
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/6068697/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/6159665/HNSC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/6159665/HNSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/6068697/transformed.cor.cli.txt"

nPatients in clinical file=458, in cluster file=306, common to both=306
[1]  35 306
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              64              242 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              64              242 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              65              241 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              65              241 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            10            296 
  HRAS MUTATED HRAS WILD-TYPE 
            10            296 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           213             93 
  TP53 MUTATED TP53 WILD-TYPE 
           213             93 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              17              289 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              17              289 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              57              249 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              57              249 
[1] "NSD1 MUTATION ANALYSIS"
[1] 3
  NSD1 MUTATED NSD1 WILD-TYPE 
            33            273 
  NSD1 MUTATED NSD1 WILD-TYPE 
            33            273 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            69            237 
  FAT1 MUTATED FAT1 WILD-TYPE 
            69            237 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             27             279 
  CASP8 MUTATED CASP8 WILD-TYPE 
             27             279 
[1] "JUB MUTATION ANALYSIS"
[1] 3
  JUB MUTATED JUB WILD-TYPE 
           18           288 
  JUB MUTATED JUB WILD-TYPE 
           18           288 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            53            253 
  MLL2 MUTATED MLL2 WILD-TYPE 
            53            253 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             291 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             291 
[1] "ZNF750 MUTATION ANALYSIS"
[1] 3
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              13              293 
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              13              293 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             13             293 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             13             293 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           47           259 
  FLG MUTATED FLG WILD-TYPE 
           47           259 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            7           299 
  B2M MUTATED B2M WILD-TYPE 
            7           299 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             24             282 
  EP300 MUTATED EP300 WILD-TYPE 
             24             282 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             4            302 
  RHOA MUTATED RHOA WILD-TYPE 
             4            302 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             297 
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             297 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            11            295 
  CTCF MUTATED CTCF WILD-TYPE 
            11            295 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           10           296 
  RB1 MUTATED RB1 WILD-TYPE 
           10           296 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             70             236 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             70             236 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              10              296 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              10              296 
[1] "NECAB1 MUTATION ANALYSIS"
[1] 3
  NECAB1 MUTATED NECAB1 WILD-TYPE 
               6              300 
  NECAB1 MUTATED NECAB1 WILD-TYPE 
               6              300 
[1] "MAPK1 MUTATION ANALYSIS"
[1] 3
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              4             302 
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              4             302 
[1] "EPB41L3 MUTATION ANALYSIS"
[1] 3
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               16               290 
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               16               290 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            297 
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            297 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            10            296 
  CUL3 MUTATED CUL3 WILD-TYPE 
            10            296 
[1] "PRB1 MUTATION ANALYSIS"
[1] 3
  PRB1 MUTATED PRB1 WILD-TYPE 
             7            299 
  PRB1 MUTATED PRB1 WILD-TYPE 
             7            299 
[1] "TRPV4 MUTATION ANALYSIS"
[1] 3
  TRPV4 MUTATED TRPV4 WILD-TYPE 
              7             299 
  TRPV4 MUTATED TRPV4 WILD-TYPE 
              7             299 
[1] "EPDR1 MUTATION ANALYSIS"
[1] 3
  EPDR1 MUTATED EPDR1 WILD-TYPE 
              6             300 
  EPDR1 MUTATED EPDR1 WILD-TYPE 
              6             300 
[1] "SLC26A7 MUTATION ANALYSIS"
[1] 3
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
                8               298 
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
                8               298 
[1] "KCNA3 MUTATION ANALYSIS"
[1] 3
  KCNA3 MUTATED KCNA3 WILD-TYPE 
              8             298 
  KCNA3 MUTATED KCNA3 WILD-TYPE 
              8             298 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 7                299 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 7                299 
[1] "STEAP4 MUTATION ANALYSIS"
[1] 3
  STEAP4 MUTATED STEAP4 WILD-TYPE 
              10              296 
  STEAP4 MUTATED STEAP4 WILD-TYPE 
              10              296 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 306 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 306 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       27     29      6
  PIK3CA WILD-TYPE    135     84     21
D1V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             27              135
  CLUS_2             29               84
  CLUS_3              6               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        5      6     17     16      9     10      1
  PIK3CA WILD-TYPE     38     46     46     28     32     41     11
D1V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       12      9      8     10
  PIK3CA WILD-TYPE     43     43     27     56
D1V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             12               43
  CLUS_2              9               43
  CLUS_3              8               27
  CLUS_4             10               56
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        2     14     23
  PIK3CA WILD-TYPE     15     59     95
D1V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               15
  CLUS_2             14               59
  CLUS_3             23               95
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       31     13     20
  PIK3CA WILD-TYPE     91     83     66
D1V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             31               91
  CLUS_2             13               83
  CLUS_3             20               66
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       28     16     20
  PIK3CA WILD-TYPE     93     49     98
D1V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             28               93
  CLUS_2             16               49
  CLUS_3             20               98
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       17     33     14
  PIK3CA WILD-TYPE     46    103     91
D1V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             17               46
  CLUS_2             33              103
  CLUS_3             14               91
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        2     22     40
  PIK3CA WILD-TYPE     12     99    129
D1V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               12
  CLUS_2             22               99
  CLUS_3             40              129
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        8     15     23     11
  PIK3CA WILD-TYPE     27     47     84     53
D1V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               27
  CLUS_2             15               47
  CLUS_3             23               84
  CLUS_4             11               53
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        2      2      7     11     19     16
  PIK3CA WILD-TYPE      2      5     39     33     83     49
D1V10, multiclass

Clustering(2) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       39     18      8
  CDKN2A WILD-TYPE    123     95     19
D2V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             39              123
  CLUS_2             18               95
  CLUS_3              8               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKN2A MUTATED        5     17     19      1     11     11      1
  CDKN2A WILD-TYPE     38     35     44     43     30     40     11
D2V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       11      6     17     19
  CDKN2A WILD-TYPE     44     46     18     47
D2V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11               44
  CLUS_2              6               46
  CLUS_3             17               18
  CLUS_4             19               47
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        2     22     29
  CDKN2A WILD-TYPE     15     51     89
D2V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               15
  CLUS_2             22               51
  CLUS_3             29               89
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       22     19     24
  CDKN2A WILD-TYPE    100     77     62
D2V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             22              100
  CLUS_2             19               77
  CLUS_3             24               62
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       21     16     28
  CDKN2A WILD-TYPE    100     49     90
D2V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21              100
  CLUS_2             16               49
  CLUS_3             28               90
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       13     24     27
  CDKN2A WILD-TYPE     50    112     78
D2V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             13               50
  CLUS_2             24              112
  CLUS_3             27               78
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        3     32     29
  CDKN2A WILD-TYPE     11     89    140
D2V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               11
  CLUS_2             32               89
  CLUS_3             29              140
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED       10     11     24     13
  CDKN2A WILD-TYPE     25     51     83     51
D2V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             10               25
  CLUS_2             11               51
  CLUS_3             24               83
  CLUS_4             13               51
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        2      1      7     10     25     13
  CDKN2A WILD-TYPE      2      6     39     34     77     52
D2V10, multiclass

Clustering(3) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        0     10      0
  HRAS WILD-TYPE    162    103     27
D3V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            162
  CLUS_2           10            103
  CLUS_3            0             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HRAS MUTATED        1      1      0      0      6      2      0
  HRAS WILD-TYPE     42     51     63     44     35     49     12
D3V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        1      1      3      2
  HRAS WILD-TYPE     54     51     32     64
D3V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             54
  CLUS_2            1             51
  CLUS_3            3             32
  CLUS_4            2             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      4      2
  HRAS WILD-TYPE     16     69    116
D3V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             16
  CLUS_2            4             69
  CLUS_3            2            116
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      1      8
  HRAS WILD-TYPE    121     95     78
D3V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            121
  CLUS_2            1             95
  CLUS_3            8             78
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      7      2
  HRAS WILD-TYPE    120     58    116
D3V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            120
  CLUS_2            7             58
  CLUS_3            2            116
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        3      2      5
  HRAS WILD-TYPE     60    134    100
D3V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3             60
  CLUS_2            2            134
  CLUS_3            5            100
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      2      7
  HRAS WILD-TYPE     13    119    162
D3V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             13
  CLUS_2            2            119
  CLUS_3            7            162
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        2      2      5      1
  HRAS WILD-TYPE     33     60    102     63
D3V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             60
  CLUS_3            5            102
  CLUS_4            1             63
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HRAS MUTATED        0      0      2      4      3      1
  HRAS WILD-TYPE      4      7     44     40     99     64
D3V10, multiclass

Clustering(4) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      142     54     15
  TP53 WILD-TYPE     20     59     12
D4V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          142             20
  CLUS_2           54             59
  CLUS_3           15             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       35     48     54      4     26     36     10
  TP53 WILD-TYPE      8      4      9     40     15     15      2
D4V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       45     33     28     54
  TP53 WILD-TYPE     10     19      7     12
D4V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           45             10
  CLUS_2           33             19
  CLUS_3           28              7
  CLUS_4           54             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        9     57     94
  TP53 WILD-TYPE      8     16     24
D4V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            9              8
  CLUS_2           57             16
  CLUS_3           94             24
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       75     78     59
  TP53 WILD-TYPE     47     18     27
D4V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           75             47
  CLUS_2           78             18
  CLUS_3           59             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       72     42     98
  TP53 WILD-TYPE     49     23     20
D4V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           72             49
  CLUS_2           42             23
  CLUS_3           98             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       39     91     82
  TP53 WILD-TYPE     24     45     23
D4V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           39             24
  CLUS_2           91             45
  CLUS_3           82             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       11     99    102
  TP53 WILD-TYPE      3     22     67
D4V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           11              3
  CLUS_2           99             22
  CLUS_3          102             67
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       21     38     76     52
  TP53 WILD-TYPE     14     24     31     12
D4V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           21             14
  CLUS_2           38             24
  CLUS_3           76             31
  CLUS_4           52             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED        2      4     22     30     82     47
  TP53 WILD-TYPE      2      3     24     14     20     18
D4V10, multiclass

Clustering(5) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        9      7      1
  NFE2L2 WILD-TYPE    153    106     26
D5V1, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              9              153
  CLUS_2              7              106
  CLUS_3              1               26
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFE2L2 MUTATED        0      0     11      0      5      1      0
  NFE2L2 WILD-TYPE     43     52     52     44     36     50     12
D5V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        4      6      2      2
  NFE2L2 WILD-TYPE     51     46     33     64
D5V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               51
  CLUS_2              6               46
  CLUS_3              2               33
  CLUS_4              2               64
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        1      5      8
  NFE2L2 WILD-TYPE     16     68    110
D5V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              5               68
  CLUS_3              8              110
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        7      5      5
  NFE2L2 WILD-TYPE    115     91     81
D5V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              115
  CLUS_2              5               91
  CLUS_3              5               81
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        6      4      7
  NFE2L2 WILD-TYPE    115     61    111
D5V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              4               61
  CLUS_3              7              111
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        2      9      6
  NFE2L2 WILD-TYPE     61    127     99
D5V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               61
  CLUS_2              9              127
  CLUS_3              6               99
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        2      5     10
  NFE2L2 WILD-TYPE     12    116    159
D5V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               12
  CLUS_2              5              116
  CLUS_3             10              159
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        0      3      8      5
  NFE2L2 WILD-TYPE     35     59     99     59
D5V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              3               59
  CLUS_3              8               99
  CLUS_4              5               59
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L2 MUTATED        1      0      1      4      6      4
  NFE2L2 WILD-TYPE      3      7     45     40     96     61
D5V10, multiclass

Clustering(6) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       24     24      8
  NOTCH1 WILD-TYPE    138     89     19
D6V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             24              138
  CLUS_2             24               89
  CLUS_3              8               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED        3     13     10      2     12     14      3
  NOTCH1 WILD-TYPE     40     39     53     42     29     37      9
D6V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED       15      4      6     14
  NOTCH1 WILD-TYPE     40     48     29     52
D6V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             15               40
  CLUS_2              4               48
  CLUS_3              6               29
  CLUS_4             14               52
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        2     21     16
  NOTCH1 WILD-TYPE     15     52    102
D6V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              2               15
  CLUS_2             21               52
  CLUS_3             16              102
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       12     23     22
  NOTCH1 WILD-TYPE    110     73     64
D6V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             12              110
  CLUS_2             23               73
  CLUS_3             22               64
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       11     20     26
  NOTCH1 WILD-TYPE    110     45     92
D6V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             11              110
  CLUS_2             20               45
  CLUS_3             26               92
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       15     12     29
  NOTCH1 WILD-TYPE     48    124     76
D6V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             15               48
  CLUS_2             12              124
  CLUS_3             29               76
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        4     26     26
  NOTCH1 WILD-TYPE     10     95    143
D6V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4               10
  CLUS_2             26               95
  CLUS_3             26              143
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        8      4     21     15
  NOTCH1 WILD-TYPE     27     58     86     49
D6V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              8               27
  CLUS_2              4               58
  CLUS_3             21               86
  CLUS_4             15               49
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOTCH1 MUTATED        1      2      4     14     22      5
  NOTCH1 WILD-TYPE      3      5     42     30     80     60
D6V10, multiclass

Clustering(7) Variable = NSD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       24      7      2
  NSD1 WILD-TYPE    138    106     25
D7V1, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           24            138
  CLUS_2            7            106
  CLUS_3            2             25
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NSD1 MUTATED       25      1      0      3      3      1      0
  NSD1 WILD-TYPE     18     51     63     41     38     50     12
D7V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED        7      7      5      2
  NSD1 WILD-TYPE     48     45     30     64
D7V3, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            7             48
  CLUS_2            7             45
  CLUS_3            5             30
  CLUS_4            2             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        0      8     13
  NSD1 WILD-TYPE     17     65    105
D7V4, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            8             65
  CLUS_3           13            105
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       24      3      6
  NSD1 WILD-TYPE     98     93     80
D7V5, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           24             98
  CLUS_2            3             93
  CLUS_3            6             80
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED       26      2      5
  NSD1 WILD-TYPE     95     63    113
D7V6, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           26             95
  CLUS_2            2             63
  CLUS_3            5            113
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        7     20      6
  NSD1 WILD-TYPE     56    116     99
D7V7, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            7             56
  CLUS_2           20            116
  CLUS_3            6             99
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NSD1 MUTATED        2      6     25
  NSD1 WILD-TYPE     12    115    144
D7V8, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            2             12
  CLUS_2            6            115
  CLUS_3           25            144
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSD1 MUTATED        3     13     10      3
  NSD1 WILD-TYPE     32     49     97     61
D7V9, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2           13             49
  CLUS_3           10             97
  CLUS_4            3             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NSD1 MUTATED        0      0      8      4      5     12
  NSD1 WILD-TYPE      4      7     38     40     97     53
D7V10, multiclass

Clustering(8) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       38     26      4
  FAT1 WILD-TYPE    124     87     23
D8V1, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           38            124
  CLUS_2           26             87
  CLUS_3            4             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAT1 MUTATED       11     10     16      3     13     12      4
  FAT1 WILD-TYPE     32     42     47     41     28     39      8
D8V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED       12     11      7     17
  FAT1 WILD-TYPE     43     41     28     49
D8V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           12             43
  CLUS_2           11             41
  CLUS_3            7             28
  CLUS_4           17             49
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        4     16     27
  FAT1 WILD-TYPE     13     57     91
D8V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             13
  CLUS_2           16             57
  CLUS_3           27             91
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       21     27     21
  FAT1 WILD-TYPE    101     69     65
D8V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           21            101
  CLUS_2           27             69
  CLUS_3           21             65
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       22     15     32
  FAT1 WILD-TYPE     99     50     86
D8V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           22             99
  CLUS_2           15             50
  CLUS_3           32             86
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       10     27     31
  FAT1 WILD-TYPE     53    109     74
D8V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           10             53
  CLUS_2           27            109
  CLUS_3           31             74
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        4     32     32
  FAT1 WILD-TYPE     10     89    137
D8V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             10
  CLUS_2           32             89
  CLUS_3           32            137
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        8     13     27     16
  FAT1 WILD-TYPE     27     49     80     48
D8V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            8             27
  CLUS_2           13             49
  CLUS_3           27             80
  CLUS_4           16             48
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAT1 MUTATED        1      1      8     12     30     12
  FAT1 WILD-TYPE      3      6     38     32     72     53
D8V10, multiclass

Clustering(9) Variable = CASP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        2     21      3
  CASP8 WILD-TYPE    160     92     24
D9V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             2             160
  CLUS_2            21              92
  CLUS_3             3              24
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP8 MUTATED        2      2      0      0     16      6      1
  CASP8 WILD-TYPE     41     50     63     44     25     45     11
D9V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        5      1      8      8
  CASP8 WILD-TYPE     50     51     27     58
D9V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             5              50
  CLUS_2             1              51
  CLUS_3             8              27
  CLUS_4             8              58
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        1     11     10
  CASP8 WILD-TYPE     16     62    108
D9V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1              16
  CLUS_2            11              62
  CLUS_3            10             108
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        1      5     21
  CASP8 WILD-TYPE    121     91     65
D9V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1             121
  CLUS_2             5              91
  CLUS_3            21              65
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        1     18      8
  CASP8 WILD-TYPE    120     47    110
D9V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1             120
  CLUS_2            18              47
  CLUS_3             8             110
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        7      6     13
  CASP8 WILD-TYPE     56    130     92
D9V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             7              56
  CLUS_2             6             130
  CLUS_3            13              92
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        3     10     13
  CASP8 WILD-TYPE     11    111    156
D9V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             3              11
  CLUS_2            10             111
  CLUS_3            13             156
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        5      2     12      5
  CASP8 WILD-TYPE     30     60     95     59
D9V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             2              60
  CLUS_3            12              95
  CLUS_4             5              59
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP8 MUTATED        1      1      4      7     10      1
  CASP8 WILD-TYPE      3      6     42     37     92     64
D9V10, multiclass

Clustering(10) Variable = JUB MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED       13      4      1
  JUB WILD-TYPE    149    109     26
D10V1, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1          13           149
  CLUS_2           4           109
  CLUS_3           1            26
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JUB MUTATED        0      6      5      1      3      1      2
  JUB WILD-TYPE     43     46     58     43     38     50     10
D10V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED        5      2      3      2
  JUB WILD-TYPE     50     50     32     64
D10V3, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           5            50
  CLUS_2           2            50
  CLUS_3           3            32
  CLUS_4           2            64
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        1      6      5
  JUB WILD-TYPE     16     67    113
D10V4, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           1            16
  CLUS_2           6            67
  CLUS_3           5           113
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        5      4      9
  JUB WILD-TYPE    117     92     77
D10V5, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           5           117
  CLUS_2           4            92
  CLUS_3           9            77
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        5      5      8
  JUB WILD-TYPE    116     60    110
D10V6, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           5           116
  CLUS_2           5            60
  CLUS_3           8           110
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        7      8      3
  JUB WILD-TYPE     56    128    102
D10V7, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7            56
  CLUS_2           8           128
  CLUS_3           3           102
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  JUB MUTATED        0      7     11
  JUB WILD-TYPE     14    114    158
D10V8, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           0            14
  CLUS_2           7           114
  CLUS_3          11           158
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JUB MUTATED        6      3      7      2
  JUB WILD-TYPE     29     59    100     62
D10V9, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           6            29
  CLUS_2           3            59
  CLUS_3           7           100
  CLUS_4           2            62
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JUB MUTATED        0      0      4      3      7      4
  JUB WILD-TYPE      4      7     42     41     95     61
D10V10, multiclass

Clustering(11) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       35     14      4
  MLL2 WILD-TYPE    127     99     23
D11V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           35            127
  CLUS_2           14             99
  CLUS_3            4             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL2 MUTATED       11      7     17      9      4      5      0
  MLL2 WILD-TYPE     32     45     46     35     37     46     12
D11V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        7     11      8     10
  MLL2 WILD-TYPE     48     41     27     56
D11V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            7             48
  CLUS_2           11             41
  CLUS_3            8             27
  CLUS_4           10             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        3     14     19
  MLL2 WILD-TYPE     14     59     99
D11V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3             14
  CLUS_2           14             59
  CLUS_3           19             99
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       28     12     13
  MLL2 WILD-TYPE     94     84     73
D11V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           28             94
  CLUS_2           12             84
  CLUS_3           13             73
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       26     12     15
  MLL2 WILD-TYPE     95     53    103
D11V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           26             95
  CLUS_2           12             53
  CLUS_3           15            103
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       12     29     11
  MLL2 WILD-TYPE     51    107     94
D11V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           12             51
  CLUS_2           29            107
  CLUS_3           11             94
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        0     12     40
  MLL2 WILD-TYPE     14    109    129
D11V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            0             14
  CLUS_2           12            109
  CLUS_3           40            129
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        5     14     18      8
  MLL2 WILD-TYPE     30     48     89     56
D11V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            5             30
  CLUS_2           14             48
  CLUS_3           18             89
  CLUS_4            8             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED        0      1     10     10     10     14
  MLL2 WILD-TYPE      4      6     36     34     92     51
D11V10, multiclass

Clustering(12) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       10      5      0
  FBXW7 WILD-TYPE    152    108     27
D12V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            10             152
  CLUS_2             5             108
  CLUS_3             0              27
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXW7 MUTATED        3      0      5      1      3      1      2
  FBXW7 WILD-TYPE     40     52     58     43     38     50     10
D12V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        1      4      1      5
  FBXW7 WILD-TYPE     54     48     34     61
D12V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             4              48
  CLUS_3             1              34
  CLUS_4             5              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        1      1      9
  FBXW7 WILD-TYPE     16     72    109
D12V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              72
  CLUS_3             9             109
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        7      3      5
  FBXW7 WILD-TYPE    115     93     81
D12V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             7             115
  CLUS_2             3              93
  CLUS_3             5              81
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        6      3      6
  FBXW7 WILD-TYPE    115     62    112
D12V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3              62
  CLUS_3             6             112
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        4      6      5
  FBXW7 WILD-TYPE     59    130    100
D12V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              59
  CLUS_2             6             130
  CLUS_3             5             100
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        0      5     10
  FBXW7 WILD-TYPE     14    116    159
D12V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             5             116
  CLUS_3            10             159
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        1      5      4      2
  FBXW7 WILD-TYPE     34     57    103     62
D12V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             5              57
  CLUS_3             4             103
  CLUS_4             2              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        0      2      1      1      4      4
  FBXW7 WILD-TYPE      4      5     45     43     98     61
D12V10, multiclass

Clustering(13) Variable = ZNF750 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        7      5      1
  ZNF750 WILD-TYPE    155    108     26
D13V1, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              7              155
  CLUS_2              5              108
  CLUS_3              1               26
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF750 MUTATED        1      0      4      5      1      2      0
  ZNF750 WILD-TYPE     42     52     59     39     40     49     12
D13V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        2      2      0      2
  ZNF750 WILD-TYPE     53     50     35     64
D13V3, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              2               50
  CLUS_3              0               35
  CLUS_4              2               64
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        1      2      3
  ZNF750 WILD-TYPE     16     71    115
D13V4, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              2               71
  CLUS_3              3              115
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        9      3      1
  ZNF750 WILD-TYPE    113     93     85
D13V5, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              9              113
  CLUS_2              3               93
  CLUS_3              1               85
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        9      1      3
  ZNF750 WILD-TYPE    112     64    115
D13V6, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              9              112
  CLUS_2              1               64
  CLUS_3              3              115
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        3      7      3
  ZNF750 WILD-TYPE     60    129    102
D13V7, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               60
  CLUS_2              7              129
  CLUS_3              3              102
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF750 MUTATED        0      5      8
  ZNF750 WILD-TYPE     14    116    161
D13V8, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              5              116
  CLUS_3              8              161
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF750 MUTATED        0      4      4      4
  ZNF750 WILD-TYPE     35     58    103     60
D13V9, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              4               58
  CLUS_3              4              103
  CLUS_4              4               60
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF750 MUTATED        0      1      3      2      4      2
  ZNF750 WILD-TYPE      4      6     43     42     98     63
D13V10, multiclass

Clustering(14) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        4      6      2
  EPHA2 WILD-TYPE    158    107     25
D14V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4             158
  CLUS_2             6             107
  CLUS_3             2              25
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA2 MUTATED        1      3      0      1      6      0      2
  EPHA2 WILD-TYPE     42     49     63     43     35     51     10
D14V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        4      2      1      5
  EPHA2 WILD-TYPE     51     50     34     61
D14V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             2              50
  CLUS_3             1              34
  CLUS_4             5              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        1      5      6
  EPHA2 WILD-TYPE     16     68    112
D14V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             5              68
  CLUS_3             6             112
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        2      4      7
  EPHA2 WILD-TYPE    120     92     79
D14V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2             120
  CLUS_2             4              92
  CLUS_3             7              79
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        2      5      6
  EPHA2 WILD-TYPE    119     60    112
D14V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             5              60
  CLUS_3             6             112
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        4      2      6
  EPHA2 WILD-TYPE     59    134     99
D14V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              59
  CLUS_2             2             134
  CLUS_3             6              99
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        3      6      3
  EPHA2 WILD-TYPE     11    115    166
D14V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              11
  CLUS_2             6             115
  CLUS_3             3             166
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        2      0      6      1
  EPHA2 WILD-TYPE     33     62    101     63
D14V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              62
  CLUS_3             6             101
  CLUS_4             1              63
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA2 MUTATED        0      1      1      3      4      0
  EPHA2 WILD-TYPE      4      6     45     41     98     65
D14V10, multiclass

Clustering(15) Variable = FLG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       24     19      4
  FLG WILD-TYPE    138     94     23
D15V1, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          24           138
  CLUS_2          19            94
  CLUS_3           4            23
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLG MUTATED        6      4     15      7     10      4      1
  FLG WILD-TYPE     37     48     48     37     31     47     11
D15V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG MUTATED        9      9      7      7
  FLG WILD-TYPE     46     43     28     59
D15V3, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           9            46
  CLUS_2           9            43
  CLUS_3           7            28
  CLUS_4           7            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED        2     13     17
  FLG WILD-TYPE     15     60    101
D15V4, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           2            15
  CLUS_2          13            60
  CLUS_3          17           101
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       26      9     12
  FLG WILD-TYPE     96     87     74
D15V5, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          26            96
  CLUS_2           9            87
  CLUS_3          12            74
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       25     10     12
  FLG WILD-TYPE     96     55    106
D15V6, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          25            96
  CLUS_2          10            55
  CLUS_3          12           106
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       11     27      9
  FLG WILD-TYPE     52    109     96
D15V7, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          11            52
  CLUS_2          27           109
  CLUS_3           9            96
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED        2     13     32
  FLG WILD-TYPE     12    108    137
D15V8, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           2            12
  CLUS_2          13           108
  CLUS_3          32           137
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG MUTATED        3     13     16      8
  FLG WILD-TYPE     32     49     91     56
D15V9, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           3            32
  CLUS_2          13            49
  CLUS_3          16            91
  CLUS_4           8            56
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLG MUTATED        0      0      9      8     10     13
  FLG WILD-TYPE      4      7     37     36     92     52
D15V10, multiclass

Clustering(16) Variable = B2M MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        2      5      0
  B2M WILD-TYPE    160    108     27
D16V1, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2           160
  CLUS_2           5           108
  CLUS_3           0            27
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B2M MUTATED        0      0      1      4      1      1      0
  B2M WILD-TYPE     43     52     62     40     40     50     12
D16V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        1      0      0      0
  B2M WILD-TYPE     54     52     35     66
D16V3, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            1           207 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4734    TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4739    TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5356    TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5363    TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5369    TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-7065    TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7100 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7416    TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7424    TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7432    TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7438    TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IQ-7630    TCGA-IQ-7632 
"B2M WILD-TYPE" "B2M WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        0      1      0
  B2M WILD-TYPE     17     72    118
D16V4, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            1           207 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4734    TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4739    TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5356    TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5363    TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5369    TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-7065    TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7100 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7416    TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7424    TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7432    TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7438    TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IQ-7630    TCGA-IQ-7632 
"B2M WILD-TYPE" "B2M WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        4      1      1
  B2M WILD-TYPE    118     95     85
D16V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4           118
  CLUS_2           1            95
  CLUS_3           1            85
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        4      1      1
  B2M WILD-TYPE    117     64    117
D16V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4           117
  CLUS_2           1            64
  CLUS_3           1           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        0      5      2
  B2M WILD-TYPE     63    131    103
D16V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            63
  CLUS_2           5           131
  CLUS_3           2           103
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        0      2      5
  B2M WILD-TYPE     14    119    164
D16V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            14
  CLUS_2           2           119
  CLUS_3           5           164
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        0      3      3      1
  B2M WILD-TYPE     35     59    104     63
D16V9, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            35
  CLUS_2           3            59
  CLUS_3           3           104
  CLUS_4           1            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B2M MUTATED        0      0      2      2      2      1
  B2M WILD-TYPE      4      7     44     42    100     64
D16V10, multiclass

Clustering(17) Variable = EP300 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       10     12      2
  EP300 WILD-TYPE    152    101     25
D17V1, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10             152
  CLUS_2            12             101
  CLUS_3             2              25
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EP300 MUTATED        2      2      4      5      6      4      1
  EP300 WILD-TYPE     41     50     59     39     35     47     11
D17V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        3      2      4      4
  EP300 WILD-TYPE     52     50     31     62
D17V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             2              50
  CLUS_3             4              31
  CLUS_4             4              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        1      7      5
  EP300 WILD-TYPE     16     66    113
D17V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             7              66
  CLUS_3             5             113
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        5      5     14
  EP300 WILD-TYPE    117     91     72
D17V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             5             117
  CLUS_2             5              91
  CLUS_3            14              72
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        6     11      7
  EP300 WILD-TYPE    115     54    111
D17V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             6             115
  CLUS_2            11              54
  CLUS_3             7             111
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        7      8      8
  EP300 WILD-TYPE     56    128     97
D17V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7              56
  CLUS_2             8             128
  CLUS_3             8              97
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        1      8     14
  EP300 WILD-TYPE     13    113    155
D17V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             8             113
  CLUS_3            14             155
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        3      3     10      6
  EP300 WILD-TYPE     32     59     97     58
D17V9, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              59
  CLUS_3            10              97
  CLUS_4             6              58
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EP300 MUTATED        1      0      6      5      8      2
  EP300 WILD-TYPE      3      7     40     39     94     63
D17V10, multiclass

Clustering(18) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        1      1      2
  RHOA WILD-TYPE    161    112     25
D18V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1            161
  CLUS_2            1            112
  CLUS_3            2             25
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHOA MUTATED        0      3      0      0      0      1      0
  RHOA WILD-TYPE     43     49     63     44     41     50     12
D18V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        0      0      0      3
  RHOA WILD-TYPE     55     52     35     63
D18V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             55
  CLUS_2            0             52
  CLUS_3            0             35
  CLUS_4            3             63
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        0      0      3
  RHOA WILD-TYPE     17     73    115
D18V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             73
  CLUS_3            3            115
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        1      2      1
  RHOA WILD-TYPE    121     94     85
D18V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1            121
  CLUS_2            2             94
  CLUS_3            1             85
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        0      1      3
  RHOA WILD-TYPE    121     64    115
D18V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0            121
  CLUS_2            1             64
  CLUS_3            3            115
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        2      0      2
  RHOA WILD-TYPE     61    136    103
D18V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             61
  CLUS_2            0            136
  CLUS_3            2            103
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        0      3      1
  RHOA WILD-TYPE     14    118    168
D18V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             14
  CLUS_2            3            118
  CLUS_3            1            168
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        1      0      0      3
  RHOA WILD-TYPE     34     62    107     61
D18V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             34
  CLUS_2            0             62
  CLUS_3            0            107
  CLUS_4            3             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOA MUTATED        0      1      0      0      3      0
  RHOA WILD-TYPE      4      6     46     44     99     65
D18V10, multiclass

Clustering(19) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        3      5      1
  HLA-A WILD-TYPE    159    108     26
D19V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             159
  CLUS_2             5             108
  CLUS_3             1              26
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-A MUTATED        0      1      2      1      4      1      0
  HLA-A WILD-TYPE     43     51     61     43     37     50     12
D19V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      1      1      2
  HLA-A WILD-TYPE     54     51     34     64
D19V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              54
  CLUS_2             1              51
  CLUS_3             1              34
  CLUS_4             2              64
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        1      1      3
  HLA-A WILD-TYPE     16     72    115
D19V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1              72
  CLUS_3             3             115
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        3      1      5
  HLA-A WILD-TYPE    119     95     81
D19V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             119
  CLUS_2             1              95
  CLUS_3             5              81
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      4      3
  HLA-A WILD-TYPE    119     61    115
D19V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             4              61
  CLUS_3             3             115
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        3      3      3
  HLA-A WILD-TYPE     60    133    102
D19V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3              60
  CLUS_2             3             133
  CLUS_3             3             102
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      2      5
  HLA-A WILD-TYPE     12    119    164
D19V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              12
  CLUS_2             2             119
  CLUS_3             5             164
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        2      1      4      2
  HLA-A WILD-TYPE     33     61    103     62
D19V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              61
  CLUS_3             4             103
  CLUS_4             2              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-A MUTATED        0      0      4      1      3      1
  HLA-A WILD-TYPE      4      7     42     43     99     64
D19V10, multiclass

Clustering(20) Variable = CTCF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        4      7      0
  CTCF WILD-TYPE    158    106     27
D20V1, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            158
  CLUS_2            7            106
  CLUS_3            0             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTCF MUTATED        3      1      0      1      5      1      0
  CTCF WILD-TYPE     40     51     63     43     36     50     12
D20V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        2      2      0      4
  CTCF WILD-TYPE     53     50     35     62
D20V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             53
  CLUS_2            2             50
  CLUS_3            0             35
  CLUS_4            4             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        0      2      6
  CTCF WILD-TYPE     17     71    112
D20V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             71
  CLUS_3            6            112
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        4      2      5
  CTCF WILD-TYPE    118     94     81
D20V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            118
  CLUS_2            2             94
  CLUS_3            5             81
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        4      4      3
  CTCF WILD-TYPE    117     61    115
D20V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            117
  CLUS_2            4             61
  CLUS_3            3            115
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        3      3      5
  CTCF WILD-TYPE     60    133    100
D20V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3             60
  CLUS_2            3            133
  CLUS_3            5            100
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        1      4      6
  CTCF WILD-TYPE     13    117    163
D20V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             13
  CLUS_2            4            117
  CLUS_3            6            163
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        0      3      5      2
  CTCF WILD-TYPE     35     59    102     62
D20V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            0             35
  CLUS_2            3             59
  CLUS_3            5            102
  CLUS_4            2             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTCF MUTATED        0      0      2      2      3      3
  CTCF WILD-TYPE      4      7     44     42     99     62
D20V10, multiclass

Clustering(21) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        5      5      0
  RB1 WILD-TYPE    157    108     27
D21V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5           157
  CLUS_2           5           108
  CLUS_3           0            27
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED        3      0      2      3      1      1      0
  RB1 WILD-TYPE     40     52     61     41     40     50     12
D21V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      1      0      3
  RB1 WILD-TYPE     55     51     35     63
D21V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            55
  CLUS_2           1            51
  CLUS_3           0            35
  CLUS_4           3            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      0      3
  RB1 WILD-TYPE     16     73    115
D21V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            16
  CLUS_2           0            73
  CLUS_3           3           115
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        8      1      1
  RB1 WILD-TYPE    114     95     85
D21V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           8           114
  CLUS_2           1            95
  CLUS_3           1            85
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        8      0      2
  RB1 WILD-TYPE    113     65    116
D21V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           8           113
  CLUS_2           0            65
  CLUS_3           2           116
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      7      3
  RB1 WILD-TYPE     63    129    102
D21V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            63
  CLUS_2           7           129
  CLUS_3           3           102
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      4      6
  RB1 WILD-TYPE     14    117    163
D21V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            14
  CLUS_2           4           117
  CLUS_3           6           163
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      3      5      1
  RB1 WILD-TYPE     35     59    102     63
D21V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            35
  CLUS_2           3            59
  CLUS_3           5           102
  CLUS_4           1            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1 MUTATED        0      0      0      0      3      6
  RB1 WILD-TYPE      4      7     46     44     99     59
D21V10, multiclass

Clustering(22) Variable = CSMD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       48     15      7
  CSMD3 WILD-TYPE    114     98     20
D22V1, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            48             114
  CLUS_2            15              98
  CLUS_3             7              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSMD3 MUTATED       21      8     18     11      4      5      3
  CSMD3 WILD-TYPE     22     44     45     33     37     46      9
D22V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       15     18      8      7
  CSMD3 WILD-TYPE     40     34     27     59
D22V3, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            15              40
  CLUS_2            18              34
  CLUS_3             8              27
  CLUS_4             7              59
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED        6     20     22
  CSMD3 WILD-TYPE     11     53     96
D22V4, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             6              11
  CLUS_2            20              53
  CLUS_3            22              96
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       44      9     17
  CSMD3 WILD-TYPE     78     87     69
D22V5, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            44              78
  CLUS_2             9              87
  CLUS_3            17              69
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       45     11     14
  CSMD3 WILD-TYPE     76     54    104
D22V6, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            45              76
  CLUS_2            11              54
  CLUS_3            14             104
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       17     42     11
  CSMD3 WILD-TYPE     46     94     94
D22V7, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            17              46
  CLUS_2            42              94
  CLUS_3            11              94
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED        5     18     47
  CSMD3 WILD-TYPE      9    103    122
D22V8, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             5               9
  CLUS_2            18             103
  CLUS_3            47             122
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED        6     20     26      5
  CSMD3 WILD-TYPE     29     42     81     59
D22V9, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             6              29
  CLUS_2            20              42
  CLUS_3            26              81
  CLUS_4             5              59
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSMD3 MUTATED        1      0     10     10     12     24
  CSMD3 WILD-TYPE      3      7     36     34     90     41
D22V10, multiclass

Clustering(23) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        4      5      1
  TGFBR2 WILD-TYPE    158    108     26
D23V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4              158
  CLUS_2              5              108
  CLUS_3              1               26
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR2 MUTATED        3      0      0      0      4      3      0
  TGFBR2 WILD-TYPE     40     52     63     44     37     48     12
D23V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        3      1      0      4
  TGFBR2 WILD-TYPE     52     51     35     62
D23V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              1               51
  CLUS_3              0               35
  CLUS_4              4               62
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        0      3      5
  TGFBR2 WILD-TYPE     17     70    113
D23V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              3               70
  CLUS_3              5              113
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        2      3      5
  TGFBR2 WILD-TYPE    120     93     81
D23V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2              120
  CLUS_2              3               93
  CLUS_3              5               81
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        3      3      4
  TGFBR2 WILD-TYPE    118     62    114
D23V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              3               62
  CLUS_3              4              114
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        2      4      4
  TGFBR2 WILD-TYPE     61    132    101
D23V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               61
  CLUS_2              4              132
  CLUS_3              4              101
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        0      4      6
  TGFBR2 WILD-TYPE     14    117    163
D23V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              4              117
  CLUS_3              6              163
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        1      1      4      3
  TGFBR2 WILD-TYPE     34     61    103     61
D23V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               61
  CLUS_3              4              103
  CLUS_4              3               61
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TGFBR2 MUTATED        0      1      0      3      4      1
  TGFBR2 WILD-TYPE      4      6     46     41     98     64
D23V10, multiclass

Clustering(24) Variable = NECAB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NECAB1 MUTATED        2      4      0
  NECAB1 WILD-TYPE    160    109     27
D24V1, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2              160
  CLUS_2              4              109
  CLUS_3              0               27
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NECAB1 MUTATED        2      0      0      1      2      0      1
  NECAB1 WILD-TYPE     41     52     63     43     39     51     11
D24V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NECAB1 MUTATED        1      0      1      1
  NECAB1 WILD-TYPE     54     52     34     65
D24V3, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              0               52
  CLUS_3              1               34
  CLUS_4              1               65
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NECAB1 MUTATED        0      2      1
  NECAB1 WILD-TYPE     17     71    117
D24V4, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              2               71
  CLUS_3              1              117
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NECAB1 MUTATED        2      0      4
  NECAB1 WILD-TYPE    120     96     82
D24V5, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2              120
  CLUS_2              0               96
  CLUS_3              4               82
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NECAB1 MUTATED        2      4      0
  NECAB1 WILD-TYPE    119     61    118
D24V6, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              4               61
  CLUS_3              0              118
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NECAB1 MUTATED        2      3      1
  NECAB1 WILD-TYPE     61    133    104
D24V7, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2               61
  CLUS_2              3              133
  CLUS_3              1              104
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NECAB1 MUTATED        0      1      5
  NECAB1 WILD-TYPE     14    120    164
D24V8, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              0               14
  CLUS_2              1              120
  CLUS_3              5              164
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NECAB1 MUTATED        1      2      3      0
  NECAB1 WILD-TYPE     34     60    104     64
D24V9, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              2               60
  CLUS_3              3              104
  CLUS_4              0               64
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NECAB1 MUTATED        0      1      0      2      1      2
  NECAB1 WILD-TYPE      4      6     46     42    101     63
D24V10, multiclass

Clustering(25) Variable = MAPK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        1      2      1
  MAPK1 WILD-TYPE    161    111     26
D25V1, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             161
  CLUS_2             2             111
  CLUS_3             1              26
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK1 MUTATED        0      0      1      1      1      1      0
  MAPK1 WILD-TYPE     43     52     62     43     40     50     12
D25V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        1      1      1      1
  MAPK1 WILD-TYPE     54     51     34     65
D25V3, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             1              51
  CLUS_3             1              34
  CLUS_4             1              65
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        0      2      2
  MAPK1 WILD-TYPE     17     71    116
D25V4, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              71
  CLUS_3             2             116
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        1      1      2
  MAPK1 WILD-TYPE    121     95     84
D25V5, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             121
  CLUS_2             1              95
  CLUS_3             2              84
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        1      2      1
  MAPK1 WILD-TYPE    120     63    117
D25V6, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             2              63
  CLUS_3             1             117
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        1      1      2
  MAPK1 WILD-TYPE     62    135    103
D25V7, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              62
  CLUS_2             1             135
  CLUS_3             2             103
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK1 MUTATED        1      1      2
  MAPK1 WILD-TYPE     13    120    167
D25V8, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              13
  CLUS_2             1             120
  CLUS_3             2             167
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK1 MUTATED        1      0      2      1
  MAPK1 WILD-TYPE     34     62    105     63
D25V9, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              62
  CLUS_3             2             105
  CLUS_4             1              63
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAPK1 MUTATED        0      0      1      1      1      1
  MAPK1 WILD-TYPE      4      7     45     43    101     64
D25V10, multiclass

Clustering(26) Variable = EPB41L3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L3 MUTATED       11      3      2
  EPB41L3 WILD-TYPE    151    110     25
D26V1, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1              11               151
  CLUS_2               3               110
  CLUS_3               2                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPB41L3 MUTATED        6      1      6      0      1      2      0
  EPB41L3 WILD-TYPE     37     51     57     44     40     49     12
D26V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L3 MUTATED        1      3      2      4
  EPB41L3 WILD-TYPE     54     49     33     62
D26V3, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               1                54
  CLUS_2               3                49
  CLUS_3               2                33
  CLUS_4               4                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L3 MUTATED        0      1      9
  EPB41L3 WILD-TYPE     17     72    109
D26V4, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                72
  CLUS_3               9               109
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L3 MUTATED       11      2      3
  EPB41L3 WILD-TYPE    111     94     83
D26V5, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1              11               111
  CLUS_2               2                94
  CLUS_3               3                83
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L3 MUTATED       12      1      3
  EPB41L3 WILD-TYPE    109     64    115
D26V6, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1              12               109
  CLUS_2               1                64
  CLUS_3               3               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L3 MUTATED        4     10      2
  EPB41L3 WILD-TYPE     59    126    103
D26V7, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               4                59
  CLUS_2              10               126
  CLUS_3               2               103
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L3 MUTATED        0      3     13
  EPB41L3 WILD-TYPE     14    118    156
D26V8, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               0                14
  CLUS_2               3               118
  CLUS_3              13               156
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L3 MUTATED        2      6      4      2
  EPB41L3 WILD-TYPE     33     56    103     62
D26V9, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               6                56
  CLUS_3               4               103
  CLUS_4               2                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41L3 MUTATED        0      0      2      2      3      7
  EPB41L3 WILD-TYPE      4      7     44     42     99     58
D26V10, multiclass

Clustering(27) Variable = RAC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      6      0
  RAC1 WILD-TYPE    159    107     27
D27V1, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            159
  CLUS_2            6            107
  CLUS_3            0             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAC1 MUTATED        0      1      1      1      2      3      1
  RAC1 WILD-TYPE     43     51     62     43     39     48     11
D27V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        1      1      1      1
  RAC1 WILD-TYPE     54     51     34     65
D27V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             54
  CLUS_2            1             51
  CLUS_3            1             34
  CLUS_4            1             65
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        0      2      2
  RAC1 WILD-TYPE     17     71    116
D27V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             71
  CLUS_3            2            116
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      5
  RAC1 WILD-TYPE    119     95     81
D27V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            119
  CLUS_2            1             95
  CLUS_3            5             81
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      5      1
  RAC1 WILD-TYPE    118     60    117
D27V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            5             60
  CLUS_3            1            117
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      5      1
  RAC1 WILD-TYPE     60    131    104
D27V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             60
  CLUS_2            5            131
  CLUS_3            1            104
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        0      1      8
  RAC1 WILD-TYPE     14    120    161
D27V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            0             14
  CLUS_2            1            120
  CLUS_3            8            161
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        1      3      3      0
  RAC1 WILD-TYPE     34     59    104     64
D27V9, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            3             59
  CLUS_3            3            104
  CLUS_4            0             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAC1 MUTATED        0      0      4      1      1      1
  RAC1 WILD-TYPE      4      7     42     43    101     64
D27V10, multiclass

Clustering(28) Variable = CUL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        8      2      0
  CUL3 WILD-TYPE    154    111     27
D28V1, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            8            154
  CLUS_2            2            111
  CLUS_3            0             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL3 MUTATED        3      1      5      0      0      1      0
  CUL3 WILD-TYPE     40     51     58     44     41     50     12
D28V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        2      4      0      2
  CUL3 WILD-TYPE     53     48     35     64
D28V3, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             53
  CLUS_2            4             48
  CLUS_3            0             35
  CLUS_4            2             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        2      2      4
  CUL3 WILD-TYPE     15     71    114
D28V4, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            2             71
  CLUS_3            4            114
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        5      4      1
  CUL3 WILD-TYPE    117     92     85
D28V5, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            117
  CLUS_2            4             92
  CLUS_3            1             85
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        5      1      4
  CUL3 WILD-TYPE    116     64    114
D28V6, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1             64
  CLUS_3            4            114
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        2      6      2
  CUL3 WILD-TYPE     61    130    103
D28V7, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             61
  CLUS_2            6            130
  CLUS_3            2            103
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        0      6      4
  CUL3 WILD-TYPE     14    115    165
D28V8, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0             14
  CLUS_2            6            115
  CLUS_3            4            165
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        1      4      2      1
  CUL3 WILD-TYPE     34     58    105     63
D28V9, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            4             58
  CLUS_3            2            105
  CLUS_4            1             63
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUL3 MUTATED        0      0      1      0      5      2
  CUL3 WILD-TYPE      4      7     45     44     97     63
D28V10, multiclass

Clustering(29) Variable = PRB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        7      0      0
  PRB1 WILD-TYPE    155    113     27
D29V1, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            7            155
  CLUS_2            0            113
  CLUS_3            0             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRB1 MUTATED        3      0      3      0      0      1      0
  PRB1 WILD-TYPE     40     52     60     44     41     50     12
D29V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB1 MUTATED        2      1      0      0
  PRB1 WILD-TYPE     53     51     35     66
D29V3, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2             53
  CLUS_2            1             51
  CLUS_3            0             35
  CLUS_4            0             66
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        0      2      1
  PRB1 WILD-TYPE     17     71    117
D29V4, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            2             71
  CLUS_3            1            117
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        2      3      2
  PRB1 WILD-TYPE    120     93     84
D29V5, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2            120
  CLUS_2            3             93
  CLUS_3            2             84
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        3      0      4
  PRB1 WILD-TYPE    118     65    114
D29V6, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0             65
  CLUS_3            4            114
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        3      3      1
  PRB1 WILD-TYPE     60    133    104
D29V7, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3             60
  CLUS_2            3            133
  CLUS_3            1            104
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        1      3      3
  PRB1 WILD-TYPE     13    118    166
D29V8, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            1             13
  CLUS_2            3            118
  CLUS_3            3            166
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB1 MUTATED        3      3      0      0
  PRB1 WILD-TYPE     32     59    107     64
D29V9, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            3             59
  CLUS_3            0            107
  CLUS_4            0             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRB1 MUTATED        0      0      1      1      3      1
  PRB1 WILD-TYPE      4      7     45     43     99     64
D29V10, multiclass

Clustering(30) Variable = TRPV4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV4 MUTATED        5      2      0
  TRPV4 WILD-TYPE    157    111     27
D30V1, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             5             157
  CLUS_2             2             111
  CLUS_3             0              27
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPV4 MUTATED        0      2      2      1      1      1      0
  TRPV4 WILD-TYPE     43     50     61     43     40     50     12
D30V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV4 MUTATED        2      1      1      2
  TRPV4 WILD-TYPE     53     51     34     64
D30V3, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             1              51
  CLUS_3             1              34
  CLUS_4             2              64
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV4 MUTATED        0      2      4
  TRPV4 WILD-TYPE     17     71    114
D30V4, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             2              71
  CLUS_3             4             114
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV4 MUTATED        3      1      3
  TRPV4 WILD-TYPE    119     95     83
D30V5, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             3             119
  CLUS_2             1              95
  CLUS_3             3              83
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV4 MUTATED        3      3      1
  TRPV4 WILD-TYPE    118     62    117
D30V6, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             3              62
  CLUS_3             1             117
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV4 MUTATED        0      6      1
  TRPV4 WILD-TYPE     63    130    104
D30V7, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             0              63
  CLUS_2             6             130
  CLUS_3             1             104
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV4 MUTATED        0      1      6
  TRPV4 WILD-TYPE     14    120    163
D30V8, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             1             120
  CLUS_3             6             163
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV4 MUTATED        0      1      3      3
  TRPV4 WILD-TYPE     35     61    104     61
D30V9, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              61
  CLUS_3             3             104
  CLUS_4             3              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRPV4 MUTATED        0      0      0      4      1      2
  TRPV4 WILD-TYPE      4      7     46     40    101     63
D30V10, multiclass

Clustering(31) Variable = EPDR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPDR1 MUTATED        5      1      0
  EPDR1 WILD-TYPE    157    112     27
D31V1, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             5             157
  CLUS_2             1             112
  CLUS_3             0              27
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPDR1 MUTATED        0      3      2      0      0      1      0
  EPDR1 WILD-TYPE     43     49     61     44     41     50     12
D31V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPDR1 MUTATED        1      1      0      3
  EPDR1 WILD-TYPE     54     51     35     63
D31V3, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             1              51
  CLUS_3             0              35
  CLUS_4             3              63
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPDR1 MUTATED        0      1      4
  EPDR1 WILD-TYPE     17     72    114
D31V4, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1              72
  CLUS_3             4             114
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPDR1 MUTATED        3      3      0
  EPDR1 WILD-TYPE    119     93     86
D31V5, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             3             119
  CLUS_2             3              93
  CLUS_3             0              86
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPDR1 MUTATED        3      0      3
  EPDR1 WILD-TYPE    118     65    115
D31V6, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0              65
  CLUS_3             3             115
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPDR1 MUTATED        1      3      2
  EPDR1 WILD-TYPE     62    133    103
D31V7, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             1              62
  CLUS_2             3             133
  CLUS_3             2             103
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPDR1 MUTATED        0      3      3
  EPDR1 WILD-TYPE     14    118    166
D31V8, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             3             118
  CLUS_3             3             166
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPDR1 MUTATED        2      2      0      2
  EPDR1 WILD-TYPE     33     60    107     62
D31V9, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              60
  CLUS_3             0             107
  CLUS_4             2              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPDR1 MUTATED        0      0      0      1      2      3
  EPDR1 WILD-TYPE      4      7     46     43    100     62
D31V10, multiclass

Clustering(32) Variable = SLC26A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        5      2      1
  SLC26A7 WILD-TYPE    157    111     26
D32V1, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               5               157
  CLUS_2               2               111
  CLUS_3               1                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC26A7 MUTATED        1      0      3      0      2      1      1
  SLC26A7 WILD-TYPE     42     52     60     44     39     50     11
D32V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        1      2      1      0
  SLC26A7 WILD-TYPE     54     50     34     66
D32V3, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                54
  CLUS_2               2                50
  CLUS_3               1                34
  CLUS_4               0                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        0      3      1
  SLC26A7 WILD-TYPE     17     70    117
D32V4, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               3                70
  CLUS_3               1               117
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        2      1      5
  SLC26A7 WILD-TYPE    120     95     81
D32V5, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2               120
  CLUS_2               1                95
  CLUS_3               5                81
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        3      4      1
  SLC26A7 WILD-TYPE    118     61    117
D32V6, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               4                61
  CLUS_3               1               117
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        3      3      2
  SLC26A7 WILD-TYPE     60    133    103
D32V7, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               3                60
  CLUS_2               3               133
  CLUS_3               2               103
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        0      2      6
  SLC26A7 WILD-TYPE     14    119    163
D32V8, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               0                14
  CLUS_2               2               119
  CLUS_3               6               163
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        2      2      3      0
  SLC26A7 WILD-TYPE     33     60    104     64
D32V9, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                60
  CLUS_3               3               104
  CLUS_4               0                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC26A7 MUTATED        0      0      1      3      2      1
  SLC26A7 WILD-TYPE      4      7     45     41    100     64
D32V10, multiclass

Clustering(33) Variable = KCNA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        4      4      0
  KCNA3 WILD-TYPE    158    109     27
D33V1, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             4             158
  CLUS_2             4             109
  CLUS_3             0              27
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNA3 MUTATED        2      1      2      0      1      2      0
  KCNA3 WILD-TYPE     41     51     61     44     40     49     12
D33V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        4      1      0      0
  KCNA3 WILD-TYPE     51     51     35     66
D33V3, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             1              51
  CLUS_3             0              35
  CLUS_4             0              66
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        0      3      2
  KCNA3 WILD-TYPE     17     70    116
D33V4, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             3              70
  CLUS_3             2             116
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        4      1      3
  KCNA3 WILD-TYPE    118     95     83
D33V5, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             4             118
  CLUS_2             1              95
  CLUS_3             3              83
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        4      3      1
  KCNA3 WILD-TYPE    117     62    117
D33V6, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3              62
  CLUS_3             1             117
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        2      4      2
  KCNA3 WILD-TYPE     61    132    103
D33V7, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              61
  CLUS_2             4             132
  CLUS_3             2             103
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        0      2      6
  KCNA3 WILD-TYPE     14    119    163
D33V8, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             0              14
  CLUS_2             2             119
  CLUS_3             6             163
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        0      3      2      1
  KCNA3 WILD-TYPE     35     59    105     63
D33V9, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              59
  CLUS_3             2             105
  CLUS_4             1              63
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNA3 MUTATED        0      0      1      1      0      4
  KCNA3 WILD-TYPE      4      7     45     43    102     61
D33V10, multiclass

Clustering(34) Variable = HIST1H1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        3      4      0
  HIST1H1B WILD-TYPE    159    109     27
D34V1, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                159
  CLUS_2                4                109
  CLUS_3                0                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1B MUTATED        1      0      2      0      3      1      0
  HIST1H1B WILD-TYPE     42     52     61     44     38     50     12
D34V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      2      1      2
  HIST1H1B WILD-TYPE     54     50     34     64
D34V3, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 54
  CLUS_2                2                 50
  CLUS_3                1                 34
  CLUS_4                2                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        0      1      5
  HIST1H1B WILD-TYPE     17     72    113
D34V4, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                0                 17
  CLUS_2                1                 72
  CLUS_3                5                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        2      2      3
  HIST1H1B WILD-TYPE    120     94     83
D34V5, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                120
  CLUS_2                2                 94
  CLUS_3                3                 83
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        2      3      2
  HIST1H1B WILD-TYPE    119     62    116
D34V6, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                119
  CLUS_2                3                 62
  CLUS_3                2                116
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        2      4      1
  HIST1H1B WILD-TYPE     61    132    104
D34V7, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 61
  CLUS_2                4                132
  CLUS_3                1                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        2      1      4
  HIST1H1B WILD-TYPE     12    120    165
D34V8, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                120
  CLUS_3                4                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      1      2      3
  HIST1H1B WILD-TYPE     34     61    105     61
D34V9, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                1                 61
  CLUS_3                2                105
  CLUS_4                3                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1B MUTATED        1      0      1      2      1      2
  HIST1H1B WILD-TYPE      3      7     45     42    101     63
D34V10, multiclass

Clustering(35) Variable = STEAP4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP4 MUTATED        8      1      1
  STEAP4 WILD-TYPE    154    112     26
D35V1, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              8              154
  CLUS_2              1              112
  CLUS_3              1               26
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STEAP4 MUTATED        3      1      3      1      0      2      0
  STEAP4 WILD-TYPE     40     51     60     43     41     49     12
D35V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP4 MUTATED        1      4      0      1
  STEAP4 WILD-TYPE     54     48     35     65
D35V3, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              4               48
  CLUS_3              0               35
  CLUS_4              1               65
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP4 MUTATED        2      1      3
  STEAP4 WILD-TYPE     15     72    115
D35V4, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1               72
  CLUS_3              3              115
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP4 MUTATED        6      4      0
  STEAP4 WILD-TYPE    116     92     86
D35V5, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              6              116
  CLUS_2              4               92
  CLUS_3              0               86
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP4 MUTATED        6      0      4
  STEAP4 WILD-TYPE    115     65    114
D35V6, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              0               65
  CLUS_3              4              114
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP4 MUTATED        0      6      4
  STEAP4 WILD-TYPE     63    130    101
D35V7, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0               63
  CLUS_2              6              130
  CLUS_3              4              101
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP4 MUTATED        1      4      5
  STEAP4 WILD-TYPE     13    117    164
D35V8, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              1               13
  CLUS_2              4              117
  CLUS_3              5              164
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP4 MUTATED        0      3      5      2
  STEAP4 WILD-TYPE     35     59    102     62
D35V9, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              3               59
  CLUS_3              5              102
  CLUS_4              2               62
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STEAP4 MUTATED        0      0      1      0      4      5
  STEAP4 WILD-TYPE      4      7     45     44     98     60
D35V10, multiclass
> q(save="no")
