
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/6068704/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/6159921/KIRC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=KIRC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/6159921/KIRC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/6068704/transformed.cor.cli.txt"

nPatients in clinical file=513, in cluster file=417, common to both=417
[1]   9 417
[1] "BAP1 MUTATION ANALYSIS"
[1] 3
  BAP1 MUTATED BAP1 WILD-TYPE 
            42            375 
  BAP1 MUTATED BAP1 WILD-TYPE 
            42            375 
[1] "VHL MUTATION ANALYSIS"
[1] 3
  VHL MUTATED VHL WILD-TYPE 
          218           199 
  VHL MUTATED VHL WILD-TYPE 
          218           199 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             48             369 
  SETD2 MUTATED SETD2 WILD-TYPE 
             48             369 
[1] "PBRM1 MUTATION ANALYSIS"
[1] 3
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            137             280 
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            137             280 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
             27             390 
  KDM5C MUTATED KDM5C WILD-TYPE 
             27             390 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            18            399 
  PTEN MUTATED PTEN WILD-TYPE 
            18            399 
[1] "TSPAN19 MUTATION ANALYSIS"
[1] 3
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                5               412 
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                5               412 
[1] "TCEB1 MUTATION ANALYSIS"
[1] 3
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              3             414 
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              3             414 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
             6            411 
  NEFH MUTATED NEFH WILD-TYPE 
             6            411 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 417 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 417 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = BAP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        1      7      0
  BAP1 WILD-TYPE     21     14      3
D1V1, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            1             21
  CLUS_2            7             14
  CLUS_3            0              3
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        0      1      7
  BAP1 WILD-TYPE      4     21     13
D1V2, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            1             21
  CLUS_3            7             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       22     13      7
  BAP1 WILD-TYPE    125    169     79
D1V3, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           22            125
  CLUS_2           13            169
  CLUS_3            7             79
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       15      1      7
  BAP1 WILD-TYPE     72     97     51
D1V4, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           15             72
  CLUS_2            1             97
  CLUS_3            7             51
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAP1 MUTATED        2     11     10      1      2     10
  BAP1 WILD-TYPE     86     64     64     58     36     42
D1V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       10     15     11
  BAP1 WILD-TYPE    155    118     77
D1V6, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           10            155
  CLUS_2           15            118
  CLUS_3           11             77
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        5     29      8
  BAP1 WILD-TYPE    168    140     63
D1V7, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            5            168
  CLUS_2           29            140
  CLUS_3            8             63
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        5     36      1
  BAP1 WILD-TYPE    179    149     43
D1V8, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            5            179
  CLUS_2           36            149
  CLUS_3            1             43
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        9      7     26
  BAP1 WILD-TYPE     89    172    104
D1V9, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            9             89
  CLUS_2            7            172
  CLUS_3           26            104
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED       11      6     25
  BAP1 WILD-TYPE    221     15    129
D1V10, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1           11            221
  CLUS_2            6             15
  CLUS_3           25            129
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        3      4      7
  BAP1 WILD-TYPE     40     75     54
D1V11, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            3             40
  CLUS_2            4             75
  CLUS_3            7             54
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        2      9      3
  BAP1 WILD-TYPE     72     50     47
D1V12, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             72
  CLUS_2            9             50
  CLUS_3            3             47

Clustering(2) Variable = VHL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       16      7      1
  VHL WILD-TYPE      6     14      2
D2V1, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          16             6
  CLUS_2           7            14
  CLUS_3           1             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        1     16      7
  VHL WILD-TYPE      3      6     13
D2V2, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1             3
  CLUS_2          16             6
  CLUS_3           7            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       66    106     46
  VHL WILD-TYPE     81     76     40
D2V3, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          66            81
  CLUS_2         106            76
  CLUS_3          46            40
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       51     54     31
  VHL WILD-TYPE     36     44     27
D2V4, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          51            36
  CLUS_2          54            44
  CLUS_3          31            27
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VHL MUTATED       53     41     34     26     21     25
  VHL WILD-TYPE     35     34     40     33     17     27
D2V5, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       90     66     44
  VHL WILD-TYPE     75     67     44
D2V6, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          90            75
  CLUS_2          66            67
  CLUS_3          44            44
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED      109     76     31
  VHL WILD-TYPE     64     93     40
D2V7, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1         109            64
  CLUS_2          76            93
  CLUS_3          31            40
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED      112     87     17
  VHL WILD-TYPE     72     98     27
D2V8, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1         112            72
  CLUS_2          87            98
  CLUS_3          17            27
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       50    106     57
  VHL WILD-TYPE     48     73     73
D2V9, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          50            48
  CLUS_2         106            73
  CLUS_3          57            73
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED      129      9     75
  VHL WILD-TYPE    103     12     79
D2V10, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1         129           103
  CLUS_2           9            12
  CLUS_3          75            79
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       21     49     30
  VHL WILD-TYPE     22     30     31
D2V11, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          21            22
  CLUS_2          49            30
  CLUS_3          30            31
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED       47     28     25
  VHL WILD-TYPE     27     31     25
D2V12, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          47            27
  CLUS_2          28            31
  CLUS_3          25            25

Clustering(3) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2      3      0
  SETD2 WILD-TYPE     20     18      3
D3V1, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              20
  CLUS_2             3              18
  CLUS_3             0               3
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        0      2      3
  SETD2 WILD-TYPE      4     20     17
D3V2, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              20
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       18     18     12
  SETD2 WILD-TYPE    129    164     74
D3V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            18             129
  CLUS_2            18             164
  CLUS_3            12              74
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       24      7      0
  SETD2 WILD-TYPE     63     91     58
D3V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            24              63
  CLUS_2             7              91
  CLUS_3             0              58
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD2 MUTATED       16      6      7      6      3      7
  SETD2 WILD-TYPE     72     69     67     53     35     45
D3V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       15     19     11
  SETD2 WILD-TYPE    150    114     77
D3V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            15             150
  CLUS_2            19             114
  CLUS_3            11              77
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       17     22      9
  SETD2 WILD-TYPE    156    147     62
D3V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            17             156
  CLUS_2            22             147
  CLUS_3             9              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       20     25      3
  SETD2 WILD-TYPE    164    160     41
D3V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            20             164
  CLUS_2            25             160
  CLUS_3             3              41
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        9     22     15
  SETD2 WILD-TYPE     89    157    115
D3V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             9              89
  CLUS_2            22             157
  CLUS_3            15             115
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       30      1     15
  SETD2 WILD-TYPE    202     20    139
D3V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            30             202
  CLUS_2             1              20
  CLUS_3            15             139
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        4     11      7
  SETD2 WILD-TYPE     39     68     54
D3V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             4              39
  CLUS_2            11              68
  CLUS_3             7              54
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       11      9      2
  SETD2 WILD-TYPE     63     50     48
D3V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            11              63
  CLUS_2             9              50
  CLUS_3             2              48

Clustering(4) Variable = PBRM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       10      4      1
  PBRM1 WILD-TYPE     12     17      2
D4V1, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            10              12
  CLUS_2             4              17
  CLUS_3             1               2
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        1     10      4
  PBRM1 WILD-TYPE      3     12     16
D4V2, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1               3
  CLUS_2            10              12
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       54     68     15
  PBRM1 WILD-TYPE     93    114     71
D4V3, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            54              93
  CLUS_2            68             114
  CLUS_3            15              71
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       40     44      7
  PBRM1 WILD-TYPE     47     54     51
D4V4, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            40              47
  CLUS_2            44              54
  CLUS_3             7              51
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PBRM1 MUTATED       46     16     22     17     10     16
  PBRM1 WILD-TYPE     42     59     52     42     28     36
D4V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       53     47     27
  PBRM1 WILD-TYPE    112     86     61
D4V6, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            53             112
  CLUS_2            47              86
  CLUS_3            27              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       71     50     15
  PBRM1 WILD-TYPE    102    119     56
D4V7, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            71             102
  CLUS_2            50             119
  CLUS_3            15              56
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       75     54      7
  PBRM1 WILD-TYPE    109    131     37
D4V8, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            75             109
  CLUS_2            54             131
  CLUS_3             7              37
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       24     74     35
  PBRM1 WILD-TYPE     74    105     95
D4V9, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            24              74
  CLUS_2            74             105
  CLUS_3            35              95
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       92      4     37
  PBRM1 WILD-TYPE    140     17    117
D4V10, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            92             140
  CLUS_2             4              17
  CLUS_3            37             117
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        3     39     19
  PBRM1 WILD-TYPE     40     40     42
D4V11, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              40
  CLUS_2            39              40
  CLUS_3            19              42
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       35     17      9
  PBRM1 WILD-TYPE     39     42     41
D4V12, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            35              39
  CLUS_2            17              42
  CLUS_3             9              41

Clustering(5) Variable = KDM5C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        0      0      0
  KDM5C WILD-TYPE     22     21      3
D5V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        0      0      0
  KDM5C WILD-TYPE      4     22     20
D5V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       14      8      5
  KDM5C WILD-TYPE    133    174     81
D5V3, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            14             133
  CLUS_2             8             174
  CLUS_3             5              81
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       10      4      4
  KDM5C WILD-TYPE     77     94     54
D5V4, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            10              77
  CLUS_2             4              94
  CLUS_3             4              54
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM5C MUTATED        5      3      6      2      2      6
  KDM5C WILD-TYPE     83     72     68     57     36     46
D5V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        8     10      6
  KDM5C WILD-TYPE    157    123     82
D5V6, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             8             157
  CLUS_2            10             123
  CLUS_3             6              82
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        8     16      2
  KDM5C WILD-TYPE    165    153     69
D5V7, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             8             165
  CLUS_2            16             153
  CLUS_3             2              69
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       10     14      2
  KDM5C WILD-TYPE    174    171     42
D5V8, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            10             174
  CLUS_2            14             171
  CLUS_3             2              42
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        2      9     16
  KDM5C WILD-TYPE     96    170    114
D5V9, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              96
  CLUS_2             9             170
  CLUS_3            16             114
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED       17      1      9
  KDM5C WILD-TYPE    215     20    145
D5V10, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            17             215
  CLUS_2             1              20
  CLUS_3             9             145
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        0      5      4
  KDM5C WILD-TYPE     43     74     57
D5V11, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             0              43
  CLUS_2             5              74
  CLUS_3             4              57
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        3      4      2
  KDM5C WILD-TYPE     71     55     48
D5V12, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             3              71
  CLUS_2             4              55
  CLUS_3             2              48

Clustering(6) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      4      0
  PTEN WILD-TYPE     22     17      3
D6V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             22
  CLUS_2            4             17
  CLUS_3            0              3
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      4
  PTEN WILD-TYPE      4     22     16
D6V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0              4
  CLUS_2            0             22
  CLUS_3            4             16
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       10      5      2
  PTEN WILD-TYPE    137    177     84
D6V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10            137
  CLUS_2            5            177
  CLUS_3            2             84
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        5      1      3
  PTEN WILD-TYPE     82     97     55
D6V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             97
  CLUS_3            3             55
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        2      6      2      2      1      5
  PTEN WILD-TYPE     86     69     72     57     37     47
D6V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        9      2      7
  PTEN WILD-TYPE    156    131     81
D6V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            9            156
  CLUS_2            2            131
  CLUS_3            7             81
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0     16      2
  PTEN WILD-TYPE    173    153     69
D6V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0            173
  CLUS_2           16            153
  CLUS_3            2             69
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        3     14      1
  PTEN WILD-TYPE    181    171     43
D6V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            181
  CLUS_2           14            171
  CLUS_3            1             43
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        7      2      9
  PTEN WILD-TYPE     91    177    121
D6V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             91
  CLUS_2            2            177
  CLUS_3            9            121
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      1     11
  PTEN WILD-TYPE    226     20    143
D6V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            226
  CLUS_2            1             20
  CLUS_3           11            143
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      5
  PTEN WILD-TYPE     43     79     56
D6V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             43
  CLUS_2            0             79
  CLUS_3            5             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      4      1
  PTEN WILD-TYPE     74     55     49
D6V12, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             74
  CLUS_2            4             55
  CLUS_3            1             49

Clustering(7) Variable = TSPAN19 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        0      1      0
  TSPAN19 WILD-TYPE     22     20      3
D7V1, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                1                45 
       TCGA-A3-3308        TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3319        TCGA-A3-3320        TCGA-A3-3322        TCGA-A3-3323 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3346        TCGA-A3-3347        TCGA-A3-3349 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365        TCGA-A3-3372 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3378        TCGA-A3-3380        TCGA-A3-3382        TCGA-A3-3383 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3444        TCGA-AK-3455        TCGA-AK-3456        TCGA-AS-3778 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4099        TCGA-B8-4143        TCGA-B8-4148 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4620        TCGA-BP-4161 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4644 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      0      0
  TSPAN19 WILD-TYPE      3     22     20
D7V2, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                1                45 
       TCGA-A3-3308        TCGA-A3-3311        TCGA-A3-3316        TCGA-A3-3317 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3319        TCGA-A3-3320        TCGA-A3-3322        TCGA-A3-3323 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3346        TCGA-A3-3347        TCGA-A3-3349 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3363        TCGA-A3-3365        TCGA-A3-3372 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3378        TCGA-A3-3380        TCGA-A3-3382        TCGA-A3-3383 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3444        TCGA-AK-3455        TCGA-AK-3456        TCGA-AS-3778 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4099        TCGA-B8-4143        TCGA-B8-4148 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4620        TCGA-BP-4161 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4644 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        3      1      1
  TSPAN19 WILD-TYPE    144    181     85
D7V3, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               3               144
  CLUS_2               1               181
  CLUS_3               1                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      1      0
  TSPAN19 WILD-TYPE     86     97     58
D7V4, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                2               241 
       TCGA-A3-3357        TCGA-A3-3358        TCGA-A3-3367        TCGA-A3-3370 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-A3-3373        TCGA-A3-3376        TCGA-A3-3385        TCGA-A3-3387 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3425        TCGA-AK-3428        TCGA-AK-3431        TCGA-AK-3434 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3445        TCGA-AK-3450        TCGA-AK-3454        TCGA-AK-3458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-AK-3460        TCGA-AK-3461        TCGA-B0-4690        TCGA-B0-4691 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4693        TCGA-B0-4694        TCGA-B0-4697        TCGA-B0-4700 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4703        TCGA-B0-4706        TCGA-B0-4707        TCGA-B0-4710 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4712        TCGA-B0-4713        TCGA-B0-4714        TCGA-B0-4718 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4813        TCGA-B0-4814 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4815        TCGA-B0-4816        TCGA-B0-4817        TCGA-B0-4818 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4819        TCGA-B0-4822        TCGA-B0-4823        TCGA-B0-4824 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4827        TCGA-B0-4828        TCGA-B0-4841        TCGA-B0-4842 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4843        TCGA-B0-4844        TCGA-B0-4845        TCGA-B0-4846 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4847        TCGA-B0-4848        TCGA-B0-4849        TCGA-B0-4852 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4945        TCGA-B0-5080        TCGA-B0-5092        TCGA-B0-5094 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5095        TCGA-B0-5096        TCGA-B0-5097        TCGA-B0-5099 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5100        TCGA-B0-5102        TCGA-B0-5104        TCGA-B0-5106 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5107        TCGA-B0-5108        TCGA-B0-5109        TCGA-B0-5110 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5113        TCGA-B0-5116        TCGA-B0-5119        TCGA-B0-5120 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5121        TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5699        TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5710        TCGA-B0-5711        TCGA-B0-5713        TCGA-B0-5812 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4101        TCGA-B2-5633        TCGA-B2-5635 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-5641        TCGA-B4-5377        TCGA-B8-4146        TCGA-B8-4153 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-4621        TCGA-B8-4622        TCGA-B8-5158        TCGA-B8-5159 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5163        TCGA-B8-5164        TCGA-B8-5165        TCGA-B8-5545 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550        TCGA-B8-5551 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5552        TCGA-B8-5553        TCGA-BP-4770        TCGA-BP-4782 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4801        TCGA-BP-4993        TCGA-BP-5010        TCGA-BP-5168 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5169        TCGA-BP-5170        TCGA-BP-5173        TCGA-BP-5174 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5175        TCGA-BP-5176        TCGA-BP-5177        TCGA-BP-5178 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5180        TCGA-BP-5182        TCGA-BP-5183        TCGA-BP-5184 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5185        TCGA-BP-5186        TCGA-BP-5187        TCGA-BP-5189 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5190        TCGA-BP-5191        TCGA-BP-5192        TCGA-BP-5194 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5195        TCGA-BP-5196        TCGA-BP-5198        TCGA-BP-5199 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5200        TCGA-BP-5201        TCGA-BP-5202        TCGA-CJ-4882 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4897        TCGA-CJ-4902        TCGA-CJ-4903        TCGA-CJ-4904 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4905        TCGA-CJ-4907        TCGA-CJ-4908        TCGA-CJ-4912 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4913        TCGA-CJ-4916        TCGA-CJ-4918        TCGA-CJ-4920 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4923        TCGA-CJ-5671        TCGA-CJ-5672        TCGA-CJ-5675 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5677        TCGA-CJ-5678        TCGA-CJ-5679 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5680        TCGA-CJ-5681        TCGA-CJ-5682        TCGA-CJ-5683 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5684        TCGA-CJ-5686        TCGA-CJ-6027        TCGA-CJ-6028 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-6030        TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CJ-6033 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5580        TCGA-CW-5581        TCGA-CW-5583        TCGA-CW-5585 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5588        TCGA-CW-5589        TCGA-CW-5591        TCGA-CW-6087 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-6090        TCGA-CW-6093        TCGA-CZ-4853        TCGA-CZ-4856 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-4859        TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5451        TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5455        TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5463        TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5468        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5984        TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5988        TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5568        TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5576        TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-EU-5907 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSPAN19 MUTATED        1      0      0      3      1      0
  TSPAN19 WILD-TYPE     87     75     74     56     37     52
D7V5, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        4      0      1
  TSPAN19 WILD-TYPE    161    133     87
D7V6, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               4               161
  CLUS_2               0               133
  CLUS_3               1                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      3      0
  TSPAN19 WILD-TYPE    172    166     71
D7V7, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               1               172
  CLUS_2               3               166
  CLUS_3               0                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      2      1
  TSPAN19 WILD-TYPE    183    183     43
D7V8, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               1               183
  CLUS_2               2               183
  CLUS_3               1                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      1      3
  TSPAN19 WILD-TYPE     97    178    127
D7V9, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               1               178
  CLUS_3               3               127
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        2      2      1
  TSPAN19 WILD-TYPE    230     19    153
D7V10, multiclass
        clus
vv       TSPAN19 MUTATED TSPAN19 WILD-TYPE
  CLUS_1               2               230
  CLUS_2               2                19
  CLUS_3               1               153
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      0      1
  TSPAN19 WILD-TYPE     42     79     60
D7V11, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                2               181 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-AK-3458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4700        TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4815        TCGA-B0-4816 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4818        TCGA-B0-4833        TCGA-B0-4836        TCGA-B0-4837 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4852        TCGA-B0-5075        TCGA-B0-5080        TCGA-B0-5085 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5088        TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5699        TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5710        TCGA-B0-5711        TCGA-B0-5713        TCGA-B0-5812 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B2-5641 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553        TCGA-BP-4173 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4759        TCGA-BP-4761        TCGA-BP-4770 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4771        TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4797        TCGA-BP-4804        TCGA-BP-4807        TCGA-BP-4960 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4971        TCGA-BP-4973        TCGA-BP-4974        TCGA-BP-4975 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4976        TCGA-BP-4977        TCGA-BP-4981        TCGA-BP-4982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4986        TCGA-BP-4987        TCGA-BP-4988 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5000 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5001        TCGA-BP-5007        TCGA-BP-5008        TCGA-BP-5009 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4635        TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4878        TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4888 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4889        TCGA-CJ-4890        TCGA-CJ-4891        TCGA-CJ-4895 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4899        TCGA-CJ-5671        TCGA-CJ-5672        TCGA-CJ-5675 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5677        TCGA-CJ-5678        TCGA-CJ-5679 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5680        TCGA-CJ-5681        TCGA-CJ-5682        TCGA-CJ-5683 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5684        TCGA-CJ-5686        TCGA-CJ-6027        TCGA-CJ-6028 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-6030        TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CJ-6033 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5580        TCGA-CW-5581        TCGA-CW-5583        TCGA-CW-5585 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5588        TCGA-CW-5589        TCGA-CW-5591        TCGA-CW-6087 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-6090        TCGA-CW-6093        TCGA-CZ-4854        TCGA-CZ-4857 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-4858        TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5451        TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5455        TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5463        TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5468        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5984        TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5988        TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5568        TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5576        TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-EU-5907 
"TSPAN19 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN19 MUTATED        1      0      1
  TSPAN19 WILD-TYPE     73     59     49
D7V12, multiclass
[1] "Remove cluster labels:" "TSPAN19 MUTATED"       
clus
  TSPAN19 MUTATED TSPAN19 WILD-TYPE 
                2               181 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-AK-3458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4700        TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4815        TCGA-B0-4816 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4818        TCGA-B0-4833        TCGA-B0-4836        TCGA-B0-4837 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-4852        TCGA-B0-5075        TCGA-B0-5080        TCGA-B0-5085 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5088        TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5699        TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B0-5710        TCGA-B0-5711        TCGA-B0-5713        TCGA-B0-5812 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635        TCGA-B2-5641 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5545        TCGA-B8-5546        TCGA-B8-5549        TCGA-B8-5550 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553        TCGA-BP-4173 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4340        TCGA-BP-4759        TCGA-BP-4761        TCGA-BP-4770 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4771        TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4797        TCGA-BP-4804        TCGA-BP-4807        TCGA-BP-4960 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968        TCGA-BP-4970 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4971        TCGA-BP-4973        TCGA-BP-4974        TCGA-BP-4975 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4976        TCGA-BP-4977        TCGA-BP-4981        TCGA-BP-4982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4985        TCGA-BP-4986        TCGA-BP-4987        TCGA-BP-4988 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5000 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-BP-5001        TCGA-BP-5007        TCGA-BP-5008        TCGA-BP-5009 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4635        TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4878        TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4888 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4889        TCGA-CJ-4890        TCGA-CJ-4891        TCGA-CJ-4895 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-4899        TCGA-CJ-5671        TCGA-CJ-5672        TCGA-CJ-5675 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5677        TCGA-CJ-5678        TCGA-CJ-5679 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5680        TCGA-CJ-5681        TCGA-CJ-5682        TCGA-CJ-5683 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-5684        TCGA-CJ-5686        TCGA-CJ-6027        TCGA-CJ-6028 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CJ-6030        TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CJ-6033 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5580        TCGA-CW-5581        TCGA-CW-5583        TCGA-CW-5585 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-5588        TCGA-CW-5589        TCGA-CW-5591        TCGA-CW-6087 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CW-6090        TCGA-CW-6093        TCGA-CZ-4854        TCGA-CZ-4857 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-4858        TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5451        TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5455        TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5463        TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5468        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5984        TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-CZ-5988        TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5568        TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-DV-5576        TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906 
"TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" "TSPAN19 WILD-TYPE" 
       TCGA-EU-5907 
"TSPAN19 WILD-TYPE" 

Clustering(8) Variable = TCEB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      0
  TCEB1 WILD-TYPE     22     21      3
D8V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      0
  TCEB1 WILD-TYPE      4     22     20
D8V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      3
  TCEB1 WILD-TYPE    147    182     83
D8V3, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             147
  CLUS_2             0             182
  CLUS_3             3              83
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      1      0
  TCEB1 WILD-TYPE     87     97     58
D8V4, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              1             242 
     TCGA-A3-3357      TCGA-A3-3358      TCGA-A3-3367      TCGA-A3-3370 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A3-3373      TCGA-A3-3376      TCGA-A3-3385      TCGA-A3-3387 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3425      TCGA-AK-3428      TCGA-AK-3431      TCGA-AK-3434 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3445      TCGA-AK-3450      TCGA-AK-3454      TCGA-AK-3458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3460      TCGA-AK-3461      TCGA-B0-4690      TCGA-B0-4691 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4693      TCGA-B0-4694      TCGA-B0-4697      TCGA-B0-4700 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4703      TCGA-B0-4706      TCGA-B0-4707      TCGA-B0-4710 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4712      TCGA-B0-4713      TCGA-B0-4714      TCGA-B0-4718 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4813      TCGA-B0-4814 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4815      TCGA-B0-4816      TCGA-B0-4817      TCGA-B0-4818 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4819      TCGA-B0-4822      TCGA-B0-4823      TCGA-B0-4824 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4827      TCGA-B0-4828      TCGA-B0-4841      TCGA-B0-4842 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4843      TCGA-B0-4844      TCGA-B0-4845      TCGA-B0-4846 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4847      TCGA-B0-4848      TCGA-B0-4849      TCGA-B0-4852 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4945      TCGA-B0-5080      TCGA-B0-5092      TCGA-B0-5094 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5095      TCGA-B0-5096      TCGA-B0-5097      TCGA-B0-5099 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5100      TCGA-B0-5102      TCGA-B0-5104      TCGA-B0-5106 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5107      TCGA-B0-5108      TCGA-B0-5109      TCGA-B0-5110 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5113      TCGA-B0-5115      TCGA-B0-5116      TCGA-B0-5119 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5120      TCGA-B0-5121      TCGA-B0-5399      TCGA-B0-5400 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5402      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5698      TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5703      TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5709      TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5713 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5812      TCGA-B2-3924      TCGA-B2-4101      TCGA-B2-5633 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B2-5641      TCGA-B4-5377      TCGA-B8-4146 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-4153      TCGA-B8-4621      TCGA-B8-4622      TCGA-B8-5158 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5159      TCGA-B8-5163      TCGA-B8-5164      TCGA-B8-5165 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-BP-4770      TCGA-BP-4782 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4801      TCGA-BP-4993      TCGA-BP-5010      TCGA-BP-5168 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5169      TCGA-BP-5170      TCGA-BP-5173      TCGA-BP-5174 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5175      TCGA-BP-5176      TCGA-BP-5177      TCGA-BP-5178 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5180      TCGA-BP-5182      TCGA-BP-5183      TCGA-BP-5184 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5185      TCGA-BP-5186      TCGA-BP-5187      TCGA-BP-5189 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5190      TCGA-BP-5191      TCGA-BP-5192      TCGA-BP-5194 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5195      TCGA-BP-5196      TCGA-BP-5198      TCGA-BP-5199 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5200      TCGA-BP-5201      TCGA-BP-5202      TCGA-CJ-4882 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4897      TCGA-CJ-4901      TCGA-CJ-4902      TCGA-CJ-4903 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4904      TCGA-CJ-4905      TCGA-CJ-4907      TCGA-CJ-4908 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4912      TCGA-CJ-4913      TCGA-CJ-4916      TCGA-CJ-4918 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4920      TCGA-CJ-4923      TCGA-CJ-5671      TCGA-CJ-5672 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5679      TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5683      TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6028      TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6033      TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5585      TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CW-6090      TCGA-CW-6093      TCGA-CZ-4853 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4856      TCGA-CZ-4859      TCGA-CZ-4863      TCGA-CZ-4865 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4866      TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5458      TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5982      TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5987      TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5575      TCGA-DV-5576      TCGA-EU-5904      TCGA-EU-5905 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5906      TCGA-EU-5907 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCEB1 MUTATED        0      2      1      0      0      0
  TCEB1 WILD-TYPE     88     73     73     59     38     52
D8V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        2      1      0
  TCEB1 WILD-TYPE    163    132     88
D8V6, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             2             163
  CLUS_2             1             132
  CLUS_3             0              88
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      1      2
  TCEB1 WILD-TYPE    173    168     69
D8V7, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             173
  CLUS_2             1             168
  CLUS_3             2              69
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      1      2
  TCEB1 WILD-TYPE    184    184     42
D8V8, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             184
  CLUS_3             2              42
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        2      1      0
  TCEB1 WILD-TYPE     96    178    130
D8V9, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             1             178
  CLUS_3             0             130
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        1      0      2
  TCEB1 WILD-TYPE    231     21    152
D8V10, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             1             231
  CLUS_2             0              21
  CLUS_3             2             152
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        2      0      0
  TCEB1 WILD-TYPE     41     79     61
D8V11, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             181 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-AK-3458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4815      TCGA-B0-4816 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4818      TCGA-B0-4833      TCGA-B0-4836      TCGA-B0-4837 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5075      TCGA-B0-5080      TCGA-B0-5085 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5400      TCGA-B0-5402 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697      TCGA-B0-5698 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702      TCGA-B0-5703 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707      TCGA-B0-5709 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5713      TCGA-B0-5812 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B2-5641 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B8-4146      TCGA-B8-4153      TCGA-B8-4621 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-BP-4173      TCGA-BP-4331 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4759      TCGA-BP-4761      TCGA-BP-4770 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4771      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4797      TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4960 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4971      TCGA-BP-4973      TCGA-BP-4974      TCGA-BP-4975 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4976      TCGA-BP-4977      TCGA-BP-4981      TCGA-BP-4982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4986      TCGA-BP-4987      TCGA-BP-4988 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5000      TCGA-BP-5001      TCGA-BP-5007      TCGA-BP-5008 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-CJ-4635      TCGA-CJ-4870      TCGA-CJ-4875 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4876      TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4887 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4888      TCGA-CJ-4890      TCGA-CJ-4891      TCGA-CJ-4895 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4899      TCGA-CJ-5671      TCGA-CJ-5672      TCGA-CJ-5675 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678      TCGA-CJ-5679 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682      TCGA-CJ-5683 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027      TCGA-CJ-6028 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CJ-6033 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583      TCGA-CW-5585 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6090      TCGA-CW-6093      TCGA-CZ-4854      TCGA-CZ-4857 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4858      TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5576      TCGA-EU-5904      TCGA-EU-5905      TCGA-EU-5906 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5907 
"TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      0      2
  TCEB1 WILD-TYPE     74     59     48
D8V12, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             181 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-AK-3458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4815      TCGA-B0-4816 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4818      TCGA-B0-4833      TCGA-B0-4836      TCGA-B0-4837 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5075      TCGA-B0-5080      TCGA-B0-5085 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5088      TCGA-B0-5399      TCGA-B0-5400      TCGA-B0-5402 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693      TCGA-B0-5694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5697      TCGA-B0-5698 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5699      TCGA-B0-5701      TCGA-B0-5702      TCGA-B0-5703 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5705      TCGA-B0-5706      TCGA-B0-5707      TCGA-B0-5709 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5710      TCGA-B0-5711      TCGA-B0-5713      TCGA-B0-5812 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-5633      TCGA-B2-5635      TCGA-B2-5641 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B8-4146      TCGA-B8-4153      TCGA-B8-4621 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550      TCGA-B8-5551 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5552      TCGA-B8-5553      TCGA-BP-4173      TCGA-BP-4331 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4340      TCGA-BP-4759      TCGA-BP-4761      TCGA-BP-4770 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4771      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4797      TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4960 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4961      TCGA-BP-4967      TCGA-BP-4968      TCGA-BP-4970 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4971      TCGA-BP-4973      TCGA-BP-4974      TCGA-BP-4975 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4976      TCGA-BP-4977      TCGA-BP-4981      TCGA-BP-4982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4985      TCGA-BP-4986      TCGA-BP-4987      TCGA-BP-4988 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5000      TCGA-BP-5001      TCGA-BP-5007      TCGA-BP-5008 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5009      TCGA-CJ-4635      TCGA-CJ-4870      TCGA-CJ-4875 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4876      TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4887 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4888      TCGA-CJ-4890      TCGA-CJ-4891      TCGA-CJ-4895 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4899      TCGA-CJ-5671      TCGA-CJ-5672      TCGA-CJ-5675 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678      TCGA-CJ-5679 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682      TCGA-CJ-5683 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027      TCGA-CJ-6028 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CJ-6033 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583      TCGA-CW-5585 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6090      TCGA-CW-6093      TCGA-CZ-4854      TCGA-CZ-4857 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4858      TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5576      TCGA-EU-5904      TCGA-EU-5905      TCGA-EU-5906 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5907 
"TCEB1 WILD-TYPE" 

Clustering(9) Variable = NEFH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      0      0
  NEFH WILD-TYPE     22     21      3
D9V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      0      0
  NEFH WILD-TYPE      4     22     20
D9V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      3      2
  NEFH WILD-TYPE    146    179     84
D9V3, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            146
  CLUS_2            3            179
  CLUS_3            2             84
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        3      2      0
  NEFH WILD-TYPE     84     96     58
D9V4, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             96
  CLUS_3            0             58
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEFH MUTATED        2      1      1      1      0      1
  NEFH WILD-TYPE     86     74     73     58     38     51
D9V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      2      3
  NEFH WILD-TYPE    164    131     85
D9V6, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            164
  CLUS_2            2            131
  CLUS_3            3             85
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      2      3
  NEFH WILD-TYPE    172    167     68
D9V7, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1            172
  CLUS_2            2            167
  CLUS_3            3             68
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        2      2      2
  NEFH WILD-TYPE    182    183     42
D9V8, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2            182
  CLUS_2            2            183
  CLUS_3            2             42
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      4      2
  NEFH WILD-TYPE     98    175    128
D9V9, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             98
  CLUS_2            4            175
  CLUS_3            2            128
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        4      1      1
  NEFH WILD-TYPE    228     20    153
D9V10, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            4            228
  CLUS_2            1             20
  CLUS_3            1            153
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        0      3      1
  NEFH WILD-TYPE     43     76     60
D9V11, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             43
  CLUS_2            3             76
  CLUS_3            1             60
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        2      1      1
  NEFH WILD-TYPE     72     58     49
D9V12, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2             72
  CLUS_2            1             58
  CLUS_3            1             49
> q(save="no")
