		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	80 (16%)	424	0.014467	1	0.0064083	1	3.8947e-14	1.78e-11	0.12485	1	0.0087821	1	0.0081425	1	0.051476	1	0.001416	0.385	0.00092925	0.269	1.0801e-09	4.48e-07	0.0093112	1	6.9174e-05	0.0235
1q	87 (17%)	417	0.083675	1	0.12591	1	9.8044e-16	4.55e-13	0.084605	1	0.034921	1	0.0093947	1	0.019435	1	0.0093669	1	4.079e-05	0.0143	1.3224e-06	0.000513	0.018376	1	0.016574	1
2p	89 (18%)	415	0.032608	1	0.051338	1	4.6532e-10	1.95e-07	0.36855	1	0.00017781	0.0573	0.054912	1	0.47251	1	0.37804	1	0.060002	1	0.00036855	0.116	0.0053068	1	0.23061	1
2q	90 (18%)	414	0.10641	1	0.16687	1	4.861e-08	1.95e-05	0.41268	1	0.00032556	0.103	0.079168	1	0.64976	1	0.60418	1	0.093883	1	0.0013333	0.367	0.016853	1	0.16134	1
3p	382 (76%)	122	0.0093277	1	0.0010838	0.306	8.4253e-22	3.99e-19	0.038229	1	0.11565	1	0.059336	1	5.9568e-06	0.00225	1.161e-08	4.73e-06	0.30203	1	0.037235	1	0.028045	1	0.0043446	1
3q	158 (31%)	346	0.23642	1	0.25079	1	5.9805e-10	2.49e-07	0.010394	1	0.034793	1	0.096715	1	1.2192e-05	0.0045	8.436e-06	0.00318	1.5891e-05	0.00578	0.02936	1	0.00059799	0.182	0.0965	1
4p	84 (17%)	420	0.82006	1	0.81885	1	2.405e-10	1.01e-07	0.00065788	0.198	0.025051	1	0.077298	1	0.014883	1	0.090768	1	0.095747	1	0.049326	1	0.044687	1	0.45336	1
4q	78 (15%)	426	0.54414	1	0.55445	1	8.3488e-13	3.69e-10	0.00091457	0.267	0.0092434	1	0.043868	1	0.0021763	0.555	0.010615	1	0.016659	1	0.051525	1	0.016281	1	0.23451	1
5p	192 (38%)	312	0.92366	1	0.87781	1	3.7529e-05	0.0132	0.095714	1	0.067664	1	0.096748	1	0.036025	1	0.001862	0.486	0.076473	1	0.921	1	0.17211	1	0.94023	1
5q	205 (41%)	299	0.39535	1	0.29112	1	0.0042066	1	0.24062	1	0.27105	1	0.08636	1	0.26436	1	0.015658	1	0.63775	1	0.91802	1	0.58726	1	0.86836	1
6p	110 (22%)	394	0.0052592	1	0.0015878	0.427	5.2828e-18	2.48e-15	0.001568	0.423	1.0731e-06	0.000417	0.00094636	0.273	1.7786e-06	0.000688	3.4679e-06	0.00132	9.1505e-10	3.81e-07	2.3763e-05	0.00853	7.7965e-07	0.000306	0.0032897	0.809
6q	135 (27%)	369	0.019357	1	0.010688	1	1.0051e-17	4.69e-15	0.047589	1	2.1039e-05	0.00762	0.0091737	1	0.0010058	0.288	0.0030589	0.76	4.4146e-07	0.000175	0.00041794	0.131	5.8811e-05	0.0202	0.029353	1
7p	170 (34%)	334	0.41594	1	0.57703	1	7.135e-14	3.23e-11	0.0045256	1	3.2248e-06	0.00124	0.0018872	0.491	0.00014701	0.0479	0.00089336	0.262	0.002487	0.629	0.090186	1	0.009137	1	0.24382	1
7q	172 (34%)	332	0.41594	1	0.57703	1	2.1069e-13	9.4e-11	0.0072885	1	4.5153e-06	0.00172	0.00061512	0.186	0.00010805	0.0357	0.00059748	0.182	0.0020889	0.537	0.046289	1	0.035828	1	0.16312	1
8p	165 (33%)	339	0.14425	1	0.22445	1	8.9107e-12	3.84e-09	0.0012402	0.344	0.0018333	0.482	0.07634	1	0.00042393	0.132	0.00082592	0.244	1.3556e-05	0.00498	0.040619	1	0.001846	0.484	0.0077992	1
8q	124 (25%)	380	0.1716	1	0.21777	1	4.8345e-15	2.23e-12	9.9245e-05	0.0329	1.1927e-05	0.00441	0.024433	1	1.034e-05	0.00386	8.9922e-05	0.0299	5.149e-06	0.00195	0.025907	1	1.5757e-05	0.00575	6.9582e-05	0.0236
9p	158 (31%)	346	0.003781	0.923	0.00044026	0.136	6.0777e-41	2.91e-38	3.8195e-17	1.78e-14	2.5425e-05	0.00908	0.0017014	0.453	6.2532e-20	2.95e-17	5.4309e-21	2.57e-18	8.5263e-13	3.76e-10	0.00011029	0.0363	3.298e-08	1.33e-05	0.00017456	0.0566
9q	159 (32%)	345	0.0062838	1	0.0008263	0.244	1.4763e-42	7.09e-40	5.7959e-18	2.71e-15	5.3087e-07	0.00021	0.00042877	0.133	6.5142e-22	3.09e-19	7.1604e-23	3.42e-20	1.1468e-15	5.31e-13	3.5969e-05	0.0127	1.4711e-08	5.97e-06	3.4402e-06	0.00131
10p	82 (16%)	422	0.064879	1	0.10028	1	2.0192e-12	8.82e-10	0.038873	1	0.58332	1	0.16102	1	0.0020807	0.537	0.016892	1	0.0028773	0.722	0.00082856	0.244	0.021004	1	0.17263	1
10q	98 (19%)	406	0.14135	1	0.2011	1	4.4456e-12	1.93e-09	0.010216	1	0.96901	1	0.080061	1	0.0063064	1	0.031975	1	0.0082001	1	0.0070027	1	0.021039	1	0.073239	1
11p	48 (10%)	456	0.086026	1	0.12612	1	9.3679e-11	3.98e-08	0.084825	1	0.038661	1	0.1504	1	0.046405	1	0.050658	1	0.078499	1	0.007134	1	0.041919	1	0.037912	1
11q	51 (10%)	453	0.17348	1	0.23862	1	2.8961e-10	1.22e-07	0.10261	1	0.053156	1	0.30523	1	0.043328	1	0.045006	1	0.069917	1	0.014111	1	0.041919	1	0.073974	1
12p	121 (24%)	383	0.012874	1	0.014228	1	1.658e-13	7.44e-11	0.00010137	0.0336	3.8275e-12	1.67e-09	0.0031027	0.766	5.6142e-11	2.4e-08	1.5423e-10	6.52e-08	5.9341e-09	2.43e-06	0.045544	1	6.6506e-07	0.000262	0.0012758	0.352
12q	123 (24%)	381	0.012874	1	0.014228	1	6.1133e-14	2.78e-11	6.022e-05	0.0206	1.8708e-13	8.38e-11	0.0016246	0.435	3.6052e-11	1.55e-08	3.6093e-11	1.55e-08	1.2088e-09	5e-07	0.050005	1	2.5204e-07	1e-04	0.00065406	0.198
13q	91 (18%)	413	0.012921	1	0.021327	1	4.8815e-10	2.04e-07	0.00074083	0.221	5.8481e-05	0.0201	0.047043	1	2.411e-05	0.00863	3.1282e-06	0.0012	1.096e-05	0.00408	0.00030289	0.096	0.04086	1	0.043123	1
14q	227 (45%)	277	4.782e-05	0.0166	4.7242e-05	0.0165	1.1391e-19	5.37e-17	7.432e-09	3.03e-06	3.6381e-13	1.62e-10	1.7916e-07	7.15e-05	5.2727e-18	2.48e-15	1.691e-15	7.81e-13	1.2377e-14	5.67e-12	0.067623	1	0.00030047	0.0955	0.00056827	0.174
15q	61 (12%)	443	0.13335	1	0.14321	1	5.021e-12	2.17e-09	0.03856	1	0.015262	1	0.085498	1	0.0011114	0.312	0.00047187	0.145	0.0071208	1	0.012196	1	0.052956	1	0.36958	1
16p	115 (23%)	389	0.14922	1	0.21595	1	7.5897e-05	0.0257	0.2993	1	0.007851	1	0.037672	1	0.0060149	1	0.00022455	0.0719	0.012854	1	0.19348	1	0.11288	1	0.25333	1
16q	112 (22%)	392	0.28203	1	0.11955	1	2.9902e-06	0.00115	0.088394	1	0.047145	1	0.090726	1	0.0037059	0.908	0.00024415	0.0779	0.0010492	0.299	0.13406	1	0.034065	1	0.097489	1
17p	70 (14%)	434	8.7024e-06	0.00327	3.1362e-05	0.0111	5.4359e-15	2.5e-12	0.14513	1	0.0018021	0.476	0.00033015	0.104	1.0152e-06	0.000396	1.5771e-08	6.39e-06	3.7117e-08	1.5e-05	6.4404e-11	2.74e-08	0.012682	1	0.042813	1
17q	58 (12%)	446	8.3644e-05	0.028	0.00017454	0.0566	1.3204e-10	5.6e-08	0.2409	1	0.13009	1	0.0061421	1	8.2835e-05	0.0278	9.6887e-07	0.00038	1.2788e-05	0.00471	1.9042e-10	8.04e-08	0.018015	1	0.030447	1
18p	116 (23%)	388	0.012874	1	0.037614	1	1.316e-13	5.92e-11	0.00019817	0.0636	1.124e-05	0.00417	0.047109	1	1.8213e-14	8.32e-12	4.3203e-12	1.88e-09	1.8449e-09	7.6e-07	9.7855e-07	0.000383	3.3474e-05	0.0118	0.017269	1
18q	118 (23%)	386	0.013624	1	0.033029	1	1.1879e-13	5.36e-11	0.00045136	0.139	9.4663e-06	0.00354	0.061001	1	8.1466e-14	3.68e-11	6.6627e-12	2.88e-09	2.4348e-09	1e-06	4.9489e-07	0.000196	1.5875e-05	0.00578	0.0053825	1
19p	61 (12%)	443	0.4334	1	0.48625	1	3.7259e-13	1.65e-10	0.00077104	0.229	0.0059354	1	0.0016811	0.449	0.00068222	0.204	0.0013535	0.37	4.7539e-05	0.0165	0.0030521	0.76	0.0015122	0.41	0.35284	1
19q	60 (12%)	444	0.18009	1	0.30233	1	2.748e-13	1.22e-10	0.00091639	0.267	0.0022787	0.579	0.0025389	0.64	0.0010514	0.299	0.0030084	0.752	4.8862e-05	0.0169	0.00096548	0.277	0.001766	0.468	0.47058	1
20p	118 (23%)	386	0.045714	1	0.06749	1	6.4569e-22	3.07e-19	6.5585e-05	0.0224	6.3113e-09	2.58e-06	0.0019978	0.517	9.7771e-15	4.49e-12	8.6774e-13	3.82e-10	1.7037e-12	7.48e-10	3.4047e-05	0.012	1.2871e-07	5.16e-05	0.0011224	0.314
20q	116 (23%)	388	0.023991	1	0.033029	1	5.2551e-24	2.51e-21	5.6154e-05	0.0194	1.75e-09	7.23e-07	0.0013383	0.367	5.1685e-16	2.4e-13	2.0359e-13	9.1e-11	1.7656e-12	7.73e-10	3.0441e-05	0.0108	1.2871e-07	5.16e-05	0.0011224	0.314
21q	105 (21%)	399	0.11564	1	0.16346	1	2.0769e-11	8.93e-09	8.9114e-05	0.0298	0.00012529	0.041	0.0063166	1	0.00015407	0.0501	2.2106e-05	0.00798	0.00011396	0.0374	0.0010827	0.306	0.021342	1	0.059577	1
22q	79 (16%)	425	0.0043224	1	0.00048457	0.149	5.6727e-14	2.58e-11	0.017586	1	0.030553	1	0.15845	1	9.2638e-06	0.00347	1.5169e-05	0.00555	2.3484e-06	0.000906	0.012489	1	0.0006594	0.198	0.14131	1
xq	75 (15%)	429	0.077517	1	0.086788	1	7.6805e-05	0.0259	0.019709	1	0.0012124	0.337	2.2455e-05	0.00808	0.015025	1	0.0071303	1	0.017839	1	0.00093025	0.269	0.015528	1	0.0020967	0.537
