
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/6165954/LGG-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LGG-TP/6154690/LGG-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=LGG-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=LGG-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LGG-TP/6154690/LGG-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/6165954/LGG-TP.mergedcluster.txt"

nPatients in clinical file=282, in cluster file=408, common to both=281
[1]  12 281
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
 9 10  8 
 1  2  3 
 9 10  8 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
 7  6 10  4 
 1  2  3  4 
 7  6 10  4 
[1] "CN_CNMF"
[1] 3
  1   2   3 
109  63 104 
  1   2   3 
109  63 104 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3   4 
125  43  76  32 
  1   2   3   4 
125  43  76  32 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
47 57 65 70 
 1  2  3  4 
47 57 65 70 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
  7 121 111 
  1   2   3 
  7 121 111 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5  6 
74 53 46 85  6 13 
 1  2  3  4  5  6 
74 53 46 85  6 13 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 42 136  99 
  1   2   3 
 42 136  99 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4  5 
68 53 91 17 46 
 1  2  3  4  5 
68 53 91 17 46 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
  1 154 120 
  2   3 
154 120 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3  4  5  6  7  8 
46 41 36 75 27 33  4 13 
 1  2  3  4  5  6  7  8 
46 41 36 75 27 33  4 13 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
 10 153 112 
  1   2   3 
 10 153 112 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "DCCUPLOADDATE"                         
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "KARNOFSKYPERFORMANCESCORE"             
[12] "HISTOLOGICALTYPE"                      
[13] "RADIATIONS.RADIATION.REGIMENINDICATION"
[14] "BATCHNUMBER"                           

Input Data has 14 rows and 281 columns.

[1] "Batch" "14"   
[1] "Last Follow UP"
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
         143           NA           NA          552          323         1966 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
        1222            3           NA          303           NA           NA 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
         725          546          378          257          229          243 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
         224          200         3733         2493         2289         1458 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
        2218         1419         1526         1354         1112         2381 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE 
         915          313          387          840          822          572 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64O TCGA-DB-A64P 
         559         2219          383          335          573          510 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64S TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W 
         182          488          469          845          448          415 
TCGA-DB-A64X TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
         332           NA          968          921          438          244 
TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DH-A66G TCGA-DU-5847 
          NA          900          478          237          116          547 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
         442          530           NA          407          257          207 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        5546          576          531          460         6423         1585 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
         682         1491         2286         1401           NA           37 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        2660          213           NA           NA          605           NA 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
          NA         3469          242          234           NA           NA 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
        4752         4205           NA           NA           NA           NA 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
          NA         2761           NA          800           NA           NA 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        2868           NA           NA           NA           NA         1834 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 
          NA         1277           84           NA           NA          121 
TCGA-DU-8163 TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 
         629          487          581          515          470          430 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
         433          383          460          150          110          171 
TCGA-DU-A5TY TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
         371         1525         2051         1251         2432         1762 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5962 
        4084         2378         2907         3978          436         1099 
TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 
         547         1045          979          570          453          391 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 
         729          413          467          544         1020          686 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 
         313          611          394          415          432          487 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU 
         611          454          361          472          744           18 
TCGA-FG-A4MW TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L 
         160          113          294          214          201          213 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
         127          124          322            4            3          203 
TCGA-HT-7469 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 
         238          268            4            1          503          114 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 
         530          199          194          216         2287         1800 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 
        1826         4687          121          153          907          705 
TCGA-HT-7604 TCGA-HT-7605 TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
        3283          139          526           NA          671         1399 
TCGA-HT-7610 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 
        1706         1751           NA          434            5          494 
TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 TCGA-HT-7688 
          23         1359          184         1300            3          964 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7694 
         454            3            3           90          533          210 
TCGA-HT-7695 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
         442         1201          585         1189            7         1540 
TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 
          15          718         1130           10            4          112 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
         162           89           51          343          955           50 
TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 
         494          286           NA          654         1004          372 
TCGA-HT-8105 TCGA-HT-8106 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 
         190            3           14           76          120          142 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HT-8558 TCGA-HT-8563 TCGA-HT-8564 
           7          900          118           52          487          477 
TCGA-HT-A4DS TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-HT-A5RB 
           7          319            4            2          446            3 
TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 
          81          396           55          909          409          253 
TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-7675 TCGA-IK-8125 
         585         1222         1092          131           NA         1301 
TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-P5-A5F6 TCGA-QH-A65V TCGA-QH-A65Z TCGA-QH-A6CU 
         204          179           39          146          124           NA 
TCGA-S9-A6TU TCGA-S9-A6TZ TCGA-S9-A6U8 TCGA-S9-A6UB TCGA-S9-A6WL 
        2101          657         2878         3155          331 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=217,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'BATCH.NUMBER':	nDistinctValues=17,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 281 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 7 3
  subtype3 5 3
subtype1 subtype2 subtype3 
       9       10        8 
subtype1 subtype2 subtype3 
       4        3        3 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        18.15        10.62        81.96        36.56        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DH-5140 
       64.64         0.10         9.96        75.25        47.93        19.96 
TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       31.82         8.02        41.13        78.18 

$subtype3
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 
       20.98       122.73        72.92        46.65        50.17        78.28 
TCGA-DH-5143 TCGA-E1-5311 
       14.40       134.27 

subtype1 subtype2 subtype3 
   10.62     0.10    14.40 
subtype1 subtype2 subtype3 
  130.78    78.18   134.27 
subtype1 subtype2 subtype3 
  43.890   36.475   61.545 
[1] "10.6 - 130.8 (43.9)" "0.1 - 78.2 (36.5)"   "14.4 - 134.3 (61.5)"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 6 4
  subtype3 1 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    6    4
  subtype3    1    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        6        1
  MALE          7        4        7
D1V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           7                2                 0
  subtype2           2                3                 5
  subtype3           1                4                 3
D1V5, multiclass
D1V6, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 8 2
  subtype3 5 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    8    2
  subtype3    5    3
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8        5
  YES        2        2        3

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2      0 1
  subtype1 6 1
  subtype2 5 1
  subtype3 5 5
  subtype4 1 3
subtype1 subtype2 subtype3 subtype4 
       7        6       10        4 
subtype1 subtype2 subtype3 subtype4 
       1        1        5        3 
$subtype1
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DH-5141 TCGA-DH-5144 
       64.64         0.10         9.96        75.25        31.82         8.02 
TCGA-E1-5318 
       78.18 

$subtype2
TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 TCGA-E1-5311 
      122.73        72.92        50.17        78.28        14.40       134.27 

$subtype3
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5395 TCGA-DB-5273 TCGA-DB-5280 
       43.89        18.15        10.62        20.98        81.96        36.56 
TCGA-DH-5142 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       30.28        50.14        67.43       130.78 

$subtype4
TCGA-DB-5275 TCGA-DB-5277 TCGA-DH-5140 TCGA-E1-5304 
       47.93        46.65        19.96        41.13 

subtype1 subtype2 subtype3 subtype4 
    0.10    14.40    10.62    19.96 
subtype1 subtype2 subtype3 subtype4 
   78.18   134.27   130.78    47.93 
subtype1 subtype2 subtype3 subtype4 
  31.820   75.600   40.225   43.890 
[1] "0.1 - 78.2 (31.8)"   "14.4 - 134.3 (75.6)" "10.6 - 130.8 (40.2)"
[4] "20.0 - 47.9 (43.9)" 
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[13] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
[25] "subtype2" "subtype1" "subtype3"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[13] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
[25] "subtype2" "subtype1" "subtype3"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[13] "subtype4" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
[25] "subtype2" "subtype1" "subtype3"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 5 2
  subtype2 1 5
  subtype3 2 8
  subtype4 1 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    2
  subtype2    1    5
  subtype3    2    8
  subtype4    1    3
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        5        1        2        1
  MALE          2        5        8        3
D2V4, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 
       5        2        8        2 
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[13] "subtype3"
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           1                1                 5
  subtype2           0                4                 2
  subtype3           7                2                 1
  subtype4           2                2                 0
D2V5, multiclass
D2V6, binary
          cls
clus       0 1
  subtype1 5 2
  subtype2 3 3
  subtype3 8 2
  subtype4 4 0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    2
  subtype2    3    3
  subtype3    8    2
  subtype4    4    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        3        8        4
  YES        2        3        2        0

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 93 16
  subtype2 35 28
  subtype3 88 15
subtype1 subtype2 subtype3 
     109       63      103 
subtype1 subtype2 subtype3 
      16       28       15 
$subtype1
TCGA-CS-4938 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        4.70        18.15        40.18        17.95        12.43         8.45 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
        7.53         7.36        81.96        47.93        72.92        46.65 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XC TCGA-DB-A4XD TCGA-DB-A4XE TCGA-DB-A4XF 
       36.56        78.28        27.62        27.02        18.81        18.38 
TCGA-DB-A64S TCGA-DB-A64X TCGA-DH-5143 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G 
       15.42        10.92        14.40        29.59        15.72         3.81 
TCGA-DU-5853 TCGA-DU-5871 TCGA-DU-6396 TCGA-DU-6401 TCGA-DU-6542 TCGA-DU-7007 
       13.38        18.94        75.16        87.45         7.69        62.96 
TCGA-DU-7008 TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7019 TCGA-DU-7299 TCGA-DU-7304 
      156.23       105.21       117.40        26.30        43.99        23.31 
TCGA-DU-7309 TCGA-DU-8167 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-E1-5302 
        2.76        15.45        12.59        15.12         3.62        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5307 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6689 
       67.43        41.13        57.93        17.98        32.19        14.89 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 
       12.85        23.97        12.95        13.64        14.20        14.93 
TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A4MY TCGA-FG-A60L TCGA-FN-7833 TCGA-HT-7470 
       11.87        15.52         9.67         7.00         0.13         8.81 
TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 
       16.54         3.75         6.54         6.38         7.10        60.03 
TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7611 
        3.98        29.82        23.18       107.93        17.29        57.57 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 
        0.16         0.76         6.05        42.74        31.69        14.93 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 
        0.10         0.10        17.52        39.48        19.23         0.23 
TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7882 TCGA-HT-7884 
       50.63        23.61         3.68         5.33         1.68        11.28 
TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8106 TCGA-HT-8107 
       31.40        63.55        21.50        33.01         0.10         0.46 
TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A616 
        0.23         3.88         0.13         0.10         2.66         1.81 
TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-P5-A5F6 
        8.32        19.23        35.90         6.71         5.88         1.28 
TCGA-S9-A6TU 
       69.07 

$subtype2
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        7.69        43.89        20.98         6.38        17.69        23.84 
TCGA-DB-5270 TCGA-DB-A4X9 TCGA-DB-A64O TCGA-DH-5140 TCGA-DH-A669 TCGA-DU-5847 
      122.73        30.08        18.84        19.96        30.18        17.98 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 
        6.74         8.45         6.81        17.46       211.17        49.02 
TCGA-DU-6399 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       65.72         7.00        11.64       133.74        19.89        16.80 
TCGA-DU-6407 TCGA-DU-6410 TCGA-DU-7006 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 
       94.52         7.96        11.47        14.99         6.51         8.84 
TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7301 TCGA-DU-7306 
       90.77        10.36         7.96        18.90        25.91        41.98 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
        5.10        23.74         3.98        20.68        19.10        16.93 
TCGA-DU-A5TT TCGA-DU-A5TW TCGA-DU-A5TY TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 
        4.93         5.62        12.20        18.74        13.58        20.09 
TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 TCGA-HT-7475 TCGA-HT-7610 TCGA-HT-7860 
        0.59         5.26        10.59        17.42        56.09         0.49 
TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS 
       16.24        12.23         2.50         4.67        15.68         0.23 
TCGA-HT-A5R9 TCGA-HT-A5RA TCGA-IK-7675 
        0.07        14.66        18.97 

$subtype3
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 
       10.62        64.64         0.10         9.96         7.99         6.58 
TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XG 
       75.25        50.17        44.52        10.29        12.72        72.95 
TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U 
       12.59        11.01        16.77         5.98        16.04        27.78 
TCGA-DB-A64V TCGA-DB-A64W TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 TCGA-DH-A66F 
       14.73        13.64        31.82        30.28         8.02         7.79 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       14.53        17.42       182.33        15.12        52.11        22.42 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6408 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       46.06         1.22       114.05       138.25        30.67        94.29 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8164 TCGA-DU-8168 TCGA-DU-A5TP TCGA-E1-5305 
       62.01        60.30        16.01        14.14        14.24        79.96 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5962 
      134.27        78.18        95.57       130.78        14.33        36.13 
TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 
       34.36        15.35        17.88        22.55        10.29        16.01 
TCGA-FG-8187 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A6IZ 
       20.09        24.46         3.72         7.04         6.61         4.18 
TCGA-FG-A6J1 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 
        4.08         0.10         6.67         7.82         0.13         0.03 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7605 TCGA-HT-7607 
       75.19        59.18       154.09         5.03         4.57         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7681 
       22.06        45.99         0.23        14.27        16.24        44.68 
TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 
        0.10         2.96         6.90        14.53        39.09        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8105 
        0.33         0.13         2.93         1.64         9.40         6.25 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8563 TCGA-HT-A4DV TCGA-HT-A615 TCGA-HW-7486 
        3.95        29.59        16.01        10.49        13.02        29.88 
TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-IK-8125 TCGA-QH-A65V TCGA-QH-A65Z 
       13.45        40.18         4.31        42.77         4.80         4.08 
TCGA-S9-A6TZ 
       21.60 

subtype1 subtype2 subtype3 
    0.10     0.07     0.03 
subtype1 subtype2 subtype3 
  156.23   211.17   182.33 
subtype1 subtype2 subtype3 
   15.45    16.24    14.73 
[1] "0.1 - 156.2 (15.4)" "0.1 - 211.2 (16.2)" "0.0 - 182.3 (14.7)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[241] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[241] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[241] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 39 70
  subtype2 39 24
  subtype3 49 55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   70
  subtype2   39   24
  subtype3   49   55
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       39       49
  MALE         70       24       55
D3V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          48               37                24
  subtype2          28               21                14
  subtype3          12               18                74
D3V5, multiclass
D3V6, binary
          cls
clus        0  1
  subtype1 38 71
  subtype2 21 42
  subtype3 30 74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38   71
  subtype2   21   42
  subtype3   30   74
     clus
vv    subtype1 subtype2 subtype3
  NO        38       21       30
  YES       71       42       74

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2        0   1
  subtype1 102  23
  subtype2  23  20
  subtype3  67   9
  subtype4  28   3
subtype1 subtype2 subtype3 subtype4 
     125       43       76       31 
subtype1 subtype2 subtype3 subtype4 
      23       20        9        3 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-6290 
        4.70        43.89        18.15        10.62        40.18        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 
       12.43         8.45         7.53        81.96        47.93        46.65 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC TCGA-DB-A4XD 
       36.56        78.28        30.08        12.72        27.62        27.02 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DH-5142 TCGA-DH-5143 
       18.81        18.38        15.42        10.92        30.28        14.40 
TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66G TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 
       29.59        15.72         3.81        17.42        13.38         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 
       18.94        17.46        49.02        75.16        65.72        87.45 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 
       94.52       114.05         7.69        62.96       156.23        14.99 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 
      117.40        90.77        26.30        43.99        25.91        23.31 
TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-A5TP 
       41.98         2.76        20.68        16.93        15.45        14.24 
TCGA-DU-A5TR TCGA-DU-A5TS TCGA-DU-A5TU TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5303 
       12.59        15.12         3.62         5.62        50.14        67.43 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-FG-5965 TCGA-FG-6689 
       41.13        79.96        57.93       130.78        32.19        14.89 
TCGA-FG-6690 TCGA-FG-7636 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 
       12.85        17.88        13.64        14.20        14.93        15.52 
TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 
       24.46         3.72         9.67         7.04         7.00        10.59 
TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 
        0.13         8.81         0.03        16.54         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 
        6.54         6.38        60.03       154.09         3.98         5.03 
TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7611 
       23.18       107.93        17.29        45.99        56.09        57.57 
TCGA-HT-7676 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
        0.16         6.05        42.74        31.69        14.93         0.10 
TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7884 
       17.52        19.23        50.63        23.61         3.68        11.28 
TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 TCGA-HT-A5RB 
       63.55         2.50         0.23         3.88        16.01         0.10 
TCGA-HT-A614 TCGA-HT-A616 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 TCGA-IK-7675 
        2.66         1.81         8.32        19.23        35.90        18.97 
TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-S9-A6TU TCGA-S9-A6TZ TCGA-S9-A6U8 
        6.71         5.88        69.07        21.60        94.62 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DB-A64O 
        7.69        20.98         6.38        17.69        23.84        18.84 
TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6403 
       19.96        17.98         6.74         8.45       211.17        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 
      133.74        19.89        16.80        11.47         6.51         8.84 
TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8162 TCGA-DU-8165 
       10.36         7.96         5.10        23.74         3.98        19.10 
TCGA-DU-A5TT TCGA-DU-A5TY TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-A4MU TCGA-FG-A4MW 
        4.93        12.20        18.74        13.58         0.59         5.26 
TCGA-HT-7469 TCGA-HT-7691 TCGA-HT-7854 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 
        7.82         0.10        39.48         0.23         0.49         1.68 
TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8564 TCGA-HT-A4DS 
       16.24        12.23         0.10         4.67        15.68         0.23 
TCGA-HT-A5RA 
       14.66 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.64         0.10         9.96         7.99         6.58        75.25 
TCGA-DB-5279 TCGA-DB-A4XA TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64P 
       44.52        10.29        72.95        12.59        11.01        16.77 
TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64V TCGA-DB-A64W TCGA-DH-5141 
        5.98        16.04        27.78        14.73        13.64        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 
        8.02        30.18         7.79        14.53       182.33        15.12 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       52.11         1.22         7.96       138.25        30.67        94.29 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8164 TCGA-DU-8168 TCGA-E1-5311 TCGA-E1-5318 
       62.01        60.30        16.01        14.14       134.27        78.18 
TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7637 
       95.57        14.33        36.13        34.36        15.35        33.53 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-A60K TCGA-FG-A6IZ 
       22.55        10.29        16.01        20.09         6.61         4.18 
TCGA-FG-A6J1 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 
        4.08         6.67         0.13        75.19        59.18         4.57 
TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 
        0.23        16.24         0.10         2.96         6.90        14.53 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HT-A5R9 
        0.33         0.13         9.40         6.25         3.95         0.07 
TCGA-HT-A615 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-IK-8125 
       13.02        29.88        13.45        40.18         4.31        42.77 
TCGA-QH-A65V TCGA-QH-A65Z TCGA-S9-A6UB TCGA-S9-A6WL 
        4.80         4.08       103.73        10.88 

$subtype4
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DU-7298 TCGA-FG-5963 
        7.36       122.73        72.92        50.17        18.90        17.98 
TCGA-FG-6691 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8189 TCGA-HT-7467 TCGA-HT-7479 
       23.97        20.09        12.95        11.87         0.10         7.10 
TCGA-HT-7602 TCGA-HT-7607 TCGA-HT-7620 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7856 
       29.82         3.16        14.27         0.76        44.68        39.09 
TCGA-HT-7874 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8018 
       37.15         5.33         2.93        31.40         1.64        21.50 
TCGA-HT-8019 TCGA-HT-8107 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-A4DV TCGA-HT-A5R5 
       33.01         0.46        29.59         1.71        10.49         0.13 
TCGA-P5-A5F6 
        1.28 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.07     0.10 
subtype1 subtype2 subtype3 subtype4 
  156.23   211.17   182.33   122.73 
subtype1 subtype2 subtype3 subtype4 
   17.46    11.47    14.43    14.27 
[1] "0.0 - 156.2 (17.5)" "0.1 - 211.2 (11.5)" "0.1 - 182.3 (14.4)"
[4] "0.1 - 122.7 (14.3)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype4" "subtype3" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[199] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
[223] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[235] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[247] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[265] "subtype3" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype4" "subtype3" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[199] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
[223] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[235] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[247] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[265] "subtype3" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype4" "subtype3" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[163] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype1"
[199] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
[223] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[235] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype3"
[241] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[247] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[265] "subtype3" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 49 76
  subtype2 25 18
  subtype3 35 41
  subtype4 19 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49   76
  subtype2   25   18
  subtype3   35   41
  subtype4   19   13
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       49       25       35       19
  MALE         76       18       41       13
D4V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          55               45                25
  subtype2          26               10                 7
  subtype3           2               12                62
  subtype4           6                8                18
D4V5, multiclass
D4V6, binary
          cls
clus        0  1
  subtype1 49 76
  subtype2 14 29
  subtype3 15 61
  subtype4  7 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49   76
  subtype2   14   29
  subtype3   15   61
  subtype4    7   25
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        49       14       15        7
  YES       76       29       61       25

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 42  5
  subtype2 28 29
  subtype3 55 10
  subtype4 59 11
subtype1 subtype2 subtype3 subtype4 
      47       57       65       70 
subtype1 subtype2 subtype3 subtype4 
       5       29       10       11 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-5273 
        4.70        43.89        17.69        23.84        12.43        81.96 
TCGA-DB-5276 TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DH-5143 TCGA-DU-5874 TCGA-DU-6395 
       72.92        18.38        12.59        14.40        15.12        49.02 
TCGA-DU-7304 TCGA-DU-8163 TCGA-DU-A5TR TCGA-DU-A5TS TCGA-E1-5302 TCGA-FG-6688 
       23.31        20.68        12.59        15.12        50.14        18.74 
TCGA-FG-6691 TCGA-FG-8182 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8191 
       23.97        13.64        16.01        20.09        14.93        15.52 
TCGA-FG-A4MW TCGA-FG-A60J TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7602 
        5.26         7.04         7.10        60.03         3.98        29.82 
TCGA-HT-7611 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7691 
       57.57        14.27         0.16         0.76        44.68         0.10 
TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-8111 
        2.96        17.52        39.48        23.61         3.68         0.23 
TCGA-HT-8114 TCGA-HT-A5R5 TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-P5-A5F6 
        3.88         0.13         6.71         5.88         1.28 

$subtype2
TCGA-CS-4943 TCGA-CS-5397 TCGA-CS-6666 TCGA-DB-5277 TCGA-DB-A4XG TCGA-DH-5140 
       18.15         6.38         8.45        46.65        72.95        19.96 
TCGA-DH-5142 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-6393 
       30.28        17.98         6.74         8.45         6.81        52.11 
TCGA-DU-6394 TCGA-DU-6396 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
       22.42        75.16         7.00        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
       16.80       114.05         7.96         7.69        11.47        62.96 
TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-7301 
      156.23        14.99         6.51         8.84        10.36        25.91 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-8168 TCGA-DU-A5TT TCGA-DU-A5TU 
        5.10        23.74        19.10        14.14         4.93         3.62 
TCGA-DU-A5TY TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-5322 TCGA-FG-7636 TCGA-FG-8185 
       12.20        41.13        78.18       130.78        17.88        14.20 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-HT-7469 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7857 
       24.46         0.59         7.82       107.93        17.29         0.23 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8013 TCGA-HT-8104 
        0.49         1.68        16.24         9.40        63.55        12.23 
TCGA-HT-A5R9 TCGA-HW-7491 TCGA-IK-7675 
        0.07        40.18        18.97 

$subtype3
TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 
       10.62        40.18         0.10         9.96         7.99         6.58 
TCGA-DB-5275 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XC 
       47.93        44.52        36.56        78.28        10.29        27.62 
TCGA-DB-A4XD TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-5853 TCGA-DU-5870 TCGA-DU-5871 
       27.02        31.82         8.02        13.38       182.33        18.94 
TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       17.46       211.17        46.06        65.72        87.45        94.52 
TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7306 
      105.21       117.40        90.77        30.67        26.30        41.98 
TCGA-DU-8167 TCGA-DU-A5TW TCGA-E1-5303 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5964 
       15.45         5.62        67.43        95.57        14.33        34.36 
TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-A4MX TCGA-FG-A4MY 
       15.35        33.53        22.55        10.29         3.72         9.67 
TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7483 
        6.67         0.03        16.54         6.54         6.38       154.09 
TCGA-HT-7601 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7684 
        5.03        22.06        45.99         0.23        16.24         6.05 
TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7875 TCGA-HT-8105 
       42.74        14.93        19.23        50.63         0.33         6.25 
TCGA-HT-8106 TCGA-HT-8110 TCGA-HW-7489 TCGA-HW-7490 TCGA-IK-8125 
        0.10         4.67         8.32        19.23        42.77 

$subtype4
TCGA-CS-5390 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-A4X9 
       64.64         7.36       122.73        75.25        50.17        30.08 
TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6400 TCGA-DU-7009 
       12.72        18.81        14.53        17.42         1.22       138.25 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7309 
        7.96        94.29        18.90        62.01        60.30         2.76 
TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-A5TP TCGA-E1-5305 TCGA-E1-5307 
        3.98        16.01        16.93        14.24        79.96        57.93 
TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 
      134.27        36.13        17.98        32.19        14.89        12.85 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8189 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 
       20.09        12.95        11.87         0.10         8.81         0.13 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7603 TCGA-HT-7605 
        3.75        17.42        75.19        59.18        23.18         4.57 
TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7694 
        3.16        56.09         0.10        31.69         0.10         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 
       14.53        39.09        37.15         0.13         5.33         2.93 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 
       11.28        31.40         1.64        21.50        33.01         0.46 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5RB 
        3.95        29.59         1.71        15.68        10.49         0.10 
TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7493 TCGA-HW-7495 
       29.88        13.45        35.90         4.31 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.07     0.03     0.10 
subtype1 subtype2 subtype3 subtype4 
   81.96   156.23   211.17   138.25 
subtype1 subtype2 subtype3 subtype4 
  15.120   16.240   19.230   15.845 
[1] "0.1 - 82.0 (15.1)"  "0.1 - 156.2 (16.2)" "0.0 - 211.2 (19.2)"
[4] "0.1 - 138.2 (15.8)"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
 [19] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [31] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
 [43] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
 [97] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[151] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
[157] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
[163] "subtype3" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[169] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype1"
[187] "subtype1" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[193] "subtype4" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[205] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[211] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype4"
[217] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
[223] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
[229] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
[235] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
 [19] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [31] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
 [43] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
 [97] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[151] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
[157] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
[163] "subtype3" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[169] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype1"
[187] "subtype1" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[193] "subtype4" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[205] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[211] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype4"
[217] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
[223] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
[229] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
[235] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
 [19] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [31] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype4"
 [43] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
 [97] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[151] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
[157] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
[163] "subtype3" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[169] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype1"
[187] "subtype1" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[193] "subtype4" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[205] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[211] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype4"
[217] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype4"
[223] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
[229] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
[235] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 17 30
  subtype2 33 24
  subtype3 20 45
  subtype4 36 34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   30
  subtype2   33   24
  subtype3   20   45
  subtype4   36   34
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       33       20       36
  MALE         30       24       45       34
D5V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          16               21                10
  subtype2          27               11                19
  subtype3          17               20                28
  subtype4          13               17                40
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 15 32
  subtype2 20 37
  subtype3 30 35
  subtype4 19 51
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   32
  subtype2   20   37
  subtype3   30   35
  subtype4   19   51
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        15       20       30       19
  YES       32       37       35       51

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1  6  1
  subtype2 83 38
  subtype3 95 16
subtype1 subtype2 subtype3 
       7      121      111 
subtype1 subtype2 subtype3 
       1       38       16 
$subtype1
TCGA-E1-5303 TCGA-HT-7471 TCGA-HT-7478 TCGA-HT-7480 TCGA-HT-7874 TCGA-HT-8105 
       67.43         0.13         6.38        75.19        37.15         6.25 
TCGA-HW-7489 
        8.32 

$subtype2
TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-5397 
       18.15        10.62        40.18         0.10         9.96         6.38 
TCGA-CS-6188 TCGA-CS-6666 TCGA-CS-6668 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 
       23.84         8.45         7.99        81.96        47.93        46.65 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XC TCGA-DB-A4XD 
       44.52        36.56        78.28        10.29        27.62        27.02 
TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 
       18.38        72.95        19.96        31.82        30.28         8.02 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
       17.98         6.74         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6396 
       17.46        15.12       211.17        52.11        22.42        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       46.06        65.72         1.22        87.45         7.00        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
      133.74        19.89        16.80        94.52       114.05         7.96 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7011 TCGA-DU-7012 
        7.69        11.47        62.96       156.23       105.21         6.51 
TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 
        8.84       117.40        90.77        30.67        26.30        10.36 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
       25.91        23.31        41.98         5.10        23.74        19.10 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-E1-5302 
       12.59         4.93         3.62         5.62        12.20        50.14 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5964 TCGA-FG-6691 
       78.18        95.57       130.78        14.33        34.36        23.97 
TCGA-FG-7637 TCGA-FG-8185 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       33.53        14.20        24.46         0.59         5.26         3.72 
TCGA-FG-A4MY TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7476 
        9.67         6.67         7.82         0.03        16.54         6.54 
TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 
      154.09         5.03       107.93        17.29        22.06        45.99 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7691 
       57.57         0.23        16.24         6.05        42.74         0.10 
TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7875 
       17.52        19.23         0.23        50.63         0.49         0.33 
TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8012 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8110 
        1.68        16.24         9.40        12.23         0.10         4.67 
TCGA-HT-8114 TCGA-HT-A5R9 TCGA-HW-7490 TCGA-HW-7491 TCGA-IK-7675 TCGA-IK-8125 
        3.88         0.07        19.23        40.18        18.97        42.77 
TCGA-P5-A5F6 
        1.28 

$subtype3
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-5390 TCGA-CS-6186 TCGA-CS-6665 TCGA-CS-6669 
        4.70        43.89        64.64        17.69        12.43         7.36 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-A4X9 
        6.58       122.73        75.25        72.92        50.17        30.08 
TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DB-A4XH TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 
       12.72        18.81        12.59        14.40        14.53        17.42 
TCGA-DU-5853 TCGA-DU-6395 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7292 TCGA-DU-7294 
       13.38        49.02       138.25        14.99         7.96        94.29 
TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 
       18.90        62.01        60.30         2.76         3.98        20.68 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TP TCGA-DU-A5TS 
       16.01        16.93        15.45        14.14        14.24        15.12 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5963 
       41.13        79.96        57.93       134.27        36.13        17.98 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-7634 TCGA-FG-7636 
       32.19        18.74        14.89        12.85        15.35        17.88 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8186 
       22.55        10.29        20.09        12.95        13.64        16.01 
TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8189 TCGA-FG-8191 TCGA-FG-A60J TCGA-HT-7467 
       20.09        14.93        11.87        15.52         7.04         0.10 
TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7479 TCGA-HT-7481 TCGA-HT-7482 
        8.81         3.75        17.42         7.10        59.18        60.03 
TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 
        3.98        29.82        23.18         4.57         3.16        56.09 
TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 
       14.27         0.16         0.76        44.68         0.10        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7854 
       14.93         0.10         2.96         6.90        14.53        39.48 
TCGA-HT-7856 TCGA-HT-7873 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 TCGA-HT-7881 
       39.09        23.61         0.13         3.68         5.33         2.93 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 
       11.28        31.40         1.64        63.55        21.50        33.01 
TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 
        0.46         3.95         0.23        29.59         1.71        15.68 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7493 
       10.49         0.13         0.10        29.88        13.45        35.90 
TCGA-HW-7495 TCGA-P5-A5EW TCGA-P5-A5F1 
        4.31         6.71         5.88 

subtype1 subtype2 subtype3 
    0.13     0.03     0.10 
subtype1 subtype2 subtype3 
   75.19   211.17   138.25 
subtype1 subtype2 subtype3 
    8.32    18.15    14.99 
[1] "0.1 - 75.2 (8.3)"   "0.0 - 211.2 (18.1)" "0.1 - 138.2 (15.0)"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1  2  5
  subtype2 53 68
  subtype3 51 60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    5
  subtype2   53   68
  subtype3   51   60
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2       53       51
  MALE          5       68       60
D6V4, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 
       1       55       51 
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2"
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           2                1                 4
  subtype2          45               32                44
  subtype3          26               36                49
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1  4  3
  subtype2 46 75
  subtype3 34 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4    3
  subtype2   46   75
  subtype3   34   77
     clus
vv    subtype1 subtype2 subtype3
  NO         4       46       34
  YES        3       75       77

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 59 15
  subtype2 34 19
  subtype3 37  9
  subtype4 74 11
  subtype5  1  5
  subtype6 12  0
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      74       53       46       85        6       12 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      15       19        9       11        5        0 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        4.70        43.89        18.15        17.95         8.45         7.53 
TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5280 TCGA-DB-A4X9 TCGA-DB-A4XD TCGA-DB-A64S 
       81.96        47.93        36.56        30.08        27.02        15.42 
TCGA-DB-A64X TCGA-DH-5142 TCGA-DH-A66B TCGA-DH-A66D TCGA-DU-5853 TCGA-DU-5855 
       10.92        30.28        29.59        15.72        13.38         6.81 
TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       18.94        17.46        49.02        65.72        87.45        94.52 
TCGA-DU-6408 TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7299 TCGA-DU-7301 
      114.05       105.21       117.40        90.77        43.99        25.91 
TCGA-DU-7306 TCGA-DU-8163 TCGA-DU-8167 TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5303 
       41.98        20.68        15.45         5.62        50.14        67.43 
TCGA-E1-5322 TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-8182 
      130.78        32.19        12.85        23.97        17.88        13.64 
TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FG-A4MY 
       14.20        14.93        15.52        24.46         3.72         9.67 
TCGA-FG-A60J TCGA-FG-A60L TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 
        7.04         7.00         0.13         0.03        16.54         6.38 
TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7604 TCGA-HT-7609 TCGA-HT-7611 
        7.10        60.03         3.98       107.93        45.99        57.57 
TCGA-HT-7676 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7873 TCGA-HT-7879 
        0.16        17.52        19.23        50.63        23.61         3.68 
TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8114 TCGA-HW-7490 TCGA-P5-A5EW TCGA-P5-A5F1 
       63.55         2.50         3.88        19.23         6.71         5.88 
TCGA-S9-A6TU TCGA-S9-A6TZ 
       69.07        21.60 

$subtype2
TCGA-CS-4941 TCGA-CS-4944 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-A64O 
        7.69        10.62        17.69        23.84        12.43        18.84 
TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6396 
       19.96        17.98         6.74         8.45       211.17        75.16 
TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7007 
        7.00       133.74        19.89        16.80        11.47        62.96 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
        6.51         8.84        10.36         5.10        23.74        19.10 
TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TY TCGA-FG-5963 
       14.24        12.59         4.93         3.62        12.20        17.98 
TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A6J3 TCGA-HT-7469 
       18.74        13.58         0.59         5.26        10.59         7.82 
TCGA-HT-7601 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7691 TCGA-HT-7854 
        5.03         0.76         6.05        42.74         0.10        39.48 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8106 
        0.23         0.49         1.68        16.24        12.23         0.10 
TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-P5-A5F6 
        4.67        16.01         0.23        14.66         1.28 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-A4XA 
       64.64         0.10         9.96         7.99        75.25        10.29 
TCGA-DB-A4XH TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64U TCGA-DH-5141 
       12.59        16.77         5.98        16.04        27.78        31.82 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 
        8.02        30.18         7.79       182.33        15.12        52.11 
TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8168 
       22.42        46.06         1.22        30.67        94.29        14.14 
TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8186 
       78.18        95.57        14.33        15.35        33.53        16.01 
TCGA-FG-A60K TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7608 
        6.61         4.18         4.08         6.67         0.13        22.06 
TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-8012 TCGA-HT-8105 
        0.23        16.24         0.10         2.96         9.40         6.25 
TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HW-7491 TCGA-QH-A65Z 
        0.07        13.02        40.18         4.08 

$subtype4
TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       40.18        20.98         6.38         7.36         6.58       122.73 
TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4XB TCGA-DB-A4XC 
       72.92        50.17        44.52        78.28        12.72        27.62 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A64L TCGA-DB-A64W TCGA-DH-5143 
       18.81        18.38        72.95        11.01        13.64        14.40 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 
       14.53        17.42         7.96         7.69       156.23       138.25 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 
       26.30         7.96        18.90        62.01        60.30        23.31 
TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 TCGA-E1-5305 TCGA-E1-5307 
        2.76         3.98        16.01        16.93        79.96        57.93 
TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7638 TCGA-FG-7641 
      134.27        36.13        34.36        14.89        22.55        10.29 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8189 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 
       20.09        12.95        11.87         0.10         8.81         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 
       17.42         6.54        75.19        59.18       154.09        23.18 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7681 TCGA-HT-7688 TCGA-HT-7690 
        4.57         3.16        56.09        44.68        31.69         0.10 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        6.90        14.53        39.09        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 
        5.33         2.93         1.64        21.50        33.01         0.46 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 
        3.95        29.59         1.71        15.68        10.49         0.13 
TCGA-HT-A5RB TCGA-HT-A616 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 
        0.10         1.81        13.45         8.32        35.90         4.31 
TCGA-IK-8125 
       42.77 

$subtype5
TCGA-DB-5277 TCGA-DU-6403 TCGA-DU-7010 TCGA-E1-5304 TCGA-HT-7606 TCGA-IK-7675 
       46.65        11.64        14.99        41.13        17.29        18.97 

$subtype6
TCGA-DB-A64V TCGA-DU-A5TS TCGA-FG-8187 TCGA-HT-7602 TCGA-HT-7620 TCGA-HT-7689 
       14.73        15.12        20.09        29.82        14.27        14.93 
TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8111 TCGA-HT-A614 TCGA-HW-7486 TCGA-QH-A65V 
       11.28        31.40         0.23         2.66        29.88         4.80 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.03     0.10     0.07     0.10    11.64     0.23 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  130.78   211.17   182.33   156.23    46.65    31.40 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  19.085   11.470   14.235   16.010   18.130   14.830 
[1] "0.0 - 130.8 (19.1)" "0.1 - 211.2 (11.5)" "0.1 - 182.3 (14.2)"
[4] "0.1 - 156.2 (16.0)" "11.6 - 46.6 (18.1)" "0.2 - 31.4 (14.8)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype5" "subtype4" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype6" "subtype4"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype5" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype5" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype6" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype1" "subtype5" "subtype4" "subtype4" "subtype4"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[139] "subtype4" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype6"
[157] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype4" "subtype3" "subtype2"
[175] "subtype4" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[181] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[187] "subtype4" "subtype1" "subtype2" "subtype6" "subtype4" "subtype1"
[193] "subtype4" "subtype5" "subtype4" "subtype3" "subtype1" "subtype4"
[199] "subtype1" "subtype3" "subtype6" "subtype1" "subtype3" "subtype2"
[205] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype6"
[211] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[217] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype6" "subtype6" "subtype4" "subtype2"
[235] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[241] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype6"
[247] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[253] "subtype4" "subtype4" "subtype3" "subtype2" "subtype4" "subtype6"
[259] "subtype3" "subtype4" "subtype6" "subtype4" "subtype4" "subtype1"
[265] "subtype3" "subtype4" "subtype4" "subtype5" "subtype4" "subtype1"
[271] "subtype1" "subtype2" "subtype6" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype5" "subtype4" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype6" "subtype4"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype5" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype5" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype6" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype1" "subtype5" "subtype4" "subtype4" "subtype4"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[139] "subtype4" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype6"
[157] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype4" "subtype3" "subtype2"
[175] "subtype4" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[181] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[187] "subtype4" "subtype1" "subtype2" "subtype6" "subtype4" "subtype1"
[193] "subtype4" "subtype5" "subtype4" "subtype3" "subtype1" "subtype4"
[199] "subtype1" "subtype3" "subtype6" "subtype1" "subtype3" "subtype2"
[205] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype6"
[211] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[217] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype6" "subtype6" "subtype4" "subtype2"
[235] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[241] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype6"
[247] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[253] "subtype4" "subtype4" "subtype3" "subtype2" "subtype4" "subtype6"
[259] "subtype3" "subtype4" "subtype6" "subtype4" "subtype4" "subtype1"
[265] "subtype3" "subtype4" "subtype4" "subtype5" "subtype4" "subtype1"
[271] "subtype1" "subtype2" "subtype6" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype5" "subtype4" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype6" "subtype4"
 [49] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype5" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype5" "subtype1" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype6" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype1" "subtype5" "subtype4" "subtype4" "subtype4"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[139] "subtype4" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype6"
[157] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype4" "subtype3" "subtype2"
[175] "subtype4" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[181] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[187] "subtype4" "subtype1" "subtype2" "subtype6" "subtype4" "subtype1"
[193] "subtype4" "subtype5" "subtype4" "subtype3" "subtype1" "subtype4"
[199] "subtype1" "subtype3" "subtype6" "subtype1" "subtype3" "subtype2"
[205] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype6"
[211] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[217] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype6" "subtype6" "subtype4" "subtype2"
[235] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[241] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype6"
[247] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[253] "subtype4" "subtype4" "subtype3" "subtype2" "subtype4" "subtype6"
[259] "subtype3" "subtype4" "subtype6" "subtype4" "subtype4" "subtype1"
[265] "subtype3" "subtype4" "subtype4" "subtype5" "subtype4" "subtype1"
[271] "subtype1" "subtype2" "subtype6" "subtype3" "subtype1" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 28 46
  subtype2 30 23
  subtype3 25 21
  subtype4 36 49
  subtype5  3  3
  subtype6  5  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   46
  subtype2   30   23
  subtype3   25   21
  subtype4   36   49
  subtype5    3    3
  subtype6    5    8
D7V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          32               26                16
  subtype2          35               11                 7
  subtype3           1               10                35
  subtype4          15               25                45
  subtype5           4                1                 1
  subtype6           1                4                 8
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 29 45
  subtype2 18 35
  subtype3 10 36
  subtype4 25 60
  subtype5  5  1
  subtype6  2 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   45
  subtype2   18   35
  subtype3   10   36
  subtype4   25   60
  subtype5    5    1
  subtype6    2   11

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 34  8
  subtype2 98 37
  subtype3 85 14
subtype1 subtype2 subtype3 
      42      135       99 
subtype1 subtype2 subtype3 
       8       37       14 
$subtype1
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-A4XA 
       64.64         0.10         9.96         7.99        75.25        10.29 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64R TCGA-DB-A64V TCGA-DH-5141 TCGA-DH-5144 
       16.77         5.98        16.04        14.73        31.82         8.02 
TCGA-DH-A669 TCGA-DH-A66F TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       30.18         7.79       182.33        15.12        52.11        22.42 
TCGA-DU-6397 TCGA-DU-6410 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8168 TCGA-E1-5318 
       46.06         7.96        30.67        94.29        14.14        78.18 
TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5964 TCGA-FG-7637 TCGA-FG-8186 TCGA-FG-A60K 
       95.57        14.33        34.36        33.53        16.01         6.61 
TCGA-FG-A6IZ TCGA-FG-A6J1 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7616 TCGA-HT-7677 
        4.18         4.08         6.67         0.13         0.23        16.24 
TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-8012 TCGA-HT-A5R9 TCGA-HT-A615 TCGA-HW-7491 
        0.10         2.96         9.40         0.07        13.02        40.18 

$subtype2
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5395 
        4.70         7.69        43.89        18.15        10.62        20.98 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 
       17.69        23.84        17.95        12.43         8.45         7.53 
TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-A4XD TCGA-DB-A64O 
       81.96        47.93        46.65        36.56        27.02        18.84 
TCGA-DB-A64S TCGA-DB-A64X TCGA-DH-5140 TCGA-DH-5142 TCGA-DH-A66B TCGA-DH-A66D 
       15.42        10.92        19.96        30.28        29.59        15.72 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 
       17.98         6.74        13.38         8.45         6.81        18.94 
TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 
       17.46       211.17        49.02        75.16        65.72        87.45 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 
        7.00        11.64       133.74        19.89        16.80        94.52 
TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 
        7.69        11.47        62.96        14.99         6.51         8.84 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7301 TCGA-DU-7306 
      117.40        90.77        26.30        10.36        25.91        41.98 
TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8167 TCGA-DU-A5TP 
        5.10        23.74        20.68        19.10        15.45        14.24 
TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-E1-5302 
       12.59         4.93         3.62         5.62        12.20        50.14 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 
       67.43        41.13       130.78        17.98        32.19        18.74 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-8182 TCGA-FG-8185 
       12.85        23.97        13.58        15.35        13.64        14.20 
TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MW TCGA-FG-A4MX 
       14.93        15.52        24.46         0.59         5.26         3.72 
TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60L TCGA-FG-A6J3 TCGA-FN-7833 TCGA-HT-7469 
        9.67         7.04         7.00        10.59         0.13         7.82 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
        0.03        16.54         6.38         7.10        60.03         3.98 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7611 
        5.03        29.82       107.93        17.29        45.99        57.57 
TCGA-HT-7676 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7691 
        0.16         0.76         6.05        42.74         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       17.52        39.48        19.23         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 
       23.61         3.68         1.68        16.24        63.55        12.23 
TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
        0.10         2.50         4.67         0.23         3.88        16.01 
TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HW-7490 TCGA-IK-7675 TCGA-P5-A5EW TCGA-P5-A5F1 
        0.23        14.66        19.23        18.97         6.71         5.88 
TCGA-P5-A5F6 TCGA-S9-A6TU TCGA-S9-A6TZ 
        1.28        69.07        21.60 

$subtype3
TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5276 
       40.18         6.38         7.36         6.58       122.73        72.92 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       50.17        44.52        78.28        30.08        12.72        27.62 
TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64U 
       18.81        18.38        72.95        12.59        11.01        27.78 
TCGA-DB-A64W TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6400 TCGA-DU-6408 
       13.64        14.40        14.53        17.42         1.22       114.05 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 
      156.23       138.25       105.21         7.96        18.90        43.99 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 
       62.01        60.30        23.31         2.76         3.98        16.01 
TCGA-DU-8166 TCGA-DU-A5TS TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 
       16.93        15.12        79.96        57.93       134.27        36.13 
TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       14.89        17.88        22.55        10.29        20.09        12.95 
TCGA-FG-8187 TCGA-FG-8189 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 
       20.09        11.87         0.10         8.81         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 TCGA-HT-7605 
        6.54        75.19        59.18       154.09        23.18         4.57 
TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7681 TCGA-HT-7688 
        3.16        22.06        56.09        14.27        44.68        31.69 
TCGA-HT-7689 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 
       14.93         6.90        14.53        39.09        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 
        0.13         5.33         2.93        11.28        31.40         1.64 
TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 
       21.50        33.01         6.25         0.46         3.95        29.59 
TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A614 
        1.71        15.68        10.49         0.13         0.10         2.66 
TCGA-HT-A616 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 
        1.81        29.88        13.45         8.32        35.90         4.31 
TCGA-IK-8125 TCGA-QH-A65V TCGA-QH-A65Z 
       42.77         4.80         4.08 

subtype1 subtype2 subtype3 
    0.07     0.03     0.10 
subtype1 subtype2 subtype3 
  182.33   211.17   156.23 
subtype1 subtype2 subtype3 
   14.53    15.45    16.01 
[1] "0.1 - 182.3 (14.5)" "0.0 - 211.2 (15.4)" "0.1 - 156.2 (16.0)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[235] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[235] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[235] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 22 20
  subtype2 60 76
  subtype3 45 54
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   20
  subtype2   60   76
  subtype3   45   54
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       22       60       45
  MALE         20       76       54
D8V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           1                7                34
  subtype2          69               40                27
  subtype3          18               30                51
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1 11 31
  subtype2 51 85
  subtype3 27 72
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   31
  subtype2   51   85
  subtype3   27   72
     clus
vv    subtype1 subtype2 subtype3
  NO        11       51       27
  YES       31       85       72

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 51 16
  subtype2 39 14
  subtype3 79 12
  subtype4 14  3
  subtype5 33 13
subtype1 subtype2 subtype3 subtype4 subtype5 
      67       53       91       17       46 
subtype1 subtype2 subtype3 subtype4 subtype5 
      16       14       12        3       13 
$subtype1
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-6186 
        4.70         7.69        43.89        10.62        20.98        17.69 
TCGA-CS-6666 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5280 TCGA-DB-A4XA TCGA-DB-A4XD 
        8.45        75.25        72.92        36.56        10.29        27.02 
TCGA-DB-A64O TCGA-DB-A64V TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-A66F TCGA-DU-5847 
       18.84        14.73        19.96        31.82         7.79        17.98 
TCGA-DU-5855 TCGA-DU-6396 TCGA-DU-6542 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7290 
        6.81        75.16         7.69         6.51       117.40        10.36 
TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 TCGA-DU-A5TT 
       25.91        41.98         5.10        23.74        19.10         4.93 
TCGA-DU-A5TW TCGA-DU-A5TY TCGA-E1-5302 TCGA-E1-5318 TCGA-E1-5319 TCGA-FG-6691 
        5.62        12.20        50.14        78.18        95.57        23.97 
TCGA-FG-7634 TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MY TCGA-FG-A60K 
       15.35        14.93        15.52        24.46         9.67         6.61 
TCGA-FG-A60L TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
        7.00         0.13         0.03         7.10        60.03         3.98 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7616 
        5.03        29.82        17.29        22.06        45.99         0.23 
TCGA-HT-7680 TCGA-HT-7689 TCGA-HT-7855 TCGA-HT-7860 TCGA-HT-8011 TCGA-HT-8104 
        0.76        14.93        19.23         0.49        16.24        12.23 
TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HW-7490 TCGA-P5-A5EW TCGA-P5-A5F1 
        4.67        16.01         0.23        19.23         6.71         5.88 
TCGA-P5-A5F6 
        1.28 

$subtype2
TCGA-CS-4943 TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-A4XE 
       18.15        23.84        12.43        81.96        47.93        18.81 
TCGA-DB-A4XF TCGA-DB-A64S TCGA-DB-A64X TCGA-DH-5142 TCGA-DH-A66B TCGA-DH-A66D 
       18.38        15.42        10.92        30.28        29.59        15.72 
TCGA-DH-A66G TCGA-DU-6392 TCGA-DU-6402 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        3.81       211.17         7.00       133.74        19.89        16.80 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7013 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TU 
       11.47        62.96         8.84        14.24        12.59         3.62 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-6692 TCGA-FG-7636 
       67.43        41.13       130.78        17.98        13.58        17.88 
TCGA-FG-8185 TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A60J TCGA-FG-A6J3 TCGA-HT-7468 
       14.20         0.59         3.72         7.04        10.59         6.67 
TCGA-HT-7469 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7611 TCGA-HT-7684 TCGA-HT-7686 
        7.82        16.54         6.38        57.57         6.05        42.74 
TCGA-HT-7691 TCGA-HT-7693 TCGA-HT-7857 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 
        0.10        17.52         0.23        23.61         3.68         1.68 
TCGA-HT-8106 TCGA-HT-8114 TCGA-HT-8564 TCGA-HT-A5RA TCGA-IK-7675 
        0.10         3.88        15.68        14.66        18.97 

$subtype3
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       64.64        40.18         6.38         7.36         6.58       122.73 
TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 TCGA-DB-A4X9 TCGA-DB-A4XB TCGA-DB-A4XC 
       46.65        50.17        78.28        30.08        12.72        27.62 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W 
       72.95        12.59        11.01        16.04        27.78        13.64 
TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 
       14.40        14.53        17.42       156.23       138.25        14.99 
TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 
       26.30         7.96        18.90        62.01        60.30        23.31 
TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-A5TS TCGA-E1-5305 TCGA-E1-5307 
        2.76         3.98        16.01        15.12        79.96        57.93 
TCGA-E1-5311 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
      134.27        34.36        14.89        22.55        10.29        20.09 
TCGA-FG-8181 TCGA-FG-8187 TCGA-FG-8189 TCGA-FG-A4MW TCGA-FG-A6J1 TCGA-HT-7467 
       12.95        20.09        11.87         5.26         4.08         0.10 
TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 
        8.81         3.75        17.42         6.54        75.19        59.18 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7681 TCGA-HT-7688 
       23.18         4.57         3.16        56.09        44.68        31.69 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        6.90        14.53        39.09        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8018 
        5.33         2.93        11.28        31.40         1.64        21.50 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 
       33.01         6.25         0.46         3.95        29.59         1.71 
TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 
       10.49         0.13         0.10         2.66        13.02         1.81 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 TCGA-QH-A65V 
       13.45         8.32        35.90         4.31        42.77         4.80 
TCGA-QH-A65Z 
        4.08 

$subtype4
TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-A64P TCGA-DB-A64Q TCGA-DH-5144 
        0.10         9.96         7.99        16.77         5.98         8.02 
TCGA-DH-A669 TCGA-DU-6394 TCGA-DU-7015 TCGA-DU-7018 TCGA-EZ-7264 TCGA-FG-6690 
       30.18        22.42        90.77        30.67        14.33        12.85 
TCGA-FG-7637 TCGA-FG-A6IZ TCGA-HT-7692 TCGA-HT-A5R9 TCGA-HW-7491 
       33.53         4.18         2.96         0.07        40.18 

$subtype5
TCGA-CS-6290 TCGA-CS-6667 TCGA-DB-5279 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 
       17.95         7.53        44.52         6.74        13.38         8.45 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6395 
      182.33        18.94        17.46        15.12        52.11        49.02 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6407 
       46.06        65.72         1.22        87.45        11.64        94.52 
TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7294 TCGA-DU-7299 TCGA-DU-8163 TCGA-DU-8166 
      114.05         7.96        94.29        43.99        20.68        16.93 
TCGA-DU-8167 TCGA-DU-8168 TCGA-FG-5962 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-8182 
       15.45        14.14        36.13        32.19        18.74        13.64 
TCGA-FG-8186 TCGA-HT-7471 TCGA-HT-7483 TCGA-HT-7604 TCGA-HT-7620 TCGA-HT-7676 
       16.01         0.13       154.09       107.93        14.27         0.16 
TCGA-HT-7677 TCGA-HT-7687 TCGA-HT-7690 TCGA-HT-7854 TCGA-HT-7858 TCGA-HT-8012 
       16.24         0.10         0.10        39.48        50.63         9.40 
TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8111 TCGA-HW-7486 
       63.55         2.50         0.23        29.88 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.03     0.10     0.10     0.07     0.10 
subtype1 subtype2 subtype3 subtype4 subtype5 
  117.40   211.17   156.23    90.77   182.33 
subtype1 subtype2 subtype3 subtype4 subtype5 
  14.930   15.420   14.530   12.850   17.705 
[1] "0.0 - 117.4 (14.9)" "0.1 - 211.2 (15.4)" "0.1 - 156.2 (14.5)"
[4] "0.1 - 90.8 (12.8)"  "0.1 - 182.3 (17.7)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype5" "subtype2" "subtype1" "subtype5" "subtype4"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype5" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
 [43] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
 [55] "subtype4" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype5" "subtype5" "subtype5" "subtype1"
 [67] "subtype5" "subtype5" "subtype5" "subtype5" "subtype2" "subtype5"
 [73] "subtype4" "subtype5" "subtype1" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
 [85] "subtype5" "subtype5" "subtype5" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype5"
[103] "subtype3" "subtype5" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype5"
[115] "subtype3" "subtype1" "subtype5" "subtype5" "subtype5" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype4" "subtype5" "subtype2"
[139] "subtype3" "subtype5" "subtype5" "subtype3" "subtype4" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype5" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype5" "subtype1" "subtype1" "subtype1" "subtype3" "subtype5"
[193] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype5" "subtype5" "subtype5" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype5" "subtype3" "subtype1"
[211] "subtype5" "subtype2" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype5" "subtype1" "subtype3" "subtype2" "subtype5" "subtype1"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[235] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype5" "subtype3" "subtype1" "subtype5"
[247] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[253] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype5" "subtype3" "subtype3" "subtype1"
[265] "subtype4" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[271] "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype5" "subtype2" "subtype1" "subtype5" "subtype4"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype5" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
 [43] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
 [55] "subtype4" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype5" "subtype5" "subtype5" "subtype1"
 [67] "subtype5" "subtype5" "subtype5" "subtype5" "subtype2" "subtype5"
 [73] "subtype4" "subtype5" "subtype1" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
 [85] "subtype5" "subtype5" "subtype5" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype5"
[103] "subtype3" "subtype5" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype5"
[115] "subtype3" "subtype1" "subtype5" "subtype5" "subtype5" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype4" "subtype5" "subtype2"
[139] "subtype3" "subtype5" "subtype5" "subtype3" "subtype4" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype5" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype5" "subtype1" "subtype1" "subtype1" "subtype3" "subtype5"
[193] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype5" "subtype5" "subtype5" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype5" "subtype3" "subtype1"
[211] "subtype5" "subtype2" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype5" "subtype1" "subtype3" "subtype2" "subtype5" "subtype1"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[235] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype5" "subtype3" "subtype1" "subtype5"
[247] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[253] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype5" "subtype3" "subtype3" "subtype1"
[265] "subtype4" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[271] "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
  [7] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype5" "subtype2" "subtype1" "subtype5" "subtype4"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype5" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
 [43] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
 [55] "subtype4" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype5" "subtype5" "subtype5" "subtype1"
 [67] "subtype5" "subtype5" "subtype5" "subtype5" "subtype2" "subtype5"
 [73] "subtype4" "subtype5" "subtype1" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
 [85] "subtype5" "subtype5" "subtype5" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype5"
[103] "subtype3" "subtype5" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype5"
[115] "subtype3" "subtype1" "subtype5" "subtype5" "subtype5" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype4" "subtype5" "subtype2"
[139] "subtype3" "subtype5" "subtype5" "subtype3" "subtype4" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype5" "subtype2" "subtype5" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype5" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype5" "subtype1" "subtype1" "subtype1" "subtype3" "subtype5"
[193] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype5" "subtype5" "subtype5" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype5" "subtype3" "subtype1"
[211] "subtype5" "subtype2" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype5" "subtype1" "subtype3" "subtype2" "subtype5" "subtype1"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[235] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype5" "subtype3" "subtype1" "subtype5"
[247] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[253] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype5" "subtype3" "subtype3" "subtype1"
[265] "subtype4" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[271] "subtype1" "subtype1" "subtype3" "subtype3"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 32 36
  subtype2 20 33
  subtype3 44 47
  subtype4  8  9
  subtype5 23 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   36
  subtype2   20   33
  subtype3   44   47
  subtype4    8    9
  subtype5   23   23
D9V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          30               19                19
  subtype2          31               13                 9
  subtype3          16               26                49
  subtype4           1                3                13
  subtype5           8               15                23
D9V5, multiclass
D9V6, binary
          cls
clus        0  1
  subtype1 19 49
  subtype2 22 31
  subtype3 24 67
  subtype4  5 12
  subtype5 18 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   49
  subtype2   22   31
  subtype3   24   67
  subtype4    5   12
  subtype5   18   28

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype2 115  38
  subtype3 101  19
subtype2 subtype3 
     153      120 
subtype2 subtype3 
      38       19 
$subtype2
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5394 
        4.70         7.69        43.89        18.15        10.62         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       20.98         9.96        17.69        23.84        17.95         8.45 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5279 
        7.53        81.96        75.25        47.93        72.92        44.52 
TCGA-DB-5280 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A64O TCGA-DB-A64P 
       36.56        10.29        12.72        27.02        18.84        16.77 
TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64V TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
        5.98        15.42        14.73        19.96        31.82        30.28 
TCGA-DH-5144 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F TCGA-DU-5847 
        8.02        30.18        29.59        15.72         7.79        17.98 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6394 
        8.45         6.81       182.33        18.94        17.46        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.72        87.45         7.00 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 
       19.89        16.80        94.52       114.05         7.69        11.47 
TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
       62.96         6.51         8.84       117.40        90.77        30.67 
TCGA-DU-7290 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8163 
       10.36        25.91        41.98         5.10        23.74        20.68 
TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT TCGA-DU-A5TU TCGA-DU-A5TW 
       19.10        14.24        12.59         4.93         3.62         5.62 
TCGA-DU-A5TY TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-5319 
       12.20        50.14        67.43        41.13        78.18        95.57 
TCGA-E1-5322 TCGA-FG-6688 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 
      130.78        18.74        12.85        23.97        13.58        15.35 
TCGA-FG-7637 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8187 TCGA-FG-8188 TCGA-FG-8191 
       33.53        13.64        14.20        20.09        14.93        15.52 
TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY TCGA-FG-A60J TCGA-FG-A60K 
       24.46         0.59         3.72         9.67         7.04         6.61 
TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J3 TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-7469 
        7.00         4.18        10.59         0.13         6.67         7.82 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
        0.03        16.54         6.38         7.10        60.03         3.98 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 
        5.03        29.82       107.93        17.29        22.06        45.99 
TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7676 TCGA-HT-7677 TCGA-HT-7680 
       57.57         0.23        14.27         0.16        16.24         0.76 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 
        6.05        42.74        14.93         0.10         0.10         2.96 
TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 
       17.52        39.48        19.23         0.23        50.63         0.49 
TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-7884 TCGA-HT-8011 TCGA-HT-8013 
       23.61         3.68         1.68        11.28        16.24        63.55 
TCGA-HT-8106 TCGA-HT-8108 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
        0.10         2.50         4.67         0.23         3.88        16.01 
TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HW-7486 TCGA-HW-7490 TCGA-HW-7491 TCGA-IK-7675 
        0.23        14.66        29.88        19.23        40.18        18.97 
TCGA-P5-A5EW TCGA-P5-A5F1 TCGA-P5-A5F6 
        6.71         5.88         1.28 

$subtype3
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6665 TCGA-CS-6668 TCGA-CS-6669 
       64.64        40.18         6.38        12.43         7.99         7.36 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 TCGA-DB-A4X9 
        6.58       122.73        46.65        50.17        78.28        30.08 
TCGA-DB-A4XC TCGA-DB-A4XE TCGA-DB-A4XF TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L 
       27.62        18.81        18.38        72.95        12.59        11.01 
TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W TCGA-DB-A64X TCGA-DH-5143 TCGA-DH-A66G 
       16.04        27.78        13.64        10.92        14.40         3.81 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5874 TCGA-DU-6392 
       14.53        17.42         6.74        13.38        15.12       211.17 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6410 TCGA-DU-7008 
       52.11         1.22        11.64       133.74         7.96       156.23 
TCGA-DU-7009 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
      138.25        26.30         7.96        94.29        18.90        43.99 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 
       62.01        60.30        23.31         2.76         3.98        16.01 
TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TS TCGA-E1-5305 TCGA-E1-5307 
       16.93        15.45        14.14        15.12        79.96        57.93 
TCGA-E1-5311 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 
      134.27        14.33        36.13        17.98        34.36        32.19 
TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 
       14.89        17.88        22.55        10.29        20.09        12.95 
TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-A4MW TCGA-FG-A6J1 TCGA-HT-7467 TCGA-HT-7470 
       16.01        11.87         5.26         4.08         0.10         8.81 
TCGA-HT-7471 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 
        0.13         3.75        17.42         6.54        75.19        59.18 
TCGA-HT-7483 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7681 
      154.09        23.18         4.57         3.16        56.09        44.68 
TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 
        0.10        31.69         6.90        14.53        39.09        37.15 
TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 
        0.33         0.13         5.33         2.93        31.40         1.64 
TCGA-HT-8012 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8107 
        9.40        21.50        33.01        12.23         6.25         0.46 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 TCGA-HT-A4DV TCGA-HT-A5R5 
        3.95        29.59         1.71        15.68        10.49         0.13 
TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 TCGA-HT-A615 TCGA-HT-A616 TCGA-HW-7487 
        0.07         0.10         2.66        13.02         1.81        13.45 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 TCGA-QH-A65V TCGA-QH-A65Z 
        8.32        35.90         4.31        42.77         4.80         4.08 

subtype2 subtype3 
    0.03     0.07 
subtype2 subtype3 
  182.33   211.17 
subtype2 subtype3 
   15.72    14.71 
[1] "0.0 - 182.3 (15.7)" "0.1 - 211.2 (14.7)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[253] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[253] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[205] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[253] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype3"
[1] "hr=" "1.9"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype2 61 93
  subtype3 65 55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype2   61   93
  subtype3   65   55
        clus
vv       subtype2 subtype3
  FEMALE       61       65
  MALE         93       55
D10V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype2          63               42                49
  subtype3          22               34                64
D10V5, multiclass
D10V6, binary
          cls
clus         0   1
  subtype2  54 100
  subtype3  34  86
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype2   54  100
  subtype3   34   86
     clus
vv    subtype2 subtype3
  NO        54       34
  YES      100       86

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 41  5
  subtype2 25 16
  subtype3 29  7
  subtype4 66  9
  subtype5 23  4
  subtype6 17 16
  subtype7  3  1
  subtype8 12  0
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      46       41       36       75       27       33        4       12 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
       5       16        7        9        4       16        1        0 
$subtype1
TCGA-CS-4938 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5280 TCGA-DB-A4XD 
        4.70         8.45         7.53        81.96        36.56        27.02 
TCGA-DU-6407 TCGA-DU-6542 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7299 TCGA-DU-7301 
       94.52         7.69       117.40        90.77        43.99        25.91 
TCGA-DU-7306 TCGA-DU-8163 TCGA-DU-8167 TCGA-FG-6691 TCGA-FG-8182 TCGA-FG-8185 
       41.98        20.68        15.45        23.97        13.64        14.20 
TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MX TCGA-FN-7833 TCGA-HT-7472 
       14.93        15.52        24.46         3.72         0.13         0.03 
TCGA-HT-7473 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7604 
       16.54         7.10        60.03         3.98         5.03       107.93 
TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7676 TCGA-HT-7684 TCGA-HT-7689 
       17.29        45.99        57.57         0.16         6.05        14.93 
TCGA-HT-7690 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7879 TCGA-HT-8013 TCGA-HT-8111 
        0.10        19.23        50.63         3.68        63.55         0.23 
TCGA-HT-8114 TCGA-HW-7490 TCGA-P5-A5EW TCGA-P5-A5F1 
        3.88        19.23         6.71         5.88 

$subtype2
TCGA-CS-4941 TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-6186 TCGA-DB-A64O TCGA-DH-5140 
        7.69        10.62        20.98        17.69        18.84        19.96 
TCGA-DH-5142 TCGA-DU-5847 TCGA-DU-6396 TCGA-DU-6402 TCGA-DU-7006 TCGA-DU-7007 
       30.28        17.98        75.16         7.00        11.47        62.96 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-8158 TCGA-DU-8161 TCGA-DU-8165 
        6.51         8.84        10.36         5.10        23.74        19.10 
TCGA-DU-A5TP TCGA-DU-A5TT TCGA-DU-A5TY TCGA-FG-6692 TCGA-FG-A4MU TCGA-HT-7469 
       14.24         4.93        12.20        13.58         0.59         7.82 
TCGA-HT-7478 TCGA-HT-7608 TCGA-HT-7616 TCGA-HT-7680 TCGA-HT-7691 TCGA-HT-7854 
        6.38        22.06         0.23         0.76         0.10        39.48 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8106 
        0.23         0.49         1.68        16.24        12.23         0.10 
TCGA-HT-8110 TCGA-HT-8563 TCGA-HT-A4DS TCGA-HT-A5RA TCGA-P5-A5F6 
        4.67        16.01         0.23        14.66         1.28 

$subtype3
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5390 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       43.89        18.15        64.64        75.25        47.93        46.65 
TCGA-DB-A4X9 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XE TCGA-DB-A4XG TCGA-DB-A64P 
       30.08        10.29        12.72        18.81        72.95        16.77 
TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64X TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D 
        5.98        15.42        10.92        30.18        29.59        15.72 
TCGA-DH-A66F TCGA-DU-A5TR TCGA-DU-A5TU TCGA-DU-A5TW TCGA-E1-5302 TCGA-E1-5303 
        7.79        12.59         3.62         5.62        50.14        67.43 
TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ 
       41.13       130.78         7.04         6.61         7.00         4.18 
TCGA-FG-A6J1 TCGA-FG-A6J3 TCGA-HT-7686 TCGA-HT-A5R9 TCGA-HT-A614 TCGA-QH-A65Z 
        4.08        10.59        42.74         0.07         2.66         4.08 

$subtype4
TCGA-CS-5393 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5278 TCGA-DB-5281 
       40.18         7.36         6.58       122.73        50.17        78.28 
TCGA-DB-A4XC TCGA-DB-A4XF TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64R TCGA-DB-A64W 
       27.62        18.38        12.59        11.01        16.04        13.64 
TCGA-DH-5143 TCGA-DH-A66G TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7019 
       14.40         3.81       156.23       138.25        14.99        26.30 
TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 
        7.96        18.90        62.01        60.30        23.31         2.76 
TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-6689 
        3.98        16.01        16.93        57.93       134.27        14.89 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8189 TCGA-FG-A4MW 
       10.29        20.09        12.95        16.01        11.87         5.26 
TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 
        0.10         8.81         3.75        17.42         6.54        75.19 
TCGA-HT-7481 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7681 
       59.18        23.18         4.57         3.16        56.09        44.68 
TCGA-HT-7688 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 
       31.69         6.90        14.53        39.09        37.15         0.33 
TCGA-HT-7877 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 
        0.13         5.33         2.93         1.64        21.50        33.01 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 TCGA-HT-8558 TCGA-HT-8564 
        6.25         0.46         3.95        29.59         1.71        15.68 
TCGA-HT-A5R5 TCGA-HT-A5RB TCGA-HT-A615 TCGA-HT-A616 TCGA-HW-7487 TCGA-HW-7489 
        0.13         0.10        13.02         1.81        13.45         8.32 
TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 
       35.90         4.31        42.77 

$subtype5
TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-7018 
        0.10         9.96         7.99        31.82         8.02        30.67 
TCGA-DU-7294 TCGA-DU-8168 TCGA-E1-5305 TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 
       94.29        14.14        79.96        78.18        95.57        14.33 
TCGA-FG-6690 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 TCGA-HT-7468 TCGA-HT-7471 
       12.85        15.35        33.53        22.55         6.67         0.13 
TCGA-HT-7483 TCGA-HT-7677 TCGA-HT-7687 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7884 
      154.09        16.24         0.10         2.96        17.52        11.28 
TCGA-HT-8012 TCGA-HT-8108 TCGA-HW-7491 
        9.40         2.50        40.18 

$subtype6
TCGA-CS-5397 TCGA-CS-6188 TCGA-CS-6290 TCGA-DB-5279 TCGA-DU-5849 TCGA-DU-5851 
        6.38        23.84        17.95        44.52        14.53        17.42 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 
        6.74        13.38         8.45         6.81       182.33        18.94 
TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 
       17.46        15.12       211.17        52.11        22.42        49.02 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.72         1.22        87.45        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6408 TCGA-DU-6410 TCGA-FG-5962 TCGA-FG-5963 
       19.89        16.80       114.05         7.96        36.13        17.98 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
       34.36        32.19        18.74 

$subtype7
TCGA-CS-6665 TCGA-FG-7636 TCGA-HT-7873 TCGA-IK-7675 
       12.43        17.88        23.61        18.97 

$subtype8
TCGA-DB-5276 TCGA-DB-A64U TCGA-DB-A64V TCGA-DU-A5TS TCGA-FG-8187 TCGA-FG-A4MY 
       72.92        27.78        14.73        15.12        20.09         9.67 
TCGA-HT-7602 TCGA-HT-7620 TCGA-HT-7902 TCGA-HT-A4DV TCGA-HW-7486 TCGA-QH-A65V 
       29.82        14.27        31.40        10.49        29.88         4.80 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
    0.03     0.10     0.07     0.10     0.10     1.22    12.43     4.80 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  117.40    75.16   130.78   156.23   154.09   211.17    23.61    72.92 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  15.485   10.620   15.570   14.530   14.330   18.940   18.425   17.605 
[1] "0.0 - 117.4 (15.5)" "0.1 - 75.2 (10.6)"  "0.1 - 130.8 (15.6)"
[4] "0.1 - 156.2 (14.5)" "0.1 - 154.1 (14.3)" "1.2 - 211.2 (18.9)"
[7] "12.4 - 23.6 (18.4)" "4.8 - 72.9 (17.6)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype4" "subtype5" "subtype2" "subtype5" "subtype6" "subtype2"
 [13] "subtype6" "subtype6" "subtype7" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype3"
 [25] "subtype8" "subtype3" "subtype4" "subtype6" "subtype1" "subtype4"
 [31] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype4" "subtype3" "subtype8" "subtype8" "subtype4"
 [49] "subtype3" "subtype2" "subtype5" "subtype2" "subtype4" "subtype5"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
 [61] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
 [67] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
 [73] "subtype6" "subtype6" "subtype2" "subtype6" "subtype6" "subtype6"
 [79] "subtype6" "subtype2" "subtype6" "subtype6" "subtype6" "subtype6"
 [85] "subtype1" "subtype6" "subtype6" "subtype1" "subtype2" "subtype2"
 [91] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype5" "subtype4" "subtype2" "subtype4" "subtype5"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype4" "subtype1" "subtype5" "subtype2"
[121] "subtype3" "subtype8" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype3" "subtype5" "subtype4" "subtype4"
[133] "subtype5" "subtype5" "subtype3" "subtype5" "subtype6" "subtype6"
[139] "subtype6" "subtype6" "subtype6" "subtype4" "subtype5" "subtype1"
[145] "subtype2" "subtype5" "subtype7" "subtype5" "subtype5" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype8"
[157] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
[163] "subtype1" "subtype8" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype4" "subtype5" "subtype2"
[175] "subtype4" "subtype5" "subtype1" "subtype1" "subtype4" "subtype4"
[181] "subtype4" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[187] "subtype5" "subtype1" "subtype1" "subtype8" "subtype4" "subtype1"
[193] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[199] "subtype1" "subtype2" "subtype8" "subtype1" "subtype5" "subtype2"
[205] "subtype4" "subtype1" "subtype3" "subtype5" "subtype4" "subtype1"
[211] "subtype1" "subtype2" "subtype5" "subtype5" "subtype4" "subtype4"
[217] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[223] "subtype7" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype5" "subtype8" "subtype4" "subtype2"
[235] "subtype5" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[241] "subtype2" "subtype4" "subtype5" "subtype4" "subtype2" "subtype1"
[247] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[253] "subtype8" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[259] "subtype4" "subtype4" "subtype8" "subtype4" "subtype4" "subtype1"
[265] "subtype5" "subtype4" "subtype4" "subtype7" "subtype4" "subtype1"
[271] "subtype1" "subtype2" "subtype8" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype4" "subtype5" "subtype2" "subtype5" "subtype6" "subtype2"
 [13] "subtype6" "subtype6" "subtype7" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype3"
 [25] "subtype8" "subtype3" "subtype4" "subtype6" "subtype1" "subtype4"
 [31] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype4" "subtype3" "subtype8" "subtype8" "subtype4"
 [49] "subtype3" "subtype2" "subtype5" "subtype2" "subtype4" "subtype5"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
 [61] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
 [67] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
 [73] "subtype6" "subtype6" "subtype2" "subtype6" "subtype6" "subtype6"
 [79] "subtype6" "subtype2" "subtype6" "subtype6" "subtype6" "subtype6"
 [85] "subtype1" "subtype6" "subtype6" "subtype1" "subtype2" "subtype2"
 [91] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype5" "subtype4" "subtype2" "subtype4" "subtype5"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype4" "subtype1" "subtype5" "subtype2"
[121] "subtype3" "subtype8" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype3" "subtype5" "subtype4" "subtype4"
[133] "subtype5" "subtype5" "subtype3" "subtype5" "subtype6" "subtype6"
[139] "subtype6" "subtype6" "subtype6" "subtype4" "subtype5" "subtype1"
[145] "subtype2" "subtype5" "subtype7" "subtype5" "subtype5" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype8"
[157] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
[163] "subtype1" "subtype8" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype4" "subtype5" "subtype2"
[175] "subtype4" "subtype5" "subtype1" "subtype1" "subtype4" "subtype4"
[181] "subtype4" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[187] "subtype5" "subtype1" "subtype1" "subtype8" "subtype4" "subtype1"
[193] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[199] "subtype1" "subtype2" "subtype8" "subtype1" "subtype5" "subtype2"
[205] "subtype4" "subtype1" "subtype3" "subtype5" "subtype4" "subtype1"
[211] "subtype1" "subtype2" "subtype5" "subtype5" "subtype4" "subtype4"
[217] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[223] "subtype7" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype5" "subtype8" "subtype4" "subtype2"
[235] "subtype5" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[241] "subtype2" "subtype4" "subtype5" "subtype4" "subtype2" "subtype1"
[247] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[253] "subtype8" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[259] "subtype4" "subtype4" "subtype8" "subtype4" "subtype4" "subtype1"
[265] "subtype5" "subtype4" "subtype4" "subtype7" "subtype4" "subtype1"
[271] "subtype1" "subtype2" "subtype8" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype4" "subtype5" "subtype2" "subtype5" "subtype6" "subtype2"
 [13] "subtype6" "subtype6" "subtype7" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype3"
 [25] "subtype8" "subtype3" "subtype4" "subtype6" "subtype1" "subtype4"
 [31] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [43] "subtype3" "subtype4" "subtype3" "subtype8" "subtype8" "subtype4"
 [49] "subtype3" "subtype2" "subtype5" "subtype2" "subtype4" "subtype5"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
 [61] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
 [67] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
 [73] "subtype6" "subtype6" "subtype2" "subtype6" "subtype6" "subtype6"
 [79] "subtype6" "subtype2" "subtype6" "subtype6" "subtype6" "subtype6"
 [85] "subtype1" "subtype6" "subtype6" "subtype1" "subtype2" "subtype2"
 [91] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
 [97] "subtype1" "subtype5" "subtype4" "subtype2" "subtype4" "subtype5"
[103] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[109] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[115] "subtype4" "subtype2" "subtype4" "subtype1" "subtype5" "subtype2"
[121] "subtype3" "subtype8" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype3" "subtype5" "subtype4" "subtype4"
[133] "subtype5" "subtype5" "subtype3" "subtype5" "subtype6" "subtype6"
[139] "subtype6" "subtype6" "subtype6" "subtype4" "subtype5" "subtype1"
[145] "subtype2" "subtype5" "subtype7" "subtype5" "subtype5" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype8"
[157] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
[163] "subtype1" "subtype8" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype4" "subtype5" "subtype2"
[175] "subtype4" "subtype5" "subtype1" "subtype1" "subtype4" "subtype4"
[181] "subtype4" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[187] "subtype5" "subtype1" "subtype1" "subtype8" "subtype4" "subtype1"
[193] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[199] "subtype1" "subtype2" "subtype8" "subtype1" "subtype5" "subtype2"
[205] "subtype4" "subtype1" "subtype3" "subtype5" "subtype4" "subtype1"
[211] "subtype1" "subtype2" "subtype5" "subtype5" "subtype4" "subtype4"
[217] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[223] "subtype7" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype4" "subtype2" "subtype5" "subtype8" "subtype4" "subtype2"
[235] "subtype5" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[241] "subtype2" "subtype4" "subtype5" "subtype4" "subtype2" "subtype1"
[247] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
[253] "subtype8" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[259] "subtype4" "subtype4" "subtype8" "subtype4" "subtype4" "subtype1"
[265] "subtype5" "subtype4" "subtype4" "subtype7" "subtype4" "subtype1"
[271] "subtype1" "subtype2" "subtype8" "subtype3"
D11V2, continuous
D11V3, binary
          cls
clus        0  1
  subtype1 13 33
  subtype2 18 23
  subtype3 18 18
  subtype4 37 38
  subtype5 15 12
  subtype6 19 14
  subtype7  1  3
  subtype8  6  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   33
  subtype2   18   23
  subtype3   18   18
  subtype4   37   38
  subtype5   15   12
  subtype6   19   14
  subtype7    1    3
  subtype8    6    7
D11V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          19               16                11
  subtype2          26                7                 8
  subtype3          15               12                 9
  subtype4          13               22                40
  subtype5           3                3                21
  subtype6           8               10                15
  subtype7           2                1                 1
  subtype8           0                5                 8
D11V5, multiclass
D11V6, binary
          cls
clus        0  1
  subtype1 14 32
  subtype2 12 29
  subtype3 10 26
  subtype4 18 57
  subtype5  7 20
  subtype6 22 11
  subtype7  3  1
  subtype8  2 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   32
  subtype2   12   29
  subtype3   10   26
  subtype4   18   57
  subtype5    7   20
  subtype6   22   11
  subtype7    3    1
  subtype8    2   11

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2        0   1
  subtype1   5   5
  subtype2 111  41
  subtype3 100  12
subtype1 subtype2 subtype3 
      10      152      112 
subtype1 subtype2 subtype3 
       5       41       12 
$subtype1
TCGA-CS-5397 TCGA-CS-6665 TCGA-DU-5852 TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-6404 
        6.38        12.43         6.74       211.17        11.64       133.74 
TCGA-FG-5963 TCGA-FG-A4MW TCGA-HT-8104 TCGA-HT-8564 
       17.98         5.26        12.23        15.68 

$subtype2
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5394 
        4.70         7.69        43.89        18.15        10.62         0.10 
TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 
       20.98         9.96        17.69        23.84        17.95         8.45 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
        7.53        81.96        75.25        47.93        72.92        46.65 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DB-A4XA TCGA-DB-A4XB TCGA-DB-A4XD TCGA-DB-A64O 
       36.56        78.28        10.29        12.72        27.02        18.84 
TCGA-DB-A64P TCGA-DB-A64Q TCGA-DB-A64S TCGA-DB-A64V TCGA-DB-A64X TCGA-DH-5140 
       16.77         5.98        15.42        14.73        10.92        19.96 
TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-A669 TCGA-DH-A66B TCGA-DH-A66D TCGA-DH-A66F 
       31.82        30.28        30.18        29.59        15.72         7.79 
TCGA-DU-5847 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 
       17.98         8.45         6.81       182.33        18.94        17.46 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 
       22.42        49.02        75.16        46.06        65.72        87.45 
TCGA-DU-6402 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 
        7.00        19.89        16.80        94.52       114.05         7.69 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 
       11.47        62.96         6.51         8.84       117.40        90.77 
TCGA-DU-7018 TCGA-DU-7290 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 
       30.67        10.36        43.99        25.91        41.98         5.10 
TCGA-DU-8161 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-A5TP TCGA-DU-A5TR TCGA-DU-A5TT 
       23.74        20.68        19.10        14.24        12.59         4.93 
TCGA-DU-A5TU TCGA-DU-A5TW TCGA-DU-A5TY TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
        3.62         5.62        12.20        50.14        67.43        41.13 
TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-FG-6688 TCGA-FG-6690 
      134.27        78.18        95.57       130.78        18.74        12.85 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8182 TCGA-FG-8185 
       23.97        13.58        15.35        33.53        13.64        14.20 
TCGA-FG-8188 TCGA-FG-8191 TCGA-FG-A4MT TCGA-FG-A4MU TCGA-FG-A4MX TCGA-FG-A4MY 
       14.93        15.52        24.46         0.59         3.72         9.67 
TCGA-FG-A60J TCGA-FG-A60K TCGA-FG-A60L TCGA-FG-A6IZ TCGA-FG-A6J3 TCGA-FN-7833 
        7.04         6.61         7.00         4.18        10.59         0.13 
TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7479 
        6.67         7.82         0.03        16.54         6.38         7.10 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 
       60.03       154.09         3.98         5.03        29.82       107.93 
TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7611 TCGA-HT-7616 TCGA-HT-7676 
       17.29        22.06        45.99        57.57         0.23         0.16 
TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7690 
       16.24         0.76         6.05        42.74        14.93         0.10 
TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7854 TCGA-HT-7855 TCGA-HT-7857 
        0.10         2.96        17.52        39.48        19.23         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7873 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-8011 
       50.63         0.49        23.61         3.68         1.68        16.24 
TCGA-HT-8013 TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HT-8563 
       63.55         0.10         4.67         0.23         3.88        16.01 
TCGA-HT-A4DS TCGA-HT-A5RA TCGA-HW-7490 TCGA-HW-7491 TCGA-IK-7675 TCGA-P5-A5EW 
        0.23        14.66        19.23        40.18        18.97         6.71 
TCGA-P5-A5F1 TCGA-P5-A5F6 
        5.88         1.28 

$subtype3
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 
       64.64        40.18         7.99         7.36         6.58       122.73 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-A4X9 TCGA-DB-A4XC TCGA-DB-A4XE TCGA-DB-A4XF 
       50.17        44.52        30.08        27.62        18.81        18.38 
TCGA-DB-A4XG TCGA-DB-A4XH TCGA-DB-A64L TCGA-DB-A64R TCGA-DB-A64U TCGA-DB-A64W 
       72.95        12.59        11.01        16.04        27.78        13.64 
TCGA-DH-5143 TCGA-DH-5144 TCGA-DH-A66G TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 
       14.40         8.02         3.81        14.53        17.42        13.38 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 
       15.12        52.11         1.22         7.96       156.23       138.25 
TCGA-DU-7010 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7300 
       14.99        26.30         7.96        94.29        18.90        62.01 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 
       60.30        23.31         2.76         3.98        16.01        16.93 
TCGA-DU-8167 TCGA-DU-8168 TCGA-DU-A5TS TCGA-E1-5305 TCGA-E1-5307 TCGA-EZ-7264 
       15.45        14.14        15.12        79.96        57.93        14.33 
TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 
       36.13        34.36        32.19        14.89        17.88        22.55 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8189 
       10.29        20.09        12.95        16.01        20.09        11.87 
TCGA-FG-A6J1 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7474 TCGA-HT-7475 
        4.08         0.10         8.81         0.13         3.75        17.42 
TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 
        6.54        75.19        59.18        23.18         4.57         3.16 
TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7681 TCGA-HT-7687 TCGA-HT-7688 TCGA-HT-7694 
       56.09        14.27        44.68         0.10        31.69         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 
       14.53        39.09        37.15         0.33         0.13         5.33 
TCGA-HT-7881 TCGA-HT-7884 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8018 
        2.93        11.28        31.40         1.64         9.40        21.50 
TCGA-HT-8019 TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8113 
       33.01         6.25         0.46         2.50         3.95        29.59 
TCGA-HT-8558 TCGA-HT-A4DV TCGA-HT-A5R5 TCGA-HT-A5R9 TCGA-HT-A5RB TCGA-HT-A614 
        1.71        10.49         0.13         0.07         0.10         2.66 
TCGA-HT-A615 TCGA-HT-A616 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 
       13.02         1.81        29.88        13.45         8.32        35.90 
TCGA-HW-7495 TCGA-IK-8125 TCGA-QH-A65V TCGA-QH-A65Z 
        4.31        42.77         4.80         4.08 

subtype1 subtype2 subtype3 
    5.26     0.03     0.07 
subtype1 subtype2 subtype3 
  211.17   182.33   156.23 
subtype1 subtype2 subtype3 
   12.33    16.24    14.53 
[1] "5.3 - 211.2 (12.3)" "0.0 - 182.3 (16.2)" "0.1 - 156.2 (14.5)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype3" "subtype3"
D12V2, continuous
D12V3, binary
          cls
clus        0  1
  subtype1  7  3
  subtype2 59 94
  subtype3 61 51
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    3
  subtype2   59   94
  subtype3   61   51
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        7       59       61
  MALE          3       94       51
D12V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           6                3                 1
  subtype2          65               43                45
  subtype3          15               30                67
D12V5, multiclass
D12V6, binary
          cls
clus        0  1
  subtype1  5  5
  subtype2 55 98
  subtype3 28 84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    5
  subtype2   55   98
  subtype3   28   84
     clus
vv    subtype1 subtype2 subtype3
  NO         5       55       28
  YES        5       98       84
> q(save="no")
