
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/6159680/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/6159637/KICH-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KICH-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KICH-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/6159637/KICH-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/6159680/transformed.cor.cli.txt"

nPatients in clinical file=66, in cluster file=66, common to both=66
[1] "Reduce the number of clustering variables from 80 to 61."
[1] 61 66
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                8                58 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                8                58 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                8                58 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                8                58 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24                42 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24                42 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               24                42 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               24                42 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                8                58 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                8                58 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                58 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                58 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               24                42 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               24                42 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               24                42 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               24                42 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               17                49 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               17                49 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               18                48 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               18                48 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               10                56 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               10                56 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               10                56 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               10                56 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 4                 62 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 4                 62 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                15                 51 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                15                 51 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                 51 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                 51 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                19                 47 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                19                 47 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                20                 46 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                20                 46 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 45 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 45 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                21                 45 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                21                 45 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                 45 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                 45 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                 45 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                 45 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                17                 49 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                17                 49 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                16                 50 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                16                 50 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 47 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 47 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                 49 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                 49 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                20                 46 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                20                 46 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                21                 45 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                21                 45 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 4                 62 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 4                 62 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                19                 47 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                19                 47 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                6                60 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                6                60 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               53                13 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               53                13 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               52                14 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               52                14 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               46                20 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               46                20 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               46                20 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               46                20 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                9                57 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                9                57 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8                58 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8                58 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10                56 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10                56 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                56 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                56 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51                15 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51                15 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               51                15 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               51                15 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                9                57 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                9                57 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8                58 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8                58 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               10                56 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               10                56 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               10                56 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               10                56 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                 18 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                 18 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                49                 17 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                49                 17 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                 59 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                 59 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 7                 59 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 7                 59 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                 23 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                 23 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 62 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 62 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 61 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 61 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                50                 16 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                50                 16 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                50                 16 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                50                 16 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 58 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 58 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                10                 56 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                10                 56 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 63 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 63 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 62 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 62 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 63 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 63 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                35                 31 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                35                 31 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                 58 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                 58 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               39                27 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               39                27 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 66 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 66 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        0      8      0
  3P GAIN WILD-TYPE      5     39     14
D1V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        1      6      1
  3P GAIN WILD-TYPE     17     29     12
D1V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               6                29
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        3      2      2      1
  3P GAIN WILD-TYPE     16     20     13      9
D1V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               2                20
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        2      1      1      0      4
  3P GAIN WILD-TYPE      8      9     16      6     19
D1V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        4      2      2
  3P GAIN WILD-TYPE     16     22     20
D1V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               2                22
  CLUS_3               2                20
D1V6, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    2  6
  3P GAIN WILD-TYPE  7 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      2    6
  3P GAIN WILD-TYPE    7   51
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               6                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        0      0      5      0      3
  3P GAIN WILD-TYPE     10     16     11     10     11
D1V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        2      0      3      3
  3P GAIN WILD-TYPE     10      8     22     18
D1V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2               0                 8
  CLUS_3               3                22
  CLUS_4               3                18

Clustering(2) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        0      8      0
  3Q GAIN WILD-TYPE      5     39     14
D2V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        1      6      1
  3Q GAIN WILD-TYPE     17     29     12
D2V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               6                29
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        3      2      2      1
  3Q GAIN WILD-TYPE     16     20     13      9
D2V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               2                20
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        2      1      1      0      4
  3Q GAIN WILD-TYPE      8      9     16      6     19
D2V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      2      2
  3Q GAIN WILD-TYPE     16     22     20
D2V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               2                22
  CLUS_3               2                20
D2V6, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED    2  6
  3Q GAIN WILD-TYPE  7 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      2    6
  3Q GAIN WILD-TYPE    7   51
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               6                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        0      0      5      0      3
  3Q GAIN WILD-TYPE     10     16     11     10     11
D2V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        2      0      3      3
  3Q GAIN WILD-TYPE     10      8     22     18
D2V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2               0                 8
  CLUS_3               3                22
  CLUS_4               3                18

Clustering(3) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0     16      8
  4P GAIN WILD-TYPE      5     31      6
D3V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              16                31
  CLUS_3               8                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        6     13      5
  4P GAIN WILD-TYPE     12     22      8
D3V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        4     17      2      1
  4P GAIN WILD-TYPE     15      5     13      9
D3V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              17                 5
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        1      2     14      2      5
  4P GAIN WILD-TYPE      9      8      3      4     18
D3V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        6      9      9
  4P GAIN WILD-TYPE     14     15     13
D3V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               9                15
  CLUS_3               9                13
D3V6, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    1 23
  4P GAIN WILD-TYPE  8 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   23
  4P GAIN WILD-TYPE    8   34
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                 8
  CLUS_2              23                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        3      8      6      3      4
  4P GAIN WILD-TYPE      7      8     10      7     10
D3V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2      6     11      5
  4P GAIN WILD-TYPE     10      2     14     16
D3V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2               6                 2
  CLUS_3              11                14
  CLUS_4               5                16

Clustering(4) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0     16      8
  4Q GAIN WILD-TYPE      5     31      6
D4V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              16                31
  CLUS_3               8                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        6     13      5
  4Q GAIN WILD-TYPE     12     22      8
D4V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        4     17      2      1
  4Q GAIN WILD-TYPE     15      5     13      9
D4V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              17                 5
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        1      2     14      2      5
  4Q GAIN WILD-TYPE      9      8      3      4     18
D4V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        6      9      9
  4Q GAIN WILD-TYPE     14     15     13
D4V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               9                15
  CLUS_3               9                13
D4V6, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    1 23
  4Q GAIN WILD-TYPE  8 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1   23
  4Q GAIN WILD-TYPE    8   34
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                 8
  CLUS_2              23                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        3      8      6      3      4
  4Q GAIN WILD-TYPE      7      8     10      7     10
D4V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        2      6     11      5
  4Q GAIN WILD-TYPE     10      2     14     16
D4V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2               6                 2
  CLUS_3              11                14
  CLUS_4               5                16

Clustering(5) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        0      5      3
  5P GAIN WILD-TYPE      5     42     11
D5V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                42
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      5      2
  5P GAIN WILD-TYPE     17     30     11
D5V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               5                30
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        1      2      3      2
  5P GAIN WILD-TYPE     18     20     12      8
D5V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                20
  CLUS_3               3                12
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        2      2      2      1      1
  5P GAIN WILD-TYPE      8      8     15      5     22
D5V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        4      3      1
  5P GAIN WILD-TYPE     16     21     21
D5V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               1                21
D5V6, binary
                   cls
clus                 0  1
  5P GAIN MUTATED    3  5
  5P GAIN WILD-TYPE  6 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      3    5
  5P GAIN WILD-TYPE    6   52
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               5                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        1      2      2      0      3
  5P GAIN WILD-TYPE      9     14     14     10     11
D5V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        3      2      2      1
  5P GAIN WILD-TYPE      9      6     23     20
D5V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               2                 6
  CLUS_3               2                23
  CLUS_4               1                20

Clustering(6) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      5      3
  5Q GAIN WILD-TYPE      5     42     11
D6V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                42
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      5      2
  5Q GAIN WILD-TYPE     17     30     11
D6V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               5                30
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        1      2      3      2
  5Q GAIN WILD-TYPE     18     20     12      8
D6V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                20
  CLUS_3               3                12
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        2      2      2      1      1
  5Q GAIN WILD-TYPE      8      8     15      5     22
D6V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        4      3      1
  5Q GAIN WILD-TYPE     16     21     21
D6V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               1                21
D6V6, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED    3  5
  5Q GAIN WILD-TYPE  6 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3    5
  5Q GAIN WILD-TYPE    6   52
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               5                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        1      2      2      0      3
  5Q GAIN WILD-TYPE      9     14     14     10     11
D6V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        3      2      2      1
  5Q GAIN WILD-TYPE      9      6     23     20
D6V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               2                 6
  CLUS_3               2                23
  CLUS_4               1                20

Clustering(7) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        0     17      7
  7P GAIN WILD-TYPE      5     30      7
D7V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              17                30
  CLUS_3               7                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        6     13      5
  7P GAIN WILD-TYPE     12     22      8
D7V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        4     14      4      2
  7P GAIN WILD-TYPE     15      8     11      8
D7V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              14                 8
  CLUS_3               4                11
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        3      2     12      2      5
  7P GAIN WILD-TYPE      7      8      5      4     18
D7V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        7      8      9
  7P GAIN WILD-TYPE     13     16     13
D7V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               7                13
  CLUS_2               8                16
  CLUS_3               9                13
D7V6, binary
                   cls
clus                 0  1
  7P GAIN MUTATED    3 21
  7P GAIN WILD-TYPE  6 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      3   21
  7P GAIN WILD-TYPE    6   36
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2              21                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        2      7      6      3      6
  7P GAIN WILD-TYPE      8      9     10      7      8
D7V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        4      4     11      5
  7P GAIN WILD-TYPE      8      4     14     16
D7V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               4                 4
  CLUS_3              11                14
  CLUS_4               5                16

Clustering(8) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        0     17      7
  7Q GAIN WILD-TYPE      5     30      7
D8V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              17                30
  CLUS_3               7                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        6     13      5
  7Q GAIN WILD-TYPE     12     22      8
D8V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        4     14      4      2
  7Q GAIN WILD-TYPE     15      8     11      8
D8V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              14                 8
  CLUS_3               4                11
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        3      2     12      2      5
  7Q GAIN WILD-TYPE      7      8      5      4     18
D8V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        7      8      9
  7Q GAIN WILD-TYPE     13     16     13
D8V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                13
  CLUS_2               8                16
  CLUS_3               9                13
D8V6, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED    3 21
  7Q GAIN WILD-TYPE  6 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      3   21
  7Q GAIN WILD-TYPE    6   36
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2              21                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        2      7      6      3      6
  7Q GAIN WILD-TYPE      8      9     10      7      8
D8V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        4      4     11      5
  7Q GAIN WILD-TYPE      8      4     14     16
D8V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               4                 4
  CLUS_3              11                14
  CLUS_4               5                16

Clustering(9) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        0     14      3
  8P GAIN WILD-TYPE      5     33     11
D9V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              14                33
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      9      5
  8P GAIN WILD-TYPE     15     26      8
D9V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               9                26
  CLUS_3               5                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        2     12      2      1
  8P GAIN WILD-TYPE     17     10     13      9
D9V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              12                10
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        2      2     10      0      3
  8P GAIN WILD-TYPE      8      8      7      6     20
D9V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6      4      7
  8P GAIN WILD-TYPE     14     20     15
D9V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               4                20
  CLUS_3               7                15
D9V6, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    2 15
  8P GAIN WILD-TYPE  7 42
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      2   15
  8P GAIN WILD-TYPE    7   42
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2              15                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        1      4      4      3      5
  8P GAIN WILD-TYPE      9     12     12      7      9
D9V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        3      3      9      2
  8P GAIN WILD-TYPE      9      5     16     19
D9V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               3                 5
  CLUS_3               9                16
  CLUS_4               2                19

Clustering(10) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        0     15      3
  8Q GAIN WILD-TYPE      5     32     11
D10V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              15                32
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        3     10      5
  8Q GAIN WILD-TYPE     15     25      8
D10V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2              10                25
  CLUS_3               5                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        2     13      2      1
  8Q GAIN WILD-TYPE     17      9     13      9
D10V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              13                 9
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        2      2     11      0      3
  8Q GAIN WILD-TYPE      8      8      6      6     20
D10V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        6      5      7
  8Q GAIN WILD-TYPE     14     19     15
D10V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               5                19
  CLUS_3               7                15
D10V6, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    2 16
  8Q GAIN WILD-TYPE  7 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      2   16
  8Q GAIN WILD-TYPE    7   41
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2              16                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        2      4      4      3      5
  8Q GAIN WILD-TYPE      8     12     12      7      9
D10V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        3      4      9      2
  8Q GAIN WILD-TYPE      9      4     16     19
D10V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               4                 4
  CLUS_3               9                16
  CLUS_4               2                19

Clustering(11) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      8      2
  9P GAIN WILD-TYPE      5     39     12
D11V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      5      2
  9P GAIN WILD-TYPE     15     30     11
D11V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        4      4      1      1
  9P GAIN WILD-TYPE     15     18     14      9
D11V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2               4                18
  CLUS_3               1                14
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        1      1      4      0      4
  9P GAIN WILD-TYPE      9      9     13      6     19
D11V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4      3      3
  9P GAIN WILD-TYPE     16     21     19
D11V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               3                19
D11V6, binary
                   cls
clus                 0  1
  9P GAIN MUTATED    2  8
  9P GAIN WILD-TYPE  7 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      2    8
  9P GAIN WILD-TYPE    7   49
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               8                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        0      1      4      1      4
  9P GAIN WILD-TYPE     10     15     12      9     10
D11V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      0      3      4
  9P GAIN WILD-TYPE      9      8     22     17
D11V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               0                 8
  CLUS_3               3                22
  CLUS_4               4                17

Clustering(12) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        0      8      2
  9Q GAIN WILD-TYPE      5     39     12
D12V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        3      5      2
  9Q GAIN WILD-TYPE     15     30     11
D12V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        4      4      1      1
  9Q GAIN WILD-TYPE     15     18     14      9
D12V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2               4                18
  CLUS_3               1                14
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        1      1      4      0      4
  9Q GAIN WILD-TYPE      9      9     13      6     19
D12V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        4      3      3
  9Q GAIN WILD-TYPE     16     21     19
D12V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               3                19
D12V6, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    2  8
  9Q GAIN WILD-TYPE  7 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      2    8
  9Q GAIN WILD-TYPE    7   49
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               8                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        0      1      4      1      4
  9Q GAIN WILD-TYPE     10     15     12      9     10
D12V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        3      0      3      4
  9Q GAIN WILD-TYPE      9      8     22     17
D12V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               0                 8
  CLUS_3               3                22
  CLUS_4               4                17

Clustering(13) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      2      2
  10P GAIN WILD-TYPE      5     45     12
D13V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 45
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      2      2
  10P GAIN WILD-TYPE     18     33     11
D13V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                 33
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        0      2      1      1
  10P GAIN WILD-TYPE     19     20     14      9
D13V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 20
  CLUS_3                1                 14
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        0      1      2      1      0
  10P GAIN WILD-TYPE     10      9     15      5     23
D13V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      2      1
  10P GAIN WILD-TYPE     19     22     21
D13V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 22
  CLUS_3                1                 21
D13V6, binary
                    cls
clus                  0  1
  10P GAIN MUTATED    1  3
  10P GAIN WILD-TYPE  8 54
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1    3
  10P GAIN WILD-TYPE    8   54
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                3                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        0      2      0      1      1
  10P GAIN WILD-TYPE     10     14     16      9     13
D13V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      2      1      0
  10P GAIN WILD-TYPE     11      6     24     21
D13V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                2                  6
  CLUS_3                1                 24
  CLUS_4                0                 21

Clustering(14) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0     10      5
  11P GAIN WILD-TYPE      5     37      9
D14V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               10                 37
  CLUS_3                5                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      7      4
  11P GAIN WILD-TYPE     14     28      9
D14V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                7                 28
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1     13      1      0
  11P GAIN WILD-TYPE     18      9     14     10
D14V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               13                  9
  CLUS_3                1                 14
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        1      1     12      0      1
  11P GAIN WILD-TYPE      9      9      5      6     22
D14V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      5      6
  11P GAIN WILD-TYPE     16     19     16
D14V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                5                 19
  CLUS_3                6                 16
D14V6, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    0 15
  11P GAIN WILD-TYPE  9 42
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      0   15
  11P GAIN WILD-TYPE    9   42
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                  9
  CLUS_2               15                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        2      5      2      3      3
  11P GAIN WILD-TYPE      8     11     14      7     11
D14V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1      3      9      2
  11P GAIN WILD-TYPE     11      5     16     19
D14V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                3                  5
  CLUS_3                9                 16
  CLUS_4                2                 19

Clustering(15) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0     10      5
  11Q GAIN WILD-TYPE      5     37      9
D15V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               10                 37
  CLUS_3                5                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        4      7      4
  11Q GAIN WILD-TYPE     14     28      9
D15V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                7                 28
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        1     14      0      0
  11Q GAIN WILD-TYPE     18      8     15     10
D15V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               14                  8
  CLUS_3                0                 15
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        0      1     13      0      1
  11Q GAIN WILD-TYPE     10      9      4      6     22
D15V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      6      6
  11Q GAIN WILD-TYPE     17     18     16
D15V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                6                 18
  CLUS_3                6                 16
D15V6, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    0 15
  11Q GAIN WILD-TYPE  9 42
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      0   15
  11Q GAIN WILD-TYPE    9   42
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                  9
  CLUS_2               15                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        3      5      1      3      3
  11Q GAIN WILD-TYPE      7     11     15      7     11
D15V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        1      4      8      2
  11Q GAIN WILD-TYPE     11      4     17     19
D15V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                4                  4
  CLUS_3                8                 17
  CLUS_4                2                 19

Clustering(16) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        0     15      4
  12P GAIN WILD-TYPE      5     32     10
D16V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        4     11      4
  12P GAIN WILD-TYPE     14     24      9
D16V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3     11      3      2
  12P GAIN WILD-TYPE     16     11     12      8
D16V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               11                 11
  CLUS_3                3                 12
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        2      2      9      2      4
  12P GAIN WILD-TYPE      8      8      8      4     19
D16V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        6      7      6
  12P GAIN WILD-TYPE     14     17     16
D16V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                7                 17
  CLUS_3                6                 16
D16V6, binary
                    cls
clus                  0  1
  12P GAIN MUTATED    3 16
  12P GAIN WILD-TYPE  6 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      3   16
  12P GAIN WILD-TYPE    6   41
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               16                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        2      6      5      2      4
  12P GAIN WILD-TYPE      8     10     11      8     10
D16V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3      5      8      3
  12P GAIN WILD-TYPE      9      3     17     18
D16V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                5                  3
  CLUS_3                8                 17
  CLUS_4                3                 18

Clustering(17) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        0     15      5
  12Q GAIN WILD-TYPE      5     32      9
D17V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                5                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        4     11      5
  12Q GAIN WILD-TYPE     14     24      8
D17V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                5                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        4     11      3      2
  12Q GAIN WILD-TYPE     15     11     12      8
D17V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 11
  CLUS_3                3                 12
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        2      2     10      2      4
  12Q GAIN WILD-TYPE      8      8      7      4     19
D17V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        6      8      6
  12Q GAIN WILD-TYPE     14     16     16
D17V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                8                 16
  CLUS_3                6                 16
D17V6, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED    3 17
  12Q GAIN WILD-TYPE  6 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      3   17
  12Q GAIN WILD-TYPE    6   40
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               17                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        2      6      5      3      4
  12Q GAIN WILD-TYPE      8     10     11      7     10
D17V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        3      5      8      4
  12Q GAIN WILD-TYPE      9      3     17     17
D17V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                5                  3
  CLUS_3                8                 17
  CLUS_4                4                 17

Clustering(18) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0     14      7
  14Q GAIN WILD-TYPE      5     33      7
D18V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        6     12      3
  14Q GAIN WILD-TYPE     12     23     10
D18V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               12                 23
  CLUS_3                3                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        4     14      3      0
  14Q GAIN WILD-TYPE     15      8     12     10
D18V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               14                  8
  CLUS_3                3                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        2      1     12      1      5
  14Q GAIN WILD-TYPE      8      9      5      5     18
D18V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        4      9      8
  14Q GAIN WILD-TYPE     16     15     14
D18V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                9                 15
  CLUS_3                8                 14
D18V6, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    1 20
  14Q GAIN WILD-TYPE  8 37
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      1   20
  14Q GAIN WILD-TYPE    8   37
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2               20                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        3      6      6      3      3
  14Q GAIN WILD-TYPE      7     10     10      7     11
D18V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        1      5     10      5
  14Q GAIN WILD-TYPE     11      3     15     16
D18V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                  3
  CLUS_3               10                 15
  CLUS_4                5                 16

Clustering(19) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0     14      7
  15Q GAIN WILD-TYPE      5     33      7
D19V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        6     12      3
  15Q GAIN WILD-TYPE     12     23     10
D19V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               12                 23
  CLUS_3                3                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        3     13      5      0
  15Q GAIN WILD-TYPE     16      9     10     10
D19V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               13                  9
  CLUS_3                5                 10
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        4      1     11      1      4
  15Q GAIN WILD-TYPE      6      9      6      5     19
D19V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        5      8      8
  15Q GAIN WILD-TYPE     15     16     14
D19V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                8                 16
  CLUS_3                8                 14
D19V6, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED    1 20
  15Q GAIN WILD-TYPE  8 37
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   20
  15Q GAIN WILD-TYPE    8   37
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2               20                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        3      5      5      3      5
  15Q GAIN WILD-TYPE      7     11     11      7      9
D19V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        2      3     11      5
  15Q GAIN WILD-TYPE     10      5     14     16
D19V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                3                  5
  CLUS_3               11                 14
  CLUS_4                5                 16

Clustering(20) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0     14      7
  16P GAIN WILD-TYPE      5     33      7
D20V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        6     11      4
  16P GAIN WILD-TYPE     12     24      9
D20V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               11                 24
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        4     16      1      0
  16P GAIN WILD-TYPE     15      6     14     10
D20V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               16                  6
  CLUS_3                1                 14
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        0      1     14      1      5
  16P GAIN WILD-TYPE     10      9      3      5     18
D20V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        3      9      9
  16P GAIN WILD-TYPE     17     15     13
D20V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                9                 15
  CLUS_3                9                 13
D20V6, binary
                    cls
clus                  0  1
  16P GAIN MUTATED    0 21
  16P GAIN WILD-TYPE  9 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      0   21
  16P GAIN WILD-TYPE    9   36
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                  9
  CLUS_2               21                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        3      7      5      3      3
  16P GAIN WILD-TYPE      7      9     11      7     11
D20V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        1      5     10      5
  16P GAIN WILD-TYPE     11      3     15     16
D20V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                  3
  CLUS_3               10                 15
  CLUS_4                5                 16

Clustering(21) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0     14      7
  16Q GAIN WILD-TYPE      5     33      7
D21V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        6     11      4
  16Q GAIN WILD-TYPE     12     24      9
D21V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               11                 24
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        4     16      1      0
  16Q GAIN WILD-TYPE     15      6     14     10
D21V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               16                  6
  CLUS_3                1                 14
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        0      1     14      1      5
  16Q GAIN WILD-TYPE     10      9      3      5     18
D21V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        3      9      9
  16Q GAIN WILD-TYPE     17     15     13
D21V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                9                 15
  CLUS_3                9                 13
D21V6, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED    0 21
  16Q GAIN WILD-TYPE  9 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      0   21
  16Q GAIN WILD-TYPE    9   36
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                  9
  CLUS_2               21                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        3      7      5      3      3
  16Q GAIN WILD-TYPE      7      9     11      7     11
D21V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        1      5     10      5
  16Q GAIN WILD-TYPE     11      3     15     16
D21V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                  3
  CLUS_3               10                 15
  CLUS_4                5                 16

Clustering(22) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0     13      4
  18P GAIN WILD-TYPE      5     34     10
D22V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               13                 34
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        5      8      4
  18P GAIN WILD-TYPE     13     27      9
D22V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                8                 27
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1     12      2      2
  18P GAIN WILD-TYPE     18     10     13      8
D22V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               12                 10
  CLUS_3                2                 13
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      3     10      1      2
  18P GAIN WILD-TYPE      9      7      7      5     21
D22V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        5      7      5
  18P GAIN WILD-TYPE     15     17     17
D22V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                7                 17
  CLUS_3                5                 17
D22V6, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    3 14
  18P GAIN WILD-TYPE  6 43
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      3   14
  18P GAIN WILD-TYPE    6   43
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               14                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        3      6      2      1      5
  18P GAIN WILD-TYPE      7     10     14      9      9
D22V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        4      5      6      2
  18P GAIN WILD-TYPE      8      3     19     19
D22V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                5                  3
  CLUS_3                6                 19
  CLUS_4                2                 19

Clustering(23) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0     12      4
  18Q GAIN WILD-TYPE      5     35     10
D23V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               12                 35
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        5      8      3
  18Q GAIN WILD-TYPE     13     27     10
D23V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                8                 27
  CLUS_3                3                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1     12      2      1
  18Q GAIN WILD-TYPE     18     10     13      9
D23V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               12                 10
  CLUS_3                2                 13
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        1      2     10      1      2
  18Q GAIN WILD-TYPE      9      8      7      5     21
D23V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        4      7      5
  18Q GAIN WILD-TYPE     16     17     17
D23V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                7                 17
  CLUS_3                5                 17
D23V6, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    2 14
  18Q GAIN WILD-TYPE  7 43
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   14
  18Q GAIN WILD-TYPE    7   43
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2               14                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        3      6      2      1      4
  18Q GAIN WILD-TYPE      7     10     14      9     10
D23V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        3      5      6      2
  18Q GAIN WILD-TYPE      9      3     19     19
D23V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                5                  3
  CLUS_3                6                 19
  CLUS_4                2                 19

Clustering(24) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0     15      4
  19P GAIN WILD-TYPE      5     32     10
D24V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3     13      3
  19P GAIN WILD-TYPE     15     22     10
D24V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2               13                 22
  CLUS_3                3                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        2     11      5      1
  19P GAIN WILD-TYPE     17     11     10      9
D24V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2               11                 11
  CLUS_3                5                 10
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        4      1     10      1      3
  19P GAIN WILD-TYPE      6      9      7      5     20
D24V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        5      6      8
  19P GAIN WILD-TYPE     15     18     14
D24V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                6                 18
  CLUS_3                8                 14
D24V6, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    2 17
  19P GAIN WILD-TYPE  7 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2   17
  19P GAIN WILD-TYPE    7   40
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2               17                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        3      5      4      2      5
  19P GAIN WILD-TYPE      7     11     12      8      9
D24V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        2      5      9      3
  19P GAIN WILD-TYPE     10      3     16     18
D24V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                5                  3
  CLUS_3                9                 16
  CLUS_4                3                 18

Clustering(25) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        0     13      4
  19Q GAIN WILD-TYPE      5     34     10
D25V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               13                 34
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        3     12      2
  19Q GAIN WILD-TYPE     15     23     11
D25V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2               12                 23
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        1     11      5      0
  19Q GAIN WILD-TYPE     18     11     10     10
D25V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               11                 11
  CLUS_3                5                 10
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        4      0     10      1      2
  19Q GAIN WILD-TYPE      6     10      7      5     21
D25V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      5      8
  19Q GAIN WILD-TYPE     16     19     14
D25V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                5                 19
  CLUS_3                8                 14
D25V6, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED    1 16
  19Q GAIN WILD-TYPE  8 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1   16
  19Q GAIN WILD-TYPE    8   41
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2               16                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        3      5      3      2      4
  19Q GAIN WILD-TYPE      7     11     13      8     10
D25V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        1      5      9      2
  19Q GAIN WILD-TYPE     11      3     16     19
D25V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                  3
  CLUS_3                9                 16
  CLUS_4                2                 19

Clustering(26) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        0     14      6
  20P GAIN WILD-TYPE      5     33      8
D26V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                6                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        4     11      5
  20P GAIN WILD-TYPE     14     24      8
D26V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                5                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4     12      3      1
  20P GAIN WILD-TYPE     15     10     12      9
D26V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               12                 10
  CLUS_3                3                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        2      1     11      1      5
  20P GAIN WILD-TYPE      8      9      6      5     18
D26V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        6      6      8
  20P GAIN WILD-TYPE     14     18     14
D26V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                6                 18
  CLUS_3                8                 14
D26V6, binary
                    cls
clus                  0  1
  20P GAIN MUTATED    2 18
  20P GAIN WILD-TYPE  7 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      2   18
  20P GAIN WILD-TYPE    7   39
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2               18                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        1      5      6      3      5
  20P GAIN WILD-TYPE      9     11     10      7      9
D26V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        3      4      9      4
  20P GAIN WILD-TYPE      9      4     16     17
D26V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                4                  4
  CLUS_3                9                 16
  CLUS_4                4                 17

Clustering(27) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        0     15      6
  20Q GAIN WILD-TYPE      5     32      8
D27V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                6                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        4     11      6
  20Q GAIN WILD-TYPE     14     24      7
D27V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                6                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        4     12      3      2
  20Q GAIN WILD-TYPE     15     10     12      8
D27V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               12                 10
  CLUS_3                3                 12
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        2      2     11      1      5
  20Q GAIN WILD-TYPE      8      8      6      5     18
D27V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        7      6      8
  20Q GAIN WILD-TYPE     13     18     14
D27V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                7                 13
  CLUS_2                6                 18
  CLUS_3                8                 14
D27V6, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED    3 18
  20Q GAIN WILD-TYPE  6 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      3   18
  20Q GAIN WILD-TYPE    6   39
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               18                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        1      5      6      3      6
  20Q GAIN WILD-TYPE      9     11     10      7      8
D27V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        4      4      9      4
  20Q GAIN WILD-TYPE      8      4     16     17
D27V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                4                  4
  CLUS_3                9                 16
  CLUS_4                4                 17

Clustering(28) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        0      2      2
  21Q GAIN WILD-TYPE      5     45     12
D28V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 45
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        0      2      2
  21Q GAIN WILD-TYPE     18     33     11
D28V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                 33
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        0      2      1      1
  21Q GAIN WILD-TYPE     19     20     14      9
D28V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 20
  CLUS_3                1                 14
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        0      1      2      1      0
  21Q GAIN WILD-TYPE     10      9     15      5     23
D28V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      1      1
  21Q GAIN WILD-TYPE     18     23     21
D28V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 23
  CLUS_3                1                 21
D28V6, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    1  3
  21Q GAIN WILD-TYPE  8 54
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1    3
  21Q GAIN WILD-TYPE    8   54
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                3                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        0      1      0      1      2
  21Q GAIN WILD-TYPE     10     15     16      9     12
D28V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        1      1      2      0
  21Q GAIN WILD-TYPE     11      7     23     21
D28V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                1                  7
  CLUS_3                2                 23
  CLUS_4                0                 21

Clustering(29) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1     13      5
  22Q GAIN WILD-TYPE      4     34      9
D29V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               13                 34
  CLUS_3                5                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        5      9      5
  22Q GAIN WILD-TYPE     13     26      8
D29V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                9                 26
  CLUS_3                5                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        4     11      3      1
  22Q GAIN WILD-TYPE     15     11     12      9
D29V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 11
  CLUS_3                3                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        2      2      9      1      5
  22Q GAIN WILD-TYPE      8      8      8      5     18
D29V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        4      7      8
  22Q GAIN WILD-TYPE     16     17     14
D29V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                7                 17
  CLUS_3                8                 14
D29V6, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    2 17
  22Q GAIN WILD-TYPE  7 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      2   17
  22Q GAIN WILD-TYPE    7   40
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2               17                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        3      5      4      3      4
  22Q GAIN WILD-TYPE      7     11     12      7     10
D29V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        3      5      7      4
  22Q GAIN WILD-TYPE      9      3     18     17
D29V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                5                  3
  CLUS_3                7                 18
  CLUS_4                4                 17

Clustering(30) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      5      1
  XQ GAIN WILD-TYPE      5     42     13
D30V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                42
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      3      2
  XQ GAIN WILD-TYPE     17     32     11
D30V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               3                32
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        0      6      0      0
  XQ GAIN WILD-TYPE     19     16     15     10
D30V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               0                15
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        0      1      4      0      1
  XQ GAIN WILD-TYPE     10      9     13      6     22
D30V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      3      3
  XQ GAIN WILD-TYPE     20     21     19
D30V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3                21
  CLUS_3               3                19
D30V6, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED    0  6
  XQ GAIN WILD-TYPE  9 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0    6
  XQ GAIN WILD-TYPE    9   51
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               6                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        2      2      1      1      0
  XQ GAIN WILD-TYPE      8     14     15      9     14
D30V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        0      3      3      0
  XQ GAIN WILD-TYPE     12      5     22     21
D30V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                 5
  CLUS_3               3                22
  CLUS_4               0                21

Clustering(31) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        5     36     12
  1P LOSS WILD-TYPE      0     11      2
D31V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              36                11
  CLUS_3              12                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       17     32      4
  1P LOSS WILD-TYPE      1      3      9
D31V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              32                 3
  CLUS_3               4                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       19     16     14      4
  1P LOSS WILD-TYPE      0      6      1      6
D31V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              16                 6
  CLUS_3              14                 1
  CLUS_4               4                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        9      3     12      6     23
  1P LOSS WILD-TYPE      1      7      5      0      0
D31V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       13     21     19
  1P LOSS WILD-TYPE      7      3      3
D31V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              21                 3
  CLUS_3              19                 3
D31V6, binary
                   cls
clus                 0  1
  1P LOSS MUTATED    3 50
  1P LOSS WILD-TYPE  6  7
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   50
  1P LOSS WILD-TYPE    6    7
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                 6
  CLUS_2              50                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        8     12     16      8      9
  1P LOSS WILD-TYPE      2      4      0      2      5
D31V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        6      5     21     21
  1P LOSS WILD-TYPE      6      3      4      0
D31V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                 6
  CLUS_2               5                 3
  CLUS_3              21                 4
  CLUS_4              21                 0

Clustering(32) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        5     35     12
  1Q LOSS WILD-TYPE      0     12      2
D32V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              35                12
  CLUS_3              12                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       17     32      3
  1Q LOSS WILD-TYPE      1      3     10
D32V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              32                 3
  CLUS_3               3                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       19     16     14      3
  1Q LOSS WILD-TYPE      0      6      1      7
D32V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              16                 6
  CLUS_3              14                 1
  CLUS_4               3                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED       10      2     12      5     23
  1Q LOSS WILD-TYPE      0      8      5      1      0
D32V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       13     20     19
  1Q LOSS WILD-TYPE      7      4      3
D32V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              20                 4
  CLUS_3              19                 3
D32V6, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED    3 49
  1Q LOSS WILD-TYPE  6  8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      3   49
  1Q LOSS WILD-TYPE    6    8
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                 6
  CLUS_2              49                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        8     11     16      8      9
  1Q LOSS WILD-TYPE      2      5      0      2      5
D32V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        6      5     20     21
  1Q LOSS WILD-TYPE      6      3      5      0
D32V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                 6
  CLUS_2               5                 3
  CLUS_3              20                 5
  CLUS_4              21                 0

Clustering(33) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5     29     12
  2P LOSS WILD-TYPE      0     18      2
D33V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              29                18
  CLUS_3              12                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       17     28      1
  2P LOSS WILD-TYPE      1      7     12
D33V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              28                 7
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       19     14     13      0
  2P LOSS WILD-TYPE      0      8      2     10
D33V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              14                 8
  CLUS_3              13                 2
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED       10      0     11      3     22
  2P LOSS WILD-TYPE      0     10      6      3      1
D33V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       10     19     17
  2P LOSS WILD-TYPE     10      5      5
D33V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              10                10
  CLUS_2              19                 5
  CLUS_3              17                 5
D33V6, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    1 45
  2P LOSS WILD-TYPE  8 12
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1   45
  2P LOSS WILD-TYPE    8   12
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                 8
  CLUS_2              45                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        8      8     15      8      7
  2P LOSS WILD-TYPE      2      8      1      2      7
D33V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      4     18     21
  2P LOSS WILD-TYPE      9      4      7      0
D33V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               4                 4
  CLUS_3              18                 7
  CLUS_4              21                 0

Clustering(34) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5     29     12
  2Q LOSS WILD-TYPE      0     18      2
D34V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              29                18
  CLUS_3              12                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       17     28      1
  2Q LOSS WILD-TYPE      1      7     12
D34V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              28                 7
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       19     14     13      0
  2Q LOSS WILD-TYPE      0      8      2     10
D34V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              14                 8
  CLUS_3              13                 2
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED       10      0     11      3     22
  2Q LOSS WILD-TYPE      0     10      6      3      1
D34V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       10     19     17
  2Q LOSS WILD-TYPE     10      5      5
D34V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              10                10
  CLUS_2              19                 5
  CLUS_3              17                 5
D34V6, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    1 45
  2Q LOSS WILD-TYPE  8 12
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1   45
  2Q LOSS WILD-TYPE    8   12
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                 8
  CLUS_2              45                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        8      8     15      8      7
  2Q LOSS WILD-TYPE      2      8      1      2      7
D34V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        3      4     18     21
  2Q LOSS WILD-TYPE      9      4      7      0
D34V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               4                 4
  CLUS_3              18                 7
  CLUS_4              21                 0

Clustering(35) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        0      4      5
  3P LOSS WILD-TYPE      5     43      9
D35V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               4                43
  CLUS_3               5                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        3      5      1
  3P LOSS WILD-TYPE     15     30     12
D35V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        0      6      2      1
  3P LOSS WILD-TYPE     19     16     13      9
D35V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        0      1      5      3      0
  3P LOSS WILD-TYPE     10      9     12      3     23
D35V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        2      4      3
  3P LOSS WILD-TYPE     18     20     19
D35V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2               4                20
  CLUS_3               3                19
D35V6, binary
                   cls
clus                 0  1
  3P LOSS MUTATED    0  9
  3P LOSS WILD-TYPE  9 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      0    9
  3P LOSS WILD-TYPE    9   48
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               9                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        1      6      0      1      1
  3P LOSS WILD-TYPE      9     10     16      9     13
D35V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        1      4      3      1
  3P LOSS WILD-TYPE     11      4     22     20
D35V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               4                 4
  CLUS_3               3                22
  CLUS_4               1                20

Clustering(36) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      3      5
  3Q LOSS WILD-TYPE      5     44      9
D36V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                44
  CLUS_3               5                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      5      0
  3Q LOSS WILD-TYPE     15     30     13
D36V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               0                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        0      6      2      0
  3Q LOSS WILD-TYPE     19     16     13     10
D36V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        0      0      5      3      0
  3Q LOSS WILD-TYPE     10     10     12      3     23
D36V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      4      3
  3Q LOSS WILD-TYPE     19     20     19
D36V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               4                20
  CLUS_3               3                19
D36V6, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    0  8
  3Q LOSS WILD-TYPE  9 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0    8
  3Q LOSS WILD-TYPE    9   49
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               8                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        1      6      0      1      0
  3Q LOSS WILD-TYPE      9     10     16      9     14
D36V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        0      4      3      1
  3Q LOSS WILD-TYPE     12      4     22     20
D36V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               4                 4
  CLUS_3               3                22
  CLUS_4               1                20

Clustering(37) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0     10      0
  5P LOSS WILD-TYPE      5     37     14
D37V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              10                37
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      8      1
  5P LOSS WILD-TYPE     17     27     12
D37V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               8                27
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        1      9      0      0
  5P LOSS WILD-TYPE     18     13     15     10
D37V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               9                13
  CLUS_3               0                15
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        0      0      8      0      2
  5P LOSS WILD-TYPE     10     10      9      6     21
D37V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      2      5
  5P LOSS WILD-TYPE     17     22     17
D37V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               2                22
  CLUS_3               5                17
D37V6, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    0 10
  5P LOSS WILD-TYPE  9 47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0   10
  5P LOSS WILD-TYPE    9   47
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2              10                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        0      3      2      2      3
  5P LOSS WILD-TYPE     10     13     14      8     11
D37V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        1      1      7      1
  5P LOSS WILD-TYPE     11      7     18     20
D37V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               1                 7
  CLUS_3               7                18
  CLUS_4               1                20

Clustering(38) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0     10      0
  5Q LOSS WILD-TYPE      5     37     14
D38V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              10                37
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        1      8      1
  5Q LOSS WILD-TYPE     17     27     12
D38V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               8                27
  CLUS_3               1                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      9      0      0
  5Q LOSS WILD-TYPE     18     13     15     10
D38V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               9                13
  CLUS_3               0                15
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        0      0      8      0      2
  5Q LOSS WILD-TYPE     10     10      9      6     21
D38V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        3      2      5
  5Q LOSS WILD-TYPE     17     22     17
D38V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               2                22
  CLUS_3               5                17
D38V6, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    0 10
  5Q LOSS WILD-TYPE  9 47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      0   10
  5Q LOSS WILD-TYPE    9   47
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2              10                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        0      3      2      2      3
  5Q LOSS WILD-TYPE     10     13     14      8     11
D38V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      1      7      1
  5Q LOSS WILD-TYPE     11      7     18     20
D38V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               1                 7
  CLUS_3               7                18
  CLUS_4               1                20

Clustering(39) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        5     34     12
  6P LOSS WILD-TYPE      0     13      2
D39V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              34                13
  CLUS_3              12                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       17     30      4
  6P LOSS WILD-TYPE      1      5      9
D39V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              30                 5
  CLUS_3               4                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       19     15     14      3
  6P LOSS WILD-TYPE      0      7      1      7
D39V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              15                 7
  CLUS_3              14                 1
  CLUS_4               3                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       10      3     12      4     22
  6P LOSS WILD-TYPE      0      7      5      2      1
D39V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       13     20     18
  6P LOSS WILD-TYPE      7      4      4
D39V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              20                 4
  CLUS_3              18                 4
D39V6, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    3 48
  6P LOSS WILD-TYPE  6  9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3   48
  6P LOSS WILD-TYPE    6    9
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                 6
  CLUS_2              48                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        8     10     15      8     10
  6P LOSS WILD-TYPE      2      6      1      2      4
D39V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        6      5     19     21
  6P LOSS WILD-TYPE      6      3      6      0
D39V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               6                 6
  CLUS_2               5                 3
  CLUS_3              19                 6
  CLUS_4              21                 0

Clustering(40) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5     34     12
  6Q LOSS WILD-TYPE      0     13      2
D40V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              34                13
  CLUS_3              12                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       17     30      4
  6Q LOSS WILD-TYPE      1      5      9
D40V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              30                 5
  CLUS_3               4                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       19     15     14      3
  6Q LOSS WILD-TYPE      0      7      1      7
D40V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              15                 7
  CLUS_3              14                 1
  CLUS_4               3                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       10      3     12      4     22
  6Q LOSS WILD-TYPE      0      7      5      2      1
D40V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       13     20     18
  6Q LOSS WILD-TYPE      7      4      4
D40V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              20                 4
  CLUS_3              18                 4
D40V6, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED    3 48
  6Q LOSS WILD-TYPE  6  9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      3   48
  6Q LOSS WILD-TYPE    6    9
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                 6
  CLUS_2              48                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        8     10     15      8     10
  6Q LOSS WILD-TYPE      2      6      1      2      4
D40V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        6      5     19     21
  6Q LOSS WILD-TYPE      6      3      6      0
D40V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               6                 6
  CLUS_2               5                 3
  CLUS_3              19                 6
  CLUS_4              21                 0

Clustering(41) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        0      0      9
  8P LOSS WILD-TYPE      5     47      5
D41V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               0                47
  CLUS_3               9                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      4      0
  8P LOSS WILD-TYPE     13     31     13
D41V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               4                31
  CLUS_3               0                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        6      1      2      0
  8P LOSS WILD-TYPE     13     21     13     10
D41V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                13
  CLUS_2               1                21
  CLUS_3               2                13
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        0      0      0      3      6
  8P LOSS WILD-TYPE     10     10     17      3     17
D41V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      6      2
  8P LOSS WILD-TYPE     19     18     20
D41V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               6                18
  CLUS_3               2                20
D41V6, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    0  9
  8P LOSS WILD-TYPE  9 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      0    9
  8P LOSS WILD-TYPE    9   48
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               9                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        1      3      5      0      0
  8P LOSS WILD-TYPE      9     13     11     10     14
D41V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        0      2      2      5
  8P LOSS WILD-TYPE     12      6     23     16
D41V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               2                 6
  CLUS_3               2                23
  CLUS_4               5                16

Clustering(42) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      0      8
  8Q LOSS WILD-TYPE      5     47      6
D42V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               0                47
  CLUS_3               8                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        5      3      0
  8Q LOSS WILD-TYPE     13     32     13
D42V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               3                32
  CLUS_3               0                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        5      1      2      0
  8Q LOSS WILD-TYPE     14     21     13     10
D42V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                14
  CLUS_2               1                21
  CLUS_3               2                13
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        0      0      0      3      5
  8Q LOSS WILD-TYPE     10     10     17      3     18
D42V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      5      2
  8Q LOSS WILD-TYPE     19     19     20
D42V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               5                19
  CLUS_3               2                20
D42V6, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    0  8
  8Q LOSS WILD-TYPE  9 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0    8
  8Q LOSS WILD-TYPE    9   49
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               8                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        1      3      4      0      0
  8Q LOSS WILD-TYPE      9     13     12     10     14
D42V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0      2      2      4
  8Q LOSS WILD-TYPE     12      6     23     17
D42V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               2                 6
  CLUS_3               2                23
  CLUS_4               4                17

Clustering(43) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        0      8      2
  9P LOSS WILD-TYPE      5     39     12
D43V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        2      6      2
  9P LOSS WILD-TYPE     16     29     11
D43V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               6                29
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        0      6      2      2
  9P LOSS WILD-TYPE     19     16     13      8
D43V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        1      1      3      2      3
  9P LOSS WILD-TYPE      9      9     14      4     20
D43V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        3      3      4
  9P LOSS WILD-TYPE     17     21     18
D43V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               3                21
  CLUS_3               4                18
D43V6, binary
                   cls
clus                 0  1
  9P LOSS MUTATED    2  8
  9P LOSS WILD-TYPE  7 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      2    8
  9P LOSS WILD-TYPE    7   49
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               8                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        1      3      2      1      3
  9P LOSS WILD-TYPE      9     13     14      9     11
D43V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        2      2      5      1
  9P LOSS WILD-TYPE     10      6     20     20
D43V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2               2                 6
  CLUS_3               5                20
  CLUS_4               1                20

Clustering(44) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        0      8      2
  9Q LOSS WILD-TYPE      5     39     12
D44V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        2      6      2
  9Q LOSS WILD-TYPE     16     29     11
D44V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               6                29
  CLUS_3               2                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        0      6      2      2
  9Q LOSS WILD-TYPE     19     16     13      8
D44V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        1      1      3      2      3
  9Q LOSS WILD-TYPE      9      9     14      4     20
D44V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        3      3      4
  9Q LOSS WILD-TYPE     17     21     18
D44V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               3                21
  CLUS_3               4                18
D44V6, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    2  8
  9Q LOSS WILD-TYPE  7 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      2    8
  9Q LOSS WILD-TYPE    7   49
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               8                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        1      3      2      1      3
  9Q LOSS WILD-TYPE      9     13     14      9     11
D44V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        2      2      5      1
  9Q LOSS WILD-TYPE     10      6     20     20
D44V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2               2                 6
  CLUS_3               5                20
  CLUS_4               1                20

Clustering(45) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        5     32     11
  10P LOSS WILD-TYPE      0     15      3
D45V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               32                 15
  CLUS_3               11                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       17     27      4
  10P LOSS WILD-TYPE      1      8      9
D45V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               27                  8
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       19     13     13      3
  10P LOSS WILD-TYPE      0      9      2      7
D45V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               13                  9
  CLUS_3               13                  2
  CLUS_4                3                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED       10      2      9      4     23
  10P LOSS WILD-TYPE      0      8      8      2      0
D45V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       12     18     18
  10P LOSS WILD-TYPE      8      6      4
D45V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               12                  8
  CLUS_2               18                  6
  CLUS_3               18                  4
D45V6, binary
                    cls
clus                  0  1
  10P LOSS MUTATED    3 45
  10P LOSS WILD-TYPE  6 12
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      3   45
  10P LOSS WILD-TYPE    6   12
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               45                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        8      8     16      8      8
  10P LOSS WILD-TYPE      2      8      0      2      6
D45V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        6      3     18     21
  10P LOSS WILD-TYPE      6      5      7      0
D45V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                  6
  CLUS_2                3                  5
  CLUS_3               18                  7
  CLUS_4               21                  0

Clustering(46) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        5     32     12
  10Q LOSS WILD-TYPE      0     15      2
D46V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               32                 15
  CLUS_3               12                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       17     28      4
  10Q LOSS WILD-TYPE      1      7      9
D46V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               28                  7
  CLUS_3                4                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       19     13     14      3
  10Q LOSS WILD-TYPE      0      9      1      7
D46V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               13                  9
  CLUS_3               14                  1
  CLUS_4                3                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED       10      2      9      5     23
  10Q LOSS WILD-TYPE      0      8      8      1      0
D46V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       12     19     18
  10Q LOSS WILD-TYPE      8      5      4
D46V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               12                  8
  CLUS_2               19                  5
  CLUS_3               18                  4
D46V6, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED    3 46
  10Q LOSS WILD-TYPE  6 11
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      3   46
  10Q LOSS WILD-TYPE    6   11
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               46                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        8      9     16      8      8
  10Q LOSS WILD-TYPE      2      7      0      2      6
D46V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        6      4     18     21
  10Q LOSS WILD-TYPE      6      4      7      0
D46V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                  6
  CLUS_2                4                  4
  CLUS_3               18                  7
  CLUS_4               21                  0

Clustering(47) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      5      1
  11P LOSS WILD-TYPE      4     42     13
D47V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                5                 42
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        3      3      1
  11P LOSS WILD-TYPE     15     32     12
D47V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                3                 32
  CLUS_3                1                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        4      0      2      1
  11P LOSS WILD-TYPE     15     22     13      9
D47V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        1      1      0      1      4
  11P LOSS WILD-TYPE      9      9     17      5     19
D47V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      5      1
  11P LOSS WILD-TYPE     19     19     21
D47V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                5                 19
  CLUS_3                1                 21
D47V6, binary
                    cls
clus                  0  1
  11P LOSS MUTATED    1  6
  11P LOSS WILD-TYPE  8 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1    6
  11P LOSS WILD-TYPE    8   51
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                6                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        0      1      4      1      1
  11P LOSS WILD-TYPE     10     15     12      9     13
D47V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        1      2      0      4
  11P LOSS WILD-TYPE     11      6     25     17
D47V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                2                  6
  CLUS_3                0                 25
  CLUS_4                4                 17

Clustering(48) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      5      1
  11Q LOSS WILD-TYPE      4     42     13
D48V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                5                 42
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      3      1
  11Q LOSS WILD-TYPE     15     32     12
D48V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                3                 32
  CLUS_3                1                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        4      0      2      1
  11Q LOSS WILD-TYPE     15     22     13      9
D48V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        1      1      0      1      4
  11Q LOSS WILD-TYPE      9      9     17      5     19
D48V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      5      1
  11Q LOSS WILD-TYPE     19     19     21
D48V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                5                 19
  CLUS_3                1                 21
D48V6, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED    1  6
  11Q LOSS WILD-TYPE  8 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      1    6
  11Q LOSS WILD-TYPE    8   51
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                6                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        0      1      4      1      1
  11Q LOSS WILD-TYPE     10     15     12      9     13
D48V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        1      2      0      4
  11Q LOSS WILD-TYPE     11      6     25     17
D48V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                2                  6
  CLUS_3                0                 25
  CLUS_4                4                 17

Clustering(49) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        5     29      9
  13Q LOSS WILD-TYPE      0     18      5
D49V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               29                 18
  CLUS_3                9                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       11     29      3
  13Q LOSS WILD-TYPE      7      6     10
D49V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               11                  7
  CLUS_2               29                  6
  CLUS_3                3                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       15     13     13      2
  13Q LOSS WILD-TYPE      4      9      2      8
D49V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               15                  4
  CLUS_2               13                  9
  CLUS_3               13                  2
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED       10      2     11      3     17
  13Q LOSS WILD-TYPE      0      8      6      3      6
D49V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       12     16     15
  13Q LOSS WILD-TYPE      8      8      7
D49V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               12                  8
  CLUS_2               16                  8
  CLUS_3               15                  7
D49V6, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED    3 40
  13Q LOSS WILD-TYPE  6 17
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      3   40
  13Q LOSS WILD-TYPE    6   17
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2               40                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        7      9     11      7      9
  13Q LOSS WILD-TYPE      3      7      5      3      5
D49V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        5      4     18     16
  13Q LOSS WILD-TYPE      7      4      7      5
D49V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2                4                  4
  CLUS_3               18                  7
  CLUS_4               16                  5

Clustering(50) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      4      0
  16P LOSS WILD-TYPE      5     43     14
D50V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                 43
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      3      1
  16P LOSS WILD-TYPE     18     32     12
D50V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                 32
  CLUS_3                1                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        0      0      3      1
  16P LOSS WILD-TYPE     19     22     12      9
D50V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 22
  CLUS_3                3                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        3      1      0      0      0
  16P LOSS WILD-TYPE      7      9     17      6     23
D50V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      1      1
  16P LOSS WILD-TYPE     18     23     21
D50V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 23
  CLUS_3                1                 21
D50V6, binary
                    cls
clus                  0  1
  16P LOSS MUTATED    1  3
  16P LOSS WILD-TYPE  8 54
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1    3
  16P LOSS WILD-TYPE    8   54
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                3                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        1      0      1      0      2
  16P LOSS WILD-TYPE      9     16     15     10     12
D50V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        1      0      2      1
  16P LOSS WILD-TYPE     11      8     23     20
D50V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                0                  8
  CLUS_3                2                 23
  CLUS_4                1                 20

Clustering(51) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      5      0
  16Q LOSS WILD-TYPE      5     42     14
D51V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                5                 42
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      4      1
  16Q LOSS WILD-TYPE     18     31     12
D51V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                4                 31
  CLUS_3                1                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        0      0      4      1
  16Q LOSS WILD-TYPE     19     22     11      9
D51V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 22
  CLUS_3                4                 11
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        4      1      0      0      0
  16Q LOSS WILD-TYPE      6      9     17      6     23
D51V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      1      1
  16Q LOSS WILD-TYPE     17     23     21
D51V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                1                 23
  CLUS_3                1                 21
D51V6, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED    2  3
  16Q LOSS WILD-TYPE  7 54
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      2    3
  16Q LOSS WILD-TYPE    7   54
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                3                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      0      1      0      3
  16Q LOSS WILD-TYPE      9     16     15     10     11
D51V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        2      0      2      1
  16Q LOSS WILD-TYPE     10      8     23     20
D51V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                0                  8
  CLUS_3                2                 23
  CLUS_4                1                 20

Clustering(52) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        5     33     12
  17P LOSS WILD-TYPE      0     14      2
D52V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               33                 14
  CLUS_3               12                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       17     31      2
  17P LOSS WILD-TYPE      1      4     11
D52V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               31                  4
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       19     16     14      1
  17P LOSS WILD-TYPE      0      6      1      9
D52V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               16                  6
  CLUS_3               14                  1
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       10      1     12      4     23
  17P LOSS WILD-TYPE      0      9      5      2      0
D52V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       11     20     19
  17P LOSS WILD-TYPE      9      4      3
D52V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                  9
  CLUS_2               20                  4
  CLUS_3               19                  3
D52V6, binary
                    cls
clus                  0  1
  17P LOSS MUTATED    2 48
  17P LOSS WILD-TYPE  7  9
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      2   48
  17P LOSS WILD-TYPE    7    9
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2               48                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        8     10     16      8      8
  17P LOSS WILD-TYPE      2      6      0      2      6
D52V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        4      5     20     21
  17P LOSS WILD-TYPE      8      3      5      0
D52V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                5                  3
  CLUS_3               20                  5
  CLUS_4               21                  0

Clustering(53) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5     33     12
  17Q LOSS WILD-TYPE      0     14      2
D53V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               33                 14
  CLUS_3               12                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       17     31      2
  17Q LOSS WILD-TYPE      1      4     11
D53V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               31                  4
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       19     16     14      1
  17Q LOSS WILD-TYPE      0      6      1      9
D53V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               16                  6
  CLUS_3               14                  1
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED       10      1     12      4     23
  17Q LOSS WILD-TYPE      0      9      5      2      0
D53V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       11     20     19
  17Q LOSS WILD-TYPE      9      4      3
D53V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                  9
  CLUS_2               20                  4
  CLUS_3               19                  3
D53V6, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    2 48
  17Q LOSS WILD-TYPE  7  9
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      2   48
  17Q LOSS WILD-TYPE    7    9
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2               48                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        8     10     16      8      8
  17Q LOSS WILD-TYPE      2      6      0      2      6
D53V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        4      5     20     21
  17Q LOSS WILD-TYPE      8      3      5      0
D53V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                5                  3
  CLUS_3               20                  5
  CLUS_4               21                  0

Clustering(54) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        1      6      1
  18P LOSS WILD-TYPE      4     41     13
D54V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                6                 41
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        0      7      1
  18P LOSS WILD-TYPE     18     28     12
D54V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                7                 28
  CLUS_3                1                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        1      2      4      1
  18P LOSS WILD-TYPE     18     20     11      9
D54V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                2                 20
  CLUS_3                4                 11
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        4      1      2      0      1
  18P LOSS WILD-TYPE      6      9     15      6     22
D54V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        2      4      2
  18P LOSS WILD-TYPE     18     20     20
D54V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                4                 20
  CLUS_3                2                 20
D54V6, binary
                    cls
clus                  0  1
  18P LOSS MUTATED    1  7
  18P LOSS WILD-TYPE  8 50
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1    7
  18P LOSS WILD-TYPE    8   50
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                7                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        2      1      2      1      2
  18P LOSS WILD-TYPE      8     15     14      9     12
D54V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        1      1      3      3
  18P LOSS WILD-TYPE     11      7     22     18
D54V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                1                  7
  CLUS_3                3                 22
  CLUS_4                3                 18

Clustering(55) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        1      8      1
  18Q LOSS WILD-TYPE      4     39     13
D55V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                8                 39
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        0      8      2
  18Q LOSS WILD-TYPE     18     27     11
D55V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                8                 27
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        2      2      4      2
  18Q LOSS WILD-TYPE     17     20     11      8
D55V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 20
  CLUS_3                4                 11
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        4      2      2      0      2
  18Q LOSS WILD-TYPE      6      8     15      6     21
D55V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3      5      2
  18Q LOSS WILD-TYPE     17     19     20
D55V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                5                 19
  CLUS_3                2                 20
D55V6, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED    2  8
  18Q LOSS WILD-TYPE  7 49
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      2    8
  18Q LOSS WILD-TYPE    7   49
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                8                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        3      1      2      1      3
  18Q LOSS WILD-TYPE      7     15     14      9     11
D55V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        2      1      3      4
  18Q LOSS WILD-TYPE     10      7     22     17
D55V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                1                  7
  CLUS_3                3                 22
  CLUS_4                4                 17

Clustering(56) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        0      2      1
  19Q LOSS WILD-TYPE      5     45     13
D56V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 45
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      1
  19Q LOSS WILD-TYPE     17     34     12
D56V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                 34
  CLUS_3                1                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        1      1      0      1
  19Q LOSS WILD-TYPE     18     21     15      9
D56V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 21
  CLUS_3                0                 15
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        0      1      1      0      1
  19Q LOSS WILD-TYPE     10      9     16      6     22
D56V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      2      0
  19Q LOSS WILD-TYPE     19     22     22
D56V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 22
  CLUS_3                0                 22
D56V6, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    1  2
  19Q LOSS WILD-TYPE  8 55
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      1    2
  19Q LOSS WILD-TYPE    8   55
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                2                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      0      1      0      1
  19Q LOSS WILD-TYPE      9     16     15     10     13
D56V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        1      0      0      2
  19Q LOSS WILD-TYPE     11      8     25     19
D56V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                0                  8
  CLUS_3                0                 25
  CLUS_4                2                 19

Clustering(57) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      3      0
  20P LOSS WILD-TYPE      4     44     14
D57V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                 44
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      3      0
  20P LOSS WILD-TYPE     17     32     13
D57V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                3                 32
  CLUS_3                0                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        2      0      2      0
  20P LOSS WILD-TYPE     17     22     13     10
D57V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        2      0      0      0      2
  20P LOSS WILD-TYPE      8     10     17      6     21
D57V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        2      2      0
  20P LOSS WILD-TYPE     18     22     22
D57V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                2                 22
  CLUS_3                0                 22
D57V6, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    0  4
  20P LOSS WILD-TYPE  9 53
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      0    4
  20P LOSS WILD-TYPE    9   53
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                4                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        1      0      0      1      2
  20P LOSS WILD-TYPE      9     16     16      9     12
D57V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        1      0      0      3
  20P LOSS WILD-TYPE     11      8     25     18
D57V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                0                  8
  CLUS_3                0                 25
  CLUS_4                3                 18

Clustering(58) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      3      0
  20Q LOSS WILD-TYPE      5     44     14
D58V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                 44
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      3      0
  20Q LOSS WILD-TYPE     18     32     13
D58V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                 32
  CLUS_3                0                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      0      2      0
  20Q LOSS WILD-TYPE     18     22     13     10
D58V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        2      0      0      0      1
  20Q LOSS WILD-TYPE      8     10     17      6     22
D58V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      1      0
  20Q LOSS WILD-TYPE     18     23     22
D58V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 23
  CLUS_3                0                 22
D58V6, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    0  3
  20Q LOSS WILD-TYPE  9 54
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0    3
  20Q LOSS WILD-TYPE    9   54
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                3                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      0      0      2
  20Q LOSS WILD-TYPE      9     16     16     10     12
D58V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      0      0      2
  20Q LOSS WILD-TYPE     11      8     25     19
D58V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                0                  8
  CLUS_3                0                 25
  CLUS_4                2                 19

Clustering(59) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        2     26      7
  21Q LOSS WILD-TYPE      3     21      7
D59V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               26                 21
  CLUS_3                7                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       12     21      2
  21Q LOSS WILD-TYPE      6     14     11
D59V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                  6
  CLUS_2               21                 14
  CLUS_3                2                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       13     12      7      3
  21Q LOSS WILD-TYPE      6     10      8      7
D59V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                  6
  CLUS_2               12                 10
  CLUS_3                7                  8
  CLUS_4                3                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        6      2      8      2     17
  21Q LOSS WILD-TYPE      4      8      9      4      6
D59V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       10     13     12
  21Q LOSS WILD-TYPE     10     11     10
D59V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                 10
  CLUS_2               13                 11
  CLUS_3               12                 10
D59V6, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED    4 31
  21Q LOSS WILD-TYPE  5 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      4   31
  21Q LOSS WILD-TYPE    5   26
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  5
  CLUS_2               31                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        7      8      9      5      6
  21Q LOSS WILD-TYPE      3      8      7      5      8
D59V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        4      3     13     15
  21Q LOSS WILD-TYPE      8      5     12      6
D59V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                3                  5
  CLUS_3               13                 12
  CLUS_4               15                  6

Clustering(60) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        0      7      1
  22Q LOSS WILD-TYPE      5     40     13
D60V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                7                 40
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      7      0
  22Q LOSS WILD-TYPE     17     28     13
D60V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                7                 28
  CLUS_3                0                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        1      5      2      0
  22Q LOSS WILD-TYPE     18     17     13     10
D60V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                5                 17
  CLUS_3                2                 13
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        2      0      5      0      1
  22Q LOSS WILD-TYPE      8     10     12      6     22
D60V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        3      3      2
  22Q LOSS WILD-TYPE     17     21     20
D60V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                3                 21
  CLUS_3                2                 20
D60V6, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED    0  8
  22Q LOSS WILD-TYPE  9 49
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      0    8
  22Q LOSS WILD-TYPE    9   49
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                8                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        2      2      2      0      2
  22Q LOSS WILD-TYPE      8     14     14     10     12
D60V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        0      0      5      3
  22Q LOSS WILD-TYPE     12      8     20     18
D60V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                0                  8
  CLUS_3                5                 20
  CLUS_4                3                 18

Clustering(61) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4     26      9
  XQ LOSS WILD-TYPE      1     21      5
D61V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                 1
  CLUS_2              26                21
  CLUS_3               9                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       12     23      4
  XQ LOSS WILD-TYPE      6     12      9
D61V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                 6
  CLUS_2              23                12
  CLUS_3               4                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       15      9     12      3
  XQ LOSS WILD-TYPE      4     13      3      7
D61V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              15                 4
  CLUS_2               9                13
  CLUS_3              12                 3
  CLUS_4               3                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        9      2      6      4     18
  XQ LOSS WILD-TYPE      1      8     11      2      5
D61V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        9     15     15
  XQ LOSS WILD-TYPE     11      9      7
D61V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                11
  CLUS_2              15                 9
  CLUS_3              15                 7
D61V6, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED    2 37
  XQ LOSS WILD-TYPE  7 20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2   37
  XQ LOSS WILD-TYPE    7   20
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2              37                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        8      7     12      7      5
  XQ LOSS WILD-TYPE      2      9      4      3      9
D61V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        4      3     15     17
  XQ LOSS WILD-TYPE      8      5     10      4
D61V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               3                 5
  CLUS_3              15                10
  CLUS_4              17                 4
> q(save="no")
