
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/6159665/HNSC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/6154476/HNSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/HNSC-TP/6154476/HNSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/6159665/HNSC-TP.mergedcluster.txt"

nPatients in clinical file=379, in cluster file=458, common to both=379
[1]  10 379
[1] "CN_CNMF"
[1] 3
  1   2   3 
191 144  38 
  1   2   3 
191 144  38 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5  6  7 
53 67 74 53 56 61 14 
 1  2  3  4  5  6  7 
53 67 74 53 56 61 14 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
55 52 37 68 
 1  2  3  4 
55 52 37 68 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
 17  73 122 
  1   2   3 
 17  73 122 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
138 111 111 
  1   2   3 
138 111 111 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
139  82 139 
  1   2   3 
139  82 139 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
103 157 117 
  1   2   3 
103 157 117 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 14 151 212 
  1   2   3 
 14 151 212 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3   4 
 78  77 108  77 
  1   2   3   4 
 78  77 108  77 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3   4   5   6 
  4  20  68  46 132  70 
  1   2   3   4   5   6 
  4  20  68  46 132  70 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 379 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415           NA          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         722         1287         1761          520          725          623 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          189          644          450           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DA 
         395          113          236          895          512          351 
TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 
         216           NA          181           NA          186         2891 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
         275          140          133          557          310          535 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
         422          687          638         1152          427          436 
TCGA-BB-8596 TCGA-BB-8601 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4723 
        2161          624            5            4          192          721 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
         485          142          194          613          156          462 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4734 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
         693          642          226          642          395          541 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
         436         1055          810         1085          397          488 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5363 
         512          261          377         1081          193          252 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
         493          351          360          352          380           NA 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
         683          274          448          424          371          433 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
         315          433           45          391           97          276 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
         201          424          224           42          177           83 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CN-A49B 
         119           NA          114          100           46          447 
TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5324 
         525          483          175          367         1465         1207 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
         654           NA         1659         1422          896         1399 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6219 TCGA-CQ-6220 
         317          341          128          870           NA           NA 
TCGA-CQ-6221 TCGA-CQ-6222 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
        1000         1160         1057          984           NA           NA 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
          NA          814         1461         1377         1006          508 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
        1308          900         2562          358         1662         1152 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
         798         1777         1521           NA         1050         1125 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
          NA          514           NA          362          311          345 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
         354          233          379          350          479           NA 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        1435         1190         1440         1244           NA          104 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
          NA          759          889           30          972           NA 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
        1036           NA          796           NA          997         1430 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
          NA          392          907          913          946          908 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
         898          929          216          156          180         1077 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
         910         1471         4240          522         3930         3295 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
        1438          584          546         3270         2885         2326 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
        2783         2437          519          406          701         2641 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
        1478         1840          215         1315         1246          640 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
        1899           NA           NA           NA           NA           NA 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
          NA           NA           NA           NA           NA         3835 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
          NA           NA           NA         3836         3380           NA 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
          NA           NA           NA           NA         3496         1724 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
          NA         1444         1095          953          797           NA 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        1099           NA           NA           NA           NA           NA 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-7446 TCGA-CV-7568 
        4334           NA           NA           NA           NA           NA 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
          NA          750          316          321          236          828 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
          NA          773          292          700           77          490 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-D6-A4ZB 
         153          567          105          127          112          104 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        1777         1081          516         1030          548           NA 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
         575          775          621          299          369          368 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-F7-A50G 
         324          340          564          490           13           15 
TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 
          92          584            3          384           14           13 
TCGA-F7-A622 TCGA-F7-A623 TCGA-F7-A624 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
          NA            6           NA          407           57          132 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 
           2            5           25           NA           NA           31 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HD-A4C1 TCGA-HD-A633 
          55           44           30           30           NA           49 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E 
          28         1057          485          122          441          587 
TCGA-IQ-A61G TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O 
         360          411          440           NA          351          360 
TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D TCGA-MT-A67F 
         223           14           34          392           56          111 
TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QA TCGA-P3-A5QE 
         111          253          910           NA         1652          721 
TCGA-P3-A5QF 
          NA 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=136,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=246,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=93,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=80,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=24,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "NUMBERPACKYEARSSMOKED"                 
[10] "YEAROFTOBACCOSMOKINGONSET"             
[11] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 379 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 37  98  77 120 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 37  98  77 120 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 37  98  77 120 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 37  98  77 120 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
126  45 121   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
126  45 121   5 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
126  45 121   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
126  45 121   5 
PATHOLOGY.M.STAGE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=80, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=55, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=25, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1 108  83
  subtype2  99  42
  subtype3  23  13
subtype1 subtype2 subtype3 
     191      141       36 
subtype1 subtype2 subtype3 
      83       42       13 
$subtype1
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       17.10        53.75         6.21        21.17        14.79         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DE TCGA-BB-4224 
       12.99         7.76        29.42        16.83         5.95         9.04 
TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
        4.37        17.59        22.59        37.87        14.04        14.33 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         0.16        23.70        15.95         4.67         6.38 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 
        5.13        15.19        22.78        21.11        17.79        34.68 
TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       13.05        35.54        16.21        11.54        11.84        11.57 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 
       13.94        12.20        14.24         9.07         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-A49B 
        5.82         2.73         3.91         3.68         3.29        14.70 
TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6223 
       17.26        12.07         2.93        10.42        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-5243 
       32.35        13.25        14.96        33.07        16.70        84.23 
TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-6491 
       11.77        18.51        16.90         6.02        12.46        11.51 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7398 
        3.42        24.95         0.99        17.13        29.82         5.13 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
        5.92        29.92       139.40        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5444 
       47.28        19.20        17.95       107.51        94.85        80.12 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       13.35        86.83        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6940 
        9.57        90.08         9.70         5.46        20.52        26.43 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6954 
       11.24        12.03        42.35        15.06        30.05        65.82 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 
        7.13         8.38        28.31         4.14       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       18.81        12.66         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7235 TCGA-CV-7242 TCGA-CV-7243 
       21.76        71.21        10.75        56.68        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       26.20        18.97        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       18.41        35.54         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7432 
        0.07        34.09       100.54        14.86        16.27        84.49 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JE TCGA-CX-7082 TCGA-CX-7086 
      142.49        16.60        21.99        24.66        10.39         7.76 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-8568 TCGA-D6-8569 
       27.22        25.41         9.60        23.01         3.45         4.18 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        3.68         3.42        16.96        18.02        14.04        18.90 
TCGA-DQ-7592 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-A50I TCGA-F7-A61W 
        9.83        10.65        18.54        16.11         3.02         0.46 
TCGA-F7-A623 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 
        0.20         4.34         0.07         0.16         1.02         1.81 
TCGA-HD-8635 TCGA-HD-A633 TCGA-IQ-7630 TCGA-IQ-A61G TCGA-IQ-A61J TCGA-IQ-A61K 
        0.99         1.61        15.95        11.84        14.47         5.29 
TCGA-IQ-A61O TCGA-MT-A51X TCGA-MT-A67D TCGA-P3-A5Q6 TCGA-P3-A5QA 
       11.84         1.12         1.84        15.75        54.31 

$subtype2
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-A6DB 
       23.74        42.31        57.90        23.84        20.48         7.10 
TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 
        5.65         7.82         6.12        95.05         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4722 
       10.19        13.87        20.98        71.05         0.13         6.31 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 
       20.15        21.11        12.99        14.33        26.63        35.67 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.83         8.58        12.39        12.49         8.52        22.45 
TCGA-CN-5374 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        9.01        10.36        14.24         1.48        12.85         3.19 
TCGA-CN-6022 TCGA-CN-A63V TCGA-CN-A63Y TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        6.61        15.88         5.75        39.68        21.50        54.54 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6227 TCGA-CQ-6229 
       45.99        11.21         4.21        28.60         4.21        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 
       48.03        45.27        43.00        29.59        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 
       26.24        50.01        39.52        34.52        36.99        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6492 TCGA-CR-7373 
       10.22        11.34        11.64         7.66        15.75        29.23 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 
       31.96         9.17        34.06        26.17        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5443 TCGA-CV-5971 
       30.54         7.10        35.41        48.36        91.50        23.05 
TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 
       62.43         2.14         4.70        21.86       126.08        19.79 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7183 TCGA-CV-7236 
       53.92        10.98        64.80         7.99       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7406 TCGA-CV-7410 
       47.47        17.10        95.34         4.96        57.47       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7433 TCGA-CV-7438 
       89.33         9.67        56.48       156.49        19.73         6.38 
TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.55        13.25         2.53        16.11         5.03        18.64 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       58.42        33.86        25.48        20.42        12.13        12.10 
TCGA-DQ-7596 TCGA-F7-8489 TCGA-F7-A50J TCGA-F7-A61V TCGA-F7-A620 TCGA-H7-7774 
       11.18         0.43        19.20        12.62         0.43        13.38 
TCGA-H7-8501 TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-A6I0 TCGA-HL-7533 
        1.87         0.82         1.45         0.99         0.92        34.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-KU-A66S TCGA-MT-A67F TCGA-MZ-A6I9 
        4.01        14.50        19.30         7.33         3.65         8.32 
TCGA-P3-A5Q5 TCGA-P3-A5QE TCGA-P3-A5QF 
       29.92        23.70        10.85 

$subtype3
TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DA TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-6010 
       57.44         3.72        11.54        16.04         8.28        14.73 
TCGA-CN-6023 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5329 TCGA-CQ-5330 
       13.94         3.75         1.51        48.16        46.75        29.46 
TCGA-CQ-6220 TCGA-CR-6467 TCGA-CR-7371 TCGA-CR-7380 TCGA-CV-5442 TCGA-CV-5966 
       32.35        58.42         3.06        19.92        76.47        17.06 
TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6952 TCGA-CV-6961 TCGA-CV-7100 TCGA-CV-7409 
       60.49        21.04         6.08         2.50         9.01        17.82 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7434 TCGA-CV-A6JD TCGA-DQ-5625 TCGA-F7-A50G 
       54.90         3.48         7.13         5.98        35.54         0.49 
TCGA-F7-A61S TCGA-IQ-A61H TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A67A TCGA-MT-A67G 
        0.10        13.51        11.54         0.46        12.89         3.65 

subtype1 subtype2 subtype3 
    0.07     0.13     0.10 
subtype1 subtype2 subtype3 
  142.49   210.94    76.47 
subtype1 subtype2 subtype3 
   15.16    18.64    13.20 
[1] "0.1 - 142.5 (15.2)" "0.1 - 210.9 (18.6)" "0.1 - 76.5 (13.2)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[337] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[337] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[319] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[337] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype2"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       9       28        27       100         3
  subtype2      12       25        25        57         0
  subtype3       3        5         7        17         3
D1V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 13 50 41 64
  subtype2 20 38 24 41
  subtype3  4  7 11 13
D1V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 57 19 72  3
  subtype2 55 20 32  0
  subtype3 13  6 13  2
D1V5, multiclass
D1V6, binary
          cls
clus        0  1
  subtype1 37 12
  subtype2 42 13
  subtype3 10  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   12
  subtype2   42   13
  subtype3   10    3
    clus
vv   subtype1 subtype2 subtype3
  M0       37       42       10
  MX       12       13        3
D1V7, binary
          cls
clus         0   1
  subtype1  37 154
  subtype2  56  88
  subtype3  14  24
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37  154
  subtype2   56   88
  subtype3   14   24
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       37       56       14
  MALE        154       88       24
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   190
  subtype2                                   140
  subtype3                                    38
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           1
  subtype2                                                           0
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   4
  subtype3                                                   0
D1V8, multiclass
D1V9, binary
          cls
clus         0   1
  subtype1  37 154
  subtype2  31 113
  subtype3   6  32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37  154
  subtype2   31  113
  subtype3    6   32
     clus
vv    subtype1 subtype2 subtype3
  NO        37       31        6
  YES      154      113       32
D1V10, continuous
D1V11, continuous
D1V12, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 36 17
  subtype2 41 25
  subtype3 40 34
  subtype4 43 10
  subtype5 31 22
  subtype6 36 24
  subtype7  6  8
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      53       66       74       53       53       60       14 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      17       25       34       10       22       24        8 
$subtype1
TCGA-BA-4074 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-A4IF TCGA-BA-A6DE TCGA-BB-7864 
       15.16        17.10        21.17        29.42         5.95        22.59 
TCGA-BB-7870 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 
       37.87         6.38        15.19        22.78        17.79        34.68 
TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-6988 TCGA-CN-A63U TCGA-CN-A63V 
       26.63        16.83        35.54         1.38        17.26        15.88 
TCGA-CN-A641 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-7364 TCGA-CR-7379 
       12.07        13.25        14.96        11.77        47.18        34.06 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5441 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6954 
        5.13        29.92        94.85        90.08        11.24        65.82 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7103 TCGA-CV-7242 TCGA-CV-7245 
        7.13        28.31       111.12        52.31        36.00        26.20 
TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7409 TCGA-CV-7421 TCGA-CV-7428 TCGA-CV-7435 
       95.34        11.87        17.82         0.07        54.90       142.49 
TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-A61V 
       21.99         7.76        23.01        10.65        18.54        12.62 
TCGA-HD-7917 TCGA-HD-8224 TCGA-IQ-7631 TCGA-KU-A66S TCGA-P3-A5QF 
        1.02         1.81         4.01         7.33        10.85 

$subtype2
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4224 TCGA-BB-4227 
        9.30         8.15        12.99         3.72         9.04         4.37 
TCGA-CN-4725 TCGA-CN-4736 TCGA-CN-4742 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6020 
       15.95        12.99        13.05         8.52        22.45         3.19 
TCGA-CN-6998 TCGA-CQ-5329 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 
        1.51        46.75        28.60        32.35        34.75        32.35 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-6477 TCGA-CR-6493 
       45.27        33.07        16.70        29.59        16.90         9.27 
TCGA-CR-7365 TCGA-CR-7372 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5970 TCGA-CV-5973 
       39.12        24.95        19.20        17.95        13.35        86.83 
TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6950 TCGA-CV-6959 TCGA-CV-7090 
       48.59        43.23        40.96        15.06         8.38       126.12 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 
        1.84        12.89        71.21        10.75       114.94        31.33 
TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7438 TCGA-CV-A6JE 
       18.97         2.10        25.02       100.54         6.38        24.66 
TCGA-D6-6517 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7592 
        9.60         4.18        58.42        35.54        14.04         9.83 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-H7-8502 TCGA-HD-7753 TCGA-IQ-7630 
        0.49        19.20         0.10         4.34         0.16        15.95 
TCGA-IQ-A61J TCGA-IQ-A61K TCGA-IQ-A61L TCGA-IQ-A61O TCGA-MT-A51X TCGA-P3-A5QA 
       14.47         5.29        11.54        11.84         1.12        54.31 

$subtype3
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 TCGA-BA-A6D8 
       13.64         9.07         6.21        14.79         7.76        16.83 
TCGA-BA-A6DA TCGA-BB-7862 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4735 
       11.54        17.59        14.04        20.52        23.70        21.11 
TCGA-CN-5361 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6019 TCGA-CN-6021 
        6.35        14.73        13.94        12.20        12.85         9.07 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 
       13.94         7.36         5.82         2.73         3.91         3.29 
TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7383 
       10.42        32.88         3.42         3.06         0.99        17.13 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       12.89        29.82       139.40       129.21       108.33        47.28 
TCGA-CV-5440 TCGA-CV-5978 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 
      107.51         7.07         9.70        20.52        26.43        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 
       42.35        30.05         4.14         5.23        21.76        56.68 
TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7415 
       17.10        47.97        36.13        35.54         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7437 
       25.94        34.09        14.86         3.48        16.27        16.60 
TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5629 
       10.39        27.22        25.41        18.64         3.42        16.96 
TCGA-DQ-7589 TCGA-F7-A50I TCGA-F7-A61W TCGA-F7-A623 TCGA-HD-8635 TCGA-IQ-A61G 
       18.90         3.02         0.46         0.20         0.99        11.84 
TCGA-IQ-A61H TCGA-P3-A5Q6 
       13.51        15.75 

$subtype4
TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 
       37.28        57.90        57.44         2.07        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7866 TCGA-CN-4741 TCGA-CN-5374 TCGA-CN-6013 
       18.31        10.19        20.98        35.67         9.01        14.24 
TCGA-CN-A49B TCGA-CN-A63Y TCGA-CQ-5323 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       14.70         5.75        48.16        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7368 TCGA-CR-7369 
       11.90        10.22        11.34         7.66        40.90        35.84 
TCGA-CR-7385 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5443 
       32.78         5.92        48.36        17.16        76.47        91.50 
TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6939 TCGA-CV-7100 TCGA-CV-7406 TCGA-DQ-7590 
       21.04         9.57        21.86         9.01        57.47        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7596 TCGA-HD-7754 TCGA-HD-8314 
       20.42        12.13        12.10        11.18         0.82         1.45 
TCGA-HL-7533 TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE 
       34.75         3.65         8.32        29.92        23.70 

$subtype5
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-A6DF TCGA-BB-7863 
       23.74        42.31        23.84        53.75         7.82        13.87 
TCGA-C9-A47Z TCGA-CN-4722 TCGA-CN-4734 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-6995 
        0.16         6.31         7.43         8.28        11.54         3.68 
TCGA-CQ-5324 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-7063 
       39.68        54.54        29.46        11.21         4.21        48.03 
TCGA-CQ-7068 TCGA-CR-6484 TCGA-CR-7373 TCGA-CR-7380 TCGA-CR-7386 TCGA-CR-7395 
       43.00        11.64        29.23        19.92        47.01        30.54 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6942 
       80.12        17.06        60.49        62.43         4.70       126.08 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7252 
        6.08        53.92        10.98        12.66         7.99         4.96 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7434 TCGA-CV-A6JD 
       89.33         9.67        56.48       156.49         7.13         5.98 
TCGA-D6-6825 TCGA-D6-6826 TCGA-F7-8298 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       16.11         5.03        16.11        13.38         1.87         0.07 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-A61E TCGA-MT-A67A TCGA-MT-A67F 
        1.61         0.92        19.30        12.89         3.65 

$subtype6
TCGA-BA-5557 TCGA-BA-A6DB TCGA-BA-A6DD TCGA-BB-4217 TCGA-BB-7872 TCGA-BB-8596 
       20.48         7.10         5.65         6.12        14.33        71.05 
TCGA-C9-A480 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4738 TCGA-CN-5358 TCGA-CN-5359 
        0.13        20.15        21.11        14.33         8.58        12.39 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       11.84        11.57        12.49        10.36        14.24         1.48 
TCGA-CN-6022 TCGA-CN-6996 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-6219 
        6.61         3.75        21.50         2.93        45.99        15.72 
TCGA-CQ-6222 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6488 
       38.14         4.21        26.76        18.51         6.02        12.46 
TCGA-CR-6492 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7382 TCGA-CR-7388 TCGA-CR-7391 
       15.75        31.96         9.17        26.17        27.02        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5971 
       31.10        29.85        29.52         7.10        35.41        23.05 
TCGA-CV-6943 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7410 
       19.79         2.50        64.80         4.73        47.47       210.94 
TCGA-CV-7433 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-8568 
       19.73        30.48        10.55        13.25         2.53         3.45 
TCGA-DQ-5630 TCGA-F7-8489 TCGA-F7-A620 TCGA-HD-8634 TCGA-IQ-7632 TCGA-MT-A51W 
       33.86         0.43         0.43         0.99        14.50         0.46 

$subtype7
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-5355 TCGA-CN-5364 TCGA-CR-6491 TCGA-CR-7367 
        4.67         5.13        16.04        16.21        11.51        47.34 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-7095 TCGA-CV-7263 TCGA-CV-7432 TCGA-D6-A4Z9 
        2.14         5.46        18.81        18.41        84.49         3.68 
TCGA-DQ-5631 TCGA-MT-A67D 
       18.02         1.84 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.07     0.10     0.20     0.82     0.07     0.13     1.84 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  142.49   126.12   139.40    95.05   156.49   210.94    84.49 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  17.790   15.505   14.385   21.860   13.380   14.285   13.775 
[1] "0.1 - 142.5 (17.8)" "0.1 - 126.1 (15.5)" "0.2 - 139.4 (14.4)"
[4] "0.8 - 95.0 (21.9)"  "0.1 - 156.5 (13.4)" "0.1 - 210.9 (14.3)"
[7] "1.8 - 84.5 (13.8)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
  [7] "subtype5" "subtype5" "subtype4" "subtype1" "subtype5" "subtype6"
 [13] "subtype5" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype6" "subtype6" "subtype1" "subtype5" "subtype6" "subtype4"
 [31] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [37] "subtype5" "subtype1" "subtype4" "subtype1" "subtype3" "subtype6"
 [43] "subtype6" "subtype3" "subtype5" "subtype6" "subtype5" "subtype3"
 [49] "subtype2" "subtype7" "subtype1" "subtype6" "subtype7" "subtype1"
 [55] "subtype1" "subtype6" "subtype5" "subtype3" "subtype2" "subtype1"
 [61] "subtype6" "subtype1" "subtype1" "subtype4" "subtype2" "subtype7"
 [67] "subtype1" "subtype6" "subtype6" "subtype1" "subtype3" "subtype5"
 [73] "subtype7" "subtype5" "subtype6" "subtype6" "subtype6" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
 [85] "subtype6" "subtype6" "subtype6" "subtype3" "subtype2" "subtype3"
 [91] "subtype6" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype5" "subtype6" "subtype3" "subtype2" "subtype4"
[103] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype5"
[109] "subtype6" "subtype6" "subtype5" "subtype2" "subtype5" "subtype6"
[115] "subtype3" "subtype5" "subtype5" "subtype2" "subtype6" "subtype2"
[121] "subtype3" "subtype6" "subtype2" "subtype2" "subtype1" "subtype6"
[127] "subtype1" "subtype6" "subtype5" "subtype2" "subtype2" "subtype2"
[133] "subtype5" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[139] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[145] "subtype6" "subtype2" "subtype6" "subtype4" "subtype4" "subtype4"
[151] "subtype5" "subtype4" "subtype6" "subtype7" "subtype6" "subtype2"
[157] "subtype1" "subtype2" "subtype7" "subtype4" "subtype4" "subtype3"
[163] "subtype3" "subtype2" "subtype5" "subtype3" "subtype6" "subtype6"
[169] "subtype1" "subtype5" "subtype6" "subtype3" "subtype4" "subtype5"
[175] "subtype6" "subtype3" "subtype3" "subtype6" "subtype6" "subtype6"
[181] "subtype6" "subtype5" "subtype6" "subtype1" "subtype4" "subtype6"
[187] "subtype1" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[199] "subtype4" "subtype5" "subtype5" "subtype2" "subtype6" "subtype2"
[205] "subtype2" "subtype5" "subtype3" "subtype2" "subtype2" "subtype4"
[211] "subtype5" "subtype4" "subtype1" "subtype7" "subtype3" "subtype7"
[217] "subtype3" "subtype5" "subtype4" "subtype3" "subtype1" "subtype5"
[223] "subtype6" "subtype3" "subtype3" "subtype2" "subtype3" "subtype5"
[229] "subtype5" "subtype1" "subtype5" "subtype1" "subtype2" "subtype1"
[235] "subtype6" "subtype3" "subtype6" "subtype2" "subtype1" "subtype7"
[241] "subtype5" "subtype5" "subtype4" "subtype3" "subtype2" "subtype1"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype6" "subtype6" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype1" "subtype5" "subtype1" "subtype3" "subtype2"
[265] "subtype3" "subtype7" "subtype4" "subtype3" "subtype1" "subtype6"
[271] "subtype5" "subtype5" "subtype3" "subtype3" "subtype2" "subtype3"
[277] "subtype1" "subtype3" "subtype2" "subtype3" "subtype5" "subtype5"
[283] "subtype1" "subtype3" "subtype3" "subtype7" "subtype6" "subtype5"
[289] "subtype1" "subtype3" "subtype2" "subtype1" "subtype6" "subtype5"
[295] "subtype2" "subtype3" "subtype6" "subtype1" "subtype3" "subtype6"
[301] "subtype3" "subtype2" "subtype1" "subtype6" "subtype5" "subtype5"
[307] "subtype3" "subtype6" "subtype2" "subtype7" "subtype3" "subtype2"
[313] "subtype2" "subtype3" "subtype6" "subtype7" "subtype2" "subtype3"
[319] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[325] "subtype4" "subtype1" "subtype5" "subtype6" "subtype2" "subtype3"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype6" "subtype3"
[337] "subtype5" "subtype5" "subtype2" "subtype5" "subtype2" "subtype4"
[343] "subtype1" "subtype1" "subtype4" "subtype6" "subtype3" "subtype5"
[349] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype5"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype1" "subtype6" "subtype2" "subtype5" "subtype7" "subtype5"
[367] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[373] "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
  [7] "subtype5" "subtype5" "subtype4" "subtype1" "subtype5" "subtype6"
 [13] "subtype5" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype6" "subtype6" "subtype1" "subtype5" "subtype6" "subtype4"
 [31] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [37] "subtype5" "subtype1" "subtype4" "subtype1" "subtype3" "subtype6"
 [43] "subtype6" "subtype3" "subtype5" "subtype6" "subtype5" "subtype3"
 [49] "subtype2" "subtype7" "subtype1" "subtype6" "subtype7" "subtype1"
 [55] "subtype1" "subtype6" "subtype5" "subtype3" "subtype2" "subtype1"
 [61] "subtype6" "subtype1" "subtype1" "subtype4" "subtype2" "subtype7"
 [67] "subtype1" "subtype6" "subtype6" "subtype1" "subtype3" "subtype5"
 [73] "subtype7" "subtype5" "subtype6" "subtype6" "subtype6" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
 [85] "subtype6" "subtype6" "subtype6" "subtype3" "subtype2" "subtype3"
 [91] "subtype6" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype5" "subtype6" "subtype3" "subtype2" "subtype4"
[103] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype5"
[109] "subtype6" "subtype6" "subtype5" "subtype2" "subtype5" "subtype6"
[115] "subtype3" "subtype5" "subtype5" "subtype2" "subtype6" "subtype2"
[121] "subtype3" "subtype6" "subtype2" "subtype2" "subtype1" "subtype6"
[127] "subtype1" "subtype6" "subtype5" "subtype2" "subtype2" "subtype2"
[133] "subtype5" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[139] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[145] "subtype6" "subtype2" "subtype6" "subtype4" "subtype4" "subtype4"
[151] "subtype5" "subtype4" "subtype6" "subtype7" "subtype6" "subtype2"
[157] "subtype1" "subtype2" "subtype7" "subtype4" "subtype4" "subtype3"
[163] "subtype3" "subtype2" "subtype5" "subtype3" "subtype6" "subtype6"
[169] "subtype1" "subtype5" "subtype6" "subtype3" "subtype4" "subtype5"
[175] "subtype6" "subtype3" "subtype3" "subtype6" "subtype6" "subtype6"
[181] "subtype6" "subtype5" "subtype6" "subtype1" "subtype4" "subtype6"
[187] "subtype1" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[199] "subtype4" "subtype5" "subtype5" "subtype2" "subtype6" "subtype2"
[205] "subtype2" "subtype5" "subtype3" "subtype2" "subtype2" "subtype4"
[211] "subtype5" "subtype4" "subtype1" "subtype7" "subtype3" "subtype7"
[217] "subtype3" "subtype5" "subtype4" "subtype3" "subtype1" "subtype5"
[223] "subtype6" "subtype3" "subtype3" "subtype2" "subtype3" "subtype5"
[229] "subtype5" "subtype1" "subtype5" "subtype1" "subtype2" "subtype1"
[235] "subtype6" "subtype3" "subtype6" "subtype2" "subtype1" "subtype7"
[241] "subtype5" "subtype5" "subtype4" "subtype3" "subtype2" "subtype1"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype6" "subtype6" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype1" "subtype5" "subtype1" "subtype3" "subtype2"
[265] "subtype3" "subtype7" "subtype4" "subtype3" "subtype1" "subtype6"
[271] "subtype5" "subtype5" "subtype3" "subtype3" "subtype2" "subtype3"
[277] "subtype1" "subtype3" "subtype2" "subtype3" "subtype5" "subtype5"
[283] "subtype1" "subtype3" "subtype3" "subtype7" "subtype6" "subtype5"
[289] "subtype1" "subtype3" "subtype2" "subtype1" "subtype6" "subtype5"
[295] "subtype2" "subtype3" "subtype6" "subtype1" "subtype3" "subtype6"
[301] "subtype3" "subtype2" "subtype1" "subtype6" "subtype5" "subtype5"
[307] "subtype3" "subtype6" "subtype2" "subtype7" "subtype3" "subtype2"
[313] "subtype2" "subtype3" "subtype6" "subtype7" "subtype2" "subtype3"
[319] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[325] "subtype4" "subtype1" "subtype5" "subtype6" "subtype2" "subtype3"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype6" "subtype3"
[337] "subtype5" "subtype5" "subtype2" "subtype5" "subtype2" "subtype4"
[343] "subtype1" "subtype1" "subtype4" "subtype6" "subtype3" "subtype5"
[349] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype5"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype1" "subtype6" "subtype2" "subtype5" "subtype7" "subtype5"
[367] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[373] "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
  [7] "subtype5" "subtype5" "subtype4" "subtype1" "subtype5" "subtype6"
 [13] "subtype5" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype6" "subtype6" "subtype1" "subtype5" "subtype6" "subtype4"
 [31] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
 [37] "subtype5" "subtype1" "subtype4" "subtype1" "subtype3" "subtype6"
 [43] "subtype6" "subtype3" "subtype5" "subtype6" "subtype5" "subtype3"
 [49] "subtype2" "subtype7" "subtype1" "subtype6" "subtype7" "subtype1"
 [55] "subtype1" "subtype6" "subtype5" "subtype3" "subtype2" "subtype1"
 [61] "subtype6" "subtype1" "subtype1" "subtype4" "subtype2" "subtype7"
 [67] "subtype1" "subtype6" "subtype6" "subtype1" "subtype3" "subtype5"
 [73] "subtype7" "subtype5" "subtype6" "subtype6" "subtype6" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
 [85] "subtype6" "subtype6" "subtype6" "subtype3" "subtype2" "subtype3"
 [91] "subtype6" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype5" "subtype6" "subtype3" "subtype2" "subtype4"
[103] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype5"
[109] "subtype6" "subtype6" "subtype5" "subtype2" "subtype5" "subtype6"
[115] "subtype3" "subtype5" "subtype5" "subtype2" "subtype6" "subtype2"
[121] "subtype3" "subtype6" "subtype2" "subtype2" "subtype1" "subtype6"
[127] "subtype1" "subtype6" "subtype5" "subtype2" "subtype2" "subtype2"
[133] "subtype5" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[139] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[145] "subtype6" "subtype2" "subtype6" "subtype4" "subtype4" "subtype4"
[151] "subtype5" "subtype4" "subtype6" "subtype7" "subtype6" "subtype2"
[157] "subtype1" "subtype2" "subtype7" "subtype4" "subtype4" "subtype3"
[163] "subtype3" "subtype2" "subtype5" "subtype3" "subtype6" "subtype6"
[169] "subtype1" "subtype5" "subtype6" "subtype3" "subtype4" "subtype5"
[175] "subtype6" "subtype3" "subtype3" "subtype6" "subtype6" "subtype6"
[181] "subtype6" "subtype5" "subtype6" "subtype1" "subtype4" "subtype6"
[187] "subtype1" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[199] "subtype4" "subtype5" "subtype5" "subtype2" "subtype6" "subtype2"
[205] "subtype2" "subtype5" "subtype3" "subtype2" "subtype2" "subtype4"
[211] "subtype5" "subtype4" "subtype1" "subtype7" "subtype3" "subtype7"
[217] "subtype3" "subtype5" "subtype4" "subtype3" "subtype1" "subtype5"
[223] "subtype6" "subtype3" "subtype3" "subtype2" "subtype3" "subtype5"
[229] "subtype5" "subtype1" "subtype5" "subtype1" "subtype2" "subtype1"
[235] "subtype6" "subtype3" "subtype6" "subtype2" "subtype1" "subtype7"
[241] "subtype5" "subtype5" "subtype4" "subtype3" "subtype2" "subtype1"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype6" "subtype6" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype1" "subtype5" "subtype1" "subtype3" "subtype2"
[265] "subtype3" "subtype7" "subtype4" "subtype3" "subtype1" "subtype6"
[271] "subtype5" "subtype5" "subtype3" "subtype3" "subtype2" "subtype3"
[277] "subtype1" "subtype3" "subtype2" "subtype3" "subtype5" "subtype5"
[283] "subtype1" "subtype3" "subtype3" "subtype7" "subtype6" "subtype5"
[289] "subtype1" "subtype3" "subtype2" "subtype1" "subtype6" "subtype5"
[295] "subtype2" "subtype3" "subtype6" "subtype1" "subtype3" "subtype6"
[301] "subtype3" "subtype2" "subtype1" "subtype6" "subtype5" "subtype5"
[307] "subtype3" "subtype6" "subtype2" "subtype7" "subtype3" "subtype2"
[313] "subtype2" "subtype3" "subtype6" "subtype7" "subtype2" "subtype3"
[319] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[325] "subtype4" "subtype1" "subtype5" "subtype6" "subtype2" "subtype3"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype6" "subtype3"
[337] "subtype5" "subtype5" "subtype2" "subtype5" "subtype2" "subtype4"
[343] "subtype1" "subtype1" "subtype4" "subtype6" "subtype3" "subtype5"
[349] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype5"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype1" "subtype6" "subtype2" "subtype5" "subtype7" "subtype5"
[367] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[373] "subtype1"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       1        8        10        29         1
  subtype2       6       12        15        26         0
  subtype3       3        8         8        42         2
  subtype4       2        5         9        15         0
  subtype5       4       14         6        27         3
  subtype6       8        8         9        32         0
  subtype7       0        4         2         7         0
D2V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  3 12 13 21
  subtype2  8 21 21 10
  subtype3  5 13 14 32
  subtype4  6 13  6  8
  subtype5  4 16 10 24
  subtype6 11 16 11 20
  subtype7  0  6  2  5
D2V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 24  6 16  1
  subtype2 22  7 23  0
  subtype3 17  6 32  2
  subtype4 11  8 11  0
  subtype5 27  7  9  2
  subtype6 22  9 23  0
  subtype7  3  2  6  0
D2V5, multiclass
D2V6, binary
          cls
clus        0  1
  subtype1  9  6
  subtype2 17  3
  subtype3 12  5
  subtype4 12  5
  subtype5 11  7
  subtype6 25  2
  subtype7  4  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    6
  subtype2   17    3
  subtype3   12    5
  subtype4   12    5
  subtype5   11    7
  subtype6   25    2
  subtype7    4    0
D2V7, binary
          cls
clus        0  1
  subtype1 10 43
  subtype2 22 45
  subtype3 17 57
  subtype4  6 47
  subtype5 29 27
  subtype6 23 38
  subtype7  2 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   43
  subtype2   22   45
  subtype3   17   57
  subtype4    6   47
  subtype5   29   27
  subtype6   23   38
  subtype7    2   12
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    52
  subtype2                                    66
  subtype3                                    74
  subtype4                                    50
  subtype5                                    56
  subtype6                                    61
  subtype7                                    14
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
  subtype4                                                           0
  subtype5                                                           0
  subtype6                                                           0
  subtype7                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   1
  subtype2                                                   0
  subtype3                                                   0
  subtype4                                                   3
  subtype5                                                   0
  subtype6                                                   0
  subtype7                                                   0
D2V8, multiclass
D2V9, binary
          cls
clus        0  1
  subtype1 10 43
  subtype2 12 55
  subtype3 16 58
  subtype4 13 40
  subtype5  7 49
  subtype6 15 46
  subtype7  3 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   43
  subtype2   12   55
  subtype3   16   58
  subtype4   13   40
  subtype5    7   49
  subtype6   15   46
  subtype7    3   11
D2V10, continuous
D2V11, continuous
D2V12, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 22 33
  subtype2 29 23
  subtype3 16 21
  subtype4 30 38
subtype1 subtype2 subtype3 subtype4 
      55       52       37       68 
subtype1 subtype2 subtype3 subtype4 
      33       23       21       38 
$subtype1
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.16         8.15        23.74        23.84        20.48        14.79 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       23.70        15.95         4.67         6.38        20.15         5.13 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-5363 
       21.11        21.11        14.33        34.68        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-6018 TCGA-CN-6020 TCGA-CQ-5326 
       16.21        11.84        12.49         1.48         3.19         2.93 
TCGA-CQ-5329 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5443 
       46.75        15.72        38.14        17.16        17.95        91.50 
TCGA-CV-5971 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6959 
       23.05       126.08        12.03        15.06        10.98         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 
       28.31         2.50         4.14        64.80       126.12         7.99 
TCGA-CV-7100 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7406 
        9.01        18.97         4.96        11.87        47.97        57.47 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-DQ-7592 
        6.38        21.99        27.22        13.25        23.01         9.83 
TCGA-IQ-7630 
       15.95 

$subtype2
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
        9.07        42.31        57.90        17.10        57.44        21.17 
TCGA-BA-6871 TCGA-BB-4217 TCGA-CN-4730 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 
        2.07         6.12        15.19        35.67        16.04        16.83 
TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 
        6.35         9.01        14.73        14.24        13.94         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5324 
        1.38         5.82         2.73         3.68         3.29        39.68 
TCGA-CQ-5332 TCGA-CQ-6228 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       10.42        14.96       139.40       129.21       108.33       107.51 
TCGA-CV-5441 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6939 
       94.85        21.04         9.57        90.08         9.70        21.86 
TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7242 TCGA-CV-7248 
       42.35        65.82       111.12        12.66        36.00        17.10 
TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7429 
       36.13        22.85        25.94        34.09        14.86         3.48 
TCGA-CV-7433 TCGA-CV-7437 TCGA-D6-6827 TCGA-DQ-7591 
       19.73        16.60        18.64        20.42 

$subtype3
TCGA-BA-6872 TCGA-BA-6873 TCGA-CN-4722 TCGA-CN-5365 TCGA-CN-6011 TCGA-CN-6021 
       12.99         3.72         6.31        11.54        13.94         9.07 
TCGA-CQ-5323 TCGA-CQ-5331 TCGA-CQ-6220 TCGA-CQ-7068 TCGA-CV-5442 TCGA-CV-5966 
       48.16        45.99        32.35        43.00        76.47        17.06 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 
       60.49        43.23        40.96        62.43         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-7177 TCGA-CV-7178 
       26.43        11.24         6.08        53.92        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7413 TCGA-CV-7427 TCGA-CV-7428 
       10.75        26.20        95.34         9.67       156.49        54.90 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6825 
       16.27        84.49         7.13         7.76        25.41        16.11 
TCGA-IQ-7632 
       14.50 

$subtype4
TCGA-CN-4731 TCGA-CN-4734 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 
       22.78         7.43        12.99        17.79        26.63        13.05 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6012 
        8.58        35.54        11.57         8.52        22.45        12.20 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6994 TCGA-CN-6996 
       10.36        14.24        12.85         6.61         3.91         3.75 
TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6218 
        1.51        21.50        54.54        29.46         4.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 
       32.88        32.35        13.25         4.21        26.76        33.07 
TCGA-CV-5436 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       19.20        80.12        13.35        86.83        48.59         7.07 
TCGA-CV-6934 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-7095 
        2.14         4.70        19.79        30.05         7.13        18.81 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7183 TCGA-CV-7235 
        5.23         1.84        52.31        12.89       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 
        4.73        47.47        31.33         2.10        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 
      210.94        89.33         0.46        25.02         0.07       100.54 
TCGA-CV-7425 TCGA-CV-7435 TCGA-CV-7446 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6517 
       56.48       142.49        35.93        30.48        10.55         9.60 
TCGA-D6-6824 TCGA-D6-6826 
        2.53         5.03 

subtype1 subtype2 subtype3 subtype4 
    1.48     1.38     3.72     0.07 
subtype1 subtype2 subtype3 subtype4 
  126.12   139.40   156.49   210.94 
subtype1 subtype2 subtype3 subtype4 
   15.72    17.10    21.76    18.10 
[1] "1.5 - 126.1 (15.7)" "1.4 - 139.4 (17.1)" "3.7 - 156.5 (21.8)"
[4] "0.1 - 210.9 (18.1)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [79] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
 [85] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [79] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
 [85] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [79] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
 [85] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[205] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       1       14         9        28         1
  subtype2       2        4         7        33         1
  subtype3       3        8         6        16         1
  subtype4       3       13         9        40         1
D3V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  3 19 12 19
  subtype2  3  6 14 25
  subtype3  3 13  6 13
  subtype4  4 21 21 22
D3V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 20  5 19  1
  subtype2 15  3 25  1
  subtype3 17  5  8  1
  subtype4 20  8 27  1
D3V5, multiclass
D3V6, binary
          cls
clus       0
  subtype1 9
  subtype2 6
  subtype3 1
  subtype4 6
[1] "NOT AVAILABLE: table only has an event [0]"
D3V7, binary
          cls
clus        0  1
  subtype1 13 42
  subtype2  7 45
  subtype3 15 22
  subtype4 27 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   42
  subtype2    7   45
  subtype3   15   22
  subtype4   27   41
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13        7       15       27
  MALE         42       45       22       41
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    55
  subtype2                                    52
  subtype3                                    37
  subtype4                                    68
[1] "NOT AVAILABLE: table dimension [4x1]"
D3V9, binary
          cls
clus        0  1
  subtype1 20 35
  subtype2 18 34
  subtype3  4 33
  subtype4 14 54
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   35
  subtype2   18   34
  subtype3    4   33
  subtype4   14   54
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        20       18        4       14
  YES       35       34       33       54
D3V10, continuous
D3V11, continuous
D3V12, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 12  5
  subtype2 33 40
  subtype3 52 70
subtype1 subtype2 subtype3 
      17       73      122 
subtype1 subtype2 subtype3 
       5       40       70 
$subtype1
TCGA-BA-5152 TCGA-BA-5559 TCGA-BA-6871 TCGA-CN-5361 TCGA-CN-5366 TCGA-CN-5374 
       42.31        57.44         2.07         6.35        11.84         9.01 
TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6989 TCGA-CQ-5324 TCGA-CV-5430 
       14.24         9.07        13.94         5.82        39.68       139.40 
TCGA-CV-6433 TCGA-CV-6939 TCGA-CV-7418 TCGA-DQ-7591 TCGA-IQ-7630 
       21.04        21.86        25.94        20.42        15.95 

$subtype2
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.16         8.15        23.74        23.84        20.48        14.79 
TCGA-BA-6873 TCGA-BB-4217 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4733 
        3.72         6.12        23.70         6.38         5.13        21.11 
TCGA-CN-4735 TCGA-CN-4739 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
       21.11        34.68        16.04        12.39         8.28        16.21 
TCGA-CN-5369 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6020 TCGA-CQ-5326 TCGA-CQ-5329 
       12.49        13.94         1.48         3.19         2.93        46.75 
TCGA-CQ-5331 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-7068 TCGA-CV-5431 TCGA-CV-5432 
       45.99        15.72        32.35        43.00        17.16       129.21 
TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5979 
       17.95        91.50        17.06        23.05        60.49        43.23 
TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 
       40.96        62.43         5.46        26.43       126.08        12.03 
TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       15.06        10.98         8.38         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
      126.12         7.99         9.01        71.21        10.75       114.94 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10         4.96        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7422 TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7438 
       57.47        34.09       156.49        16.27        84.49         6.38 
TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 
       21.99        27.22        13.25        25.41        23.01        16.11 
TCGA-DQ-7592 
        9.83 

$subtype3
TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6872 TCGA-CN-4722 
        9.07        57.90        17.10        21.17        12.99         6.31 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4734 
       15.95         4.67        20.15        15.19        22.78         7.43 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        17.79        14.33        26.63        35.67        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5370 
       16.83         8.58        35.54        11.54        11.57         8.52 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 
       22.45        14.73        12.20        10.36        14.24        12.85 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.61         7.36         1.38         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5327 
        3.75         3.29         1.51        48.16        21.50        54.54 
TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6222 
       29.46        10.42         4.21        28.60        32.88        38.14 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 
      108.33        19.20       107.51        94.85        76.47        80.12 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 
       13.35        86.83        48.59         7.07         9.57        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 
        2.14         9.70        20.52         4.70        11.24        19.79 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6956 
       42.35        30.05         6.08        53.92        65.82         7.13 
TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 
       28.31       111.12        18.81        12.66         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       52.31        12.89        21.76        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7263 
       36.00        31.33        26.20        95.34         2.10        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 
       25.02         0.07       100.54        14.86        56.48        54.90 
TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 
        3.48        19.73         7.13       142.49        16.60        35.93 
TCGA-CV-7568 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 
       30.48        10.55         7.76         9.60         2.53         5.03 
TCGA-D6-6827 TCGA-IQ-7632 
       18.64        14.50 

subtype1 subtype2 subtype3 
    2.07     1.48     0.07 
subtype1 subtype2 subtype3 
  139.40   156.49   210.94 
subtype1 subtype2 subtype3 
  15.950   17.160   16.715 
[1] "2.1 - 139.4 (15.9)" "1.5 - 156.5 (17.2)" "0.1 - 210.9 (16.7)"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype3"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       0        2         1        10         0
  subtype2       3       17        12        37         1
  subtype3       6       20        18        70         3
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  0  3  3  7
  subtype2  5 25 12 29
  subtype3  8 31 38 43
D4V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1  4  0  9  0
  subtype2 28  9 22  1
  subtype3 40 12 48  3
D4V5, multiclass
D4V6, binary
          cls
clus        0
  subtype1  6
  subtype2  6
  subtype3 10
[1] "NOT AVAILABLE: table only has an event [0]"
D4V7, binary
          cls
clus        0  1
  subtype1  2 15
  subtype2 22 51
  subtype3 38 84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   15
  subtype2   22   51
  subtype3   38   84
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2       22       38
  MALE         15       51       84
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    17
  subtype2                                    73
  subtype3                                   122
[1] "NOT AVAILABLE: table dimension [3x1]"
D4V9, binary
          cls
clus        0  1
  subtype1  8  9
  subtype2 19 54
  subtype3 29 93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    9
  subtype2   19   54
  subtype3   29   93
     clus
vv    subtype1 subtype2 subtype3
  NO         8       19       29
  YES        9       54       93
D4V10, continuous
D4V11, continuous
D4V12, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 88 50
  subtype2 62 48
  subtype3 69 39
subtype1 subtype2 subtype3 
     138      110      108 
subtype1 subtype2 subtype3 
      50       48       39 
$subtype1
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6868 
       15.16        37.28         9.07        57.90        17.10         6.21 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BB-4217 
       21.17         2.07         7.76        29.42        16.83         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
       95.05         4.60        18.31        10.19        17.59        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4727 
       20.98        37.87        14.04        20.52        23.70         6.38 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 
       22.78        21.11        14.33        34.68        35.67        16.83 
TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 
       35.54         6.35         9.01        14.73        12.20         9.07 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A49B 
       13.94         1.38         2.73         3.91         3.29        14.70 
TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5243 
       48.16        10.42        32.88        13.25        14.96        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       34.52        36.99         6.02        10.22        11.34         7.66 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 
       47.18        40.90        35.84         3.42         3.06         0.99 
TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7393 TCGA-CR-7398 TCGA-CR-7399 
       32.78        27.02        12.89        29.85         5.13         5.92 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5443 
       29.92        48.36       139.40        17.16       129.21        91.50 
TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        7.07        21.04        90.08         9.70         5.46        20.52 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-6962 
       21.86        11.24       126.08        42.35        28.31         4.14 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7242 
        9.01         5.23        21.76        56.68         4.73        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 
       35.54        17.82       210.94         0.46        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7437 TCGA-CV-7440 TCGA-CV-A6JD 
       34.09        14.86        16.27        16.60        21.99         5.98 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 
        2.53         5.03        18.64        16.96        18.90        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
       20.42        12.13        12.10        10.65        11.18        18.54 
TCGA-F7-8489 TCGA-F7-A50I TCGA-HD-7754 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 
        0.43         3.02         0.82         1.45        34.75         4.01 
TCGA-KU-A66S TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        7.33         8.32        29.92        15.75        23.70        10.85 

$subtype2
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A6DB TCGA-BB-7872 
        9.30         8.15        57.44         3.72         7.10        14.33 
TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
       71.05        15.95        20.15        21.11        12.99        17.79 
TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 
       26.63        13.05        16.04         8.58         8.28        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       11.84        11.57         8.52        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 
        1.48        12.85         6.61         7.36         5.82         3.68 
TCGA-CN-6996 TCGA-CQ-5325 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 
        3.75        21.50        46.75        29.46        11.21        15.72 
TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CR-6474 
       38.14        32.35         4.21        26.76        16.70        18.51 
TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 
       16.90        12.46        39.12        24.95        31.96         9.17 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7397 
       26.17        17.13        47.01        30.02        31.10         7.10 
TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 
       35.41       108.33        47.28        19.20       107.51        80.12 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 
       17.06        13.35        23.05        48.59        43.23         9.57 
TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6959 
        2.14        26.43        15.06        30.05         7.13         8.38 
TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        2.50        18.81        12.66         1.84        52.31        12.89 
TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 
       71.21        47.47        31.33        18.97        18.41        57.47 
TCGA-CV-7415 TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 
       22.85         3.48       142.49         6.38        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
       13.25        16.11         3.45         4.18         3.68        58.42 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-A61V 
       35.54        33.86        18.02         9.83        16.11        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-A61E 
        0.46         0.43         0.16         1.81         0.99        19.30 
TCGA-IQ-A61O TCGA-P3-A5QA 
       11.84        54.31 

$subtype3
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       13.64        23.74        42.31        23.84        20.48        53.75 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BB-4224 
       14.79        12.99        11.54         5.65         5.95         9.04 
TCGA-BB-7863 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4722 TCGA-CN-4726 TCGA-CN-4729 
       13.87         0.16         0.13         6.31         4.67         5.13 
TCGA-CN-4730 TCGA-CN-4734 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5373 
       15.19         7.43        12.39        11.54        12.49        22.45 
TCGA-CN-6011 TCGA-CN-6020 TCGA-CN-6998 TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5326 
       13.94         3.19         1.51        12.07        39.68         2.93 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 
       54.54        45.99         4.21        28.60        32.35        34.75 
TCGA-CQ-7063 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-6471 TCGA-CR-6484 
       48.03        33.07        43.00        29.59        39.52        11.64 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7379 
       11.51        15.75         9.27        47.34        29.23        34.06 
TCGA-CR-7380 TCGA-CR-7390 TCGA-CR-7394 TCGA-CR-7395 TCGA-CV-5439 TCGA-CV-5441 
       19.92        29.82        29.52        30.54        17.95        94.85 
TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6938 
       76.47        86.83        60.49        40.96        62.43         4.70 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       19.79        12.03         6.08        53.92        65.82        10.98 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7183 
       64.80       126.12       111.12         7.99        10.75       114.94 
TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7423 
        4.96         2.10        89.33         9.67        25.02       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       56.48       156.49        54.90        84.49        19.73         7.13 
TCGA-CV-A6JE TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
       24.66         7.76        27.22        25.41         9.60        23.01 
TCGA-D6-A4ZB TCGA-DQ-7588 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A623 
        3.42        14.04         0.49        19.20         0.10         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8634 
       13.38         1.87         4.34         0.07         1.02         0.99 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        1.61         0.92        15.95        14.50         0.46         1.12 

subtype1 subtype2 subtype3 
    0.07     0.16     0.07 
subtype1 subtype2 subtype3 
  210.94   142.49   156.49 
subtype1 subtype2 subtype3 
  17.030   15.995   14.990 
[1] "0.1 - 210.9 (17.0)" "0.2 - 142.5 (16.0)" "0.1 - 156.5 (15.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[217] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[259] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[265] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[283] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[343] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[349] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[355] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[217] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[259] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[265] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[283] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[343] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[349] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[355] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[175] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[217] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[259] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[265] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[283] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[343] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[349] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[355] "subtype1" "subtype1"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       3       16        23        57         3
  subtype2      14       16        14        58         1
  subtype3       6       22        21        53         2
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  9 29 26 41
  subtype2 17 32 24 31
  subtype3  9 30 24 42
D5V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 38 16 36  3
  subtype2 35 12 49  1
  subtype3 45 16 29  1
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 24  8
  subtype2 30  5
  subtype3 29  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24    8
  subtype2   30    5
  subtype3   29    7
    clus
vv   subtype1 subtype2 subtype3
  M0       24       30       29
  MX        8        5        7
D5V7, binary
          cls
clus         0   1
  subtype1  28 110
  subtype2  33  78
  subtype3  40  71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28  110
  subtype2   33   78
  subtype3   40   71
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       28       33       40
  MALE        110       78       71
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   134
  subtype2                                   110
  subtype3                                   111
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   4
  subtype2                                                   0
  subtype3                                                   0
D5V8, multiclass
D5V9, binary
          cls
clus         0   1
  subtype1  27 111
  subtype2  29  82
  subtype3  20  91
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27  111
  subtype2   29   82
  subtype3   20   91
     clus
vv    subtype1 subtype2 subtype3
  NO        27       29       20
  YES      111       82       91
D5V10, continuous
D5V11, continuous
D5V12, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 95 44
  subtype2 47 32
  subtype3 77 61
subtype1 subtype2 subtype3 
     139       79      138 
subtype1 subtype2 subtype3 
      44       32       61 
$subtype1
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
       37.28         9.07        57.90        17.10        57.44        21.17 
TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A4IF TCGA-BA-A6D8 TCGA-BA-A6DE TCGA-BB-4217 
        2.07         7.76        29.42        16.83         5.95         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
       95.05         4.60        18.31        10.19        17.59        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4723 
       20.98        37.87        14.04        71.05        20.52        23.70 
TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 
        6.38        15.19        22.78        21.11        14.33        34.68 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 
       35.67        16.83        35.54         6.35         9.01        14.73 
TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6997 
       12.20         9.07        13.94         1.38         2.73         3.29 
TCGA-CN-A49B TCGA-CN-A641 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CQ-6228 
       14.70        12.07        48.16        10.42        13.25        14.96 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7364 
       34.52        36.99        10.22        11.34         7.66        47.18 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7385 
       40.90        35.84         3.42         3.06         0.99        32.78 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 
       27.02        12.89        29.82         5.13         5.92        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5441 TCGA-CV-5443 
       48.36       139.40        17.16       129.21        94.85        91.50 
TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 
        7.07        21.04        90.08         5.46        20.52        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 
       11.24       126.08        42.35        65.82        28.31         4.14 
TCGA-CV-7091 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7236 
      111.12         9.01         5.23        21.76        56.68         4.73 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 
       36.00        26.20        17.10        95.34        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 
       36.13        35.54        17.82         0.46        25.94         0.07 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6517 
       14.86        54.90        16.27        16.60        21.99         9.60 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7589 
       23.01         2.53         5.03        18.64        16.96        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-DQ-7596 
       25.48        20.42        12.13        12.10        10.65        11.18 
TCGA-F7-7848 TCGA-F7-A50I TCGA-F7-A61V TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 
       18.54         3.02        12.62         0.82         1.02         1.45 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-KU-A66S TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5QE 
       34.75         4.01         7.33         8.32        29.92        23.70 
TCGA-P3-A5QF 
       10.85 

$subtype2
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6870 
       13.64        23.74        42.31        23.84        53.75        14.79 
TCGA-BA-6872 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BB-7863 TCGA-CN-4722 TCGA-CN-4729 
       12.99        11.54         5.65        13.87         6.31         5.13 
TCGA-CN-4734 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-6011 TCGA-CN-6020 
        7.43        12.39        11.54        12.49        13.94         3.19 
TCGA-CN-6994 TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 
        3.91        39.68         2.93        45.99         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-6471 
       32.35        34.75        48.03        43.00        29.59        39.52 
TCGA-CR-6478 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7373 
        6.02        11.64        11.51        15.75        47.34        29.23 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7395 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5973 
       34.06        19.92        30.54        17.95        76.47        86.83 
TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6945 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7089 
       62.43         4.70        12.03        53.92        10.98        64.80 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7252 TCGA-CV-7410 
      126.12         7.99        10.75       114.94         4.96       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7432 
       89.33         9.67        25.02        56.48       156.49        84.49 
TCGA-CV-7434 TCGA-CV-A6JE TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-A4ZB 
        7.13        24.66         7.76        27.22        25.41         3.42 
TCGA-DQ-7588 TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 
       14.04        19.20         0.10         0.20        13.38         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-A633 TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7632 
        4.34         0.07         1.61         0.92        15.95        14.50 
TCGA-MT-A51W 
        0.46 

$subtype3
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-6868 TCGA-BA-6873 
       15.16         9.30         8.15        20.48         6.21         3.72 
TCGA-BA-A6DB TCGA-BB-4224 TCGA-BB-7872 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4725 
        7.10         9.04        14.33         0.16         0.13        15.95 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 
        4.67        20.15        21.11        12.99        17.79        26.63 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 
       13.05        16.04         8.58         8.28        16.21        11.84 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       11.57         8.52        22.45        14.24        10.36        14.24 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 
        1.48        12.85         6.61         7.36         5.82         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
        3.75         1.51        21.50        54.54        46.75        29.46 
TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6221 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 
       11.21        15.72        32.88        38.14        32.35         4.21 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6474 TCGA-CR-6477 
       26.76        33.07        16.70        11.77        18.51        16.90 
TCGA-CR-6488 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 
       12.46         9.27        39.12        24.95        31.96         9.17 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       26.17        17.13        47.01        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       29.52         7.10        35.41       108.33        47.28        19.20 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
      107.51        80.12        17.06        13.35        23.05        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       60.49        43.23        40.96         9.57         2.14         9.70 
TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 
       26.43        19.79        15.06        30.05         6.08         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 
        8.38         2.50        18.81        12.66         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7255 
       12.89        71.21        47.47        31.33        18.97         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7415 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7429 
       18.41        57.47        22.85        34.09       100.54         3.48 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-A6JD TCGA-CX-7082 TCGA-CX-7085 
       19.73       142.49         6.38         5.98        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
       13.25        16.11         3.45         4.18         3.68        58.42 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-F7-8298 TCGA-F7-8489 
       35.54        33.86        18.02         9.83        16.11         0.43 
TCGA-F7-A50G TCGA-F7-A61W TCGA-F7-A620 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8634 
        0.49         0.46         0.43         0.16         1.81         0.99 
TCGA-HD-8635 TCGA-IQ-A61E TCGA-IQ-A61O TCGA-MT-A51X TCGA-P3-A5Q6 TCGA-P3-A5QA 
        0.99        19.30        11.84         1.12        15.75        54.31 

subtype1 subtype2 subtype3 
    0.07     0.07     0.13 
subtype1 subtype2 subtype3 
  139.40   210.94   142.49 
subtype1 subtype2 subtype3 
   17.59    14.50    15.44 
[1] "0.1 - 139.4 (17.6)" "0.1 - 210.9 (14.5)" "0.1 - 142.5 (15.4)"
  [1] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [79] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[241] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[295] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[349] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[355] "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [79] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[241] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[295] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[349] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[355] "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [79] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[241] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[295] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[337] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[349] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[355] "subtype1" "subtype1"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       4       19        22        59         3
  subtype2       3       17        15        37         2
  subtype3      16       18        21        72         1
D6V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  9 29 26 45
  subtype2  4 23 14 34
  subtype3 22 39 34 35
D6V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 43 14 36  3
  subtype2 34 12 17  1
  subtype3 41 18 61  1
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1 24  9
  subtype2 22  5
  subtype3 37  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24    9
  subtype2   22    5
  subtype3   37    6
    clus
vv   subtype1 subtype2 subtype3
  M0       24       22       37
  MX        9        5        6
D6V7, binary
          cls
clus         0   1
  subtype1  27 112
  subtype2  31  51
  subtype3  43  96
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27  112
  subtype2   31   51
  subtype3   43   96
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       27       31       43
  MALE        112       51       96
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   135
  subtype2                                    82
  subtype3                                   138
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           0
  subtype3                                                           1
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   4
  subtype2                                                   0
  subtype3                                                   0
D6V8, multiclass
D6V9, binary
          cls
clus         0   1
  subtype1  27 112
  subtype2  15  67
  subtype3  34 105
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27  112
  subtype2   15   67
  subtype3   34  105
     clus
vv    subtype1 subtype2 subtype3
  NO        27       15       34
  YES      112       67      105
D6V10, continuous
D6V11, continuous
D6V12, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 75 25
  subtype2 93 63
  subtype3 64 52
subtype1 subtype2 subtype3 
     100      156      116 
subtype1 subtype2 subtype3 
      25       63       52 
$subtype1
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        37.28         8.15        23.74        42.31        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-A4IF 
       23.84        20.48        53.75         6.21        21.17        29.42 
TCGA-BA-A6DA TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-7863 
       11.54         5.95         7.82         6.12         9.04        13.87 
TCGA-BB-7866 TCGA-BB-7870 TCGA-C9-A47Z TCGA-C9-A480 TCGA-CN-4726 TCGA-CN-4727 
       20.98        37.87         0.16         0.13         4.67         6.38 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 
        5.13        15.19        11.54        12.49        22.45         9.01 
TCGA-CN-6021 TCGA-CN-6995 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63Y 
        9.07         3.68         1.51        14.70        17.26         5.75 
TCGA-CN-A641 TCGA-CQ-5331 TCGA-CQ-6221 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7068 
       12.07        45.99        32.88        48.03        45.27        43.00 
TCGA-CR-6478 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7390 
        6.02        11.51        15.75         9.27        29.23        29.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6436 TCGA-CV-6955 
       94.85        76.47        86.83        60.49        62.43        10.98 
TCGA-CV-7089 TCGA-CV-7235 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7427 
       64.80        56.68       210.94        89.33         9.67       156.49 
TCGA-CV-7432 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 
       84.49        21.99         7.76        27.22        25.41        23.01 
TCGA-D6-A4Z9 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-F7-8489 
        3.68        18.02        14.04        20.42        12.13         0.43 
TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A620 TCGA-F7-A623 
        0.49        19.20         0.10        12.62         0.43         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-A633 
       13.38         1.87         0.07         0.16         0.99         1.61 
TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G 
        0.92        34.75        15.95        14.50        19.30        11.84 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        5.29        11.54         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5QA TCGA-P3-A5QF 
        3.65         8.32        54.31        10.85 

$subtype2
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 
       13.64         9.07        17.10        14.79         2.07        16.83 
TCGA-BA-A6DD TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        5.65        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       17.59        22.59        14.04        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       23.70        22.78        21.11        14.33        34.68        26.63 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-6010 
       35.67        16.83        12.39        35.54         6.35        14.73 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6023 
       13.94        12.20        14.24         1.48        12.85        13.94 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A63V TCGA-CQ-5323 
        1.38         2.73         3.91         3.29        15.88        48.16 
TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6225 
       39.68         2.93        10.42        28.60        34.75        13.25 
TCGA-CQ-6228 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       14.96        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7364 
       11.90        10.22        11.34        11.64         7.66        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 
       47.34        40.90        35.84         3.42         3.06         0.99 
TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       32.78        27.02        12.89         7.10         5.13         5.92 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       139.40        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 
       47.28        17.95        91.50         7.07        21.04        90.08 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        9.70         5.46        20.52        21.86        26.43        11.24 
TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7091 
       42.35        53.92        65.82        28.31         4.14       111.12 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7236 
        7.99         9.01         5.23        52.31        21.76         4.73 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97         2.10        36.13        57.47        35.54        17.82 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 
        0.46        22.85        25.02        25.94         0.07        14.86 
TCGA-CV-7425 TCGA-CV-7430 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 
       56.48        16.27         7.13       142.49        16.60        35.93 
TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7082 TCGA-D6-6517 TCGA-D6-6826 TCGA-D6-6827 
        5.98        24.66        10.39         9.60         5.03        18.64 
TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-7848 
        3.42        16.96        18.90        10.65        11.18        18.54 
TCGA-F7-8298 TCGA-F7-A50I TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-IQ-7631 
       16.11         3.02         0.82         1.02         1.45         4.01 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A67G TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE 
       11.84         7.33         3.65        29.92        15.75        23.70 

$subtype3
TCGA-BA-5559 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BA-A6DB TCGA-BB-7872 
       57.44        12.99         3.72         7.76         7.10        14.33 
TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4742 
       15.95        20.15        21.11        12.99        17.79        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
       16.04         8.58         8.28        16.21        11.84        11.57 
TCGA-CN-5370 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 
        8.52        10.36        14.24         3.19         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6996 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
        5.82         3.75        21.50        54.54        46.75        29.46 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6222 TCGA-CQ-6224 
       11.21         4.21        15.72        32.35        38.14        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6477 
        4.21        26.76        33.07        16.70        18.51        16.90 
TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       12.46        39.12        24.95        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 
       19.92        26.17        17.13        47.01        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7401 TCGA-CV-5436 TCGA-CV-5440 
       29.85        29.52        30.54        35.41        19.20       107.51 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 
       80.12        17.06        13.35        23.05        48.59        43.23 
TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6938 TCGA-CV-6942 TCGA-CV-6943 
       40.96         9.57         2.14         4.70       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 
       12.03        15.06        30.05         6.08         7.13         8.38 
TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7104 
        2.50       126.12        18.81        12.66         1.84        12.89 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 
       71.21        10.75       114.94        47.47        31.33        18.97 
TCGA-CV-7263 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7433 
       18.41        34.09       100.54        54.90         3.48        19.73 
TCGA-CV-7438 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6825 
        6.38        30.48        10.55        13.25         2.53        16.11 
TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7590 
        3.45         4.18        58.42        35.54        33.86        25.48 
TCGA-DQ-7592 TCGA-DQ-7594 TCGA-F7-A61W TCGA-H7-8502 TCGA-HD-8224 TCGA-HD-8635 
        9.83        12.10         0.46         4.34         1.81         0.99 
TCGA-IQ-A61H TCGA-IQ-A61J 
       13.51        14.47 

subtype1 subtype2 subtype3 
    0.07     0.07     0.46 
subtype1 subtype2 subtype3 
  210.94   142.49   126.12 
subtype1 subtype2 subtype3 
  13.135   16.830   16.455 
[1] "0.1 - 210.9 (13.1)" "0.1 - 142.5 (16.8)" "0.5 - 126.1 (16.5)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[235] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[253] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[355] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[235] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[253] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[355] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[229] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[235] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[253] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[355] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       8       17        19        43         1
  subtype2       5       18        24        80         3
  subtype3      11       23        15        56         2
D7V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 11 29 20 31
  subtype2 11 30 33 57
  subtype3 15 38 23 32
D7V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 41 15 24  1
  subtype2 49 15 51  3
  subtype3 34 15 46  1
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 32 16
  subtype2 29  9
  subtype3 28  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   16
  subtype2   29    9
  subtype3   28    3
    clus
vv   subtype1 subtype2 subtype3
  M0       32       29       28
  MX       16        9        3
D7V7, binary
          cls
clus         0   1
  subtype1  35  68
  subtype2  39 118
  subtype3  35  82
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   68
  subtype2   39  118
  subtype3   35   82
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       35       39       35
  MALE         68      118       82
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                   103
  subtype2                                   152
  subtype3                                   117
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   4
  subtype3                                                   0
D7V8, multiclass
D7V9, binary
          cls
clus         0   1
  subtype1  15  88
  subtype2  32 125
  subtype3  28  89
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   88
  subtype2   32  125
  subtype3   28   89
     clus
vv    subtype1 subtype2 subtype3
  NO        15       32       28
  YES       88      125       89
D7V10, continuous
D7V11, continuous
D7V12, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1   8   6
  subtype2  88  61
  subtype3 136  73
subtype1 subtype2 subtype3 
      14      149      209 
subtype1 subtype2 subtype3 
       6       61       73 
$subtype1
TCGA-BA-5152 TCGA-BA-7269 TCGA-BB-4217 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CR-7390 
       42.31         7.76         6.12        46.75         4.21        29.82 
TCGA-CR-7395 TCGA-CV-6933 TCGA-CV-6945 TCGA-CV-7235 TCGA-CV-7413 TCGA-CV-7429 
       30.54        90.08        12.03        56.68         9.67         3.48 
TCGA-CV-7440 TCGA-D6-6823 
       21.99        23.01 

$subtype2
TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-A4IF 
        8.15        20.48        57.44        12.99         3.72        29.42 
TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-7863 TCGA-BB-7872 TCGA-BB-8596 TCGA-C9-A47Z 
        7.10         5.95        13.87        14.33        71.05         0.16 
TCGA-C9-A480 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 
        0.13        15.95         4.67        20.15        21.11        12.99 
TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 
       17.79        26.63        13.05        16.04         8.58        35.54 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 
        8.28        16.21        11.84        11.57         8.52        22.45 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
       14.24        10.36        14.24        12.85         3.19         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5325 
        7.36         5.82         3.68         3.75         1.51        21.50 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6222 
       54.54        29.46        11.21        15.72        32.35        38.14 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       32.35         4.21        26.76        45.27        33.07        16.70 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 
       18.51        16.90        12.46        39.12        24.95        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 
        9.17        34.06        26.17        17.13        47.01        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5432 
       31.10        29.85        29.52         7.10        35.41       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
      108.33        47.28        19.20       107.51        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 
       13.35        23.05        48.59        60.49        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
        9.57         2.14        26.43        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7095 
        6.08         7.13         8.38         2.50       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 
       12.66         1.84        52.31        12.89        71.21        10.75 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 
       47.47        31.33        18.97        11.87         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7433 
       57.47        35.54         0.46        34.09       100.54        19.73 
TCGA-CV-7438 TCGA-CV-7568 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 
        6.38        30.48        10.39        10.55        13.25         2.53 
TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
       16.11         3.45         4.18         3.68        58.42        35.54 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-A50G 
       33.86        18.02         9.83        12.10        16.11         0.49 
TCGA-F7-A61V TCGA-F7-A61W TCGA-F7-A620 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8314 
       12.62         0.46         0.43         0.16         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J 
        0.99         0.99        15.95        19.30        13.51        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A51X TCGA-MT-A67A TCGA-P3-A5QA 
        5.29        11.54         1.12        12.89        54.31 

$subtype3
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5153 
       15.16        13.64        37.28         9.07        23.74        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       17.10        23.84        53.75         6.21        21.17        14.79 
TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BA-A6DA TCGA-BA-A6DD TCGA-BA-A6DF TCGA-BB-4223 
        2.07        16.83        11.54         5.65         7.82        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4722 
       22.59        20.98        37.87        14.04        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 
       23.70         6.38         5.13        15.19        22.78        21.11 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5361 
       14.33        34.68        35.67        16.83        12.39         6.35 
TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       11.54        12.49         9.01        14.73        13.94        12.20 
TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 
        1.48         9.07        13.94         1.38         2.73         3.91 
TCGA-CN-6997 TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63V TCGA-CN-A63Y TCGA-CN-A641 
        3.29        14.70        17.26        15.88         5.75        12.07 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 
       48.16        39.68         2.93        45.99        10.42        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 
       32.88        34.75        13.25        14.96        48.03        43.00 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       58.42        50.01        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7385 
        3.42         3.06        29.23         0.99        19.92        32.78 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       27.02        12.89         5.13         5.92        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      139.40        17.16        17.95        94.85        76.47        91.50 
TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 TCGA-CV-6936 
       86.83         7.07        21.04        62.43         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 
       20.52         4.70        21.86        11.24       126.08        42.35 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       53.92        65.82        10.98        28.31         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7183 
      126.12         7.99         9.01         5.23        21.76       114.94 
TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
        4.73        36.00        26.20        17.10        95.34         4.96 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7415 
       47.97        36.13        17.82       210.94        89.33        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.02        25.94         0.07        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       54.90        16.27        84.49         7.13       142.49        16.60 
TCGA-CV-7446 TCGA-CV-A6JD TCGA-CV-A6JE TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 
       35.93         5.98        24.66         7.76        27.22        25.41 
TCGA-D6-6517 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7588 
        9.60         5.03        18.64         3.42        16.96        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-DQ-7596 
       18.90        25.48        20.42        12.13        10.65        11.18 
TCGA-F7-7848 TCGA-F7-8489 TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A623 
       18.54         0.43         3.02        19.20         0.10         0.20 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
       13.38         1.87         4.34         0.07         0.82         1.02 
TCGA-HD-A633 TCGA-HD-A6I0 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-IQ-A61G 
        1.61         0.92        34.75         4.01        14.50        11.84 
TCGA-IQ-A61O TCGA-KU-A66S TCGA-MT-A51W TCGA-MT-A67D TCGA-MT-A67F TCGA-MT-A67G 
       11.84         7.33         0.46         1.84         3.65         3.65 
TCGA-MZ-A6I9 TCGA-P3-A5Q5 TCGA-P3-A5Q6 TCGA-P3-A5QE TCGA-P3-A5QF 
        8.32        29.92        15.75        23.70        10.85 

subtype1 subtype2 subtype3 
    3.48     0.13     0.07 
subtype1 subtype2 subtype3 
   90.08   129.21   210.94 
subtype1 subtype2 subtype3 
   22.50    15.95    15.75 
[1] "3.5 - 90.1 (22.5)"  "0.1 - 129.2 (15.9)" "0.1 - 210.9 (15.8)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[277] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[313] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[325] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[277] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[313] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[325] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[277] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[313] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[325] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       0        6         2         6         0
  subtype2      18       23        27        71         1
  subtype3       6       29        29       102         5
D8V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  0  7  2  5
  subtype2 25 42 36 38
  subtype3 12 48 38 77
D8V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1  7  2  4  0
  subtype2 51 21 55  1
  subtype3 66 22 62  4
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1  3  0
  subtype2 44  8
  subtype3 42 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    0
  subtype2   44    8
  subtype3   42   20
    clus
vv   subtype1 subtype2 subtype3
  M0        3       44       42
  MX        0        8       20
D8V7, binary
          cls
clus         0   1
  subtype1   3  11
  subtype2  49 102
  subtype3  57 155
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   11
  subtype2   49  102
  subtype3   57  155
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        3       49       57
  MALE         11      102      155
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    14
  subtype2                                   150
  subtype3                                   208
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           0
  subtype3                                                           1
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   1
  subtype3                                                   3
D8V8, multiclass
D8V9, binary
          cls
clus         0   1
  subtype1   4  10
  subtype2  36 115
  subtype3  35 177
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   10
  subtype2   36  115
  subtype3   35  177
     clus
vv    subtype1 subtype2 subtype3
  NO         4       36       35
  YES       10      115      177
D8V10, continuous
D8V11, continuous
D8V12, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 58 17
  subtype2 55 22
  subtype3 65 42
  subtype4 32 44
subtype1 subtype2 subtype3 subtype4 
      75       77      107       76 
subtype1 subtype2 subtype3 subtype4 
      17       22       42       44 
$subtype1
TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-A4IF TCGA-BA-A6DA 
        8.15        42.31        23.84        20.48        29.42        11.54 
TCGA-BA-A6DD TCGA-BA-A6DE TCGA-BA-A6DF TCGA-BB-7863 TCGA-BB-7872 TCGA-C9-A47Z 
        5.65         5.95         7.82        13.87        14.33         0.16 
TCGA-C9-A480 TCGA-CN-6998 TCGA-CN-A49B TCGA-CN-A63Y TCGA-CQ-5325 TCGA-CQ-5331 
        0.13         1.51        14.70         5.75        21.50        45.99 
TCGA-CQ-5333 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-6477 
       11.21        48.03        45.27        33.07        43.00        16.90 
TCGA-CR-6478 TCGA-CR-6492 TCGA-CR-6493 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 
        6.02        15.75         9.27        94.85        76.47        86.83 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7423 
       48.59        60.49        40.96        89.33         9.67       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7568 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6823 
       56.48       156.49        30.48         7.76        13.25        23.01 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-F7-8489 
        4.18         3.68        18.02        14.04         9.83         0.43 
TCGA-F7-A50G TCGA-F7-A50I TCGA-F7-A50J TCGA-F7-A61S TCGA-F7-A61V TCGA-F7-A61W 
        0.49         3.02        19.20         0.10        12.62         0.46 
TCGA-F7-A620 TCGA-F7-A623 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-A633 
        0.43         0.20         1.87         0.16         0.99         1.61 
TCGA-HD-A6I0 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-IQ-A61E TCGA-IQ-A61G TCGA-IQ-A61J 
        0.92        15.95        14.50        19.30        11.84        14.47 
TCGA-IQ-A61K TCGA-IQ-A61L TCGA-MT-A51W TCGA-MT-A51X TCGA-MT-A67A TCGA-MT-A67D 
        5.29        11.54         0.46         1.12        12.89         1.84 
TCGA-MT-A67F TCGA-P3-A5Q5 TCGA-P3-A5QA 
        3.65        29.92        54.31 

$subtype2
TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-A6D8 TCGA-BB-7861 
       17.10        21.17        14.79         2.07        16.83        10.19 
TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 
       17.59        22.59        20.98        37.87        14.04        20.52 
TCGA-CN-4739 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 
       34.68        14.73        12.20        13.94         1.38         2.73 
TCGA-CN-A63U TCGA-CN-A641 TCGA-CQ-5324 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 
       17.26        12.07        39.68        10.42        32.88        13.25 
TCGA-CQ-6228 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       14.96        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-7364 TCGA-CR-7374 
       58.42        34.52        36.99        11.90        47.18         0.99 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 
       27.02        12.89         5.13        29.92       139.40       129.21 
TCGA-CV-5435 TCGA-CV-5443 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6962 TCGA-CV-7101 
       47.28        91.50        11.24        42.35         4.14         5.23 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7415 
       36.00        17.10        95.34        17.82         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7446 TCGA-CV-A6JE TCGA-CX-7082 
       25.94         0.07        14.86        35.93        24.66        10.39 
TCGA-D6-A4ZB TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
        3.42        16.96        18.90        25.48        20.42        12.13 
TCGA-DQ-7595 TCGA-DQ-7596 TCGA-H7-7774 TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-A61O 
       10.65        11.18        13.38         0.82         4.01        11.84 
TCGA-KU-A66S TCGA-MT-A67G TCGA-MZ-A6I9 TCGA-P3-A5QE TCGA-P3-A5QF 
        7.33         3.65         8.32        23.70        10.85 

$subtype3
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       53.75        57.44         6.21        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4227 TCGA-CN-4733 TCGA-CN-4738 TCGA-CN-6011 TCGA-CN-6013 
        6.12         4.37        21.11        14.33        13.94        14.24 
TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5323 
        9.07         5.82         3.68         3.75         3.29        48.16 
TCGA-CQ-5327 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6229 TCGA-CR-6470 
       54.54         4.21        28.60        34.75        26.76        50.01 
TCGA-CR-6471 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       39.52        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       24.95        29.23        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       17.13        32.78        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 
       29.52        30.54         5.92        35.41        48.36        17.16 
TCGA-CV-5439 TCGA-CV-5970 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       17.95        13.35        43.23        21.04        62.43        90.08 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6953 
        9.70         5.46        21.86       126.08         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7090 
       65.82        10.98         8.38        28.31        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7180 TCGA-CV-7183 
      111.12        12.66         7.99         9.01        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       56.68        26.20         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       36.13        54.90        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 
      142.49        16.60         6.38        21.99        10.55        27.22 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       25.41         9.60         2.53        16.11         5.03        18.64 
TCGA-DQ-5624 TCGA-F7-7848 TCGA-HD-7229 TCGA-HD-7917 TCGA-HL-7533 
       58.42        18.54         0.07         1.02        34.75 

$subtype4
TCGA-BA-A6DB TCGA-BB-8596 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5370 TCGA-CN-6016 
        7.10        71.05        13.05         8.58         8.52        10.36 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 
       14.24         1.48        12.85         3.19         6.61         7.36 
TCGA-CN-6994 TCGA-CN-A63V TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6219 
        3.91        15.88         2.93        46.75        29.46        15.72 
TCGA-CQ-6220 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-7067 TCGA-CQ-7069 
       32.35        38.14        32.35         4.21        16.70        29.59 
TCGA-CR-6474 TCGA-CR-6488 TCGA-CR-7377 TCGA-CR-7386 TCGA-CR-7397 TCGA-CV-5434 
       18.51        12.46         9.17        47.01         7.10       108.33 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5978 
       19.20       107.51        80.12        17.06        23.05         7.07 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6943 
        9.57         2.14        20.52         4.70        26.43        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-7095 
       12.03        15.06        30.05         7.13         2.50        18.81 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7236 
        1.84        52.31        12.89        21.76        71.21         4.73 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.47        31.33        18.97        18.41        57.47        35.54 
TCGA-CV-7410 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7429 TCGA-CV-A6JD TCGA-D6-8568 
      210.94        25.02        34.09         3.48         5.98         3.45 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7594 TCGA-F7-8298 TCGA-H7-8502 TCGA-HD-8224 
       35.54        33.86        12.10        16.11         4.34         1.81 
TCGA-HD-8314 TCGA-HD-8635 TCGA-IQ-A61H TCGA-P3-A5Q6 
        1.45         0.99        13.51        15.75 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.07     0.07     0.99 
subtype1 subtype2 subtype3 subtype4 
  156.49   139.40   142.49   210.94 
subtype1 subtype2 subtype3 subtype4 
  12.890   16.960   19.920   15.735 
[1] "0.1 - 156.5 (12.9)" "0.1 - 139.4 (17.0)" "0.1 - 142.5 (19.9)"
[4] "1.0 - 210.9 (15.7)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [49] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
 [55] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [73] "subtype4" "subtype4" "subtype1" "subtype2" "subtype1" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
 [85] "subtype4" "subtype2" "subtype4" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[157] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype4"
[163] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[181] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
[187] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[229] "subtype4" "subtype2" "subtype4" "subtype1" "subtype1" "subtype2"
[235] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype2" "subtype1" "subtype4" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[277] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[289] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype4"
[307] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[319] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[331] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [49] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
 [55] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [73] "subtype4" "subtype4" "subtype1" "subtype2" "subtype1" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
 [85] "subtype4" "subtype2" "subtype4" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[157] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype4"
[163] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[181] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
[187] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[229] "subtype4" "subtype2" "subtype4" "subtype1" "subtype1" "subtype2"
[235] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype2" "subtype1" "subtype4" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[277] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[289] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype4"
[307] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[319] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[331] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [49] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
 [55] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [73] "subtype4" "subtype4" "subtype1" "subtype2" "subtype1" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
 [85] "subtype4" "subtype2" "subtype4" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[157] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype4"
[163] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[175] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[181] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
[187] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[217] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[229] "subtype4" "subtype2" "subtype4" "subtype1" "subtype1" "subtype2"
[235] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype2" "subtype1" "subtype4" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[277] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype3"
[289] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype4"
[307] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[319] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[331] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
D9V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       8       18        18        27         0
  subtype2       0        5        14        32         2
  subtype3      12       18        11        54         1
  subtype4       3       15        12        42         1
D9V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 11 26 18 17
  subtype2  4 13 17 20
  subtype3 15 23 19 40
  subtype4  5 25 17 26
D9V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 33 12 18  0
  subtype2 18  5 26  2
  subtype3 41 13 31  0
  subtype4 19 13 32  1
D9V5, multiclass
D9V6, binary
          cls
clus        0  1
  subtype1 31 14
  subtype2  7  8
  subtype3 26  0
  subtype4 12  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   14
  subtype2    7    8
  subtype3   26    0
  subtype4   12    6
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       31        7       26       12
  MX       14        8        0        6
D9V7, binary
          cls
clus        0  1
  subtype1 33 45
  subtype2 14 63
  subtype3 26 82
  subtype4 27 50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   45
  subtype2   14   63
  subtype3   26   82
  subtype4   27   50
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       33       14       26       27
  MALE         45       63       82       50
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                    77
  subtype2                                    74
  subtype3                                   108
  subtype4                                    76
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
  subtype4                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   1
  subtype2                                                   2
  subtype3                                                   0
  subtype4                                                   1
D9V8, multiclass
D9V9, binary
          cls
clus        0  1
  subtype1  8 70
  subtype2 12 65
  subtype3 24 84
  subtype4 14 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   70
  subtype2   12   65
  subtype3   24   84
  subtype4   14   63
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         8       12       24       14
  YES       70       65       84       63
D9V10, continuous
D9V11, continuous
D9V12, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1  1  3
  subtype2  9  9
  subtype3 57 11
  subtype4 21 24
  subtype5 81 49
  subtype6 41 29
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       4       18       68       45      130       70 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       3        9       11       24       49       29 
$subtype1
TCGA-BB-7863 TCGA-CV-6945 TCGA-CV-7413 TCGA-CV-7429 
       13.87        12.03         9.67         3.48 

$subtype2
TCGA-BA-A6DD TCGA-CN-A63V TCGA-CQ-6221 TCGA-CQ-7069 TCGA-CV-7410 TCGA-CV-7411 
        5.65        15.88        32.88        29.59       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7425 TCGA-CV-A6JD TCGA-CV-A6JE 
        0.46        25.02         0.07        56.48         5.98        24.66 
TCGA-D6-A4ZB TCGA-F7-A50I TCGA-HD-A633 TCGA-IQ-A61O TCGA-MT-A67D TCGA-P3-A5Q6 
        3.42         3.02         1.61        11.84         1.84        15.75 

$subtype3
TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       42.31        23.84        53.75         6.21        21.17        14.79 
TCGA-BA-A6DA TCGA-BA-A6DF TCGA-BB-4217 TCGA-BB-7861 TCGA-BB-7866 TCGA-BB-7870 
       11.54         7.82         6.12        10.19        20.98        37.87 
TCGA-BB-8601 TCGA-C9-A47Z TCGA-CN-A49B TCGA-CN-A63U TCGA-CN-A63Y TCGA-CQ-5323 
       20.52         0.16        14.70        17.26         5.75        48.16 
TCGA-CQ-5331 TCGA-CQ-6223 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       45.99        34.75        48.03        43.00        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 
       37.87        26.24        58.42        36.99         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7373 
       10.22        11.51        15.75         9.27        47.18        29.23 
TCGA-CR-7385 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-6936 TCGA-CV-6953 TCGA-CV-7409 
       32.78        76.47        86.83         5.46        53.92        17.82 
TCGA-CV-7427 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-7588 TCGA-DQ-7590 
      156.49         7.76        25.41        23.01        14.04        25.48 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-DQ-7596 TCGA-F7-8489 TCGA-F7-A61S 
       20.42        12.13        10.65        11.18         0.43         0.10 
TCGA-F7-A623 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-A6I0 TCGA-HL-7533 
        0.20        13.38         1.87         0.07         0.92        34.75 
TCGA-IQ-7632 TCGA-IQ-A61G TCGA-MT-A51W TCGA-MT-A67F TCGA-MZ-A6I9 TCGA-P3-A5Q5 
       14.50        11.84         0.46         3.65         8.32        29.92 
TCGA-P3-A5QE TCGA-P3-A5QF 
       23.70        10.85 

$subtype4
TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-6872 TCGA-BB-4227 TCGA-CN-6011 TCGA-CN-6018 
        8.15        20.48        12.99         4.37        13.94         1.48 
TCGA-CN-6021 TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
        9.07        39.68         2.93         4.21        28.60        32.35 
TCGA-CR-6471 TCGA-CR-6484 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7380 
       39.52        11.64        47.34        40.90        35.84        19.92 
TCGA-CR-7390 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-6436 
       29.82        48.36        17.16        17.95        94.85        62.43 
TCGA-CV-6938 TCGA-CV-6942 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7090 
        4.70       126.08        65.82        10.98        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7183 TCGA-CV-7252 TCGA-CV-7254 
      111.12         7.99         9.01       114.94         4.96        47.97 
TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6517 
       54.90        84.49         7.13        21.99        27.22         9.60 
TCGA-D6-6826 TCGA-H7-8502 TCGA-HD-7917 
        5.03         4.34         1.02 

$subtype5
TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-A4IF TCGA-BA-A6DB TCGA-BA-A6DE TCGA-BB-7872 
       57.44         3.72        29.42         7.10         5.95        14.33 
TCGA-BB-8596 TCGA-C9-A480 TCGA-CN-4733 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5370 
       71.05         0.13        21.11        13.05         8.58         8.52 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 
       14.24        10.36        14.24        12.85         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5327 
        5.82         3.68         3.75         1.51        21.50        54.54 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 
       46.75        29.46        11.21        15.72        38.14        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6474 
        4.21        26.76        45.27        33.07        16.70        18.51 
TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7377 
       16.90        12.46        39.12        24.95        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 
       34.06        26.17        17.13        47.01        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5432 
       29.85        29.52        30.54         7.10        35.41       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
      108.33        47.28        19.20       107.51        80.12        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 
       13.35        23.05        48.59        60.49        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 
        9.57         2.14         9.70        26.43        19.79        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 
       30.05         6.08         7.13         8.38         2.50        18.81 
TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 
       12.66         1.84        52.31        12.89        71.21        10.75 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       47.47        31.33        18.97         2.10        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-7568 
       35.54        34.09       100.54        19.73         6.38        30.48 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 
       10.39        10.55        13.25         2.53        16.11         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         3.68        58.42        35.54        33.86        18.02 
TCGA-DQ-7592 TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-A50G TCGA-F7-A50J TCGA-F7-A61V 
        9.83        12.10        16.11         0.49        19.20        12.62 
TCGA-F7-A61W TCGA-F7-A620 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.46         0.43         0.16         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-A61E TCGA-IQ-A61H TCGA-IQ-A61J TCGA-IQ-A61K 
        0.99        15.95        19.30        13.51        14.47         5.29 
TCGA-IQ-A61L TCGA-MT-A51X TCGA-MT-A67A TCGA-P3-A5QA 
       11.54         1.12        12.89        54.31 

$subtype6
TCGA-BA-5555 TCGA-BA-6871 TCGA-BA-7269 TCGA-BA-A6D8 TCGA-BB-7862 TCGA-BB-7864 
       17.10         2.07         7.76        16.83        17.59        22.59 
TCGA-BB-7871 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6020 
       14.04        14.33        34.68        14.73        12.20         3.19 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-A641 
       13.94         1.38         2.73         3.91         3.29        12.07 
TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-6470 TCGA-CR-6472 
       10.42        13.25        14.96        11.77        50.01        34.52 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7388 
       11.34         7.66         3.42         3.06         0.99        27.02 
TCGA-CR-7389 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5443 
       12.89         5.13         5.92        29.92       139.40        91.50 
TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 
        7.07        21.04        90.08        20.52        21.86        11.24 
TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 
       42.35        28.31         4.14         5.23        21.76        56.68 
TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
        4.73        36.00        26.20        17.10        95.34        11.87 
TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7435 
       36.13        22.85        25.94        14.86        16.27       142.49 
TCGA-CV-7437 TCGA-CV-7446 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-7848 
       16.60        35.93        18.64        16.96        18.90        18.54 
TCGA-HD-7754 TCGA-IQ-7631 TCGA-KU-A66S TCGA-MT-A67G 
        0.82         4.01         7.33         3.65 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    3.48     0.07     0.07     1.02     0.13     0.82 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   13.87   210.94   156.49   126.12   129.21   142.49 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  10.850   13.795   16.505   20.480   16.110   14.910 
[1] "3.5 - 13.9 (10.8)"  "0.1 - 210.9 (13.8)" "0.1 - 156.5 (16.5)"
[4] "1.0 - 126.1 (20.5)" "0.1 - 129.2 (16.1)" "0.8 - 142.5 (14.9)"
  [1] "subtype4" "subtype3" "subtype6" "subtype3" "subtype4" "subtype3"
  [7] "subtype5" "subtype3" "subtype3" "subtype3" "subtype6" "subtype4"
 [13] "subtype5" "subtype6" "subtype5" "subtype6" "subtype3" "subtype5"
 [19] "subtype2" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [25] "subtype6" "subtype1" "subtype6" "subtype3" "subtype3" "subtype6"
 [31] "subtype5" "subtype5" "subtype3" "subtype3" "subtype5" "subtype5"
 [37] "subtype6" "subtype6" "subtype5" "subtype5" "subtype5" "subtype6"
 [43] "subtype4" "subtype6" "subtype5" "subtype5" "subtype5" "subtype4"
 [49] "subtype5" "subtype6" "subtype4" "subtype5" "subtype6" "subtype5"
 [55] "subtype6" "subtype5" "subtype6" "subtype6" "subtype5" "subtype5"
 [61] "subtype6" "subtype5" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype6" "subtype3" "subtype4" "subtype5" "subtype4" "subtype5"
 [73] "subtype5" "subtype5" "subtype3" "subtype6" "subtype5" "subtype4"
 [79] "subtype4" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [85] "subtype5" "subtype6" "subtype5" "subtype6" "subtype5" "subtype3"
 [91] "subtype5" "subtype5" "subtype5" "subtype3" "subtype2" "subtype3"
 [97] "subtype6" "subtype3" "subtype3" "subtype3" "subtype3" "subtype6"
[103] "subtype4" "subtype6" "subtype3" "subtype5" "subtype5" "subtype3"
[109] "subtype3" "subtype3" "subtype6" "subtype4" "subtype6" "subtype5"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype4"
[121] "subtype4" "subtype4" "subtype6" "subtype6" "subtype5" "subtype3"
[127] "subtype6" "subtype5" "subtype5" "subtype5" "subtype4" "subtype5"
[133] "subtype5" "subtype3" "subtype5" "subtype6" "subtype6" "subtype4"
[139] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype6" "subtype6" "subtype5" "subtype6" "subtype4" "subtype6"
[151] "subtype4" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
[157] "subtype5" "subtype4" "subtype3" "subtype6" "subtype5" "subtype5"
[163] "subtype5" "subtype5" "subtype3" "subtype5" "subtype5" "subtype6"
[169] "subtype5" "subtype5" "subtype6" "subtype4" "subtype5" "subtype6"
[175] "subtype5" "subtype5" "subtype3" "subtype6" "subtype4" "subtype6"
[181] "subtype5" "subtype6" "subtype4" "subtype5" "subtype1" "subtype6"
[187] "subtype5" "subtype5" "subtype5" "subtype3" "subtype4" "subtype4"
[193] "subtype5" "subtype5" "subtype6" "subtype5" "subtype6" "subtype4"
[199] "subtype4" "subtype4" "subtype5" "subtype5" "subtype4" "subtype4"
[205] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype5"
[211] "subtype5" "subtype4" "subtype6" "subtype6" "subtype5" "subtype6"
[217] "subtype5" "subtype6" "subtype5" "subtype6" "subtype6" "subtype4"
[223] "subtype6" "subtype4" "subtype5" "subtype6" "subtype5" "subtype5"
[229] "subtype5" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype6" "subtype2" "subtype6" "subtype2" "subtype5" "subtype5"
[241] "subtype6" "subtype2" "subtype3" "subtype4" "subtype1" "subtype6"
[247] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype5"
[253] "subtype4" "subtype6" "subtype5" "subtype2" "subtype2" "subtype5"
[259] "subtype5" "subtype3" "subtype4" "subtype5" "subtype3" "subtype4"
[265] "subtype3" "subtype5" "subtype5" "subtype4" "subtype6" "subtype5"
[271] "subtype5" "subtype5" "subtype2" "subtype5" "subtype5" "subtype6"
[277] "subtype5" "subtype5" "subtype3" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[289] "subtype5" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[295] "subtype5" "subtype5" "subtype5" "subtype3" "subtype3" "subtype3"
[301] "subtype4" "subtype3" "subtype5" "subtype6" "subtype4" "subtype5"
[307] "subtype5" "subtype5" "subtype5" "subtype2" "subtype3" "subtype3"
[313] "subtype5" "subtype6" "subtype3" "subtype5" "subtype3" "subtype5"
[319] "subtype5" "subtype5" "subtype5" "subtype2" "subtype6" "subtype3"
[325] "subtype5" "subtype5" "subtype2" "subtype3" "subtype6" "subtype3"
[331] "subtype3" "subtype2" "subtype5" "subtype3" "subtype3"
  [1] "subtype4" "subtype3" "subtype6" "subtype3" "subtype4" "subtype3"
  [7] "subtype5" "subtype3" "subtype3" "subtype3" "subtype6" "subtype4"
 [13] "subtype5" "subtype6" "subtype5" "subtype6" "subtype3" "subtype5"
 [19] "subtype2" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [25] "subtype6" "subtype1" "subtype6" "subtype3" "subtype3" "subtype6"
 [31] "subtype5" "subtype5" "subtype3" "subtype3" "subtype5" "subtype5"
 [37] "subtype6" "subtype6" "subtype5" "subtype5" "subtype5" "subtype6"
 [43] "subtype4" "subtype6" "subtype5" "subtype5" "subtype5" "subtype4"
 [49] "subtype5" "subtype6" "subtype4" "subtype5" "subtype6" "subtype5"
 [55] "subtype6" "subtype5" "subtype6" "subtype6" "subtype5" "subtype5"
 [61] "subtype6" "subtype5" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype6" "subtype3" "subtype4" "subtype5" "subtype4" "subtype5"
 [73] "subtype5" "subtype5" "subtype3" "subtype6" "subtype5" "subtype4"
 [79] "subtype4" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [85] "subtype5" "subtype6" "subtype5" "subtype6" "subtype5" "subtype3"
 [91] "subtype5" "subtype5" "subtype5" "subtype3" "subtype2" "subtype3"
 [97] "subtype6" "subtype3" "subtype3" "subtype3" "subtype3" "subtype6"
[103] "subtype4" "subtype6" "subtype3" "subtype5" "subtype5" "subtype3"
[109] "subtype3" "subtype3" "subtype6" "subtype4" "subtype6" "subtype5"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype4"
[121] "subtype4" "subtype4" "subtype6" "subtype6" "subtype5" "subtype3"
[127] "subtype6" "subtype5" "subtype5" "subtype5" "subtype4" "subtype5"
[133] "subtype5" "subtype3" "subtype5" "subtype6" "subtype6" "subtype4"
[139] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype6" "subtype6" "subtype5" "subtype6" "subtype4" "subtype6"
[151] "subtype4" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
[157] "subtype5" "subtype4" "subtype3" "subtype6" "subtype5" "subtype5"
[163] "subtype5" "subtype5" "subtype3" "subtype5" "subtype5" "subtype6"
[169] "subtype5" "subtype5" "subtype6" "subtype4" "subtype5" "subtype6"
[175] "subtype5" "subtype5" "subtype3" "subtype6" "subtype4" "subtype6"
[181] "subtype5" "subtype6" "subtype4" "subtype5" "subtype1" "subtype6"
[187] "subtype5" "subtype5" "subtype5" "subtype3" "subtype4" "subtype4"
[193] "subtype5" "subtype5" "subtype6" "subtype5" "subtype6" "subtype4"
[199] "subtype4" "subtype4" "subtype5" "subtype5" "subtype4" "subtype4"
[205] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype5"
[211] "subtype5" "subtype4" "subtype6" "subtype6" "subtype5" "subtype6"
[217] "subtype5" "subtype6" "subtype5" "subtype6" "subtype6" "subtype4"
[223] "subtype6" "subtype4" "subtype5" "subtype6" "subtype5" "subtype5"
[229] "subtype5" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype6" "subtype2" "subtype6" "subtype2" "subtype5" "subtype5"
[241] "subtype6" "subtype2" "subtype3" "subtype4" "subtype1" "subtype6"
[247] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype5"
[253] "subtype4" "subtype6" "subtype5" "subtype2" "subtype2" "subtype5"
[259] "subtype5" "subtype3" "subtype4" "subtype5" "subtype3" "subtype4"
[265] "subtype3" "subtype5" "subtype5" "subtype4" "subtype6" "subtype5"
[271] "subtype5" "subtype5" "subtype2" "subtype5" "subtype5" "subtype6"
[277] "subtype5" "subtype5" "subtype3" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[289] "subtype5" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[295] "subtype5" "subtype5" "subtype5" "subtype3" "subtype3" "subtype3"
[301] "subtype4" "subtype3" "subtype5" "subtype6" "subtype4" "subtype5"
[307] "subtype5" "subtype5" "subtype5" "subtype2" "subtype3" "subtype3"
[313] "subtype5" "subtype6" "subtype3" "subtype5" "subtype3" "subtype5"
[319] "subtype5" "subtype5" "subtype5" "subtype2" "subtype6" "subtype3"
[325] "subtype5" "subtype5" "subtype2" "subtype3" "subtype6" "subtype3"
[331] "subtype3" "subtype2" "subtype5" "subtype3" "subtype3"
  [1] "subtype4" "subtype3" "subtype6" "subtype3" "subtype4" "subtype3"
  [7] "subtype5" "subtype3" "subtype3" "subtype3" "subtype6" "subtype4"
 [13] "subtype5" "subtype6" "subtype5" "subtype6" "subtype3" "subtype5"
 [19] "subtype2" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [25] "subtype6" "subtype1" "subtype6" "subtype3" "subtype3" "subtype6"
 [31] "subtype5" "subtype5" "subtype3" "subtype3" "subtype5" "subtype5"
 [37] "subtype6" "subtype6" "subtype5" "subtype5" "subtype5" "subtype6"
 [43] "subtype4" "subtype6" "subtype5" "subtype5" "subtype5" "subtype4"
 [49] "subtype5" "subtype6" "subtype4" "subtype5" "subtype6" "subtype5"
 [55] "subtype6" "subtype5" "subtype6" "subtype6" "subtype5" "subtype5"
 [61] "subtype6" "subtype5" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype6" "subtype3" "subtype4" "subtype5" "subtype4" "subtype5"
 [73] "subtype5" "subtype5" "subtype3" "subtype6" "subtype5" "subtype4"
 [79] "subtype4" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [85] "subtype5" "subtype6" "subtype5" "subtype6" "subtype5" "subtype3"
 [91] "subtype5" "subtype5" "subtype5" "subtype3" "subtype2" "subtype3"
 [97] "subtype6" "subtype3" "subtype3" "subtype3" "subtype3" "subtype6"
[103] "subtype4" "subtype6" "subtype3" "subtype5" "subtype5" "subtype3"
[109] "subtype3" "subtype3" "subtype6" "subtype4" "subtype6" "subtype5"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype4"
[121] "subtype4" "subtype4" "subtype6" "subtype6" "subtype5" "subtype3"
[127] "subtype6" "subtype5" "subtype5" "subtype5" "subtype4" "subtype5"
[133] "subtype5" "subtype3" "subtype5" "subtype6" "subtype6" "subtype4"
[139] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype6" "subtype6" "subtype5" "subtype6" "subtype4" "subtype6"
[151] "subtype4" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
[157] "subtype5" "subtype4" "subtype3" "subtype6" "subtype5" "subtype5"
[163] "subtype5" "subtype5" "subtype3" "subtype5" "subtype5" "subtype6"
[169] "subtype5" "subtype5" "subtype6" "subtype4" "subtype5" "subtype6"
[175] "subtype5" "subtype5" "subtype3" "subtype6" "subtype4" "subtype6"
[181] "subtype5" "subtype6" "subtype4" "subtype5" "subtype1" "subtype6"
[187] "subtype5" "subtype5" "subtype5" "subtype3" "subtype4" "subtype4"
[193] "subtype5" "subtype5" "subtype6" "subtype5" "subtype6" "subtype4"
[199] "subtype4" "subtype4" "subtype5" "subtype5" "subtype4" "subtype4"
[205] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype5"
[211] "subtype5" "subtype4" "subtype6" "subtype6" "subtype5" "subtype6"
[217] "subtype5" "subtype6" "subtype5" "subtype6" "subtype6" "subtype4"
[223] "subtype6" "subtype4" "subtype5" "subtype6" "subtype5" "subtype5"
[229] "subtype5" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype6" "subtype2" "subtype6" "subtype2" "subtype5" "subtype5"
[241] "subtype6" "subtype2" "subtype3" "subtype4" "subtype1" "subtype6"
[247] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype5"
[253] "subtype4" "subtype6" "subtype5" "subtype2" "subtype2" "subtype5"
[259] "subtype5" "subtype3" "subtype4" "subtype5" "subtype3" "subtype4"
[265] "subtype3" "subtype5" "subtype5" "subtype4" "subtype6" "subtype5"
[271] "subtype5" "subtype5" "subtype2" "subtype5" "subtype5" "subtype6"
[277] "subtype5" "subtype5" "subtype3" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[289] "subtype5" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[295] "subtype5" "subtype5" "subtype5" "subtype3" "subtype3" "subtype3"
[301] "subtype4" "subtype3" "subtype5" "subtype6" "subtype4" "subtype5"
[307] "subtype5" "subtype5" "subtype5" "subtype2" "subtype3" "subtype3"
[313] "subtype5" "subtype6" "subtype3" "subtype5" "subtype3" "subtype5"
[319] "subtype5" "subtype5" "subtype5" "subtype2" "subtype6" "subtype3"
[325] "subtype5" "subtype5" "subtype2" "subtype3" "subtype6" "subtype3"
[331] "subtype3" "subtype2" "subtype5" "subtype3" "subtype3"
D10V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  subtype1       0        1         1         2         0
  subtype2       0        3         3        11         0
  subtype3       4        8        13        21         1
  subtype4       1       10         5        26         1
  subtype5      16       24        23        60         0
  subtype6       2       10        10        35         2
D10V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  0  1  1  2
  subtype2  0  6  2 10
  subtype3  7 14 10 18
  subtype4  2 11  8 22
  subtype5 21 40 33 29
  subtype6  5 15 17 22
D10V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1  2  0  2  0
  subtype2  8  1  5  0
  subtype3 21 12 11  1
  subtype4 13  6 16  0
  subtype5 45 18 48  0
  subtype6 22  6 25  2
D10V5, multiclass
D10V6, binary
          cls
clus        0  1
  subtype1  0  0
  subtype2  6  5
  subtype3 16 11
  subtype4  6  1
  subtype5 39  8
  subtype6  9  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    0
  subtype2    6    5
  subtype3   16   11
  subtype4    6    1
  subtype5   39    8
  subtype6    9    3
D10V7, binary
          cls
clus        0  1
  subtype1  2  2
  subtype2  6 14
  subtype3 18 50
  subtype4 10 36
  subtype5 45 87
  subtype6 19 51
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    2
  subtype2    6   14
  subtype3   18   50
  subtype4   10   36
  subtype5   45   87
  subtype6   19   51
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA
  subtype1                                     4
  subtype2                                    19
  subtype3                                    66
  subtype4                                    46
  subtype5                                   131
  subtype6                                    69
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA  SPINDLE CELL VARIANT
  subtype1                                                           0
  subtype2                                                           1
  subtype3                                                           0
  subtype4                                                           0
  subtype5                                                           0
  subtype6                                                           0
          vv
clus       HEAD AND NECK SQUAMOUS CELL CARCINOMA BASALOID TYPE
  subtype1                                                   0
  subtype2                                                   0
  subtype3                                                   2
  subtype4                                                   0
  subtype5                                                   1
  subtype6                                                   1
D10V8, multiclass
D10V9, binary
          cls
clus         0   1
  subtype1   0   4
  subtype2   0  20
  subtype3  11  57
  subtype4  12  34
  subtype5  24 108
  subtype6  11  59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    4
  subtype2    0   20
  subtype3   11   57
  subtype4   12   34
  subtype5   24  108
  subtype6   11   59
D10V10, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       1        9       43       22       62       49 
  [1] "subtype4" "subtype6" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype6" "subtype4" "subtype5" "subtype6" "subtype5" "subtype6"
 [13] "subtype3" "subtype2" "subtype5" "subtype3" "subtype4" "subtype6"
 [19] "subtype6" "subtype3" "subtype6" "subtype5" "subtype6" "subtype6"
 [25] "subtype5" "subtype5" "subtype6" "subtype4" "subtype6" "subtype5"
 [31] "subtype5" "subtype5" "subtype4" "subtype6" "subtype5" "subtype6"
 [37] "subtype5" "subtype6" "subtype6" "subtype6" "subtype5" "subtype3"
 [43] "subtype3" "subtype2" "subtype6" "subtype3" "subtype4" "subtype5"
 [49] "subtype4" "subtype5" "subtype3" "subtype6" "subtype5" "subtype4"
 [55] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype5"
 [61] "subtype6" "subtype3" "subtype6" "subtype3" "subtype3" "subtype4"
 [67] "subtype3" "subtype5" "subtype6" "subtype6" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype6"
 [79] "subtype6" "subtype3" "subtype6" "subtype5" "subtype5" "subtype5"
 [85] "subtype5" "subtype3" "subtype5" "subtype6" "subtype6" "subtype4"
 [91] "subtype5" "subtype5" "subtype5" "subtype6" "subtype6" "subtype5"
 [97] "subtype6" "subtype6" "subtype5" "subtype3" "subtype6" "subtype5"
[103] "subtype5" "subtype5" "subtype6" "subtype6" "subtype6" "subtype6"
[109] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype2"
[115] "subtype6" "subtype5" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype4" "subtype5" "subtype4" "subtype4" "subtype6" "subtype5"
[127] "subtype2" "subtype5" "subtype5" "subtype3" "subtype4" "subtype3"
[133] "subtype4" "subtype3" "subtype5" "subtype5" "subtype6" "subtype5"
[139] "subtype5" "subtype5" "subtype2" "subtype5" "subtype6" "subtype5"
[145] "subtype5" "subtype3" "subtype6" "subtype3" "subtype3" "subtype5"
[151] "subtype3" "subtype3" "subtype6" "subtype5" "subtype3" "subtype5"
[157] "subtype2" "subtype5" "subtype3" "subtype5" "subtype5" "subtype5"
[163] "subtype3" "subtype3" "subtype4" "subtype5" "subtype6" "subtype4"
[169] "subtype5" "subtype5" "subtype3" "subtype3" "subtype6" "subtype3"
[175] "subtype5" "subtype3" "subtype5" "subtype5" "subtype6" "subtype3"
[181] "subtype5" "subtype2" "subtype3" "subtype3" "subtype2"
D10V11, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       1        8       42       26       70       46 
  [1] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype6"
  [7] "subtype4" "subtype5" "subtype6" "subtype3" "subtype6" "subtype5"
 [13] "subtype6" "subtype6" "subtype5" "subtype5" "subtype5" "subtype6"
 [19] "subtype4" "subtype6" "subtype5" "subtype5" "subtype4" "subtype6"
 [25] "subtype5" "subtype5" "subtype6" "subtype6" "subtype6" "subtype5"
 [31] "subtype3" "subtype3" "subtype2" "subtype6" "subtype3" "subtype4"
 [37] "subtype5" "subtype5" "subtype3" "subtype5" "subtype4" "subtype5"
 [43] "subtype2" "subtype5" "subtype3" "subtype5" "subtype5" "subtype6"
 [49] "subtype3" "subtype6" "subtype3" "subtype3" "subtype3" "subtype4"
 [55] "subtype3" "subtype5" "subtype5" "subtype3" "subtype6" "subtype6"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype4"
 [67] "subtype4" "subtype4" "subtype6" "subtype6" "subtype3" "subtype6"
 [73] "subtype5" "subtype5" "subtype5" "subtype3" "subtype5" "subtype6"
 [79] "subtype6" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
 [85] "subtype5" "subtype6" "subtype5" "subtype6" "subtype6" "subtype4"
 [91] "subtype5" "subtype5" "subtype5" "subtype5" "subtype6" "subtype5"
 [97] "subtype5" "subtype5" "subtype6" "subtype4" "subtype5" "subtype5"
[103] "subtype5" "subtype3" "subtype6" "subtype5" "subtype5" "subtype4"
[109] "subtype6" "subtype5" "subtype4" "subtype5" "subtype5" "subtype4"
[115] "subtype4" "subtype6" "subtype5" "subtype5" "subtype4" "subtype6"
[121] "subtype6" "subtype6" "subtype6" "subtype6" "subtype4" "subtype6"
[127] "subtype5" "subtype2" "subtype6" "subtype5" "subtype6" "subtype3"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype4" "subtype6"
[139] "subtype4" "subtype6" "subtype5" "subtype2" "subtype2" "subtype3"
[145] "subtype4" "subtype3" "subtype4" "subtype3" "subtype5" "subtype5"
[151] "subtype6" "subtype5" "subtype5" "subtype5" "subtype2" "subtype5"
[157] "subtype6" "subtype5" "subtype5" "subtype3" "subtype6" "subtype3"
[163] "subtype3" "subtype5" "subtype3" "subtype3" "subtype6" "subtype5"
[169] "subtype3" "subtype5" "subtype2" "subtype5" "subtype3" "subtype5"
[175] "subtype5" "subtype5" "subtype3" "subtype3" "subtype4" "subtype5"
[181] "subtype5" "subtype3" "subtype3" "subtype6" "subtype3" "subtype5"
[187] "subtype3" "subtype6" "subtype3" "subtype5" "subtype2" "subtype3"
D10V12, continuous
> q(save="no")
