         3.65         3.65        29.92        15.75 
TCGA-P3-A5QF 
       10.85 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.07              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           142.49            210.94 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            15.95             15.75 
[1] "0.1 - 142.5 (15.9)" "0.1 - 210.9 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BA-A4IF        TCGA-BA-A6D8        TCGA-BA-A6DA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BA-A6DB        TCGA-BA-A6DD        TCGA-BA-A6DE        TCGA-BA-A6DF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224        TCGA-BB-4225 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861        TCGA-BB-7862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866        TCGA-BB-7870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596        TCGA-BB-8601 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C9-A47Z        TCGA-C9-A480        TCGA-CN-4722        TCGA-CN-4723 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998        TCGA-CN-A49B 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-A63U        TCGA-CN-A63V        TCGA-CN-A63Y        TCGA-CN-A641 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7063        TCGA-CQ-7064        TCGA-CQ-7065        TCGA-CQ-7067 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CQ-7069        TCGA-CR-5243        TCGA-CR-5247 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CV-A6JD        TCGA-CV-A6JE        TCGA-CX-7082        TCGA-CX-7085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7086        TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6826        TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-A4Z9        TCGA-D6-A4ZB        TCGA-DQ-5624        TCGA-DQ-5625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5629        TCGA-DQ-5630        TCGA-DQ-5631        TCGA-DQ-7588 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DQ-7589        TCGA-DQ-7590        TCGA-DQ-7591        TCGA-DQ-7592 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7593        TCGA-DQ-7594        TCGA-DQ-7595        TCGA-DQ-7596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489        TCGA-F7-A50G 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-F7-A50I        TCGA-F7-A50J        TCGA-F7-A61S        TCGA-F7-A61V 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F7-A61W        TCGA-F7-A620        TCGA-F7-A623        TCGA-H7-7774 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229        TCGA-HD-7753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224        TCGA-HD-8314 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8634        TCGA-HD-8635        TCGA-HD-A633        TCGA-HD-A6I0 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HL-7533        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61E        TCGA-IQ-A61G        TCGA-IQ-A61H        TCGA-IQ-A61J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-A61K        TCGA-IQ-A61L        TCGA-IQ-A61O        TCGA-KU-A66S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51W        TCGA-MT-A51X        TCGA-MT-A67A        TCGA-MT-A67D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A67F        TCGA-MT-A67G        TCGA-MZ-A6I9        TCGA-P3-A5Q5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-P3-A5Q6        TCGA-P3-A5QA        TCGA-P3-A5QE        TCGA-P3-A5QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  XQ LOSS MUTATED         6        6         9        28         1
  XQ LOSS WILD-TYPE      18       52        50       146         5
D80V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED     7  12  19  14
  XQ LOSS WILD-TYPE  30  83  57 104
D80V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               7                30
  T2              12                83
  T3              19                57
  T4              14               104
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED    16   7  20   1
  XQ LOSS WILD-TYPE 109  38  97   4
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0              16               109
  N1               7                38
  N2              20                97
  N3               1                 4
D80V6, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED   14  3
  XQ LOSS WILD-TYPE 75 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     14    3
  XQ LOSS WILD-TYPE   75   25
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              14                75
  MX               3                25
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    23  38
  XQ LOSS WILD-TYPE  84 228
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     23   38
  XQ LOSS WILD-TYPE   84  228
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              23                84
  MALE                38               228
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                      60
  XQ LOSS WILD-TYPE                                   308
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  XQ LOSS MUTATED                                                             0
  XQ LOSS WILD-TYPE                                                           1
                   vv
clus                HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  XQ LOSS MUTATED                                                     1
  XQ LOSS WILD-TYPE                                                   3
D80V8, multiclass
                                                             clus
vv                                                            XQ LOSS MUTATED
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                    60
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT               0
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                       1
                                                             clus
vv                                                            XQ LOSS WILD-TYPE
  HEAD AND NECK SQUAMOUS CELL CARCINOMA                                     308
  HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT                 1
  HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE                         3
D80V9, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    10  51
  XQ LOSS WILD-TYPE  64 248
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     10   51
  XQ LOSS WILD-TYPE   64  248
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO               10                64
  YES              51               248
D80V10, continuous
D80V11, continuous
D80V12, continuous
> q(save="no")
