
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/6159707/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/6159637/KICH-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KICH-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KICH-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/6159637/KICH-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/6159707/transformed.cor.cli.txt"

nPatients in clinical file=66, in cluster file=66, common to both=66
[1] 40 66
[1] "1P MUTATION ANALYSIS"
[1] 3
  1P MUTATED 1P WILD-TYPE 
          54           12 
  1P MUTATED 1P WILD-TYPE 
          54           12 
[1] "1Q MUTATION ANALYSIS"
[1] 3
  1Q MUTATED 1Q WILD-TYPE 
          53           13 
  1Q MUTATED 1Q WILD-TYPE 
          53           13 
[1] "2P MUTATION ANALYSIS"
[1] 3
  2P MUTATED 2P WILD-TYPE 
          48           18 
  2P MUTATED 2P WILD-TYPE 
          48           18 
[1] "2Q MUTATION ANALYSIS"
[1] 3
  2Q MUTATED 2Q WILD-TYPE 
          48           18 
  2Q MUTATED 2Q WILD-TYPE 
          48           18 
[1] "3P MUTATION ANALYSIS"
[1] 3
  3P MUTATED 3P WILD-TYPE 
          17           49 
  3P MUTATED 3P WILD-TYPE 
          17           49 
[1] "3Q MUTATION ANALYSIS"
[1] 3
  3Q MUTATED 3Q WILD-TYPE 
          16           50 
  3Q MUTATED 3Q WILD-TYPE 
          16           50 
[1] "4P MUTATION ANALYSIS"
[1] 3
  4P MUTATED 4P WILD-TYPE 
          25           41 
  4P MUTATED 4P WILD-TYPE 
          25           41 
[1] "4Q MUTATION ANALYSIS"
[1] 3
  4Q MUTATED 4Q WILD-TYPE 
          25           41 
  4Q MUTATED 4Q WILD-TYPE 
          25           41 
[1] "5P MUTATION ANALYSIS"
[1] 3
  5P MUTATED 5P WILD-TYPE 
          18           48 
  5P MUTATED 5P WILD-TYPE 
          18           48 
[1] "5Q MUTATION ANALYSIS"
[1] 3
  5Q MUTATED 5Q WILD-TYPE 
          18           48 
  5Q MUTATED 5Q WILD-TYPE 
          18           48 
[1] "6P MUTATION ANALYSIS"
[1] 3
  6P MUTATED 6P WILD-TYPE 
          52           14 
  6P MUTATED 6P WILD-TYPE 
          52           14 
[1] "6Q MUTATION ANALYSIS"
[1] 3
  6Q MUTATED 6Q WILD-TYPE 
          52           14 
  6Q MUTATED 6Q WILD-TYPE 
          52           14 
[1] "7P MUTATION ANALYSIS"
[1] 3
  7P MUTATED 7P WILD-TYPE 
          25           41 
  7P MUTATED 7P WILD-TYPE 
          25           41 
[1] "7Q MUTATION ANALYSIS"
[1] 3
  7Q MUTATED 7Q WILD-TYPE 
          25           41 
  7Q MUTATED 7Q WILD-TYPE 
          25           41 
[1] "8P MUTATION ANALYSIS"
[1] 3
  8P MUTATED 8P WILD-TYPE 
          26           40 
  8P MUTATED 8P WILD-TYPE 
          26           40 
[1] "8Q MUTATION ANALYSIS"
[1] 3
  8Q MUTATED 8Q WILD-TYPE 
          26           40 
  8Q MUTATED 8Q WILD-TYPE 
          26           40 
[1] "9P MUTATION ANALYSIS"
[1] 3
  9P MUTATED 9P WILD-TYPE 
          20           46 
  9P MUTATED 9P WILD-TYPE 
          20           46 
[1] "9Q MUTATION ANALYSIS"
[1] 3
  9Q MUTATED 9Q WILD-TYPE 
          20           46 
  9Q MUTATED 9Q WILD-TYPE 
          20           46 
[1] "10P MUTATION ANALYSIS"
[1] 3
  10P MUTATED 10P WILD-TYPE 
           52            14 
  10P MUTATED 10P WILD-TYPE 
           52            14 
[1] "10Q MUTATION ANALYSIS"
[1] 3
  10Q MUTATED 10Q WILD-TYPE 
           51            15 
  10Q MUTATED 10Q WILD-TYPE 
           51            15 
[1] "11P MUTATION ANALYSIS"
[1] 3
  11P MUTATED 11P WILD-TYPE 
           22            44 
  11P MUTATED 11P WILD-TYPE 
           22            44 
[1] "11Q MUTATION ANALYSIS"
[1] 3
  11Q MUTATED 11Q WILD-TYPE 
           22            44 
  11Q MUTATED 11Q WILD-TYPE 
           22            44 
[1] "12P MUTATION ANALYSIS"
[1] 3
  12P MUTATED 12P WILD-TYPE 
           21            45 
  12P MUTATED 12P WILD-TYPE 
           21            45 
[1] "12Q MUTATION ANALYSIS"
[1] 3
  12Q MUTATED 12Q WILD-TYPE 
           21            45 
  12Q MUTATED 12Q WILD-TYPE 
           21            45 
[1] "13Q MUTATION ANALYSIS"
[1] 3
  13Q MUTATED 13Q WILD-TYPE 
           45            21 
  13Q MUTATED 13Q WILD-TYPE 
           45            21 
[1] "14Q MUTATION ANALYSIS"
[1] 3
  14Q MUTATED 14Q WILD-TYPE 
           23            43 
  14Q MUTATED 14Q WILD-TYPE 
           23            43 
[1] "15Q MUTATION ANALYSIS"
[1] 3
  15Q MUTATED 15Q WILD-TYPE 
           23            43 
  15Q MUTATED 15Q WILD-TYPE 
           23            43 
[1] "16P MUTATION ANALYSIS"
[1] 3
  16P MUTATED 16P WILD-TYPE 
           25            41 
  16P MUTATED 16P WILD-TYPE 
           25            41 
[1] "16Q MUTATION ANALYSIS"
[1] 3
  16Q MUTATED 16Q WILD-TYPE 
           26            40 
  16Q MUTATED 16Q WILD-TYPE 
           26            40 
[1] "17P MUTATION ANALYSIS"
[1] 3
  17P MUTATED 17P WILD-TYPE 
           50            16 
  17P MUTATED 17P WILD-TYPE 
           50            16 
[1] "17Q MUTATION ANALYSIS"
[1] 3
  17Q MUTATED 17Q WILD-TYPE 
           50            16 
  17Q MUTATED 17Q WILD-TYPE 
           50            16 
[1] "18P MUTATION ANALYSIS"
[1] 3
  18P MUTATED 18P WILD-TYPE 
           25            41 
  18P MUTATED 18P WILD-TYPE 
           25            41 
[1] "18Q MUTATION ANALYSIS"
[1] 3
  18Q MUTATED 18Q WILD-TYPE 
           26            40 
  18Q MUTATED 18Q WILD-TYPE 
           26            40 
[1] "19P MUTATION ANALYSIS"
[1] 3
  19P MUTATED 19P WILD-TYPE 
           20            46 
  19P MUTATED 19P WILD-TYPE 
           20            46 
[1] "19Q MUTATION ANALYSIS"
[1] 3
  19Q MUTATED 19Q WILD-TYPE 
           20            46 
  19Q MUTATED 19Q WILD-TYPE 
           20            46 
[1] "20P MUTATION ANALYSIS"
[1] 3
  20P MUTATED 20P WILD-TYPE 
           24            42 
  20P MUTATED 20P WILD-TYPE 
           24            42 
[1] "20Q MUTATION ANALYSIS"
[1] 3
  20Q MUTATED 20Q WILD-TYPE 
           24            42 
  20Q MUTATED 20Q WILD-TYPE 
           24            42 
[1] "21Q MUTATION ANALYSIS"
[1] 3
  21Q MUTATED 21Q WILD-TYPE 
           39            27 
  21Q MUTATED 21Q WILD-TYPE 
           39            27 
[1] "22Q MUTATION ANALYSIS"
[1] 3
  22Q MUTATED 22Q WILD-TYPE 
           27            39 
  22Q MUTATED 22Q WILD-TYPE 
           27            39 
[1] "XQ MUTATION ANALYSIS"
[1] 3
  XQ MUTATED XQ WILD-TYPE 
          45           21 
  XQ MUTATED XQ WILD-TYPE 
          45           21 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 66 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 66 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        5     37     12
  1P WILD-TYPE      0     10      2
D1V1, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          5            0
  CLUS_2         37           10
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED       17     33      4
  1P WILD-TYPE      1      2      9
D1V2, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         17            1
  CLUS_2         33            2
  CLUS_3          4            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED       19     16     15      4
  1P WILD-TYPE      0      6      0      6
D1V3, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         19            0
  CLUS_2         16            6
  CLUS_3         15            0
  CLUS_4          4            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P MUTATED       10      3     12      6     23
  1P WILD-TYPE      0      7      5      0      0
D1V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED       14     21     19
  1P WILD-TYPE      6      3      3
D1V5, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         14            6
  CLUS_2         21            3
  CLUS_3         19            3
D1V6, binary
              cls
clus            0  1
  1P MUTATED    4 50
  1P WILD-TYPE  5  7
[1] "tbl2"
              cls
clus           [,1] [,2]
  1P MUTATED      4   50
  1P WILD-TYPE    5    7
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          4            5
  CLUS_2         50            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P MUTATED        8     12     16      8     10
  1P WILD-TYPE      2      4      0      2      4
D1V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED        7      5     21     21
  1P WILD-TYPE      5      3      4      0
D1V8, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          7            5
  CLUS_2          5            3
  CLUS_3         21            4
  CLUS_4         21            0

Clustering(2) Variable = 1Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        5     36     12
  1Q WILD-TYPE      0     11      2
D2V1, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          5            0
  CLUS_2         36           11
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED       17     32      4
  1Q WILD-TYPE      1      3      9
D2V2, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         17            1
  CLUS_2         32            3
  CLUS_3          4            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED       19     16     14      4
  1Q WILD-TYPE      0      6      1      6
D2V3, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         19            0
  CLUS_2         16            6
  CLUS_3         14            1
  CLUS_4          4            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q MUTATED       10      3     12      5     23
  1Q WILD-TYPE      0      7      5      1      0
D2V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED       14     20     19
  1Q WILD-TYPE      6      4      3
D2V5, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         14            6
  CLUS_2         20            4
  CLUS_3         19            3
D2V6, binary
              cls
clus            0  1
  1Q MUTATED    4 49
  1Q WILD-TYPE  5  8
[1] "tbl2"
              cls
clus           [,1] [,2]
  1Q MUTATED      4   49
  1Q WILD-TYPE    5    8
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          4            5
  CLUS_2         49            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q MUTATED        8     11     16      8     10
  1Q WILD-TYPE      2      5      0      2      4
D2V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED        7      5     20     21
  1Q WILD-TYPE      5      3      5      0
D2V8, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          7            5
  CLUS_2          5            3
  CLUS_3         20            5
  CLUS_4         21            0

Clustering(3) Variable = 2P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        5     31     12
  2P WILD-TYPE      0     16      2
D3V1, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          5            0
  CLUS_2         31           16
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED       17     28      3
  2P WILD-TYPE      1      7     10
D3V2, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         17            1
  CLUS_2         28            7
  CLUS_3          3           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED       19     15     13      1
  2P WILD-TYPE      0      7      2      9
D3V3, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         19            0
  CLUS_2         15            7
  CLUS_3         13            2
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P MUTATED       10      1     12      3     22
  2P WILD-TYPE      0      9      5      3      1
D3V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED       11     20     17
  2P WILD-TYPE      9      4      5
D3V5, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         11            9
  CLUS_2         20            4
  CLUS_3         17            5
D3V6, binary
              cls
clus            0  1
  2P MUTATED    2 46
  2P WILD-TYPE  7 11
[1] "tbl2"
              cls
clus           [,1] [,2]
  2P MUTATED      2   46
  2P WILD-TYPE    7   11
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          2            7
  CLUS_2         46           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P MUTATED        9      8     15      8      8
  2P WILD-TYPE      1      8      1      2      6
D3V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED        4      5     18     21
  2P WILD-TYPE      8      3      7      0
D3V8, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          4            8
  CLUS_2          5            3
  CLUS_3         18            7
  CLUS_4         21            0

Clustering(4) Variable = 2Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        5     31     12
  2Q WILD-TYPE      0     16      2
D4V1, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          5            0
  CLUS_2         31           16
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED       17     28      3
  2Q WILD-TYPE      1      7     10
D4V2, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         17            1
  CLUS_2         28            7
  CLUS_3          3           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED       19     15     13      1
  2Q WILD-TYPE      0      7      2      9
D4V3, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         19            0
  CLUS_2         15            7
  CLUS_3         13            2
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q MUTATED       10      1     12      3     22
  2Q WILD-TYPE      0      9      5      3      1
D4V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED       11     20     17
  2Q WILD-TYPE      9      4      5
D4V5, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         11            9
  CLUS_2         20            4
  CLUS_3         17            5
D4V6, binary
              cls
clus            0  1
  2Q MUTATED    2 46
  2Q WILD-TYPE  7 11
[1] "tbl2"
              cls
clus           [,1] [,2]
  2Q MUTATED      2   46
  2Q WILD-TYPE    7   11
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          2            7
  CLUS_2         46           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q MUTATED        9      8     15      8      8
  2Q WILD-TYPE      1      8      1      2      6
D4V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED        4      5     18     21
  2Q WILD-TYPE      8      3      7      0
D4V8, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          4            8
  CLUS_2          5            3
  CLUS_3         18            7
  CLUS_4         21            0

Clustering(5) Variable = 3P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        0     12      5
  3P WILD-TYPE      5     35      9
D5V1, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          0            5
  CLUS_2         12           35
  CLUS_3          5            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        4     11      2
  3P WILD-TYPE     14     24     11
D5V2, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          4           14
  CLUS_2         11           24
  CLUS_3          2           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED        3      8      4      2
  3P WILD-TYPE     16     14     11      8
D5V3, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          3           16
  CLUS_2          8           14
  CLUS_3          4           11
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P MUTATED        2      2      6      3      4
  3P WILD-TYPE      8      8     11      3     19
D5V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        6      6      5
  3P WILD-TYPE     14     18     17
D5V5, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          6           14
  CLUS_2          6           18
  CLUS_3          5           17
D5V6, binary
              cls
clus            0  1
  3P MUTATED    2 15
  3P WILD-TYPE  7 42
[1] "tbl2"
              cls
clus           [,1] [,2]
  3P MUTATED      2   15
  3P WILD-TYPE    7   42
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          2            7
  CLUS_2         15           42
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P MUTATED        1      6      5      1      4
  3P WILD-TYPE      9     10     11      9     10
D5V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED        3      4      6      4
  3P WILD-TYPE      9      4     19     17
D5V8, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          3            9
  CLUS_2          4            4
  CLUS_3          6           19
  CLUS_4          4           17

Clustering(6) Variable = 3Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        0     11      5
  3Q WILD-TYPE      5     36      9
D6V1, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          0            5
  CLUS_2         11           36
  CLUS_3          5            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        4     11      1
  3Q WILD-TYPE     14     24     12
D6V2, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          4           14
  CLUS_2         11           24
  CLUS_3          1           12
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED        3      8      4      1
  3Q WILD-TYPE     16     14     11      9
D6V3, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          3           16
  CLUS_2          8           14
  CLUS_3          4           11
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q MUTATED        2      1      6      3      4
  3Q WILD-TYPE      8      9     11      3     19
D6V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        5      6      5
  3Q WILD-TYPE     15     18     17
D6V5, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          5           15
  CLUS_2          6           18
  CLUS_3          5           17
D6V6, binary
              cls
clus            0  1
  3Q MUTATED    2 14
  3Q WILD-TYPE  7 43
[1] "tbl2"
              cls
clus           [,1] [,2]
  3Q MUTATED      2   14
  3Q WILD-TYPE    7   43
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          2            7
  CLUS_2         14           43
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q MUTATED        1      6      5      1      3
  3Q WILD-TYPE      9     10     11      9     11
D6V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED        2      4      6      4
  3Q WILD-TYPE     10      4     19     17
D6V8, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          2           10
  CLUS_2          4            4
  CLUS_3          6           19
  CLUS_4          4           17

Clustering(7) Variable = 4P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        0     17      8
  4P WILD-TYPE      5     30      6
D7V1, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          0            5
  CLUS_2         17           30
  CLUS_3          8            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        6     13      6
  4P WILD-TYPE     12     22      7
D7V2, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          6           12
  CLUS_2         13           22
  CLUS_3          6            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED        4     17      2      2
  4P WILD-TYPE     15      5     13      8
D7V3, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          4           15
  CLUS_2         17            5
  CLUS_3          2           13
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P MUTATED        1      3     14      2      5
  4P WILD-TYPE      9      7      3      4     18
D7V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        7      9      9
  4P WILD-TYPE     13     15     13
D7V5, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          7           13
  CLUS_2          9           15
  CLUS_3          9           13
D7V6, binary
              cls
clus            0  1
  4P MUTATED    2 23
  4P WILD-TYPE  7 34
[1] "tbl2"
              cls
clus           [,1] [,2]
  4P MUTATED      2   23
  4P WILD-TYPE    7   34
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          2            7
  CLUS_2         23           34
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P MUTATED        3      8      6      3      5
  4P WILD-TYPE      7      8     10      7      9
D7V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED        3      6     11      5
  4P WILD-TYPE      9      2     14     16
D7V8, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          3            9
  CLUS_2          6            2
  CLUS_3         11           14
  CLUS_4          5           16

Clustering(8) Variable = 4Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        0     17      8
  4Q WILD-TYPE      5     30      6
D8V1, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          0            5
  CLUS_2         17           30
  CLUS_3          8            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        6     13      6
  4Q WILD-TYPE     12     22      7
D8V2, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          6           12
  CLUS_2         13           22
  CLUS_3          6            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED        4     17      2      2
  4Q WILD-TYPE     15      5     13      8
D8V3, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          4           15
  CLUS_2         17            5
  CLUS_3          2           13
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q MUTATED        1      3     14      2      5
  4Q WILD-TYPE      9      7      3      4     18
D8V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        7      9      9
  4Q WILD-TYPE     13     15     13
D8V5, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          7           13
  CLUS_2          9           15
  CLUS_3          9           13
D8V6, binary
              cls
clus            0  1
  4Q MUTATED    2 23
  4Q WILD-TYPE  7 34
[1] "tbl2"
              cls
clus           [,1] [,2]
  4Q MUTATED      2   23
  4Q WILD-TYPE    7   34
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          2            7
  CLUS_2         23           34
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q MUTATED        3      8      6      3      5
  4Q WILD-TYPE      7      8     10      7      9
D8V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED        3      6     11      5
  4Q WILD-TYPE      9      2     14     16
D8V8, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          3            9
  CLUS_2          6            2
  CLUS_3         11           14
  CLUS_4          5           16

Clustering(9) Variable = 5P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        0     15      3
  5P WILD-TYPE      5     32     11
D9V1, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          0            5
  CLUS_2         15           32
  CLUS_3          3           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        2     13      3
  5P WILD-TYPE     16     22     10
D9V2, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          2           16
  CLUS_2         13           22
  CLUS_3          3           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED        2     11      3      2
  5P WILD-TYPE     17     11     12      8
D9V3, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          2           17
  CLUS_2         11           11
  CLUS_3          3           12
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P MUTATED        2      2     10      1      3
  5P WILD-TYPE      8      8      7      5     20
D9V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        7      5      6
  5P WILD-TYPE     13     19     16
D9V5, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          7           13
  CLUS_2          5           19
  CLUS_3          6           16
D9V6, binary
              cls
clus            0  1
  5P MUTATED    3 15
  5P WILD-TYPE  6 42
[1] "tbl2"
              cls
clus           [,1] [,2]
  5P MUTATED      3   15
  5P WILD-TYPE    6   42
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          3            6
  CLUS_2         15           42
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P MUTATED        1      5      4      2      6
  5P WILD-TYPE      9     11     12      8      8
D9V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED        4      3      9      2
  5P WILD-TYPE      8      5     16     19
D9V8, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          4            8
  CLUS_2          3            5
  CLUS_3          9           16
  CLUS_4          2           19

Clustering(10) Variable = 5Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        0     15      3
  5Q WILD-TYPE      5     32     11
D10V1, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          0            5
  CLUS_2         15           32
  CLUS_3          3           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        2     13      3
  5Q WILD-TYPE     16     22     10
D10V2, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          2           16
  CLUS_2         13           22
  CLUS_3          3           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED        2     11      3      2
  5Q WILD-TYPE     17     11     12      8
D10V3, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          2           17
  CLUS_2         11           11
  CLUS_3          3           12
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q MUTATED        2      2     10      1      3
  5Q WILD-TYPE      8      8      7      5     20
D10V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        7      5      6
  5Q WILD-TYPE     13     19     16
D10V5, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          7           13
  CLUS_2          5           19
  CLUS_3          6           16
D10V6, binary
              cls
clus            0  1
  5Q MUTATED    3 15
  5Q WILD-TYPE  6 42
[1] "tbl2"
              cls
clus           [,1] [,2]
  5Q MUTATED      3   15
  5Q WILD-TYPE    6   42
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          3            6
  CLUS_2         15           42
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q MUTATED        1      5      4      2      6
  5Q WILD-TYPE      9     11     12      8      8
D10V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED        4      3      9      2
  5Q WILD-TYPE      8      5     16     19
D10V8, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          4            8
  CLUS_2          3            5
  CLUS_3          9           16
  CLUS_4          2           19

Clustering(11) Variable = 6P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        5     35     12
  6P WILD-TYPE      0     12      2
D11V1, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          5            0
  CLUS_2         35           12
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED       17     30      5
  6P WILD-TYPE      1      5      8
D11V2, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         17            1
  CLUS_2         30            5
  CLUS_3          5            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED       19     15     14      4
  6P WILD-TYPE      0      7      1      6
D11V3, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         19            0
  CLUS_2         15            7
  CLUS_3         14            1
  CLUS_4          4            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P MUTATED       10      4     12      4     22
  6P WILD-TYPE      0      6      5      2      1
D11V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED       14     20     18
  6P WILD-TYPE      6      4      4
D11V5, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         14            6
  CLUS_2         20            4
  CLUS_3         18            4
D11V6, binary
              cls
clus            0  1
  6P MUTATED    4 48
  6P WILD-TYPE  5  9
[1] "tbl2"
              cls
clus           [,1] [,2]
  6P MUTATED      4   48
  6P WILD-TYPE    5    9
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          4            5
  CLUS_2         48            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P MUTATED        8     10     15      8     11
  6P WILD-TYPE      2      6      1      2      3
D11V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED        7      5     19     21
  6P WILD-TYPE      5      3      6      0
D11V8, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          7            5
  CLUS_2          5            3
  CLUS_3         19            6
  CLUS_4         21            0

Clustering(12) Variable = 6Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        5     35     12
  6Q WILD-TYPE      0     12      2
D12V1, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          5            0
  CLUS_2         35           12
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED       17     30      5
  6Q WILD-TYPE      1      5      8
D12V2, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         17            1
  CLUS_2         30            5
  CLUS_3          5            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED       19     15     14      4
  6Q WILD-TYPE      0      7      1      6
D12V3, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         19            0
  CLUS_2         15            7
  CLUS_3         14            1
  CLUS_4          4            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q MUTATED       10      4     12      4     22
  6Q WILD-TYPE      0      6      5      2      1
D12V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED       14     20     18
  6Q WILD-TYPE      6      4      4
D12V5, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         14            6
  CLUS_2         20            4
  CLUS_3         18            4
D12V6, binary
              cls
clus            0  1
  6Q MUTATED    4 48
  6Q WILD-TYPE  5  9
[1] "tbl2"
              cls
clus           [,1] [,2]
  6Q MUTATED      4   48
  6Q WILD-TYPE    5    9
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          4            5
  CLUS_2         48            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q MUTATED        8     10     15      8     11
  6Q WILD-TYPE      2      6      1      2      3
D12V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED        7      5     19     21
  6Q WILD-TYPE      5      3      6      0
D12V8, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          7            5
  CLUS_2          5            3
  CLUS_3         19            6
  CLUS_4         21            0

Clustering(13) Variable = 7P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        0     18      7
  7P WILD-TYPE      5     29      7
D13V1, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          0            5
  CLUS_2         18           29
  CLUS_3          7            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        6     14      5
  7P WILD-TYPE     12     21      8
D13V2, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          6           12
  CLUS_2         14           21
  CLUS_3          5            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED        4     15      4      2
  7P WILD-TYPE     15      7     11      8
D13V3, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          4           15
  CLUS_2         15            7
  CLUS_3          4           11
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P MUTATED        3      2     12      2      6
  7P WILD-TYPE      7      8      5      4     17
D13V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        7      8     10
  7P WILD-TYPE     13     16     12
D13V5, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          7           13
  CLUS_2          8           16
  CLUS_3         10           12
D13V6, binary
              cls
clus            0  1
  7P MUTATED    3 22
  7P WILD-TYPE  6 35
[1] "tbl2"
              cls
clus           [,1] [,2]
  7P MUTATED      3   22
  7P WILD-TYPE    6   35
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          3            6
  CLUS_2         22           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P MUTATED        2      7      6      4      6
  7P WILD-TYPE      8      9     10      6      8
D13V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED        4      4     12      5
  7P WILD-TYPE      8      4     13     16
D13V8, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          4            8
  CLUS_2          4            4
  CLUS_3         12           13
  CLUS_4          5           16

Clustering(14) Variable = 7Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        0     18      7
  7Q WILD-TYPE      5     29      7
D14V1, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          0            5
  CLUS_2         18           29
  CLUS_3          7            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        6     14      5
  7Q WILD-TYPE     12     21      8
D14V2, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          6           12
  CLUS_2         14           21
  CLUS_3          5            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED        4     15      4      2
  7Q WILD-TYPE     15      7     11      8
D14V3, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          4           15
  CLUS_2         15            7
  CLUS_3          4           11
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q MUTATED        3      2     12      2      6
  7Q WILD-TYPE      7      8      5      4     17
D14V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        7      8     10
  7Q WILD-TYPE     13     16     12
D14V5, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          7           13
  CLUS_2          8           16
  CLUS_3         10           12
D14V6, binary
              cls
clus            0  1
  7Q MUTATED    3 22
  7Q WILD-TYPE  6 35
[1] "tbl2"
              cls
clus           [,1] [,2]
  7Q MUTATED      3   22
  7Q WILD-TYPE    6   35
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          3            6
  CLUS_2         22           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q MUTATED        2      7      6      4      6
  7Q WILD-TYPE      8      9     10      6      8
D14V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED        4      4     12      5
  7Q WILD-TYPE      8      4     13     16
D14V8, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          4            8
  CLUS_2          4            4
  CLUS_3         12           13
  CLUS_4          5           16

Clustering(15) Variable = 8P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        0     14     12
  8P WILD-TYPE      5     33      2
D15V1, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          0            5
  CLUS_2         14           33
  CLUS_3         12            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        8     13      5
  8P WILD-TYPE     10     22      8
D15V2, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          8           10
  CLUS_2         13           22
  CLUS_3          5            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED        8     13      4      1
  8P WILD-TYPE     11      9     11      9
D15V3, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          8           11
  CLUS_2         13            9
  CLUS_3          4           11
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P MUTATED        2      2     10      3      9
  8P WILD-TYPE      8      8      7      3     14
D15V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        7     10      9
  8P WILD-TYPE     13     14     13
D15V5, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          7           13
  CLUS_2         10           14
  CLUS_3          9           13
D15V6, binary
              cls
clus            0  1
  8P MUTATED    2 24
  8P WILD-TYPE  7 33
[1] "tbl2"
              cls
clus           [,1] [,2]
  8P MUTATED      2   24
  8P WILD-TYPE    7   33
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          2            7
  CLUS_2         24           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P MUTATED        2      7      9      3      5
  8P WILD-TYPE      8      9      7      7      9
D15V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED        3      5     11      7
  8P WILD-TYPE      9      3     14     14
D15V8, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          3            9
  CLUS_2          5            3
  CLUS_3         11           14
  CLUS_4          7           14

Clustering(16) Variable = 8Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        0     15     11
  8Q WILD-TYPE      5     32      3
D16V1, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          0            5
  CLUS_2         15           32
  CLUS_3         11            3
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        8     13      5
  8Q WILD-TYPE     10     22      8
D16V2, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          8           10
  CLUS_2         13           22
  CLUS_3          5            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED        7     14      4      1
  8Q WILD-TYPE     12      8     11      9
D16V3, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          7           12
  CLUS_2         14            8
  CLUS_3          4           11
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q MUTATED        2      2     11      3      8
  8Q WILD-TYPE      8      8      6      3     15
D16V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        7     10      9
  8Q WILD-TYPE     13     14     13
D16V5, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          7           13
  CLUS_2         10           14
  CLUS_3          9           13
D16V6, binary
              cls
clus            0  1
  8Q MUTATED    2 24
  8Q WILD-TYPE  7 33
[1] "tbl2"
              cls
clus           [,1] [,2]
  8Q MUTATED      2   24
  8Q WILD-TYPE    7   33
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          2            7
  CLUS_2         24           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q MUTATED        3      7      8      3      5
  8Q WILD-TYPE      7      9      8      7      9
D16V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED        3      6     11      6
  8Q WILD-TYPE      9      2     14     15
D16V8, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          3            9
  CLUS_2          6            2
  CLUS_3         11           14
  CLUS_4          6           15

Clustering(17) Variable = 9P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        0     16      4
  9P WILD-TYPE      5     31     10
D17V1, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          0            5
  CLUS_2         16           31
  CLUS_3          4           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        5     11      4
  9P WILD-TYPE     13     24      9
D17V2, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          5           13
  CLUS_2         11           24
  CLUS_3          4            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED        4     10      3      3
  9P WILD-TYPE     15     12     12      7
D17V3, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          4           15
  CLUS_2         10           12
  CLUS_3          3           12
  CLUS_4          3            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P MUTATED        2      2      7      2      7
  9P WILD-TYPE      8      8     10      4     16
D17V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        7      6      7
  9P WILD-TYPE     13     18     15
D17V5, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          7           13
  CLUS_2          6           18
  CLUS_3          7           15
D17V6, binary
              cls
clus            0  1
  9P MUTATED    4 16
  9P WILD-TYPE  5 41
[1] "tbl2"
              cls
clus           [,1] [,2]
  9P MUTATED      4   16
  9P WILD-TYPE    5   41
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          4            5
  CLUS_2         16           41
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P MUTATED        1      4      6      2      7
  9P WILD-TYPE      9     12     10      8      7
D17V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED        5      2      8      5
  9P WILD-TYPE      7      6     17     16
D17V8, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          5            7
  CLUS_2          2            6
  CLUS_3          8           17
  CLUS_4          5           16

Clustering(18) Variable = 9Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        0     16      4
  9Q WILD-TYPE      5     31     10
D18V1, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          0            5
  CLUS_2         16           31
  CLUS_3          4           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        5     11      4
  9Q WILD-TYPE     13     24      9
D18V2, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          5           13
  CLUS_2         11           24
  CLUS_3          4            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED        4     10      3      3
  9Q WILD-TYPE     15     12     12      7
D18V3, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          4           15
  CLUS_2         10           12
  CLUS_3          3           12
  CLUS_4          3            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q MUTATED        2      2      7      2      7
  9Q WILD-TYPE      8      8     10      4     16
D18V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        7      6      7
  9Q WILD-TYPE     13     18     15
D18V5, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          7           13
  CLUS_2          6           18
  CLUS_3          7           15
D18V6, binary
              cls
clus            0  1
  9Q MUTATED    4 16
  9Q WILD-TYPE  5 41
[1] "tbl2"
              cls
clus           [,1] [,2]
  9Q MUTATED      4   16
  9Q WILD-TYPE    5   41
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          4            5
  CLUS_2         16           41
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q MUTATED        1      4      6      2      7
  9Q WILD-TYPE      9     12     10      8      7
D18V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED        5      2      8      5
  9Q WILD-TYPE      7      6     17     16
D18V8, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          5            7
  CLUS_2          2            6
  CLUS_3          8           17
  CLUS_4          5           16

Clustering(19) Variable = 10P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        5     34     13
  10P WILD-TYPE      0     13      1
D19V1, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           5             0
  CLUS_2          34            13
  CLUS_3          13             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED       17     29      6
  10P WILD-TYPE      1      6      7
D19V2, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          17             1
  CLUS_2          29             6
  CLUS_3           6             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED       19     15     14      4
  10P WILD-TYPE      0      7      1      6
D19V3, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          19             0
  CLUS_2          15             7
  CLUS_3          14             1
  CLUS_4           4             6
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P MUTATED       10      3     11      5     23
  10P WILD-TYPE      0      7      6      1      0
D19V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED       13     20     19
  10P WILD-TYPE      7      4      3
D19V5, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          13             7
  CLUS_2          20             4
  CLUS_3          19             3
D19V6, binary
               cls
clus             0  1
  10P MUTATED    4 48
  10P WILD-TYPE  5  9
[1] "tbl2"
               cls
clus            [,1] [,2]
  10P MUTATED      4   48
  10P WILD-TYPE    5    9
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           4             5
  CLUS_2          48             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P MUTATED        8     10     16      9      9
  10P WILD-TYPE      2      6      0      1      5
D19V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED        7      5     19     21
  10P WILD-TYPE      5      3      6      0
D19V8, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           7             5
  CLUS_2           5             3
  CLUS_3          19             6
  CLUS_4          21             0

Clustering(20) Variable = 10Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        5     34     12
  10Q WILD-TYPE      0     13      2
D20V1, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           5             0
  CLUS_2          34            13
  CLUS_3          12             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED       17     29      5
  10Q WILD-TYPE      1      6      8
D20V2, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          17             1
  CLUS_2          29             6
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED       19     14     14      4
  10Q WILD-TYPE      0      8      1      6
D20V3, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          19             0
  CLUS_2          14             8
  CLUS_3          14             1
  CLUS_4           4             6
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q MUTATED       10      3     10      5     23
  10Q WILD-TYPE      0      7      7      1      0
D20V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED       13     20     18
  10Q WILD-TYPE      7      4      4
D20V5, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          13             7
  CLUS_2          20             4
  CLUS_3          18             4
D20V6, binary
               cls
clus             0  1
  10Q MUTATED    4 47
  10Q WILD-TYPE  5 10
[1] "tbl2"
               cls
clus            [,1] [,2]
  10Q MUTATED      4   47
  10Q WILD-TYPE    5   10
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           4             5
  CLUS_2          47            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q MUTATED        8     10     16      8      9
  10Q WILD-TYPE      2      6      0      2      5
D20V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED        7      5     18     21
  10Q WILD-TYPE      5      3      7      0
D20V8, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           7             5
  CLUS_2           5             3
  CLUS_3          18             7
  CLUS_4          21             0

Clustering(21) Variable = 11P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        1     15      6
  11P WILD-TYPE      4     32      8
D21V1, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           1             4
  CLUS_2          15            32
  CLUS_3           6             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        7     10      5
  11P WILD-TYPE     11     25      8
D21V2, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           7            11
  CLUS_2          10            25
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED        5     13      3      1
  11P WILD-TYPE     14      9     12      9
D21V3, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           5            14
  CLUS_2          13             9
  CLUS_3           3            12
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P MUTATED        2      2     12      1      5
  11P WILD-TYPE      8      8      5      5     18
D21V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        5     10      7
  11P WILD-TYPE     15     14     15
D21V5, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           5            15
  CLUS_2          10            14
  CLUS_3           7            15
D21V6, binary
               cls
clus             0  1
  11P MUTATED    1 21
  11P WILD-TYPE  8 36
[1] "tbl2"
               cls
clus            [,1] [,2]
  11P MUTATED      1   21
  11P WILD-TYPE    8   36
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           1             8
  CLUS_2          21            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P MUTATED        2      6      6      4      4
  11P WILD-TYPE      8     10     10      6     10
D21V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED        2      5      9      6
  11P WILD-TYPE     10      3     16     15
D21V8, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           2            10
  CLUS_2           5             3
  CLUS_3           9            16
  CLUS_4           6            15

Clustering(22) Variable = 11Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        1     15      6
  11Q WILD-TYPE      4     32      8
D22V1, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           1             4
  CLUS_2          15            32
  CLUS_3           6             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        7     10      5
  11Q WILD-TYPE     11     25      8
D22V2, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           7            11
  CLUS_2          10            25
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED        5     14      2      1
  11Q WILD-TYPE     14      8     13      9
D22V3, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           5            14
  CLUS_2          14             8
  CLUS_3           2            13
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q MUTATED        1      2     13      1      5
  11Q WILD-TYPE      9      8      4      5     18
D22V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        4     11      7
  11Q WILD-TYPE     16     13     15
D22V5, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           4            16
  CLUS_2          11            13
  CLUS_3           7            15
D22V6, binary
               cls
clus             0  1
  11Q MUTATED    1 21
  11Q WILD-TYPE  8 36
[1] "tbl2"
               cls
clus            [,1] [,2]
  11Q MUTATED      1   21
  11Q WILD-TYPE    8   36
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           1             8
  CLUS_2          21            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q MUTATED        3      6      5      4      4
  11Q WILD-TYPE      7     10     11      6     10
D22V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED        2      6      8      6
  11Q WILD-TYPE     10      2     17     15
D22V8, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           2            10
  CLUS_2           6             2
  CLUS_3           8            17
  CLUS_4           6            15

Clustering(23) Variable = 12P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        0     17      4
  12P WILD-TYPE      5     30     10
D23V1, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           0             5
  CLUS_2          17            30
  CLUS_3           4            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        4     12      5
  12P WILD-TYPE     14     23      8
D23V2, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           4            14
  CLUS_2          12            23
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED        3     11      4      3
  12P WILD-TYPE     16     11     11      7
D23V3, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           3            16
  CLUS_2          11            11
  CLUS_3           4            11
  CLUS_4           3             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P MUTATED        3      3      9      2      4
  12P WILD-TYPE      7      7      8      4     19
D23V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        7      7      7
  12P WILD-TYPE     13     17     15
D23V5, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           7            13
  CLUS_2           7            17
  CLUS_3           7            15
D23V6, binary
               cls
clus             0  1
  12P MUTATED    4 17
  12P WILD-TYPE  5 40
[1] "tbl2"
               cls
clus            [,1] [,2]
  12P MUTATED      4   17
  12P WILD-TYPE    5   40
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           4             5
  CLUS_2          17            40
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P MUTATED        2      6      5      2      6
  12P WILD-TYPE      8     10     11      8      8
D23V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED        4      5      9      3
  12P WILD-TYPE      8      3     16     18
D23V8, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           4             8
  CLUS_2           5             3
  CLUS_3           9            16
  CLUS_4           3            18

Clustering(24) Variable = 12Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        0     16      5
  12Q WILD-TYPE      5     31      9
D24V1, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           0             5
  CLUS_2          16            31
  CLUS_3           5             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        4     11      6
  12Q WILD-TYPE     14     24      7
D24V2, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           4            14
  CLUS_2          11            24
  CLUS_3           6             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED        4     11      3      3
  12Q WILD-TYPE     15     11     12      7
D24V3, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           4            15
  CLUS_2          11            11
  CLUS_3           3            12
  CLUS_4           3             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q MUTATED        2      3     10      2      4
  12Q WILD-TYPE      8      7      7      4     19
D24V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        7      8      6
  12Q WILD-TYPE     13     16     16
D24V5, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           7            13
  CLUS_2           8            16
  CLUS_3           6            16
D24V6, binary
               cls
clus             0  1
  12Q MUTATED    4 17
  12Q WILD-TYPE  5 40
[1] "tbl2"
               cls
clus            [,1] [,2]
  12Q MUTATED      4   17
  12Q WILD-TYPE    5   40
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           4             5
  CLUS_2          17            40
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q MUTATED        2      6      5      3      5
  12Q WILD-TYPE      8     10     11      7      9
D24V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED        4      5      8      4
  12Q WILD-TYPE      8      3     17     17
D24V8, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           4             8
  CLUS_2           5             3
  CLUS_3           8            17
  CLUS_4           4            17

Clustering(25) Variable = 13Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        5     30     10
  13Q WILD-TYPE      0     17      4
D25V1, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           5             0
  CLUS_2          30            17
  CLUS_3          10             4
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       12     30      3
  13Q WILD-TYPE      6      5     10
D25V2, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          12             6
  CLUS_2          30             5
  CLUS_3           3            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED       15     14     14      2
  13Q WILD-TYPE      4      8      1      8
D25V3, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          15             4
  CLUS_2          14             8
  CLUS_3          14             1
  CLUS_4           2             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q MUTATED       10      3     11      4     17
  13Q WILD-TYPE      0      7      6      2      6
D25V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       12     18     15
  13Q WILD-TYPE      8      6      7
D25V5, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          12             8
  CLUS_2          18             6
  CLUS_3          15             7
D25V6, binary
               cls
clus             0  1
  13Q MUTATED    3 42
  13Q WILD-TYPE  6 15
[1] "tbl2"
               cls
clus            [,1] [,2]
  13Q MUTATED      3   42
  13Q WILD-TYPE    6   15
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           3             6
  CLUS_2          42            15
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q MUTATED        7     11     11      7      9
  13Q WILD-TYPE      3      5      5      3      5
D25V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED        5      5     19     16
  13Q WILD-TYPE      7      3      6      5
D25V8, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           5             7
  CLUS_2           5             3
  CLUS_3          19             6
  CLUS_4          16             5

Clustering(26) Variable = 14Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        0     16      7
  14Q WILD-TYPE      5     31      7
D26V1, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           0             5
  CLUS_2          16            31
  CLUS_3           7             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        6     13      4
  14Q WILD-TYPE     12     22      9
D26V2, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           6            12
  CLUS_2          13            22
  CLUS_3           4             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED        4     14      3      2
  14Q WILD-TYPE     15      8     12      8
D26V3, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           4            15
  CLUS_2          14             8
  CLUS_3           3            12
  CLUS_4           2             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q MUTATED        2      3     12      1      5
  14Q WILD-TYPE      8      7      5      5     18
D26V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        6      9      8
  14Q WILD-TYPE     14     15     14
D26V5, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           6            14
  CLUS_2           9            15
  CLUS_3           8            14
D26V6, binary
               cls
clus             0  1
  14Q MUTATED    3 20
  14Q WILD-TYPE  6 37
[1] "tbl2"
               cls
clus            [,1] [,2]
  14Q MUTATED      3   20
  14Q WILD-TYPE    6   37
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           3             6
  CLUS_2          20            37
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q MUTATED        3      6      6      3      5
  14Q WILD-TYPE      7     10     10      7      9
D26V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED        3      5     10      5
  14Q WILD-TYPE      9      3     15     16
D26V8, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           3             9
  CLUS_2           5             3
  CLUS_3          10            15
  CLUS_4           5            16

Clustering(27) Variable = 15Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        0     16      7
  15Q WILD-TYPE      5     31      7
D27V1, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           0             5
  CLUS_2          16            31
  CLUS_3           7             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        6     13      4
  15Q WILD-TYPE     12     22      9
D27V2, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           6            12
  CLUS_2          13            22
  CLUS_3           4             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED        3     13      6      1
  15Q WILD-TYPE     16      9      9      9
D27V3, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           3            16
  CLUS_2          13             9
  CLUS_3           6             9
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q MUTATED        4      2     11      2      4
  15Q WILD-TYPE      6      8      6      4     19
D27V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        6      9      8
  15Q WILD-TYPE     14     15     14
D27V5, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           6            14
  CLUS_2           9            15
  CLUS_3           8            14
D27V6, binary
               cls
clus             0  1
  15Q MUTATED    2 21
  15Q WILD-TYPE  7 36
[1] "tbl2"
               cls
clus            [,1] [,2]
  15Q MUTATED      2   21
  15Q WILD-TYPE    7   36
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2          21            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q MUTATED        3      6      5      3      6
  15Q WILD-TYPE      7     10     11      7      8
D27V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED        3      4     11      5
  15Q WILD-TYPE      9      4     14     16
D27V8, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           3             9
  CLUS_2           4             4
  CLUS_3          11            14
  CLUS_4           5            16

Clustering(28) Variable = 16P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        0     18      7
  16P WILD-TYPE      5     29      7
D28V1, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           0             5
  CLUS_2          18            29
  CLUS_3           7             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        6     14      5
  16P WILD-TYPE     12     21      8
D28V2, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           6            12
  CLUS_2          14            21
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED        4     16      4      1
  16P WILD-TYPE     15      6     11      9
D28V3, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           4            15
  CLUS_2          16             6
  CLUS_3           4            11
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P MUTATED        3      2     14      1      5
  16P WILD-TYPE      7      8      3      5     18
D28V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        5     10     10
  16P WILD-TYPE     15     14     12
D28V5, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           5            15
  CLUS_2          10            14
  CLUS_3          10            12
D28V6, binary
               cls
clus             0  1
  16P MUTATED    1 24
  16P WILD-TYPE  8 33
[1] "tbl2"
               cls
clus            [,1] [,2]
  16P MUTATED      1   24
  16P WILD-TYPE    8   33
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           1             8
  CLUS_2          24            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P MUTATED        4      7      6      3      5
  16P WILD-TYPE      6      9     10      7      9
D28V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED        2      5     12      6
  16P WILD-TYPE     10      3     13     15
D28V8, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           2            10
  CLUS_2           5             3
  CLUS_3          12            13
  CLUS_4           6            15

Clustering(29) Variable = 16Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        0     19      7
  16Q WILD-TYPE      5     28      7
D29V1, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           0             5
  CLUS_2          19            28
  CLUS_3           7             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        6     15      5
  16Q WILD-TYPE     12     20      8
D29V2, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           6            12
  CLUS_2          15            20
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED        4     16      5      1
  16Q WILD-TYPE     15      6     10      9
D29V3, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           4            15
  CLUS_2          16             6
  CLUS_3           5            10
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q MUTATED        4      2     14      1      5
  16Q WILD-TYPE      6      8      3      5     18
D29V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        6     10     10
  16Q WILD-TYPE     14     14     12
D29V5, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           6            14
  CLUS_2          10            14
  CLUS_3          10            12
D29V6, binary
               cls
clus             0  1
  16Q MUTATED    2 24
  16Q WILD-TYPE  7 33
[1] "tbl2"
               cls
clus            [,1] [,2]
  16Q MUTATED      2   24
  16Q WILD-TYPE    7   33
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2          24            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q MUTATED        4      7      6      3      6
  16Q WILD-TYPE      6      9     10      7      8
D29V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED        3      5     12      6
  16Q WILD-TYPE      9      3     13     15
D29V8, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           3             9
  CLUS_2           5             3
  CLUS_3          12            13
  CLUS_4           6            15

Clustering(30) Variable = 17P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        5     33     12
  17P WILD-TYPE      0     14      2
D30V1, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           5             0
  CLUS_2          33            14
  CLUS_3          12             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED       17     31      2
  17P WILD-TYPE      1      4     11
D30V2, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          17             1
  CLUS_2          31             4
  CLUS_3           2            11
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED       19     16     14      1
  17P WILD-TYPE      0      6      1      9
D30V3, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          19             0
  CLUS_2          16             6
  CLUS_3          14             1
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P MUTATED       10      1     12      4     23
  17P WILD-TYPE      0      9      5      2      0
D30V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED       11     20     19
  17P WILD-TYPE      9      4      3
D30V5, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          11             9
  CLUS_2          20             4
  CLUS_3          19             3
D30V6, binary
               cls
clus             0  1
  17P MUTATED    2 48
  17P WILD-TYPE  7  9
[1] "tbl2"
               cls
clus            [,1] [,2]
  17P MUTATED      2   48
  17P WILD-TYPE    7    9
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           2             7
  CLUS_2          48             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P MUTATED        8     10     16      8      8
  17P WILD-TYPE      2      6      0      2      6
D30V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED        4      5     20     21
  17P WILD-TYPE      8      3      5      0
D30V8, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           4             8
  CLUS_2           5             3
  CLUS_3          20             5
  CLUS_4          21             0

Clustering(31) Variable = 17Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        5     33     12
  17Q WILD-TYPE      0     14      2
D31V1, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           5             0
  CLUS_2          33            14
  CLUS_3          12             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED       17     31      2
  17Q WILD-TYPE      1      4     11
D31V2, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          17             1
  CLUS_2          31             4
  CLUS_3           2            11
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED       19     16     14      1
  17Q WILD-TYPE      0      6      1      9
D31V3, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          19             0
  CLUS_2          16             6
  CLUS_3          14             1
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q MUTATED       10      1     12      4     23
  17Q WILD-TYPE      0      9      5      2      0
D31V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED       11     20     19
  17Q WILD-TYPE      9      4      3
D31V5, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          11             9
  CLUS_2          20             4
  CLUS_3          19             3
D31V6, binary
               cls
clus             0  1
  17Q MUTATED    2 48
  17Q WILD-TYPE  7  9
[1] "tbl2"
               cls
clus            [,1] [,2]
  17Q MUTATED      2   48
  17Q WILD-TYPE    7    9
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2          48             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q MUTATED        8     10     16      8      8
  17Q WILD-TYPE      2      6      0      2      6
D31V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED        4      5     20     21
  17Q WILD-TYPE      8      3      5      0
D31V8, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           4             8
  CLUS_2           5             3
  CLUS_3          20             5
  CLUS_4          21             0

Clustering(32) Variable = 18P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        1     19      5
  18P WILD-TYPE      4     28      9
D32V1, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           1             4
  CLUS_2          19            28
  CLUS_3           5             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        5     15      5
  18P WILD-TYPE     13     20      8
D32V2, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           5            13
  CLUS_2          15            20
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED        2     14      6      3
  18P WILD-TYPE     17      8      9      7
D32V3, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           2            17
  CLUS_2          14             8
  CLUS_3           6             9
  CLUS_4           3             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P MUTATED        5      4     12      1      3
  18P WILD-TYPE      5      6      5      5     20
D32V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        7     11      7
  18P WILD-TYPE     13     13     15
D32V5, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           7            13
  CLUS_2          11            13
  CLUS_3           7            15
D32V6, binary
               cls
clus             0  1
  18P MUTATED    4 21
  18P WILD-TYPE  5 36
[1] "tbl2"
               cls
clus            [,1] [,2]
  18P MUTATED      4   21
  18P WILD-TYPE    5   36
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           4             5
  CLUS_2          21            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P MUTATED        5      7      4      2      7
  18P WILD-TYPE      5      9     12      8      7
D32V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED        5      6      9      5
  18P WILD-TYPE      7      2     16     16
D32V8, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           5             7
  CLUS_2           6             2
  CLUS_3           9            16
  CLUS_4           5            16

Clustering(33) Variable = 18Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        1     20      5
  18Q WILD-TYPE      4     27      9
D33V1, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           1             4
  CLUS_2          20            27
  CLUS_3           5             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        5     16      5
  18Q WILD-TYPE     13     19      8
D33V2, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           5            13
  CLUS_2          16            19
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED        3     14      6      3
  18Q WILD-TYPE     16      8      9      7
D33V3, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           3            16
  CLUS_2          14             8
  CLUS_3           6             9
  CLUS_4           3             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q MUTATED        5      4     12      1      4
  18Q WILD-TYPE      5      6      5      5     19
D33V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        7     12      7
  18Q WILD-TYPE     13     12     15
D33V5, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           7            13
  CLUS_2          12            12
  CLUS_3           7            15
D33V6, binary
               cls
clus             0  1
  18Q MUTATED    4 22
  18Q WILD-TYPE  5 35
[1] "tbl2"
               cls
clus            [,1] [,2]
  18Q MUTATED      4   22
  18Q WILD-TYPE    5   35
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           4             5
  CLUS_2          22            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q MUTATED        6      7      4      2      7
  18Q WILD-TYPE      4      9     12      8      7
D33V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED        5      6      9      6
  18Q WILD-TYPE      7      2     16     15
D33V8, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           5             7
  CLUS_2           6             2
  CLUS_3           9            16
  CLUS_4           6            15

Clustering(34) Variable = 19P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        0     15      5
  19P WILD-TYPE      5     32      9
D34V1, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           0             5
  CLUS_2          15            32
  CLUS_3           5             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        4     13      3
  19P WILD-TYPE     14     22     10
D34V2, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           4            14
  CLUS_2          13            22
  CLUS_3           3            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED        2     12      5      1
  19P WILD-TYPE     17     10     10      9
D34V3, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           2            17
  CLUS_2          12            10
  CLUS_3           5            10
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P MUTATED        4      1     11      1      3
  19P WILD-TYPE      6      9      6      5     20
D34V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        5      7      8
  19P WILD-TYPE     15     17     14
D34V5, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           5            15
  CLUS_2           7            17
  CLUS_3           8            14
D34V6, binary
               cls
clus             0  1
  19P MUTATED    2 18
  19P WILD-TYPE  7 39
[1] "tbl2"
               cls
clus            [,1] [,2]
  19P MUTATED      2   18
  19P WILD-TYPE    7   39
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           2             7
  CLUS_2          18            39
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P MUTATED        4      5      4      2      5
  19P WILD-TYPE      6     11     12      8      9
D34V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED        2      5      9      4
  19P WILD-TYPE     10      3     16     17
D34V8, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           2            10
  CLUS_2           5             3
  CLUS_3           9            16
  CLUS_4           4            17

Clustering(35) Variable = 19Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        0     15      5
  19Q WILD-TYPE      5     32      9
D35V1, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           0             5
  CLUS_2          15            32
  CLUS_3           5             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        4     13      3
  19Q WILD-TYPE     14     22     10
D35V2, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           4            14
  CLUS_2          13            22
  CLUS_3           3            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED        2     12      5      1
  19Q WILD-TYPE     17     10     10      9
D35V3, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           2            17
  CLUS_2          12            10
  CLUS_3           5            10
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q MUTATED        4      1     11      1      3
  19Q WILD-TYPE      6      9      6      5     20
D35V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        5      7      8
  19Q WILD-TYPE     15     17     14
D35V5, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           5            15
  CLUS_2           7            17
  CLUS_3           8            14
D35V6, binary
               cls
clus             0  1
  19Q MUTATED    2 18
  19Q WILD-TYPE  7 39
[1] "tbl2"
               cls
clus            [,1] [,2]
  19Q MUTATED      2   18
  19Q WILD-TYPE    7   39
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2          18            39
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q MUTATED        4      5      4      2      5
  19Q WILD-TYPE      6     11     12      8      9
D35V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED        2      5      9      4
  19Q WILD-TYPE     10      3     16     17
D35V8, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           2            10
  CLUS_2           5             3
  CLUS_3           9            16
  CLUS_4           4            17

Clustering(36) Variable = 20P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        1     17      6
  20P WILD-TYPE      4     30      8
D36V1, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           1             4
  CLUS_2          17            30
  CLUS_3           6             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        5     14      5
  20P WILD-TYPE     13     21      8
D36V2, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           5            13
  CLUS_2          14            21
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED        6     12      5      1
  20P WILD-TYPE     13     10     10      9
D36V3, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           6            13
  CLUS_2          12            10
  CLUS_3           5            10
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P MUTATED        4      1     11      1      7
  20P WILD-TYPE      6      9      6      5     16
D36V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        8      8      8
  20P WILD-TYPE     12     16     14
D36V5, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           8            12
  CLUS_2           8            16
  CLUS_3           8            14
D36V6, binary
               cls
clus             0  1
  20P MUTATED    2 22
  20P WILD-TYPE  7 35
[1] "tbl2"
               cls
clus            [,1] [,2]
  20P MUTATED      2   22
  20P WILD-TYPE    7   35
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           2             7
  CLUS_2          22            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P MUTATED        2      5      6      4      7
  20P WILD-TYPE      8     11     10      6      7
D36V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED        4      4      9      7
  20P WILD-TYPE      8      4     16     14
D36V8, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           4             8
  CLUS_2           4             4
  CLUS_3           9            16
  CLUS_4           7            14

Clustering(37) Variable = 20Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        0     18      6
  20Q WILD-TYPE      5     29      8
D37V1, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           0             5
  CLUS_2          18            29
  CLUS_3           6             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        4     14      6
  20Q WILD-TYPE     14     21      7
D37V2, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           4            14
  CLUS_2          14            21
  CLUS_3           6             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED        5     12      5      2
  20Q WILD-TYPE     14     10     10      8
D37V3, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           5            14
  CLUS_2          12            10
  CLUS_3           5            10
  CLUS_4           2             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q MUTATED        4      2     11      1      6
  20Q WILD-TYPE      6      8      6      5     17
D37V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        9      7      8
  20Q WILD-TYPE     11     17     14
D37V5, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           9            11
  CLUS_2           7            17
  CLUS_3           8            14
D37V6, binary
               cls
clus             0  1
  20Q MUTATED    3 21
  20Q WILD-TYPE  6 36
[1] "tbl2"
               cls
clus            [,1] [,2]
  20Q MUTATED      3   21
  20Q WILD-TYPE    6   36
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           3             6
  CLUS_2          21            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q MUTATED        2      5      6      3      8
  20Q WILD-TYPE      8     11     10      7      6
D37V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED        5      4      9      6
  20Q WILD-TYPE      7      4     16     15
D37V8, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           5             7
  CLUS_2           4             4
  CLUS_3           9            16
  CLUS_4           6            15

Clustering(38) Variable = 21Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        2     28      9
  21Q WILD-TYPE      3     19      5
D38V1, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           2             3
  CLUS_2          28            19
  CLUS_3           9             5
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED       12     23      4
  21Q WILD-TYPE      6     12      9
D38V2, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          12             6
  CLUS_2          23            12
  CLUS_3           4             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED       13     14      8      4
  21Q WILD-TYPE      6      8      7      6
D38V3, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          13             6
  CLUS_2          14             8
  CLUS_3           8             7
  CLUS_4           4             6
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q MUTATED        6      3     10      3     17
  21Q WILD-TYPE      4      7      7      3      6
D38V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED       12     14     13
  21Q WILD-TYPE      8     10      9
D38V5, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          12             8
  CLUS_2          14            10
  CLUS_3          13             9
D38V6, binary
               cls
clus             0  1
  21Q MUTATED    5 34
  21Q WILD-TYPE  4 23
[1] "tbl2"
               cls
clus            [,1] [,2]
  21Q MUTATED      5   34
  21Q WILD-TYPE    4   23
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           5             4
  CLUS_2          34            23
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q MUTATED        7      9      9      6      8
  21Q WILD-TYPE      3      7      7      4      6
D38V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED        5      4     15     15
  21Q WILD-TYPE      7      4     10      6
D38V8, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           5             7
  CLUS_2           4             4
  CLUS_3          15            10
  CLUS_4          15             6

Clustering(39) Variable = 22Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        1     20      6
  22Q WILD-TYPE      4     27      8
D39V1, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           1             4
  CLUS_2          20            27
  CLUS_3           6             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        6     16      5
  22Q WILD-TYPE     12     19      8
D39V2, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           6            12
  CLUS_2          16            19
  CLUS_3           5             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED        5     16      5      1
  22Q WILD-TYPE     14      6     10      9
D39V3, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           5            14
  CLUS_2          16             6
  CLUS_3           5            10
  CLUS_4           1             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q MUTATED        4      2     14      1      6
  22Q WILD-TYPE      6      8      3      5     17
D39V4, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        7     10     10
  22Q WILD-TYPE     13     14     12
D39V5, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           7            13
  CLUS_2          10            14
  CLUS_3          10            12
D39V6, binary
               cls
clus             0  1
  22Q MUTATED    2 25
  22Q WILD-TYPE  7 32
[1] "tbl2"
               cls
clus            [,1] [,2]
  22Q MUTATED      2   25
  22Q WILD-TYPE    7   32
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2          25            32
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q MUTATED        5      7      6      3      6
  22Q WILD-TYPE      5      9     10      7      8
D39V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED        3      5     12      7
  22Q WILD-TYPE      9      3     13     14
D39V8, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           3             9
  CLUS_2           5             3
  CLUS_3          12            13
  CLUS_4           7            14

Clustering(40) Variable = XQ MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        4     31     10
  XQ WILD-TYPE      1     16      4
D40V1, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          4            1
  CLUS_2         31           16
  CLUS_3         10            4
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED       13     26      6
  XQ WILD-TYPE      5      9      7
D40V2, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         13            5
  CLUS_2         26            9
  CLUS_3          6            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED       15     15     12      3
  XQ WILD-TYPE      4      7      3      7
D40V3, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         15            4
  CLUS_2         15            7
  CLUS_3         12            3
  CLUS_4          3            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ MUTATED        9      3     10      4     19
  XQ WILD-TYPE      1      7      7      2      4
D40V4, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        9     18     18
  XQ WILD-TYPE     11      6      4
D40V5, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          9           11
  CLUS_2         18            6
  CLUS_3         18            4
D40V6, binary
              cls
clus            0  1
  XQ MUTATED    2 43
  XQ WILD-TYPE  7 14
[1] "tbl2"
              cls
clus           [,1] [,2]
  XQ MUTATED      2   43
  XQ WILD-TYPE    7   14
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          2            7
  CLUS_2         43           14
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ MUTATED       10      9     13      8      5
  XQ WILD-TYPE      0      7      3      2      9
D40V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED        4      6     18     17
  XQ WILD-TYPE      8      2      7      4
D40V8, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          4            8
  CLUS_2          6            2
  CLUS_3         18            7
  CLUS_4         17            4
> q(save="no")
